BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040965
(311 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/313 (69%), Positives = 255/313 (81%), Gaps = 4/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN----V 56
M+D Y KN DM SAILLF+ MLKRDVVSWT++I+GF R+G F EAI F+ M+ + +
Sbjct: 157 MLDAYAKNNDMGSAILLFKRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSL 216
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEATYVSVLSSCA L G L+LGKQ+HG I+RNE+VL+VF+GTALID YGKVGC
Sbjct: 217 GLVKPNEATYVSVLSSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGC 276
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AIRVF SM IK +C+WNAMIS LA+N REK+AL MF+ M+EKG NE+TFV VLTA
Sbjct: 277 LNSAIRVFNSMTIKQICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVLTA 336
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C RA+LV+ G+ LF SM + V PIMEHYGCVVDLLGRAGLL EA E +RSMPFEPDAS
Sbjct: 337 CTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMPFEPDAS 396
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACKIHGA L +EVG RLL LQP HCG++V+LSNI+AGLE+W+ A D+RKAMV
Sbjct: 397 VLGALLGACKIHGANKLANEVGGRLLRLQPLHCGQFVLLSNINAGLEKWSVAADVRKAMV 456
Query: 297 EAGIRKIPAYSLI 309
EAGI K+PAYSLI
Sbjct: 457 EAGISKVPAYSLI 469
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF N L R +++ N + +F M+ + PN T+ S++ +
Sbjct: 52 LFYNTLTRAYLNFGQTYN----------TVYLFTLMLAHQT--PPNSHTFPSLIKAATLS 99
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+G +H +++ ++ F+ T+L+ Y ++GCL A +VF ++ + +N
Sbjct: 100 FPS----IGTSLHTQVIKRGVLCDPFVQTSLLAFYSQIGCLYNAHKVFDGILHPWIVEYN 155
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AM+ + A N+ A+++F M L+ + +++ V++ +R+ L + F M+
Sbjct: 156 AMLDAYAKNNDMGSAILLFKRM----LKRDVVSWTTVISGFSRSGLFREAINFFRVMIAH 211
Query: 197 FEV 199
+V
Sbjct: 212 EDV 214
>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa]
gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/313 (68%), Positives = 256/313 (81%), Gaps = 4/313 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN---- 57
+D Y KNGDM SA LF++M KRDVVSWTS+INGF +NG FGEAI +F+ MM + +
Sbjct: 160 LDAYAKNGDMGSACCLFKSMPKRDVVSWTSVINGFAKNGLFGEAIRLFREMMLHDDVKCC 219
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
V+PNEATYVSVLSSCA L G L +GKQ+HGYI+RNE+ ++VF+GT LID YGKVGCL
Sbjct: 220 FVKPNEATYVSVLSSCANLDERGVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCL 279
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
AIRV+ M++K VCTWNA+ISSLA+N RE++AL MF +MK +GL NE+TF+AVLTAC
Sbjct: 280 SNAIRVYNQMMVKKVCTWNAIISSLANNGREEQALDMFKKMKGEGLCPNEVTFIAVLTAC 339
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
ARA+LVE+GLELF SM G+F +VPIMEHYGCVVDLLG AGLL EA EF+R MPFEPDAS
Sbjct: 340 ARAKLVEIGLELFQSMAGEFGLVPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASA 399
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LGALLGACKIHGA+DL +EVG RLLELQP+HCG+YV LS+IH G+ RW A D+RK MVE
Sbjct: 400 LGALLGACKIHGAIDLGNEVGSRLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVE 459
Query: 298 AGIRKIPAYSLIE 310
A IR +PA SLI+
Sbjct: 460 ARIRIVPACSLID 472
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 47/210 (22%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ SV+ + L++G +H + ++ F+ T+L+ +Y + G L A
Sbjct: 86 PNSHTFPSVIKA----ATHSCLFIGTSLHTQAINRGVLYDPFIQTSLLGMYSQFGYLLNA 141
Query: 121 IRVF-------------------------------KSMVIKDVCTWNAMISSLASNSREK 149
+VF KSM +DV +W ++I+ A N
Sbjct: 142 CKVFDEISHPCIVEYNATLDAYAKNGDMGSACCLFKSMPKRDVVSWTSVINGFAKNGLFG 201
Query: 150 EALVMF------DEMKEKGLRANEITFVAVLTACARAQLVELGL----ELFHSMLGKFEV 199
EA+ +F D++K ++ NE T+V+VL++C A L E G+ + H + + EV
Sbjct: 202 EAIRLFREMMLHDDVKCCFVKPNEATYVSVLSSC--ANLDERGVLCIGKQIHGYIVRNEV 259
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ ++D G+ G LS A M
Sbjct: 260 FVTVFIGTTLIDFYGKVGCLSNAIRVYNQM 289
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + +AI ++ M+ + V +W +II+ NG +A+ +FK M G +
Sbjct: 269 LIDFYGKVGCLSNAIRVYNQMMVKKVCTWNAIISSLANNGREEQALDMFKKMKGEG--LC 326
Query: 61 PNEATYVSVLSSCA-GLVNEGGLYLGKQVHGYILRNEIVLSVFMGT--ALIDLYGKVGCL 117
PNE T+++VL++CA + E GL L + + G E L M ++DL G G L
Sbjct: 327 PNEVTFIAVLTACARAKLVEIGLELFQSMAG-----EFGLVPIMEHYGCVVDLLGMAGLL 381
Query: 118 ERAIRVFKSM 127
A + M
Sbjct: 382 REASEFIRRM 391
>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Vitis
vinifera]
Length = 454
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/314 (67%), Positives = 249/314 (79%), Gaps = 4/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 139 MLDALGKNGDMGSALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 198
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 199 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 258
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK KGL +E+TFVAV+TA
Sbjct: 259 LENVMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVTFVAVITA 318
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++SMPFEPDA+
Sbjct: 319 CARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSMPFEPDAT 378
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 379 VLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 438
Query: 297 EAGIRKIPAYSLIE 310
EAGI KIPAYS+I+
Sbjct: 439 EAGISKIPAYSMID 452
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G++ + + +F +M+ + RPN T+ S++ A + +G +
Sbjct: 32 YNSLIRGYLNFVEPHKTLLIFTHMLAH--QARPNNLTFPSIIKKAASCLPSLAFMIGTPL 89
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H ++++ + +F+ T+L+ LY ++ + A VF+ + V + NAM+ +L N
Sbjct: 90 HTHVIKRGLWHDLFIQTSLVVLYARLCKVSDACPVFEEISRPCVVSSNAMLDALGKNGDM 149
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
AL +F+ M E+ + +++ +++ R + E ++ F M+G +V
Sbjct: 150 GSALXLFESMPERDV----VSWTSIINGFGRNRCFEEAIQFFVKMMGHEDV 196
>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Vitis vinifera]
Length = 531
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/315 (67%), Positives = 249/315 (79%), Gaps = 4/315 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 167 MLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 226
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 227 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 286
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE A+++F MV+K VCTWNAMISSLA N REK+AL +F++MK +GL +E+TFVAV+TA
Sbjct: 287 LENAMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMQGLCPDEVTFVAVITA 346
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++ MPFEPDA+
Sbjct: 347 CARSKFVVLGLGFFQSMWCDFGVVPRMVHYGCVVDLLGRAGLLEEATEFIKRMPFEPDAT 406
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLELQP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 407 VLGALLGACKVHGAIELGNEVGRRLLELQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 466
Query: 297 EAGIRKIPAYSLIEA 311
EAGI KIPAYS+ A
Sbjct: 467 EAGISKIPAYSMNPA 481
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G++ + + +F +M+ + PN T+ S++ A +G +
Sbjct: 60 YNSLIRGYLNFVEPHKTLLIFTHMLAHQ--APPNNLTFPSIIKKAASCSPSLAFMIGTPL 117
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H ++++ + +F+ T+L+ LY ++ + A RVF+ + V + NAM+ +L N
Sbjct: 118 HTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACRVFEEISRPCVVSSNAMLDALGKNGDM 177
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
AL +F+ M E+ + +++ +++ R + E ++ F M+G +V
Sbjct: 178 GSALFLFESMPERDV----VSWTSIINGFGRNRCFEEAIQFFVKMMGHEDV 224
>gi|147809483|emb|CAN60147.1| hypothetical protein VITISV_041924 [Vitis vinifera]
Length = 480
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/311 (67%), Positives = 244/311 (78%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 75 MLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 134
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 135 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 194
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK GL +E+TFVAV+TA
Sbjct: 195 LENXMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMXGLCPDEVTFVAVITA 254
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++ MPFEPDA+
Sbjct: 255 CARSKFVVLGLGFFQSMWCDFGVVPRMXHYGCVVDLLGRAGLLEEATEFIKXMPFEPDAT 314
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 315 VLGALLGACKVHGAIELGNEVGRRLLEXQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 374
Query: 297 EAGIRKIPAYS 307
EAGI KIPAYS
Sbjct: 375 EAGISKIPAYS 385
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L G +H ++++ + +F+ T+L+ LY ++ + A VF+ + V + NAM+ +
Sbjct: 19 LLQGTPLHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACXVFEEISRPCVVSSNAMLDA 78
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
L N AL +F+ M E+ + +++ +++ R + E ++ F M+G +V
Sbjct: 79 LGKNGDMGSALFLFESMPERDV----VSWTSIINGFGRNRCFEEAIQFFVKMMGHEDV 132
>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Cucumis sativus]
Length = 477
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +VKNGD+ SA+ +F +M + DVVSWTS+INGF NG F EA+ F MM + + V+
Sbjct: 158 MLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMMSGS-VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEATYVSVLSS A L EG L GK+VH YI+RNE SVF+GT LID YGK+G L A
Sbjct: 217 PNEATYVSVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++VCTWNAMISS ASN RE EAL +F MK +G+ NE+TFVA+LTACAR
Sbjct: 277 RTVFNQMKKREVCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARG 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+LGL+LF SML F +VPI EHY CVVDLLG+AGLL EA EF+ SMPF+PDASVLGA
Sbjct: 337 KLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGA 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIHGA +L +EVGRRLLE+QP+HCGRYV L++++AG E+WNRA +R+ M +A I
Sbjct: 397 LLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARI 456
Query: 301 RKIPAYSLIEA 311
+K PAYS ++
Sbjct: 457 QKTPAYSRVDP 467
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 44/169 (26%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSS---CAGLVNEGGLYLGKQVHGY-----ILRNE 96
A+ ++ M+ +PN T+ S++ S C+ L L K +H + +L +
Sbjct: 71 ALLLYTQMLSQQ--TKPNFHTFPSIIKSATICSSL-------LPKLIHAHAFKIGVLTDP 121
Query: 97 IVLSVFMGT--------------------------ALIDLYGKVGCLERAIRVFKSMVIK 130
+VL+ F+ + +++D + K G L A+ +F+SM
Sbjct: 122 VVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGSAVFMFRSMPEH 181
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
DV +W ++I+ N R EAL F M G ++ NE T+V+VL++ A
Sbjct: 182 DVVSWTSVINGFWWNGRFLEALWFFHVMMMSGSVKPNEATYVSVLSSSA 230
>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Cucumis
sativus]
Length = 477
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +VKNGD+ SA+ +F +M + DVVSWTS+INGF NG F EA+ F MM + + V+
Sbjct: 158 MLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMMSGS-VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEATYVSVLSS A L EG L GK+VH YI+RNE SVF+GT LID YGK+G L A
Sbjct: 217 PNEATYVSVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++VCTWNAMISS ASN RE EAL +F MK +G+ NE+TFVA+LTACAR
Sbjct: 277 RTVFNQMKKREVCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARG 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+LGL+LF SML F +VPI EHY CVVDLLG+AGLL EA EF+ SMPF+PDASVLGA
Sbjct: 337 KLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGA 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIHGA +L +EVGRRLLE+QP+HCGRYV L++++AG E+WNRA +R+ M +A I
Sbjct: 397 LLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARI 456
Query: 301 RKIPAYSLIEA 311
+K PAYS ++
Sbjct: 457 QKTPAYSRVDP 467
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 44/169 (26%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSS---CAGLVNEGGLYLGKQVHGY-----ILRNE 96
A+ ++ M+ +PN T+ S++ S C+ L L K +H + +L +
Sbjct: 71 ALLLYTQMLSQQ--TKPNFHTFPSIIKSATICSSL-------LPKLIHAHAFKIGVLTDP 121
Query: 97 IVLSVFMGT--------------------------ALIDLYGKVGCLERAIRVFKSMVIK 130
+VL+ F+ + +++D + K G L A+ +F+SM
Sbjct: 122 VVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGSAVFMFRSMPEH 181
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
DV +W ++I+ N R EAL F M G ++ NE T+V+VL++ A
Sbjct: 182 DVVSWTSVINGFWWNGRFLEALWFFXVMMMSGSVKPNEATYVSVLSSSA 230
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/314 (59%), Positives = 243/314 (77%), Gaps = 5/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
MI+ + NG+M+ A+L+FE M RDVVSWT+++NGF +G FG AI F MM + +
Sbjct: 156 MINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLD 215
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEATYVSVLSSC L +G L G+QVHGYI+ + L VF+GT+LI+LYGK+GC
Sbjct: 216 CLVKPNEATYVSVLSSCTELEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGC 275
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L + VF+ MV+++VCTWNAMISSLASN REKEAL +F++MK +GL+ N ITFVAVLTA
Sbjct: 276 LNYSASVFRVMVVREVCTWNAMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTA 335
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR V GLELF SM KF+VVP+MEHYGCVVDLLGRAG + EA E +R+MPF PD +
Sbjct: 336 CARGGFVSEGLELFESMSSKFQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKT 395
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGA LGAC+IHGA++L E+ ++L+LQ +HCG+Y++LS+++A ERWN A DLR ++
Sbjct: 396 VLGAFLGACRIHGAIELGEEIA-KMLKLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIM 454
Query: 297 EAGIRKIPAYSLIE 310
EAGI KIPA+S++
Sbjct: 455 EAGIHKIPAFSMVH 468
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 32/162 (19%)
Query: 48 VFKNMMGNVNLVRPNEATYVSVLSSCAGLVN-------------EGGLYLGKQVHGYILR 94
+F NM+ N V PN T+ +L S + V L + Y
Sbjct: 75 IFTNMLANN--VSPNTHTFPPLLKSSSAFVVTPLHCQALKRGILSDPFVLTTLLVVYART 132
Query: 95 NEIV-----------LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
N IV + A+I+ + G +E A+ VF+ M +DV +W M++ A
Sbjct: 133 NHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNGFA 192
Query: 144 SNSREKEALVMFDEMKEKG------LRANEITFVAVLTACAR 179
+ A+ F M ++ NE T+V+VL++C
Sbjct: 193 LSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTE 234
>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Glycine max]
Length = 503
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/314 (58%), Positives = 240/314 (76%), Gaps = 4/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
MI+ + NGDM++A+ LFE M +RDV SWT++++GF G FG +I F+NMM + +
Sbjct: 188 MINAFSMNGDMEAAVALFERMPRRDVFSWTTVVDGFALKGNFGASIRFFRNMMNHKDVVA 247
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT SVLSSCA L + L GKQVHGY++ NE+ L VF+GT+LI LYGK+GC
Sbjct: 248 GLVKPNEATCSSVLSSCANLDGKAALDWGKQVHGYVVMNEVKLGVFVGTSLIHLYGKMGC 307
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A VF+ MV+++VCTWNAMISSLAS+ REK AL MFD MK GL+ N ITF AVLTA
Sbjct: 308 LSNAENVFRVMVVREVCTWNAMISSLASHGREKNALDMFDRMKLHGLKPNSITFAAVLTA 367
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR LV GL+LF SM F + P ++HYGCV+DLLGRAG + EA E +R+MPF+PDAS
Sbjct: 368 CARGNLVREGLDLFRSMWYDFGIEPNLKHYGCVIDLLGRAGHIEEAAEIIRNMPFQPDAS 427
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGA LGAC+IHGA++L E+G+ +L LQ +H G+YV+LS+++A ERW+RA +LR+ ++
Sbjct: 428 VLGAFLGACRIHGAIELGEEIGKNMLRLQTQHSGQYVLLSSMNAEKERWDRAANLRREIM 487
Query: 297 EAGIRKIPAYSLIE 310
EAGI+KIPAYS++
Sbjct: 488 EAGIQKIPAYSMLH 501
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103
+A+ +F +M+ N PN T+ +L L LG +H L+ ++ F+
Sbjct: 103 KALSIFTHMLANQ--APPNSHTFPPLLKISP-------LPLGATLHSQTLKRGLLSDGFI 153
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
T L+ LY + L A VF+ + + NAMI++ + N + A+ +F+ M
Sbjct: 154 LTTLLALYARNHLLPHARMVFEEFPMFCIVACNAMINAFSMNGDMEAAVALFERMP---- 209
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
R + ++ V+ A + F +M+ +VV
Sbjct: 210 RRDVFSWTTVVDGFALKGNFGASIRFFRNMMNHKDVV 246
>gi|297739174|emb|CBI28825.3| unnamed protein product [Vitis vinifera]
Length = 265
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 210/261 (80%), Gaps = 1/261 (0%)
Query: 50 KNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
++G +NL +PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI
Sbjct: 4 STIVGWMNL-KPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIA 62
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
LYGK GCLE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK KGL +E+T
Sbjct: 63 LYGKTGCLENVMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVT 122
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
FVAV+TACAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++SM
Sbjct: 123 FVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSM 182
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289
PFEPDA+VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A
Sbjct: 183 PFEPDATVLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAA 242
Query: 290 DLRKAMVEAGIRKIPAYSLIE 310
D RKAM EAGI KIPAYS+I+
Sbjct: 243 DWRKAMTEAGISKIPAYSMID 263
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +++ + +F M+ + V +W ++I+ NG +A+ +F+ M + + P+E
Sbjct: 64 YGKTGCLENVMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKM--KMKGLCPDEV 121
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA-LIDLYGKVGCLERAIRV 123
T+V+V+++CA + LG + + V+ M ++DL G+ G LE A
Sbjct: 122 TFVAVITACA---RSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEF 178
Query: 124 FKSM 127
KSM
Sbjct: 179 IKSM 182
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/311 (54%), Positives = 233/311 (74%), Gaps = 2/311 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-LV 59
++D +NG+M+SA LF+ M DVVSWT++INGF +NG +A+ VF M+ N ++
Sbjct: 158 LLDACGRNGEMNSAFELFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVI 217
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT+V VLSSCA ++GG+ LGKQ+HGYIL EI+L+ +GTAL+D+YGK G LE
Sbjct: 218 TPNEATFVCVLSSCANF-DQGGIRLGKQIHGYILTKEIILTPILGTALLDMYGKAGDLEM 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F + K VC WNA+I +LASN R K+ L MF+ MK + N IT +A+LTACAR
Sbjct: 277 ALTIFHQIRDKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNVHPNGITLLAILTACAR 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+LV+LG++LF S+ +F+++P EHYGC+VDL+GRAGLL +A F++++PFEPDASV G
Sbjct: 337 YKLVDLGIQLFSSICSEFKIIPTSEHYGCIVDLIGRAGLLVDAANFIKNLPFEPDASVFG 396
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACKIH +L ++VG++L+ LQP+HCG+YV LS ++A W+ A +RKAM+EAG
Sbjct: 397 ALLGACKIHENAELGNKVGKQLIVLQPQHCGQYVALSMLNALDSNWSEAEQMRKAMIEAG 456
Query: 300 IRKIPAYSLIE 310
IRKIPAYS++
Sbjct: 457 IRKIPAYSVLS 467
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 82/298 (27%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL-SSCAGLVNEGGLYLGKQ 87
+ ++I ++ G + ++ +F +M+ + V+PN T+ S++ ++C+ G+ L
Sbjct: 54 YNTLIRSYLTTGQYKASLALFTHMLASQ--VQPNNLTFPSLIKAACSSFSVSSGVAL--- 108
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLE----------------------------- 118
HG R ++ F+ T+ + YG+VG L+
Sbjct: 109 -HGQAFRRGVLWDPFVQTSFVRFYGEVGDLKSSRKMFDDILDPCVVACNSLLDACGRNGE 167
Query: 119 --RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAV 173
A +F+ M + DV +W +I+ + N +AL++F EM + + NE TFV V
Sbjct: 168 MNSAFELFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFVCV 227
Query: 174 LTACARAQL--VELGLELFHSMLGKFEVV--PIMEHYGCVVDLLGRAGLLS--------- 220
L++CA + LG ++ +L K E++ PI+ ++D+ G+AG L
Sbjct: 228 LSSCANFDQGGIRLGKQIHGYILTK-EIILTPILG--TALLDMYGKAGDLEMALTIFHQI 284
Query: 221 -------------------------EAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
E E M+S P+ L A+L AC + VDL
Sbjct: 285 RDKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNVHPNGITLLAILTACARYKLVDL 342
>gi|15218490|ref|NP_172504.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213381|sp|Q9SY75.1|PPR30_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g10330
gi|4914335|gb|AAD32883.1|AC005489_21 F14N23.21 [Arabidopsis thaliana]
gi|332190445|gb|AEE28566.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%), Gaps = 2/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-LV 59
++D +NG+MD A F+ M DVVSWT++INGF + G +A+ VF M+ N ++
Sbjct: 158 LLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVI 217
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT+VSVLSSCA ++GG+ LGKQ+HGY++ EI+L+ +GTAL+D+YGK G LE
Sbjct: 218 TPNEATFVSVLSSCANF-DQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEM 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F + K VC WNA+IS+LASN R K+AL MF+ MK + N IT +A+LTACAR
Sbjct: 277 ALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACAR 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LV+LG++LF S+ +++++P EHYGCVVDL+GRAGLL +A F++S+PFEPDASVLG
Sbjct: 337 SKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLG 396
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACKIH +L + VG++L+ LQP+HCG+YV LS +A W+ A +RKAM+EAG
Sbjct: 397 ALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAG 456
Query: 300 IRKIPAYSLI 309
IRKIPAYS++
Sbjct: 457 IRKIPAYSVL 466
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 78/296 (26%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL-SSCAGLVNEGGLYLGKQ 87
+ ++I ++ G + ++ +F +M+ + V+PN T+ S++ ++C+ + G
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLAS--HVQPNNLTFPSLIKAACSSF----SVSYGVA 107
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLER---------------------------- 119
+HG L+ + F+ T+ + YG+VG LE
Sbjct: 108 LHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGE 167
Query: 120 ---AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAV 173
A F+ M + DV +W +I+ + +AL++F EM + + NE TFV+V
Sbjct: 168 MDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSV 227
Query: 174 LTACARAQL--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS----------- 220
L++CA + LG ++ ++ K E++ ++D+ G+AG L
Sbjct: 228 LSSCANFDQGGIRLGKQIHGYVMSK-EIILTTTLGTALLDMYGKAGDLEMALTIFDQIRD 286
Query: 221 -----------------------EAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
E E M+S P+ L A+L AC VDL
Sbjct: 287 KKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDL 342
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
K C +N +I S + K +L +F M ++ N +TF +++ A + V G+ L
Sbjct: 49 KTKCVYNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVAL 108
Query: 190 FHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
L + F P ++ V G G L +++ + P +LL AC +
Sbjct: 109 HGQALKRGFLWDPFVQ--TSFVRFYGEVGDLESSRKMFDDI-LNPCVVACNSLLDACGRN 165
Query: 249 GAVDLCHEVGRRL 261
G +D E +R+
Sbjct: 166 GEMDYAFEYFQRM 178
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 209/310 (67%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K G SA +FE M RDVVSW+ +ING+V+ F E + +F++MMG +
Sbjct: 208 MIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEK--IE 265
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ V+ LS+CA L G + G+ + Y+ R + L+V +GTALID+Y K G +ERA
Sbjct: 266 PNESVLVNALSACAHL---GAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERA 322
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M K+V W+AMI+ LA N + K+AL +F +M+ +G++ NE+TF+ +L AC+ +
Sbjct: 323 LEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHS 382
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+ G FHSM + + P H+ C+VDL GRAG+L +A+ ++SMPF+P++++ GA
Sbjct: 383 KLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGA 442
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IHG +L +VG+RLLEL P H GRYV+LSNI+A RW+R +LR+ M E +
Sbjct: 443 LLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQV 502
Query: 301 RKIPAYSLIE 310
K P S I+
Sbjct: 503 SKTPGCSFID 512
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 8/189 (4%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A LF + K D+ ++I + + +A+ VF + M ++V P+ T+
Sbjct: 82 HGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAV-VFYSEMTESSVVFPDVHTFP 140
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L +C+ + + L LG+ +H ++ + V + L+ +Y G +E A VF
Sbjct: 141 LLLKACSEIPS---LRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
D +WN MI K A MF+ M ++ + +++ ++ + + GL
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDV----VSWSVMINGYVQESRFKEGL 253
Query: 188 ELFHSMLGK 196
LF M+G+
Sbjct: 254 GLFQDMMGE 262
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 140/310 (45%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++D A LF+ M RDVV+W+++I+G+ ++ EA+ +F M G V
Sbjct: 313 LVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE--VN 370
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G L GK VH YI R ++ L+V +GTAL+D Y K GC++ A
Sbjct: 371 PNDVTMVSVLSACAVL---GALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDA 427
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ F+SM +++ TW A+I +ASN R +EAL +F M E + ++TF+ VL AC+
Sbjct: 428 VKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHG 487
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + + P +EHYGC+VDLLGRAGL+ EA +F+R+MP EP+A V A
Sbjct: 488 CLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRA 547
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +H V++ E ++++ L P H G Y++LSN +A + +W A +RK M E G+
Sbjct: 548 LLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGV 607
Query: 301 RKIPAYSLIE 310
KIP SLIE
Sbjct: 608 EKIPGCSLIE 617
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 132/232 (56%), Gaps = 10/232 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+ +A +LF + + V++W ++I G+V+NG + E + +FK M+ +
Sbjct: 212 LIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML---EVRA 268
Query: 61 P-NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P +E T +SV ++C L G LG+ + Y ++ S + TAL+D+Y K G L++
Sbjct: 269 PFDEVTLLSVATACGRL---GDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDK 325
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A R+F M +DV W+AMIS + R +EAL +F+EM+ + N++T V+VL+ACA
Sbjct: 326 ARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAV 385
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMP 230
+E G + HS + + + +P+ G +VD + G + +A + SMP
Sbjct: 386 LGALETG-KWVHSYIRRKD-LPLTVILGTALVDFYAKCGCIKDAVKAFESMP 435
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Query: 6 VKNGDMDSAILLFE--NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
+ + AI LF R S+ +I F+R G +A+ +F M+ + V P++
Sbjct: 113 TSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDT-AVSPDQ 171
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T + + SC+ + + L +G+ V Y + ++ F+ +LI +Y G + A +
Sbjct: 172 HTVANTVKSCSRMCD---LSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVL 228
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F ++ +K V WNAMI+ N KE + MF M E +E+T ++V TAC R
Sbjct: 229 FHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDA 288
Query: 184 ELG 186
LG
Sbjct: 289 NLG 291
>gi|357152420|ref|XP_003576113.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Brachypodium distachyon]
Length = 473
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 206/309 (66%), Gaps = 1/309 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D D+ +A FE M RDVVSWT++I+G RNGC +A+ F+ ++ + N
Sbjct: 158 MLDVLFLARDLATARDFFERMAVRDVVSWTTLISGLSRNGCHWDAVEAFRGLLVH-NKGW 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
EAT VSVLS+CA L GL +G VH Y++R+++ L+ F+GTAL+D YGK G ++
Sbjct: 217 LGEATLVSVLSACANLDGAEGLVVGMAVHAYVVRHQVDLTAFLGTALVDTYGKYGKMDCC 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F++++ K+VCTWNA++S+LA++ +E E LV F+ M G N+ITF+++LT CARA
Sbjct: 277 KRAFQAVLEKEVCTWNALLSALANHGKETETLVKFNMMIVGGFLPNQITFLSILTGCARA 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE+GL F +M+ +++V P+M HYGCVVDLLGRAG EA E + MPF PDASV GA
Sbjct: 337 GLVEIGLYWFEAMVTEYKVTPVMSHYGCVVDLLGRAGRFIEAIEIIERMPFPPDASVWGA 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK+HG V+L E+ R+L+ L P+ RYV + NI+ W A + + M EAGI
Sbjct: 397 LLGACKLHGNVELVAEIERKLVALGPQQSDRYVAIRNIYLEDGNWYAAIRMGQMMHEAGI 456
Query: 301 RKIPAYSLI 309
+K S +
Sbjct: 457 KKTAGQSSV 465
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 45/227 (19%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG---- 115
PN T+ S+L S + G +H LR + F+ +L+ YG+ G
Sbjct: 84 HPNGHTFPSLLRSASA---SGATT--TALHAQCLRRGLAADRFVACSLVRSYGRAGDLPC 138
Query: 116 ----------------C------------LERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
C L A F+ M ++DV +W +IS L+ N
Sbjct: 139 DAGKVFDEMRSPDLASCNAMLDVLFLARDLATARDFFERMAVRDVVSWTTLISGLSRNGC 198
Query: 148 EKEALVMFDEM--KEKGLRANEITFVAVLTACAR---AQLVELGLELFHSMLGKFEVVPI 202
+A+ F + KG E T V+VL+ACA A+ + +G+ + H+ + + +V
Sbjct: 199 HWDAVEAFRGLLVHNKGW-LGEATLVSVLSACANLDGAEGLVVGMAV-HAYVVRHQVDLT 256
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+VD G+ G + K +++ E + ALL A HG
Sbjct: 257 AFLGTALVDTYGKYGKMDCCKRAFQAV-LEKEVCTWNALLSALANHG 302
>gi|222630922|gb|EEE63054.1| hypothetical protein OsJ_17862 [Oryza sativa Japonica Group]
Length = 470
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 205/303 (67%), Gaps = 1/303 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +GDM A LF+ M+ RDVVSWT+II+G R GC +A+ +F+ + N R
Sbjct: 160 MLDVLCLSGDMYGARCLFDRMVVRDVVSWTTIISGLTRIGCHWDAVEMFRAFLLQ-NKGR 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+EAT VSVLS+CA L GL +G VHG+++R+E+ + F+GTALID+YGK G L
Sbjct: 219 LSEATLVSVLSACANLDAVEGLAVGMAVHGHVVRHEVQFTAFLGTALIDMYGKYGKLSCC 278
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + K+VCTWNA++S+LA++ +E EALV F+ M+ +G N ITFVAV+TACARA
Sbjct: 279 SHIFHLVRDKEVCTWNALLSALANHGKEAEALVKFEMMRSEGFLPNHITFVAVMTACARA 338
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F + +++V+P+M HYGCVVDLLGRAG EA + + MPF D SV GA
Sbjct: 339 GLVETGLDFFEELFTEYKVIPMMVHYGCVVDLLGRAGRFLEAIQIIERMPFMADDSVWGA 398
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIHG ++L ++ +L+ L + GRYV + N++ W AT + + M EAGI
Sbjct: 399 LLGACKIHGNIELSAQIREKLIVLGGQQPGRYVTVRNMYLEEGNWYAATRMGEVMQEAGI 458
Query: 301 RKI 303
+KI
Sbjct: 459 KKI 461
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHG---YILRN-----EIVLSVFMGT--ALI 108
VRPN T+ S+L S A + L +G +++R+ + + S + T A++
Sbjct: 103 VRPNRHTFPSLLKSSASF-DAATPTLHAHAYGRDGHLVRDARKVFDDMASPDLATCNAML 161
Query: 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE--MKEKGLRAN 166
D+ G + A +F MV++DV +W +IS L +A+ MF ++ KG R +
Sbjct: 162 DVLCLSGDMYGARCLFDRMVVRDVVSWTTIISGLTRIGCHWDAVEMFRAFLLQNKG-RLS 220
Query: 167 EITFVAVLTACARAQLVELGLEL---FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
E T V+VL+ACA VE GL + H + + EV ++D+ G+ G LS
Sbjct: 221 EATLVSVLSACANLDAVE-GLAVGMAVHGHVVRHEVQFTAFLGTALIDMYGKYGKLSCCS 279
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
+ + + ALL A HG
Sbjct: 280 HIFH-LVRDKEVCTWNALLSALANHG 304
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 203/310 (65%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYVK+ +M A ++F+ M+ RDV+SW ++ING+ G EA+ +F M V+
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVG--VK 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P EAT VS+LS+CA L G L G +H YI N I ++ +GTAL+D+Y K G + A
Sbjct: 296 PTEATVVSLLSACAHL---GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 352
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M KDV WN +I+ +A + KEA +F EMKE G+ N+ITFVA+L+AC+ A
Sbjct: 353 TQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 412
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G +L M + + P +EHYGCV+DLL RAG L EA E + +MP EP+ S LGA
Sbjct: 413 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA 472
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IHG +L VG+RL+ LQP H GRY++LSNI+A ++W+ A +R M GI
Sbjct: 473 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 532
Query: 301 RKIPAYSLIE 310
K+P S+IE
Sbjct: 533 SKVPGVSVIE 542
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 138/306 (45%), Gaps = 47/306 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A +F ++ + S+I + EA+ ++ M+ + ++P+ TY V+ +C
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG--LKPDHMTYPFVIKAC 176
Query: 74 AGLVNEGGL-YLGKQVHGYILRNEIVLSVFMGTALIDLY--------------------- 111
NE + + G VH +++++ ++ ++LI LY
Sbjct: 177 ----NESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDV 232
Query: 112 --------GKVGCLE--RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
G V +E A VF MV +DV +WN MI+ A + EAL +FD+M+
Sbjct: 233 VSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAV 292
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLL 219
G++ E T V++L+ACA ++ GL L H+ + + EV I+ +VD+ + G +
Sbjct: 293 GVKPTEATVVSLLSACAHLGALDKGLHL-HTYINDNRIEVNSIVG--TALVDMYAKCGKI 349
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN 277
S A + +M + D ++ IHG V ++ + + E ++P +LS
Sbjct: 350 SLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 408
Query: 278 I-HAGL 282
HAG+
Sbjct: 409 CSHAGM 414
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A +F + +N++I +L+S+ EAL ++ M + GL+ + +T+ V+ A
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175
Query: 177 CARAQLVELGLELFHSMLGK 196
C + + GL L H+ + K
Sbjct: 176 CNESSVTWFGL-LVHTHVVK 194
>gi|242086268|ref|XP_002443559.1| hypothetical protein SORBIDRAFT_08g021530 [Sorghum bicolor]
gi|241944252|gb|EES17397.1| hypothetical protein SORBIDRAFT_08g021530 [Sorghum bicolor]
Length = 478
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 203/303 (66%), Gaps = 2/303 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN-MMGNVNLV 59
++D GD+D+A FE M RD VSWT++++G R G A+ VF+ ++GN+
Sbjct: 163 LLDALCHAGDLDAAGDFFERMEARDPVSWTTLVSGLSRGGRHRRALEVFRGFLLGNMGR- 221
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R EAT VSV S+CA L GL G VH Y+LR+EI L+ F+GTAL+D+YGK G L+
Sbjct: 222 RLEEATLVSVFSACANLDGGEGLAAGMAVHAYLLRHEIELTAFLGTALVDMYGKHGRLDF 281
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
F+ + K VCTWNA++S+LA++ +E EALV FD M+ +G N+ITF+AVL ACAR
Sbjct: 282 CKSAFEIVCEKGVCTWNALLSALANHGKETEALVKFDMMRGEGFLPNQITFLAVLMACAR 341
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE+GL F +M+ ++ V P+M HYGCVVDLLGRAG EA + + MPF DASV G
Sbjct: 342 AGLVEVGLYWFEAMVAEYRVAPLMVHYGCVVDLLGRAGRFGEAIQVIERMPFAADASVWG 401
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG V+L E+G++L+ L P+ GRY+ + N++ W + + + M EAG
Sbjct: 402 ALLGACKLHGNVELAVEIGQKLISLGPQQSGRYMTIRNVYLEDGNWYAGSRMGEVMQEAG 461
Query: 300 IRK 302
I+K
Sbjct: 462 IKK 464
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE--MKEKG 162
AL+D G L+ A F+ M +D +W ++S L+ R + AL +F + G
Sbjct: 161 NALLDALCHAGDLDAAGDFFERMEARDPVSWTTLVSGLSRGGRHRRALEVFRGFLLGNMG 220
Query: 163 LRANEITFVAVLTACAR---AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
R E T V+V +ACA + + G+ + H+ L + E+ +VD+ G+ G L
Sbjct: 221 RRLEEATLVSVFSACANLDGGEGLAAGMAV-HAYLLRHEIELTAFLGTALVDMYGKHGRL 279
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHG 249
K + E ALL A HG
Sbjct: 280 DFCKSAF-EIVCEKGVCTWNALLSALANHG 308
>gi|115462927|ref|NP_001055063.1| Os05g0271900 [Oryza sativa Japonica Group]
gi|50878453|gb|AAT85227.1| unknown protein [Oryza sativa Japonica Group]
gi|113578614|dbj|BAF16977.1| Os05g0271900 [Oryza sativa Japonica Group]
gi|215734926|dbj|BAG95648.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 488
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 205/303 (67%), Gaps = 1/303 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +GDM A LF+ M+ RDVVSWT+II+G R GC +A+ +F+ + N R
Sbjct: 178 MLDVLCLSGDMYGARCLFDRMVVRDVVSWTTIISGLTRIGCHWDAVEMFRAFLLQ-NKGR 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+EAT VSVLS+CA L GL +G VHG+++R+E+ + F+GTALID+YGK G L
Sbjct: 237 LSEATLVSVLSACANLDAVEGLAVGMAVHGHVVRHEVQFTAFLGTALIDMYGKYGKLSCC 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + K+VCTWNA++S+LA++ +E EALV F+ M+ +G N ITFVAV+TACARA
Sbjct: 297 SHIFHLVRDKEVCTWNALLSALANHGKEAEALVKFEMMRSEGFLPNHITFVAVMTACARA 356
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F + +++V+P+M HYGCVVDLLGRAG EA + + MPF D SV GA
Sbjct: 357 GLVETGLDFFEELFTEYKVIPMMVHYGCVVDLLGRAGRFLEAIQIIERMPFMADDSVWGA 416
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIHG ++L ++ +L+ L + GRYV + N++ W AT + + M EAGI
Sbjct: 417 LLGACKIHGNIELSAQIREKLIVLGGQQPGRYVTVRNMYLEEGNWYAATRMGEVMQEAGI 476
Query: 301 RKI 303
+KI
Sbjct: 477 KKI 479
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 91/228 (39%), Gaps = 45/228 (19%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VRPN T+ S+L S A +H LR + F+ +L+ YG+ G L
Sbjct: 103 VRPNRHTFPSLLKSSASFDAAT-----PTLHAQCLRRGLDEDRFVACSLLSAYGRDGHLV 157
Query: 119 RAIR--------------------------------VFKSMVIKDVCTWNAMISSLASNS 146
R R +F MV++DV +W +IS L
Sbjct: 158 RDARKVFDDMASPDLATCNAMLDVLCLSGDMYGARCLFDRMVVRDVVSWTTIISGLTRIG 217
Query: 147 REKEALVMFDE--MKEKGLRANEITFVAVLTACARAQLVELGLEL---FHSMLGKFEVVP 201
+A+ MF ++ KG R +E T V+VL+ACA VE GL + H + + EV
Sbjct: 218 CHWDAVEMFRAFLLQNKG-RLSEATLVSVLSACANLDAVE-GLAVGMAVHGHVVRHEVQF 275
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++D+ G+ G LS + + + ALL A HG
Sbjct: 276 TAFLGTALIDMYGKYGKLSCCSHIFH-LVRDKEVCTWNALLSALANHG 322
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 210/310 (67%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD SA LF+ M +R++V+W+++I+G+ RN CF +A+ F+ + V
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEG--VV 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE V V+SSCA L G L +G++ H Y++RN++ L++ +GTA++D+Y + G +E+A
Sbjct: 247 ANETVMVGVISSCAHL---GALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ + KDV W A+I+ LA + ++AL F EM +KG +ITF AVLTAC+ A
Sbjct: 304 VMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHA 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+VE GLE+F SM V P +EHYGC+VDLLGRAG L +A++F+ MP +P+A + A
Sbjct: 364 GMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRA 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V++ VG+ LLE+QP++ G YV+LSNI+A +W T +R+ M + G+
Sbjct: 424 LLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGV 483
Query: 301 RKIPAYSLIE 310
RK P YSLIE
Sbjct: 484 RKPPGYSLIE 493
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 36/220 (16%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ ++ +CA L N +G Q HG +++ ++ +L+ +Y VG + A
Sbjct: 115 PDNITHPFLVKACAQLENAP---MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAA 171
Query: 121 IRVFKSMVIKDVC-------------------------------TWNAMISSLASNSREK 149
VF+ M DV TW+ MIS A N+ +
Sbjct: 172 RSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFE 231
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ F+ ++ +G+ ANE V V+++CA + +G E H + + ++ + V
Sbjct: 232 KAVETFEALQAEGVVANETVMVGVISSCAHLGALAMG-EKAHEYVMRNKLSLNLILGTAV 290
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
VD+ R G + +A +P E D AL+ +HG
Sbjct: 291 VDMYARCGNVEKAVMVFEQLP-EKDVLCWTALIAGLAMHG 329
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALID--LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
K +H ++LR + VF + LI + L AIRV + ++ +NA+I +
Sbjct: 34 KIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCS 93
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++ + + + + GL + IT ++ ACA+ + +G++
Sbjct: 94 TSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQ 138
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 207/310 (66%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K+GD+ SA LF+ M ++++V+W+ +I+G+ +N F +AI ++ + V
Sbjct: 185 MVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELY--FLLQSEGVH 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV++SCA L G L LG++ H YILRN++ +++ +GTAL+D+Y + G +++A
Sbjct: 243 ANETVMVSVIASCAHL---GALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF + +D +W +I+ A + ++AL F M++ GL EITF AVL+AC+
Sbjct: 300 IWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHG 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLELF SM + + P +EHYGC+VDLLGRAG L+EA++F+ MP +P+A + GA
Sbjct: 360 GLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++ G+ L+EL+P+H G YV+LSNI+A +W ++R+ M E G+
Sbjct: 420 LLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGV 479
Query: 301 RKIPAYSLIE 310
K P Y+L E
Sbjct: 480 VKPPGYTLFE 489
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 133/306 (43%), Gaps = 41/306 (13%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F + ++ + S I GF + ++ + + N + P+ TY ++
Sbjct: 63 LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFY--VQSKRNGLVPDNLTYPFLV 120
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-------------CL 117
+C +G L +G Q HG I+R+ V++ +L+ +Y +G CL
Sbjct: 121 KAC---TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCL 177
Query: 118 E------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+ A ++F M K++ TW+ MIS A NS +A+ ++ ++
Sbjct: 178 DVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ 237
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
+G+ ANE V+V+ +CA +ELG E H + + ++ + +VD+ R G +
Sbjct: 238 SEGVHANETVMVSVIASCAHLGALELG-ERAHDYILRNKMTVNLILGTALVDMYARCGSI 296
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN 277
+A +P DA L+ +HG + E R+ + L P+ VLS
Sbjct: 297 DKAIWVFDQLPGR-DALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSA 355
Query: 278 I-HAGL 282
H GL
Sbjct: 356 CSHGGL 361
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+S L SC L + K +H +++R + VF + LI + L+ A +VF
Sbjct: 19 LSFLESCTTLSHL------KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQ 72
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ ++ +N+ I + + ++ + + K GL + +T+ ++ AC + +++G
Sbjct: 73 IQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMG 132
Query: 187 LE 188
++
Sbjct: 133 IQ 134
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 210/312 (67%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y+K GD + A +F+ M ++VVSW S+I+G + G F E++ +F+ M +G
Sbjct: 246 LVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG---- 301
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P++ T V+VL+SCA L G L LGK VH Y+ RN+I F+G AL+D+Y K G ++
Sbjct: 302 VKPDDVTLVAVLNSCANL---GVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 358
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A VF++M KDV ++ AMI LA + + +AL +F EM + G+ +E+TFV VLTAC+
Sbjct: 359 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 418
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G + F M + + P +EHYGC+VDLLGRAGL++EA+EF+R+MP EPDA VL
Sbjct: 419 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 478
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGACKIHG V+L V +++ +++P+ G YV++SNI++ RW A LRK M E
Sbjct: 479 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 538
Query: 299 GIRKIPAYSLIE 310
+ K P S IE
Sbjct: 539 NLEKTPGCSSIE 550
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 49/256 (19%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA +F+ +RD+VSWT++I G+V+ G E +
Sbjct: 193 SARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV-------------------------- 226
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
GLY I+RN V L VF+G AL+D+Y K G A +VF+ M +K+
Sbjct: 227 --------GLY--------IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 270
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
V +WN+MIS LA + KE+L MF +M+ G++ +++T VAVL +CA ++ELG + H
Sbjct: 271 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG-KWVH 329
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-- 249
+ L + ++ +VD+ + G + +A ++M D A++ +HG
Sbjct: 330 AYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN-RKDVYSYTAMIVGLAMHGQG 388
Query: 250 --AVDLCHEVGRRLLE 263
A+DL E+ + +E
Sbjct: 389 GKALDLFSEMPKMGIE 404
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 23/252 (9%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
D A+ L + ++ + +II G N E + V+K M+ + P+ T
Sbjct: 88 DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKG--IVPDNYTIPF 145
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +CA + G++VHG ++ + V++ L+ +Y + A +VF +
Sbjct: 146 VLKACA---ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSP 202
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+D+ +W MI +E + ++ + N + V A LV++ L+
Sbjct: 203 QRDLVSWTTMIQGYVKMGFAREGVGLY-------IIRNSNVNLDVFVGNA---LVDMYLK 252
Query: 189 LFHSMLGK--FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGAL 241
+ + F+ +P+ + ++ L + G E+ R M +PD L A+
Sbjct: 253 CGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAV 312
Query: 242 LGACKIHGAVDL 253
L +C G ++L
Sbjct: 313 LNSCANLGVLEL 324
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 210/312 (67%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y+K GD + A +F+ M ++VVSW S+I+G + G F E++ +F+ M +G
Sbjct: 268 LVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG---- 323
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P++ T V+VL+SCA L G L LGK VH Y+ RN+I F+G AL+D+Y K G ++
Sbjct: 324 VKPDDVTLVAVLNSCANL---GVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 380
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A VF++M KDV ++ AMI LA + + +AL +F EM + G+ +E+TFV VLTAC+
Sbjct: 381 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 440
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G + F M + + P +EHYGC+VDLLGRAGL++EA+EF+R+MP EPDA VL
Sbjct: 441 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 500
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGACKIHG V+L V +++ +++P+ G YV++SNI++ RW A LRK M E
Sbjct: 501 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 560
Query: 299 GIRKIPAYSLIE 310
+ K P S IE
Sbjct: 561 NLEKTPGCSSIE 572
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 150/256 (58%), Gaps = 12/256 (4%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA +F+ +RD+VSWT++I G+V+ G E + +F M G NL + + T V VLSS
Sbjct: 178 SARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGE-NL-QADGMTLVIVLSS 235
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
CA L G L LG+++H YI+RN V L VF+G AL+D+Y K G A +VF+ M +K+
Sbjct: 236 CARL---GDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 292
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
V +WN+MIS LA + KE+L MF +M+ G++ +++T VAVL +CA ++ELG + H
Sbjct: 293 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG-KWVH 351
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-- 249
+ L + ++ +VD+ + G + +A ++M D A++ +HG
Sbjct: 352 AYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN-RKDVYSYTAMIVGLAMHGQG 410
Query: 250 --AVDLCHEVGRRLLE 263
A+DL E+ + +E
Sbjct: 411 GKALDLFSEMPKMGIE 426
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
D A+ L + ++ + +II G N E + V+K M+ + P+ T
Sbjct: 73 DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKG--IVPDNYTIPF 130
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +CA + G++VHG ++ + V++ L+ +Y + A +VF +
Sbjct: 131 VLKACA---ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSP 187
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+D+ +W MI +E + +F EM + L+A+ +T V VL++CAR + LG +
Sbjct: 188 QRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRK 247
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
L ++ V + +VD+ + G + A++ + MP +
Sbjct: 248 LHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK 291
>gi|414877567|tpg|DAA54698.1| TPA: hypothetical protein ZEAMMB73_572803 [Zea mays]
Length = 495
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 204/304 (67%), Gaps = 2/304 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN-MMGNVNLV 59
++D GD+D A FE M RD VSWT++++G R G A+ VF+ ++GNV
Sbjct: 160 LLDALCHAGDLDGAGDFFERMAVRDPVSWTTLVSGLSRGGRHRCALEVFRGFLLGNVGR- 218
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R EAT VSV S+CA + GL G VH Y++R+EI L+ F+GTAL+D+YGK G +
Sbjct: 219 RLEEATLVSVFSACANVDGGEGLAAGMAVHAYLIRHEIELTAFLGTALVDMYGKHGRIGF 278
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
F + K+VCTWNA++S+LA++ +E +ALV FD M+ +G ++I+F+A+LTACAR
Sbjct: 279 CKSAFAVVCTKEVCTWNALLSALANHGKETDALVKFDMMRGEGFLPDQISFLALLTACAR 338
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE+GL F +M+ +++VVP+M HYGCVVDLLGRA EA + + MPF DASV G
Sbjct: 339 AGLVEVGLYWFDAMVAEYKVVPLMIHYGCVVDLLGRASRFGEAIQVIERMPFAADASVWG 398
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG V+L E+G++L+ L P+ GRYV + N++ W+ + + M+EAG
Sbjct: 399 ALLGACKLHGNVELAVEIGQKLMSLGPQQSGRYVTIRNVYLEGGNWHAGARMGEVMLEAG 458
Query: 300 IRKI 303
I+K
Sbjct: 459 IKKT 462
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE--MKEKG 162
AL+D G L+ A F+ M ++D +W ++S L+ R + AL +F + G
Sbjct: 158 NALLDALCHAGDLDGAGDFFERMAVRDPVSWTTLVSGLSRGGRHRCALEVFRGFLLGNVG 217
Query: 163 LRANEITFVAVLTACA 178
R E T V+V +ACA
Sbjct: 218 RRLEEATLVSVFSACA 233
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 204/311 (65%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K +D+A +F++M ++DVVSW+S+I+G+ +N F E + +F+ M ++ +
Sbjct: 448 MISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM--QMSGFK 505
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+CA L L GK VH YI RN + ++V +GT LID+Y K GC+E A
Sbjct: 506 PDETTLVSVISACARL---AALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETA 562
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M+ K + TWNA+I LA N + +L MF MK+ + NEITF+ VL AC
Sbjct: 563 LEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHM 622
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM+ ++ P ++HYGC+VDLLGRAG L EA+E + MP PD + GA
Sbjct: 623 GLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGA 682
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG ++ VGR+L+ELQP H G +V+LSNI+A +W+ ++R M + +
Sbjct: 683 LLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 742
Query: 301 RKIPAYSLIEA 311
KIP S+IEA
Sbjct: 743 LKIPGCSMIEA 753
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 32/264 (12%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+ ML++D+V+W+++I F +N + EAI F M +V +E VS LS+CA L
Sbjct: 332 LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV--DEVVAVSALSACANL 389
Query: 77 --VNEG----GLYLGKQVHGYI-LRNEIVL------------SVFMGTALIDL------- 110
VN G L L YI L+N ++ +F L+DL
Sbjct: 390 LVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 449
Query: 111 --YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168
Y K ++ A +F SM KDV +W++MIS A N E L +F EM+ G + +E
Sbjct: 450 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 509
Query: 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
T V+V++ACAR +E G + H+ + + + + ++D+ + G + A E
Sbjct: 510 TLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568
Query: 229 MPFEPDASVLGALLGACKIHGAVD 252
M E S AL+ ++G V+
Sbjct: 569 M-IEKGISTWNALILGLAMNGLVE 591
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VS S AG + G + K ++ + I+ S ++I L+G G + A ++F
Sbjct: 280 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIAS----NSMIVLFGMRGLVVEACKLFDE 335
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M+ KD+ TW+A+I+ N +EA+ F M + G+ +E+ V+ L+ACA +V +G
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 395
Query: 187 LELFHSM 193
+L HS+
Sbjct: 396 -KLIHSL 401
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
Query: 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR 94
+++ A ++K+M+ N + + TY ++ +C+ +E + KQVH ++L+
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSN--YLGADNYTYPLLIQACSIRRSE---WEAKQVHNHVLK 241
Query: 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM 154
V++ LI+ + + A RVF + D +WN++++ +EA +
Sbjct: 242 LGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHI 301
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+ +M E+ + A+ V R +VE +LF ML K
Sbjct: 302 YHQMPERSIIASNSMIVLF---GMRGLVVE-ACKLFDEMLEK 339
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ A LF+ M RDVV+W+++I+G+ + EA+ +F M + V
Sbjct: 261 LIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM--QLAEVE 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G L GK VH YI R + L++ +GTAL+D Y K GC++ A
Sbjct: 319 PNDVTMVSVLSACAVL---GALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+SM +K+ TW A+I +A+N R +EAL +F M++ + ++TF+ VL AC+ +
Sbjct: 376 VEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHS 435
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + + P EHYGCVVDLLGRAGL+ EA +F+R+MP EP+A + A
Sbjct: 436 CLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRA 495
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C +H V++ E ++++ L P H G Y++LSNI+A + +W A +RK M + GI
Sbjct: 496 LLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGI 555
Query: 301 RKIPAYSLIE 310
K P SLIE
Sbjct: 556 EKTPGCSLIE 565
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 139/264 (52%), Gaps = 14/264 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D+ +A LLF+ + + VV W +II +++NG + E + +FK M+ V V
Sbjct: 160 LIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGML-EVG-VA 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++C + G LGK V Y+ +V + + TALID+Y K G L +A
Sbjct: 218 FDEITLVSVVTACGRI---GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV W+AMIS + +EAL +F EM+ + N++T V+VL+ACA
Sbjct: 275 RRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVL 334
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + HS + + + + +VD + G + +A E SMP + ++ A
Sbjct: 335 GALETG-KWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTA 392
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL 264
L+ +G GR LEL
Sbjct: 393 LIKGMATNGR-------GREALEL 409
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ + G +A+ +F M+ +V V P++ T L SC+ + L +G+ + Y
Sbjct: 89 LMRALLHAGHPEDALHLFVEML-DVASVCPDQHTVACALKSCSRMCT---LDVGRGIQAY 144
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++ ++ F+ ++LI +Y + A +F ++ V WNA+I++ N E
Sbjct: 145 AVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEV 204
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ MF M E G+ +EIT V+V+TAC R +LG
Sbjct: 205 VEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG 239
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 204/311 (65%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K +D+A +F++M ++DVVSW+S+I+G+ +N F E + +F+ M ++ +
Sbjct: 313 MISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM--QMSGFK 370
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+CA L L GK VH YI RN + ++V +GT LID+Y K GC+E A
Sbjct: 371 PDETTLVSVISACARL---AALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETA 427
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M+ K + TWNA+I LA N + +L MF MK+ + NEITF+ VL AC
Sbjct: 428 LEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHM 487
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM+ ++ P ++HYGC+VDLLGRAG L EA+E + MP PD + GA
Sbjct: 488 GLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGA 547
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG ++ VGR+L+ELQP H G +V+LSNI+A +W+ ++R M + +
Sbjct: 548 LLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 607
Query: 301 RKIPAYSLIEA 311
KIP S+IEA
Sbjct: 608 LKIPGCSMIEA 618
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 32/264 (12%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+ ML++D+V+W+++I F +N + EAI F M +V +E VS LS+CA L
Sbjct: 197 LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV--DEVVAVSALSACANL 254
Query: 77 --VNEG----GLYLGKQVHGYI-LRNEIVL------------SVFMGTALIDL------- 110
VN G L L YI L+N ++ +F L+DL
Sbjct: 255 LVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 314
Query: 111 --YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168
Y K ++ A +F SM KDV +W++MIS A N E L +F EM+ G + +E
Sbjct: 315 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 374
Query: 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
T V+V++ACAR +E G + H+ + + + + ++D+ + G + A E
Sbjct: 375 TLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 433
Query: 229 MPFEPDASVLGALLGACKIHGAVD 252
M E S AL+ ++G V+
Sbjct: 434 M-IEKGISTWNALILGLAMNGLVE 456
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VS S AG + G + K ++ + I+ S ++I L+G G + A ++F
Sbjct: 145 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIAS----NSMIVLFGMRGLVVEACKLFDE 200
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M+ KD+ TW+A+I+ N +EA+ F M + G+ +E+ V+ L+ACA +V +G
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260
Query: 187 LELFHSM 193
+L HS+
Sbjct: 261 -KLIHSL 266
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W +I +++ A ++K+M+ N + + TY ++ +C+ +E + KQV
Sbjct: 46 WNMMIRAYIQTNSPHFAFTLYKSMLSN--YLGADNYTYPLLIQACSIRRSE---WEAKQV 100
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H ++L+ V++ LI+ + + A RVF + D +WN++++
Sbjct: 101 HNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNV 160
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+EA ++ +M E+ + A+ +++ LV +LF ML K
Sbjct: 161 EEAKHIYHQMPERSIIASN----SMIVLFGMRGLVVEACKLFDEMLEK 204
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 207/310 (66%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+G K G++ A LF+ M +RD +SW+S+++G++ G + EA+ +F+ M R
Sbjct: 234 MINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE--TR 291
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P SVL++C+ N G + G+ VH Y+ RN I L +GTAL+D+Y K G L+
Sbjct: 292 PGRFILSSVLAACS---NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMG 348
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +++ TWNAMI LA + R ++AL +F +++E ++ N IT V VLTACA A
Sbjct: 349 WEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL +F +M + V P +EHYGC+VDLLGR+GL SEA++ + SMP +P+A+V GA
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGA 468
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG DL VG+ LLEL+P++ GRYV+LSNI+A + R++ + +RK M + GI
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528
Query: 301 RKIPAYSLIE 310
+ +P S+++
Sbjct: 529 KTVPGVSIVD 538
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 44/216 (20%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
+ D A+ +F ++ +V W +I G + N +AI + M+ + RPN+ TY ++
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA---RPNKFTYPTL 138
Query: 70 LSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA--------------------- 106
+C A V EG +Q+HG+++++ I V + +A
Sbjct: 139 FKACSVAQAVQEG-----RQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSG 193
Query: 107 ---------LIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
+ID Y K G LE A +F M +K++ +WN MI+ LA +A +FDE
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
M E+ +EI++ +++ A + LE+F M
Sbjct: 254 MSER----DEISWSSMVDGYISAGRYKEALEIFQQM 285
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 208/310 (67%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K GD++SA LF+ M ++++V+W+++I+G+ +N F +A+ +FK + VR
Sbjct: 191 MIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQG--VR 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L LG++ H Y+++N + L++ +GTAL+D+Y + G +++A
Sbjct: 249 ANETVMVSVISSCAHL---GALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ + +D +W A+I+ LA + + +L F M E GL +ITF AVL+AC+
Sbjct: 306 VWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F SM V P +EHYGC+VDLLGRAG L EA+ F+ MP +P+A V GA
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGA 425
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++ VG+ L++L P+H G YV+LSNI+A + W + T++R+ M G+
Sbjct: 426 LLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGL 485
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 486 KKPPGHSLIE 495
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 39/256 (15%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
P+ T+ ++ SC L + +G Q HG+I+++ V++ +L+ +Y
Sbjct: 117 PDNLTFPFLVKSCTKL---HCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
K G +E A ++F M K++ TW+ MIS A N+
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F ++ +G+RANE V+V+++CA +ELG E H + K + + +
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG-ERAHDYVVKNGMTLNLILGTAL 292
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPK 267
VD+ R G + +A +P E D AL+ +HG + + ++E L P+
Sbjct: 293 VDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351
Query: 268 HCGRYVVLSNI-HAGL 282
VLS H GL
Sbjct: 352 DITFTAVLSACSHGGL 367
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 13/222 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALI----DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
K +H Y++R I+ VF + LI D ++ A R+F + ++ +NAMI
Sbjct: 34 KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRG 93
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVV 200
+ + +A + + + +GL + +TF ++ +C + + +G + H + FE
Sbjct: 94 HSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKD 153
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260
++ +V + G A + M + S + G K G V E R+
Sbjct: 154 VYVQ--NSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKC-GDV----ESARK 206
Query: 261 LLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
L + P K+ + + + +A +++A +L K + G+R
Sbjct: 207 LFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 203/309 (65%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+K G+++ A +F+ M +++V+SWTS+I GFVR G EA+C+ + M+ V ++
Sbjct: 183 MIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQML--VAGIK 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T LS+CAGL G L GK +H YI +N+I + +G ALID+Y K G +++A
Sbjct: 241 PDKITLSCSLSACAGL---GALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + K V TW A+I A + + EAL F +M++ G++ TF AVLTAC+
Sbjct: 298 LLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHT 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM + + P+MEHYGC+VDLLGRAG L EAKEF+ SMP +P+A++ G+
Sbjct: 358 GLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGS 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +H ++L E+G+ L+EL P+H GRY+ L++IHA W+ A+ +R + G+
Sbjct: 418 LLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGL 477
Query: 301 RKIPAYSLI 309
+P S I
Sbjct: 478 LNLPGCSTI 486
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 107/247 (43%), Gaps = 43/247 (17%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++ A ++F+ + + V W ++I + + EA+ ++ M+ + + N T+ +
Sbjct: 60 NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHS--IPHNAYTFPFL 117
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L +C+ L L Q+H I++ V+ +L+ +Y G ++ A +F +
Sbjct: 118 LKACSAL---SALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPS 174
Query: 130 KDVCTWNAMIS-------------------------------SLASNSREKEALVMFDEM 158
+D+ +WN MI KEAL + +M
Sbjct: 175 RDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQM 234
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG--KFEVVPIMEHYGC-VVDLLGR 215
G++ ++IT L+ACA +E G + H+ +G K ++ P++ GC ++D+ +
Sbjct: 235 LVAGIKPDKITLSCSLSACAGLGALEQG-KWIHTYIGKNKIKIDPVL---GCALIDMYVK 290
Query: 216 AGLLSEA 222
G + +A
Sbjct: 291 CGEMKKA 297
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
MG + L++ N +S+L C+ N G L KQ+HG +L+ + + L+ Y
Sbjct: 1 MGTLQLLQLNVEQTMSLLERCS---NIGEL---KQIHGQLLKKGTIRHKLTVSRLLTTYA 54
Query: 113 KV--GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF 170
+ L A VF + + WN MI + ++++ +EAL+++ +M + N TF
Sbjct: 55 SMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTF 114
Query: 171 VAVLTACA 178
+L AC+
Sbjct: 115 PFLLKACS 122
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 206/310 (66%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+G K G++ A LF+ M +RD +SW+S+++G++ G + EA+ +F+ M R
Sbjct: 234 MINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE--TR 291
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P SVL++C+ N G + G+ VH Y+ RN I L +GTAL+D+Y K G L+
Sbjct: 292 PGRFILSSVLAACS---NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMG 348
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +++ TWNAMI LA + R ++AL +F +++E ++ N IT V VLTACA A
Sbjct: 349 WEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL +F +M + V P +EHYGC+VDLLGR+GL SEA++ + SMP +P+A+V GA
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGA 468
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG DL VG+ LLEL+P++ GRYV+LSNI+A + R++ + +RK M GI
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI 528
Query: 301 RKIPAYSLIE 310
+ +P S+++
Sbjct: 529 KTVPGVSIVD 538
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 44/216 (20%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
+ D A+ +F ++ +V W +I G + N +AI + M+ + RPN+ TY ++
Sbjct: 82 NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA---RPNKFTYPTL 138
Query: 70 LSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA--------------------- 106
+C A V EG +Q+HG+++++ I V + +A
Sbjct: 139 FKACSVAQAVQEG-----RQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSG 193
Query: 107 ---------LIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
+ID Y K G LE A +F M +K++ +WN MI+ LA +A +FDE
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
M E+ +EI++ +++ A + LE+F M
Sbjct: 254 MSER----DEISWSSMVDGYISAGRYKEALEIFQQM 285
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 204/310 (65%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G ++ A F+ M +RD +SW+++I+G+++ GCF EA+ +F M +R
Sbjct: 242 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK--IR 299
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SVLS+CA L G L G+ +H Y RN I L +GT+L+D+Y K G ++ A
Sbjct: 300 PRKFVLPSVLSACANL---GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLA 356
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M K+V +WNAMI LA + R ++A+ +F +M + NEITFV VL ACA
Sbjct: 357 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHG 413
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F+SM ++ V P +EHYGC+VDLLGRAGLL+EA++ + S+P EP +V GA
Sbjct: 414 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 473
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V+L VG+ LLEL+P++ GRY +LSNI+A RW ++RK M E GI
Sbjct: 474 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 533
Query: 301 RKIPAYSLIE 310
+ P S+I+
Sbjct: 534 KTTPGTSIID 543
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 46/218 (21%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+S++ +F+ + K +V W +I + N +AI ++ MM V RPN+ TY +VL
Sbjct: 87 FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMM--VAHFRPNKYTYPAVL 144
Query: 71 SSC--AGLVNEGGLYLGKQVH-----------GYILRNEIVLSVFMG------------- 104
+C AG+V EG QVH G+IL + I + G
Sbjct: 145 KACSDAGVVAEG-----VQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG 199
Query: 105 --------TALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMF 155
A+ID Y + G +E A +F+ M + + TWNAMIS + + A F
Sbjct: 200 GEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFF 259
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
DEMKE+ +EI++ A++ + LE+FH M
Sbjct: 260 DEMKER----DEISWSAMIDGYIQEGCFMEALEIFHQM 293
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGC-----LERAIRVFKSMVIKDVCTWNAMIS 140
KQ H ILR + ++ +L+ Y V E ++RVF + +V WN MI
Sbjct: 51 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
N+ +A++++ EM R N+ T+ AVL AC+ A +V G+++ H+ L K +
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV-HAHLVKHGLG 169
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260
+ + G L EA+ + E DA A++ G V E R
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV----EAARE 225
Query: 261 LLELQP 266
L E P
Sbjct: 226 LFEGMP 231
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
A+I + + G +E A F M +D +W+AMI EAL +F +M+++ +R
Sbjct: 240 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 299
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ +VL+ACA ++ G H+ + + +VD+ + G + A E
Sbjct: 300 PRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE 358
Query: 225 FMRSMPFEPDASVLGALLGACKIHG----AVDL 253
M + S A++G +HG A+DL
Sbjct: 359 VFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDL 390
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 204/310 (65%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G ++ A F+ M +RD +SW+++I+G+++ GCF EA+ +F M +R
Sbjct: 243 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK--IR 300
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SVLS+CA L G L G+ +H Y RN I L +GT+L+D+Y K G ++ A
Sbjct: 301 PRKFVLPSVLSACANL---GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLA 357
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M K+V +WNAMI LA + R ++A+ +F +M + NEITFV VL ACA
Sbjct: 358 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHG 414
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F+SM ++ V P +EHYGC+VDLLGRAGLL+EA++ + S+P EP +V GA
Sbjct: 415 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 474
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V+L VG+ LLEL+P++ GRY +LSNI+A RW ++RK M E GI
Sbjct: 475 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 534
Query: 301 RKIPAYSLIE 310
+ P S+I+
Sbjct: 535 KTTPGTSIID 544
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 42/216 (19%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+S++ +F+ + K +V W +I + N +AI ++ M+ V RPN+ TY +VL
Sbjct: 88 FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMV--VAHSRPNKYTYPAVL 145
Query: 71 SSCAGLVNEGGLYLGKQVH-----------GYILRNEIVLSVFMG--------------- 104
+C+ + G + G QVH G+IL + I + G
Sbjct: 146 KACS---DSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 202
Query: 105 ------TALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDE 157
A+ID Y + G +E A +F+ M + + TWNAMIS + + A FDE
Sbjct: 203 VDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDE 262
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
MKE+ +EI++ A++ + LE+FH M
Sbjct: 263 MKER----DEISWSAMIDGYIQEGCFMEALEIFHQM 294
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGC-----LERAIRVFKSMVIKDVCTWNAMIS 140
KQ H ILR + ++ +L+ Y V E ++RVF + +V WN MI
Sbjct: 52 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
N+ +A++++ EM R N+ T+ AVL AC+ + +V G+++ H+ L K +
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQV-HAHLVKHGLG 170
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260
+ + G L EA+ + E DA A++ G V E R
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV----EAARE 226
Query: 261 LLELQP 266
L E P
Sbjct: 227 LFEGMP 232
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
A+I + + G +E A F M +D +W+AMI EAL +F +M+++ +R
Sbjct: 241 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 300
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ +VL+ACA ++ G H+ + + +VD+ + G + A E
Sbjct: 301 PRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWE 359
Query: 225 FMRSMPFEPDASVLGALLGACKIHG----AVDL 253
M + S A++G +HG A+DL
Sbjct: 360 VFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDL 391
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 199/309 (64%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+K G++D A +F+ M +++V+SWT++I GFVR G EA+ + + M+ V ++
Sbjct: 182 MIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQML--VAGIK 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T LS+CAGL G L GK +H YI +NEI + +G L D+Y K G +E+A
Sbjct: 240 PDSITLSCSLSACAGL---GALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + K VC W A+I LA + + +EAL F +M++ G+ N ITF A+LTAC+ A
Sbjct: 297 LLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHA 356
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L E G LF SM + + P MEHYGC+VDL+GRAGLL EA+EF+ SMP +P+A++ GA
Sbjct: 357 GLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGA 416
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +L E+G+ L+EL P H GRY+ L++I+A WN+ +R + G+
Sbjct: 417 LLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGL 476
Query: 301 RKIPAYSLI 309
P S I
Sbjct: 477 LNHPGCSSI 485
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 43/241 (17%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
++F+++ + V W +++ + + A+ ++ M+ N V N T+ +L +C+
Sbjct: 65 VVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNS--VPHNSYTFPFLLKACSA 122
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
L +Q+H +I++ L V+ +L+ +Y G ++ A +F + +D+ +W
Sbjct: 123 L---SAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSW 179
Query: 136 NAMISSLASNSR-------------------------------EKEALVMFDEMKEKGLR 164
N MI KEAL + +M G++
Sbjct: 180 NIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIK 239
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV--PIMEHYGCVV-DLLGRAGLLSE 221
+ IT L+ACA +E G + H+ + K E+ P++ GCV+ D+ + G + +
Sbjct: 240 PDSITLSCSLSACAGLGALEQG-KWIHTYIEKNEIKIDPVL---GCVLTDMYVKCGEMEK 295
Query: 222 A 222
A
Sbjct: 296 A 296
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++ A LF+ M RDVV+W+++I+G+ + EA+ +F M + V
Sbjct: 262 LMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM--QLARVE 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G L GK VH Y+ R + L+ +GTAL+D Y K GC++ A
Sbjct: 320 PNDVTMVSVLSACAVL---GALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDA 376
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+SM +K+ TW A+I +A+N R +EAL +F M+E G+ ++TF+ VL AC+ +
Sbjct: 377 VEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHS 436
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + + P +EHYGC+VDLLGRAGL+ EA +F+R+MP EP+A + A
Sbjct: 437 CLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRA 496
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C +H V + E ++++ L P H G YV+LSNI+A +W A +RK M + GI
Sbjct: 497 LLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGI 556
Query: 301 RKIPAYSLIE 310
K P SLIE
Sbjct: 557 EKTPGCSLIE 566
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 6/232 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+ +A L+F+ + VV W +I+ +++NG + E + +FK M+ V V
Sbjct: 161 LIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGML-EVG-VA 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++C + G LGK V G++ + + + TAL+D+Y K G + +A
Sbjct: 219 FDEVTLVSVVTACGRI---GDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKA 275
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV W+AMIS + +EAL +F EM+ + N++T V+VL+ACA
Sbjct: 276 RRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVL 335
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+E G + HS + + + +VD + G + +A E SMP +
Sbjct: 336 GALETG-KWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVK 386
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ F+ G +A+ +F M+ + ++ T L SC+ + L +G+ V Y
Sbjct: 89 LMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMC---ALDVGRGVQAY 145
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++ +V F+ ++LI +Y G + A VF + V WNA++++ N E
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ MF M E G+ +E+T V+V+TAC R +LG
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG 240
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 200/310 (64%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY NGD+++ LFE M +R+V SW +I G+ NGCF E + FK M+ + LV
Sbjct: 257 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID-GLVV 315
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y S+++G ALID+Y K G +E A
Sbjct: 316 PNDATLVTVLSACARL---GALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENA 372
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+SM +KD+ TWN+MI LA++ +AL +F +MK G + + ITF+ VL +C
Sbjct: 373 MEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHL 432
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F+SM+ ++ + P +EHYGC+VDL GRAGLL A EF++ MP E DA + A
Sbjct: 433 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAA 492
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ +DL ++L+ L+PK+ YV+LSNI+ L RW L+ M + G
Sbjct: 493 LLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGS 552
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 553 KKLPGCSLIE 562
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 117/289 (40%), Gaps = 51/289 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V M A LF++ V W +I G+ N + E + +F M VR
Sbjct: 63 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD--VR 120
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK------- 113
PN T+ VL SCA + G G+++H +++ + + F+ T LID+Y
Sbjct: 121 PNCFTFPLVLKSCAKI---GAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSA 177
Query: 114 ----VGCLERAIRVFKSMVI--------------------KDVCTWNAMISSLASNSREK 149
VG LER I + SM+ +DV WN M+S K
Sbjct: 178 YKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMK 237
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FE---VVPIME 204
A +FD M + + +++ +L A VE +LF M + F ++
Sbjct: 238 AARKLFDTMPYR----DTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 293
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
H GC + +L K + P+ + L +L AC GA+DL
Sbjct: 294 HNGCFFE------VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 336
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
E ++S+L SC + L ++V I+ + + ++ ++ + + + A
Sbjct: 25 EEHFISLLRSCKTVA------LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARH 78
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F V WNA+ N+ +E + +F +MK +R N TF VL +CA+
Sbjct: 79 LFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAK 135
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 200/310 (64%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY NGD+++ LFE M +R+V SW +I G+ NGCF E + FK M+ + LV
Sbjct: 299 MLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID-GLVV 357
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y S+++G ALID+Y K G +E A
Sbjct: 358 PNDATLVTVLSACARL---GALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENA 414
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+SM +KD+ TWN+MI LA++ +AL +F +MK G + + ITF+ VL +C
Sbjct: 415 MEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHL 474
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F+SM+ ++ + P +EHYGC+VDL GRAGLL A EF++ MP E DA + A
Sbjct: 475 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAA 534
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ +DL ++L+ L+PK+ YV+LSNI+ L RW L+ M + G
Sbjct: 535 LLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGS 594
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 595 KKLPGCSLIE 604
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 117/289 (40%), Gaps = 51/289 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V M A LF++ V W +I G+ N + E + +F M VR
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD--VR 162
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK------- 113
PN T+ VL SCA + G G+++H +++ + + F+ T LID+Y
Sbjct: 163 PNCFTFPLVLKSCAKI---GAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSA 219
Query: 114 ----VGCLERAIRVFKSMVI--------------------KDVCTWNAMISSLASNSREK 149
VG LER I + SM+ +DV WN M+S K
Sbjct: 220 YKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMK 279
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FE---VVPIME 204
A +FD M + + +++ +L A VE +LF M + F ++
Sbjct: 280 AARKLFDTMPYR----DTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 335
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
H GC + +L K + P+ + L +L AC GA+DL
Sbjct: 336 HNGCFFE------VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 378
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
E ++S+L SC + L ++V I+ + + ++ ++ + + + A
Sbjct: 67 EEHFISLLRSCKTVA------LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARH 120
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F V WNA+ N+ +E + +F +MK +R N TF VL +CA+
Sbjct: 121 LFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAK 177
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+VK G+++ A LF M RDVVSW S++ + + G EA+ +F M V+
Sbjct: 329 MLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG--VK 386
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P EAT VS+LS+CA L G L G +H YI N I ++ +GTAL+D+Y K G + A
Sbjct: 387 PTEATVVSLLSACAHL---GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 443
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M KDV WN +I+ +A + KEA +F EMKE G+ N+ITFVA+L+AC+ A
Sbjct: 444 TQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHA 503
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G +L M + + P +EHYGCV+DLL RAG L EA E + +MP EP+ S LGA
Sbjct: 504 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGA 563
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IHG +L VG+RL+ LQP H GRY++LSNI+A ++W+ A +R M GI
Sbjct: 564 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 623
Query: 301 RKIPAYSLIE 310
K+P S+IE
Sbjct: 624 SKVPGVSVIE 633
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 26/289 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D+ +A LF RDVVSW ++I+G+V++ G A VF M V
Sbjct: 236 LIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM------VC 289
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ ++ ++++ A G ++E + ++ +L+ F+ K G +E
Sbjct: 290 RDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFV---------KCGNVE 340
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M +DV +WN+M++ A + EAL +FD+M+ G++ E T V++L+ACA
Sbjct: 341 DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACA 400
Query: 179 RAQLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
++ GL L H+ + + EV I+ +VD+ + G +S A + +M + D
Sbjct: 401 HLGALDKGLHL-HTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESK-DVL 456
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ IHG V ++ + + E ++P +LS HAG+
Sbjct: 457 AWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGM 505
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 78/352 (22%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A +F ++ + S+I + EA+ ++ M+ + ++P+ TY V+ +C
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG--LKPDHMTYPFVIKAC 205
Query: 74 AGLVNEGGL-YLGKQVHGYILRNEIVLSVFMGTALIDLY--------------------- 111
NE + + G VH +++++ ++ ++LI LY
Sbjct: 206 ----NESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDV 261
Query: 112 --------GKVGCLE--RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
G V +E A VF MV +DV +WN MI+ A + EA +FDEM E+
Sbjct: 262 VSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER 321
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
L +++ ++L + VE LF M + +VV C G+
Sbjct: 322 NL----VSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQ-CGKPNEALA 375
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVD---------------LCHEVGRRLLELQP 266
+ MR++ +P + + +LL AC GA+D + VG L+++
Sbjct: 376 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 435
Query: 267 KHCGRYVVLSNIHAGLER-----WN-------------RATDLRKAMVEAGI 300
K CG+ + + + +E WN A L K M EAG+
Sbjct: 436 K-CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGV 486
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A +F + +N++I +L+S+ EAL ++ M + GL+ + +T+ V+ A
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204
Query: 177 CARAQLVELGLELFHSMLGK 196
C + + GL L H+ + K
Sbjct: 205 CNESSVTWFGL-LVHTHVVK 223
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 204/311 (65%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY++ G + A +LF +M ++DVVSW+++I+G+ ++ CF EA+ +F+ M ++ VR
Sbjct: 343 MISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEM--QLHGVR 400
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E VS +S+C L L LGK +H YI RN++ ++V + T LID+Y K GC+E A
Sbjct: 401 PDETALVSAISACTHLAT---LDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENA 457
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF +M K V TWNA+I LA N +++L MF +MK+ G NEITF+ VL AC
Sbjct: 458 LEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHM 517
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F+SM+ + ++ ++HYGC+VDLLGRAGLL EA+E + SMP PD + GA
Sbjct: 518 GLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGA 577
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ H ++ +GR+L++LQP H G +V+LSNI+A W ++R M + G+
Sbjct: 578 LLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGV 637
Query: 301 RKIPAYSLIEA 311
K P S+IEA
Sbjct: 638 VKTPGCSMIEA 648
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN----- 55
++ GYV+ G+++ A +FE M +R+ ++ S+I F R GC +A +F + G
Sbjct: 177 LLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMV 236
Query: 56 -----VNLVRPNE---------------------ATYVSVLSSCAGLVNEGGLYLGKQVH 89
V+ NE VS LS+C+ ++N + +G+ VH
Sbjct: 237 SWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLN---VEMGRWVH 293
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK------------------------ 125
G ++ + V + ALI LY G + A R+F
Sbjct: 294 GLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSI 353
Query: 126 --------SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
SM KDV +W+AMIS A + EAL +F EM+ G+R +E V+ ++AC
Sbjct: 354 QDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISAC 413
Query: 178 ARAQLVELGLELFHSMLG--KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
++LG + H+ + K +V I+ ++D+ + G + A E +M E
Sbjct: 414 THLATLDLG-KWIHAYISRNKLQVNVILS--TTLIDMYMKCGCVENALEVFYAME-EKGV 469
Query: 236 SVLGALLGACKIHGAVD 252
S A++ ++G+V+
Sbjct: 470 STWNAVILGLAMNGSVE 486
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 14 AILLFENMLKRDVVSWTSIING--FVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
++ +F ++ + +W +I+ +++N +A+ +K + + +P+ TY +L
Sbjct: 57 SLRIFNHLRNPNTFTWNTIMRAHLYLQNSPH-QALLHYKLFLAS--HAKPDSYTYPILLQ 113
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
CA V+E + G+Q+H + + + V++ L++LY G + A RVF+ + D
Sbjct: 114 CCAARVSE---FEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLD 170
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
+ +WN +++ +EA +F+ M E+ N I +++ R VE +F+
Sbjct: 171 LVSWNTLLAGYVQAGEVEEAERVFEGMPER----NTIASNSMIALFGRKGCVEKARRIFN 226
Query: 192 SMLGK 196
+ G+
Sbjct: 227 GVRGR 231
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 199/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G +K G ++ A LF+ M ++D+VSW+++I+G+ ++ CF E + +F M + +R
Sbjct: 376 MISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM--QLGQIR 433
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E VSV+S+C L L GK VH YI +N + ++V +GT L+D+Y K GC+E A
Sbjct: 434 PDETILVSVISACTHL---AALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENA 490
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M K V +WNA+I LA N + +L MF EMK G+ NEITF+ VL AC
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 550
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM+ K + P ++HYGC+VDLLGRAGLL+EA++ + SMP PD + GA
Sbjct: 551 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 610
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG ++ VGR+L+ELQP H G +V+LSNI A W ++R M + G+
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 670
Query: 301 RKIPAYSLIEA 311
K P SLIEA
Sbjct: 671 VKTPGCSLIEA 681
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 73/313 (23%)
Query: 4 GYVKNGDMDSAILLFENMLKR-------------------------------DVVSWTSI 32
GYVK GD++ A L+F+ M +R D+VSW+++
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275
Query: 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
I+G+ +NG + EA+ +F M N N +R +E VSVLS+CA L + GK +HG +
Sbjct: 276 ISGYEQNGMYEEALVMFIEM--NANGMRLDEVVVVSVLSACAHL---SIVKTGKMIHGLV 330
Query: 93 LRNEIVLSVFMGTALIDLYG-------------------------------KVGCLERAI 121
+R I V + ALI +Y K G +E+A
Sbjct: 331 IRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKAR 390
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+F M KD+ +W+A+IS A + E L +F EM+ +R +E V+V++AC
Sbjct: 391 ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLA 450
Query: 182 LVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ G + H+ + K +V I+ ++D+ + G + A E M E S
Sbjct: 451 ALDQG-KWVHAYIRKNGLKVNVILG--TTLLDMYMKCGCVENALEVFNGME-EKGVSSWN 506
Query: 240 ALLGACKIHGAVD 252
AL+ ++G V+
Sbjct: 507 ALIIGLAVNGLVE 519
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 50/267 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y G+M A LF+ D VSW SI+ G+V+ G EA +F + M N+V
Sbjct: 182 LINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIF-DQMPQRNIVA 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++I L GK+G + A
Sbjct: 241 SN-------------------------------------------SMIVLLGKMGQVMEA 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KD+ +W+A+IS N +EALVMF EM G+R +E+ V+VL+ACA
Sbjct: 258 WKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHL 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G ++ H ++ + + + ++ + +G + +A++ D +
Sbjct: 318 SIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG-SHNLDQISWNS 375
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPK 267
++ C G+V E R L ++ P+
Sbjct: 376 MISGCMKCGSV----EKARALFDVMPE 398
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D ++ +F+ + + W +++ ++++ +A+ ++K M+ N V P+ TY V+
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNN--VGPDNYTYPLVV 148
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA + E G GK++H ++L+ V++ LI++Y G + A ++F +
Sbjct: 149 QACAVRLLEFG---GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL 205
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
D +WN++++ +EA ++FD+M ++ + A+ V
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIV 246
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+VK G+++ A LF M RDVVSW S++ + + G EA+ +F M V+
Sbjct: 134 MLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVK 191
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P EAT VS+LS+CA L G L G +H YI N I ++ +GTAL+D+Y K G + A
Sbjct: 192 PTEATVVSLLSACAHL---GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M KDV WN +I+ +A + KEA +F EMKE + N+ITFVA+L+AC+ A
Sbjct: 249 TQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHA 308
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G +L M + + P +EHY CV+DLL RAGLL EA E + +MP EP+ S LGA
Sbjct: 309 GMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGA 368
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IHG +L VG+RL+ LQP H GRY++LSNI+A ++W+ A +R M GI
Sbjct: 369 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 428
Query: 301 RKIPAYSLIE 310
K+P S+IE
Sbjct: 429 SKVPGVSVIE 438
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 53/287 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYVK G+M ++F+ M+ RDV+SW +IING+ G EA +F M
Sbjct: 72 MIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEM-------- 123
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS S +G V K G +E A
Sbjct: 124 -PERNLVSWNSMLSGFV-----------------------------------KCGNVEEA 147
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +WN+M++ A + EAL +FD+M+ G++ E T V++L+ACA
Sbjct: 148 FGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHL 207
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ GL L H+ + + EV I+ +VD+ + G +S A + +M + D
Sbjct: 208 GALDKGLHL-HTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAMESK-DVLAW 263
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ IHG V ++ + + E ++P +LS HAG+
Sbjct: 264 NTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGM 310
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 48/223 (21%)
Query: 65 TYVSVLSSCAGLVNEGGL-YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
TY V+ +C NE + + G VH +++++ ++ +LI LY L A ++
Sbjct: 2 TYPFVIKAC----NESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQL 57
Query: 124 FKSMVIKDVCTWNAMISSLASN-------------------------------SREKEAL 152
F +DV +WNAMI + EA
Sbjct: 58 FSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAK 117
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+FDEM E+ L +++ ++L+ + VE LF M + +VV C
Sbjct: 118 RLFDEMPERNL----VSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLAC---- 168
Query: 213 LGRAGLLSEAK---EFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ G +EA + MR++ +P + + +LL AC GA+D
Sbjct: 169 YAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALD 211
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 270 bits (689), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 205/311 (65%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLV 59
++D Y K G +D+A LF+ M +RDVV+W+++I+G+ + EA+ +F M N++
Sbjct: 266 LVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID-- 323
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T VS+LSSCA L G L GK VH +I + + L+V +GTAL+D Y K G +E
Sbjct: 324 -PNEITMVSILSSCAVL---GALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVES 379
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+I VF M +K+V +W +I LASN + K+AL F M EK + N++TF+ VL+AC+
Sbjct: 380 SIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G +LF SM F + P +EHYGC+VD+LGRAGL+ EA +F+++MP +P+A +
Sbjct: 440 AGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWR 499
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL +CK+H V++ E ++L+ L+P H G Y++LSNI+A + RW A +R M E G
Sbjct: 500 TLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKG 559
Query: 300 IRKIPAYSLIE 310
I+K P SLIE
Sbjct: 560 IKKTPGCSLIE 570
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 127/230 (55%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G+++ A +F+ M +R+V +W S+ G+ ++G + E + +F M+ +R
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD--IR 222
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSVL++C L + L LG+ ++ Y+ + + + T+L+D+Y K G ++ A
Sbjct: 223 FDEVTLVSVLTACGRLAD---LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTA 279
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV W+AMIS + SR +EAL +F EM++ + NEIT V++L++CA
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVL 339
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+E G + H + K + + ++D + G + + E MP
Sbjct: 340 GALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 13/254 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
MD A+ +F + + D ++ +I GF EAI +FK M + N V+P+E T+ +L
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEM--HENSVQPDEFTFPCIL 131
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
C+ L L G+Q+H I++ F+ LI +Y G +E A RVF M +
Sbjct: 132 KVCSRL---QALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSER 188
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V TWN+M + + +E + +F EM E +R +E+T V+VLTAC R +ELG +
Sbjct: 189 NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWIN 248
Query: 191 HSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG----AC 245
+ K + P + +VD+ + G + A+ M D A++ A
Sbjct: 249 RYVEEKGLKGNPTL--ITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQAS 305
Query: 246 KIHGAVDLCHEVGR 259
+ A+DL HE+ +
Sbjct: 306 RCREALDLFHEMQK 319
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY K+G + A LF+ M +++ VSW+++I G+ + G F EA+ +F +M + R
Sbjct: 185 VINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM--QIAGFR 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN V L++CA L G L G+ +H Y+ RN +VL +GTALID+Y K GC+E A
Sbjct: 243 PNHGAIVGALTACAFL---GALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M+ +DV + ++IS LA++ A+ MF M+ +G+ NE+TF+ +L+AC+R
Sbjct: 300 CRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRV 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL +F SM + + P+++HYGC+VDLLGRAG+L +AK +R MP EPD+ VLGA
Sbjct: 360 GLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG V+L E L E H G +V+LSN++A +W +RK M E +
Sbjct: 420 LLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKV 479
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 480 KKVPGCSLIE 489
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 38/273 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
GD+ A LLF ++ +R W +++ F + ++K M+ L PN T+
Sbjct: 60 QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL--PNNYTFS 117
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L +CA L + L G +H +R F+ L+ LY C++ A R+F
Sbjct: 118 FLLQACAQLSD---LSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGS 174
Query: 128 VIKDVCTW-------------------------------NAMISSLASNSREKEALVMFD 156
V +DV TW +AMI+ A +EAL +F+
Sbjct: 175 VNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFN 234
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
+M+ G R N V LTACA ++ G H+ + + +V ++D+ +
Sbjct: 235 DMQIAGFRPNHGAIVGALTACAFLGALDQG-RWIHAYVDRNRMVLDRILGTALIDMYAKC 293
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G + A M + D +L+ HG
Sbjct: 294 GCVETACRVFDEM-LDRDVFAFTSLISGLANHG 325
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/310 (44%), Positives = 195/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GY NGD+ + LFE M +R+V SW ++I G+ RNGCF E + FK M+ + +V
Sbjct: 185 VLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVV- 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y + +V++ AL+D+Y K G +E A
Sbjct: 244 PNDATLVNVLSACARL---GALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFKSM KD+ +WN +I LA + +AL +F MK G + ITF+ +L AC
Sbjct: 301 LDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHM 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + +VP +EHYGC+VDLLGRAGLL+ A +F+R MP E DA + A
Sbjct: 361 GLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAA 420
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+++ V+L +L+E +PK+ YV+LSNI+ RW L+ AM + G
Sbjct: 421 LLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGF 480
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 481 KKLPGCSLIE 490
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 39/273 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M++A +F+ + + + W ++ G+ +N + I +F+ M G V PN T+ +L
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLD--VMPNCFTFPVIL 58
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC V L G++VH +++++ + F+ T LID+Y G + A RVF M+ +
Sbjct: 59 KSC---VKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIER 115
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V W AMI+ + A +FD E+ + + + +++ A+ V ELF
Sbjct: 116 NVIAWTAMINGYITCCDLVTARRLFDLAPERDI----VLWNTMISGYIEAKDVIRARELF 171
Query: 191 HSMLGK------------------------FEVVPIME--HYGCVVDLLGRAGLLSEAKE 224
M K FE +P + ++ R G SE
Sbjct: 172 DKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLS 231
Query: 225 FMRSMPFE----PDASVLGALLGACKIHGAVDL 253
+ M + P+ + L +L AC GA+DL
Sbjct: 232 AFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 26/255 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y G + +A +F M++R+V++WT++ING++ C +L
Sbjct: 92 LIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYI-------TCCDLVTARRLFDLAP 144
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + S G + + +++ + N+ V+S +++ Y G +
Sbjct: 145 ERDIVLWNTMIS--GYIEAKDVIRARELFDK-MPNKDVMS---WNTVLNGYASNGDVMAC 198
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F+ M ++V +WNA+I N E L F M G + N+ T V VL+ACAR
Sbjct: 199 ERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACAR 258
Query: 180 AQLVELGLELF-----HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
++LG + H G V ++D+ + G++ A + +SM D
Sbjct: 259 LGALDLGKWVHVYAESHGYKGNVYV------RNALMDMYAKCGVVETALDVFKSMD-NKD 311
Query: 235 ASVLGALLGACKIHG 249
++G +HG
Sbjct: 312 LISWNTIIGGLAVHG 326
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 200/311 (64%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK G+++ A LF++M +D VSW+++I+G+ + F E + +F+ M + +
Sbjct: 361 MISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEM--QIEGTK 418
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E VSV+S+C L L GK +H YI +N + +++ +GT LI++Y K+GC+E A
Sbjct: 419 PDETILVSVISACTHL---AALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDA 475
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK + K V TWNA+I LA N ++L F EMKE G+ NEITFVAVL AC
Sbjct: 476 LEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHM 535
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM+ + ++ P ++HYGC+VDLLGRAG+L EA+E + SMP PD S GA
Sbjct: 536 GLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGA 595
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK +G + +GR+L+EL P H G V+LSNI+A W ++R M + G+
Sbjct: 596 LLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGV 655
Query: 301 RKIPAYSLIEA 311
K P S+IEA
Sbjct: 656 VKTPGCSMIEA 666
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 149/320 (46%), Gaps = 71/320 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + K G+++ A LF M ++D+VSW+++I+ + +N + EA+ +FK M N N +
Sbjct: 229 MIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEM--NANGIM 286
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
+E +SVLS+C+ L+ + GK VHG +++ I V + ALI +Y
Sbjct: 287 VDEVVVLSVLSACSRLL---VVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTA 343
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
K G +E+A +F SM KD +W+AMIS A R
Sbjct: 344 QKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFT 403
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK----------FEV 199
E LV+F EM+ +G + +E V+V++AC ++ G + H+ + K +
Sbjct: 404 ETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTL 462
Query: 200 VPIMEHYGCVVD-------------------LLGRA--GLLSEA-KEF--MRSMPFEPDA 235
+ + GCV D +LG A GL+ ++ K F M+ P+
Sbjct: 463 INMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNE 522
Query: 236 SVLGALLGACKIHGAVDLCH 255
A+LGAC+ G VD H
Sbjct: 523 ITFVAVLGACRHMGLVDEGH 542
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 45/196 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y G++ A +F+ D+VSW S++ G+V G EA V+ M
Sbjct: 167 LINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM-------- 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P RN V ++I L+GK G +E A
Sbjct: 219 PE-------------------------------RN-----VIASNSMIVLFGKKGNVEEA 242
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KD+ +W+A+IS N +EAL++F EM G+ +E+ ++VL+AC+R
Sbjct: 243 CKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRL 302
Query: 181 QLVELGLELFHSMLGK 196
+V G +L H ++ K
Sbjct: 303 LVVITG-KLVHGLVVK 317
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
+++ G+++ +AI V+K M+ + V + TY + SC+ + E + GK +
Sbjct: 95 NTMMKGYMQRNSPCKAIWVYKFMLESN--VAADNYTYPILFQSCSIRLAE---FDGKCIQ 149
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
++L+ V++ LI++Y G L A +VF + D+ +WN+M++ +
Sbjct: 150 DHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVE 209
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
EA ++D M E+ + A+ +++ + VE +LF+ M K
Sbjct: 210 EAKDVYDRMPERNVIASN----SMIVLFGKKGNVEEACKLFNEMKQK 252
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY K+G + A LF+ M +++ VSW+++I G+ + G F EA+ +F +M + R
Sbjct: 160 VINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDM--QIAGFR 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN V L++CA L G L G+ +H Y+ RN +VL +GTALID+Y K GC+E A
Sbjct: 218 PNHGAIVGALTACAFL---GALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M+ +DV + ++IS LA++ A+ MF M+ +G+ NE+TF+ +L+AC+R
Sbjct: 275 CRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRV 334
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL +F SM + + P+++HYGC+VDLLGRAG+L +AK +R MP EPD+ VLGA
Sbjct: 335 GLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGA 394
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG V+L E L E H G +V+LSN++A +W +RK M E +
Sbjct: 395 LLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKV 454
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 455 KKVPGCSLIE 464
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 38/273 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
GD+ A LLF ++ +R W +++ F + ++K M+ L PN T+
Sbjct: 35 QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL--PNNYTFS 92
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L +CA L + L G +H +R F+ L+ LY C++ A R+F
Sbjct: 93 FLLQACAQLSD---LSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGS 149
Query: 128 VIKDVCTW-------------------------------NAMISSLASNSREKEALVMFD 156
V +DV TW +AMI+ A +EAL +F+
Sbjct: 150 VNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFN 209
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
+M+ G R N V LTACA ++ G H+ + + +V ++D+ +
Sbjct: 210 DMQIAGFRPNHGAIVGALTACAFLGALDQG-RWIHAYVDRNRMVLDRILGTALIDMYAKC 268
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G + A M + D +L+ HG
Sbjct: 269 GCVETACRVFDEM-LDRDVFAFTSLISGLANHG 300
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 203/311 (65%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+D A LFE + ++D++SW +I G+ + EA+ +F+ M + V
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN--VE 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
PN+ T+VS+L +CA L G L LGK +H YI + + L+ + T+LID+Y K G +E
Sbjct: 363 PNDVTFVSILPACAYL---GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEA 419
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M K + +WNAMIS LA + AL +F +M+++G ++ITFV VL+AC+
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVELG + F SM+ +++ P ++HYGC++DLLGRAGL EA+ M++M +PD ++ G
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC++HG V+L + L EL+P++ G YV+LSNI+A RW+ +R + + G
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599
Query: 300 IRKIPAYSLIE 310
++K+P S IE
Sbjct: 600 MKKVPGCSSIE 610
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 154/285 (54%), Gaps = 9/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G +D A LFE + RD VSW ++I G+ ++G F EA+ F+ M N V
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK-RAN-VA 261
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+T V+VLS+CA G L LG V +I + + ++ + ALID+Y K G L++A
Sbjct: 262 PNESTMVTVLSACA---QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KD+ +WN MI + + KEAL +F +M++ + N++TFV++L ACA
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG + + KF + + ++D+ + G + AK+ M + S A
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNA 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ +HG ++ E+ R++ + +P VLS HAGL
Sbjct: 438 MISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 37/252 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A+LLFE++ + + W ++I G + AI + M+ + V PN T+
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML--LCGVEPNSYTFPF 137
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--------------- 113
+L SCA + G GKQ+HG++L+ + F+ T+LI++Y +
Sbjct: 138 LLKSCAKV---GATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 114 ----------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
GCL+ A R+F+ + ++D +WNAMI+ A + R +EAL F E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
MK + NE T V VL+ACA++ +ELG S + + + ++D+ + G
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 218 LLSEAKEFMRSM 229
L +A++ +
Sbjct: 314 DLDKARDLFEGI 325
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 197/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G MD A+ LF M +++ +SWT++I+G+V+ EA+ +F M + V
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD--VE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + + LS+CA L G L GK +H Y+ + I + +G LID+Y K G +E A
Sbjct: 245 PDNVSLANALSACAQL---GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK++ K V W A+IS A + +EA+ F EM++ G++ N ITF AVLTAC+
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F+SM + + P +EHYGC+VDLLGRAGLL EAK F++ MP +P+A + GA
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L E+G L+ + P H GRYV +NIHA ++W++A + R+ M E G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 301 RKIPAYSLI 309
K+P S I
Sbjct: 482 AKVPGCSTI 490
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 40/268 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++F+ + D W +I GF + ++ +++ M+ + N T+ S+L +C
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRML--CSSAPHNAYTFPSLLKAC 125
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------------- 112
+ L Q+H I + V+ +LI+ Y
Sbjct: 126 SNL---SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182
Query: 113 ----------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
K G ++ A+ +F+ M K+ +W MIS KEAL +F EM+
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD 242
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV-VDLLGRAGLLSE 221
+ + ++ L+ACA+ +E G + HS L K + + GCV +D+ + G + E
Sbjct: 243 VEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEE 300
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHG 249
A E +++ + AL+ HG
Sbjct: 301 ALEVFKNIK-KKSVQAWTALISGYAYHG 327
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 205/310 (66%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D++SA +F + ++DV+SWTS+++G ++G F E++ +F+ M ++ +
Sbjct: 52 ILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKM--QLHKIE 109
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V VLS+CA G L GK +H I + EI + + TAL+D+Y K G ++ A
Sbjct: 110 PDEITLVGVLSACA---QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLA 166
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +++V TWNAMI LA + ++A+ +FD+M+ L +++TF+A+L AC+ A
Sbjct: 167 LQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHA 226
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F +M KF++ P MEHYGCVVDLL RA + +A F+ +MP + ++ +
Sbjct: 227 GLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWAT 286
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ G DL ++ RR++EL+P CGRYV+LSN++AG+ +W+ A LRK M GI
Sbjct: 287 LLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 346
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 347 EKTPGCSWIE 356
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
M ++ +RP+E T VS++ +CA L G L GK +H Y + ++ + A++D+Y
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQL---GNLERGKLLHSYSKELGLDENLSVNNAILDMYC 57
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K +E A VF + KDV +W +M+S LA + +E+L +F +M+ + +EIT V
Sbjct: 58 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVG 117
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
VL+ACA+ ++ G + H ++ KFE+ + +VD+ + G + A + R M
Sbjct: 118 VLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 176
Query: 233 PDASVLGALLGACKIHG 249
+ A++G +HG
Sbjct: 177 -NVFTWNAMIGGLAMHG 192
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 191/302 (63%), Gaps = 5/302 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G D A LF M RDVVSW S++ + + G EA+ +F M V+P EAT VS
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVKPTEATVVS 219
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+LS+CA L G L G +H YI N I ++ +GTAL+D+Y K G + A +VF +M
Sbjct: 220 LLSACAHL---GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME 276
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KDV WN +I+ +A + KEA +F EMKE G+ N+ITFVA+L+AC+ A +V+ G +
Sbjct: 277 SKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQK 336
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
L M + + P +EHYGCV+DLL RAGLL EA E + +MP EP+ LGALLG C+IH
Sbjct: 337 LLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIH 396
Query: 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308
G +L VG+RL+ LQP H GRY++LSNI+A ++W+ A +R M GI K+P S+
Sbjct: 397 GNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 456
Query: 309 IE 310
IE
Sbjct: 457 IE 458
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F M +DV++W +II G +G EA +FK M V
Sbjct: 255 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEM--KEAGVE 312
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T+V++LS+C AG+V+EG L Y I V +IDL + G LE
Sbjct: 313 PNDITFVAMLSACSHAGMVDEGQKLLDCMSSSY----GIEPKVEHYGCVIDLLARAGLLE 368
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
A+ + +M ++ + C A++
Sbjct: 369 EAMELIGTMPMEPNPCALGALL 390
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 205/310 (66%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D++SA +F + ++DV+SWTS+++G ++G F EA+ +F+ M +N +
Sbjct: 254 ILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKM--QLNKIE 311
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T V VLS+CA G L GK +H I + EI + + TAL+D+Y K G ++ A
Sbjct: 312 LDEITLVGVLSACA---QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLA 368
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +++V TWNA+I LA + ++A+ +FD+M+ L +++TF+A+L AC+ A
Sbjct: 369 LQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHA 428
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F +M KF++ P MEHYGCVVDLL RA + +A F+ +MP + ++ +
Sbjct: 429 GLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWAT 488
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ G DL ++GRR++EL+P CGRYV+LSN++AG+ +W+ A LRK M GI
Sbjct: 489 LLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 548
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 549 EKTPGCSWIE 558
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 6/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G A +F+ RDVV+W +IN + G +A + M NL R
Sbjct: 152 LIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNL-R 210
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS++ +CA L G L GK +H Y + ++ + A++D+Y K +E A
Sbjct: 211 PDEVTMVSLVPACAQL---GNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESA 267
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV +W +M+S LA + +EAL +F +M+ + +EIT V VL+ACA+
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQT 327
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G + H ++ KFE+ + +VD+ + G + A + R M + A
Sbjct: 328 GALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNA 385
Query: 241 LLGACKIHG 249
L+G +HG
Sbjct: 386 LIGGLAMHG 394
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 7/218 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD++ A LF M D ++I G+ R+ EA+ ++ M+ V + TY
Sbjct: 58 SGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERG--VPVDNYTYP 115
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL++CA L G + LG++ H +L+N +F+ ALI Y G A VF
Sbjct: 116 FVLAACARL---GAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELG 186
++DV TWN MI++ + ++A + DEM K LR +E+T V+++ ACA+ +E G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ HS + + + ++D+ + + A+E
Sbjct: 233 -KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQE 269
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 201/312 (64%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K GD+DSA +FE+M RDVVSW+S+I+G V+ G +G A+ +F+ M V +
Sbjct: 29 MLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM--RVVGPK 86
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSVL +CA L G L G+ +H Y++ N + ++ + T+L+D+Y K G +E A
Sbjct: 87 ANEVTMVSVLCACAHL---GALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEA 143
Query: 121 IRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
I VF+ M DV WN +I LA++ E+L +F EM+ G+ +EIT++ + +ACA
Sbjct: 144 IAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACA 203
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV F S LGK +VP EHY C+VD+L RAG L+EA +F+ MP EP AS+L
Sbjct: 204 HGGLVHEAWHFFKS-LGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASML 262
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C H DL VGR+L+EL+P H GRY+ LSN++AG++ W+ A +R+AM
Sbjct: 263 GALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERR 322
Query: 299 GIRKIPAYSLIE 310
G++K P +S +E
Sbjct: 323 GVKKSPGFSFVE 334
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
A++D Y K G L+ A +VF+SM +DV +W++MI AL +F+ M+ G +
Sbjct: 27 NAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPK 86
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLGRAGLLSE 221
ANE+T V+VL ACA +E G + M+ +F +V ++D+ + G + E
Sbjct: 87 ANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVL----RTSLMDMYAKCGAIEE 142
Query: 222 AKEFMRSMPF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
A R +P + D + ++G HG L HE E+Q
Sbjct: 143 AIAVFRGVPMDQTDVLMWNTIIGGLATHG---LVHESLELFKEMQ 184
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 201/312 (64%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K GD+DSA +FE+M RDVVSW+S+I+G V+ G +G A+ +F+ M V +
Sbjct: 184 MLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM--RVVGPK 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSVL +CA L G L G+ +H Y++ N + ++ + T+L+D+Y K G +E A
Sbjct: 242 ANEVTMVSVLCACAHL---GALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEA 298
Query: 121 IRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
I VF+ M DV WN +I LA++ E+L +F EM+ G+ +EIT++ + +ACA
Sbjct: 299 IAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACA 358
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV F S LGK +VP EHY C+VD+L RAG L+EA +F+ MP EP AS+L
Sbjct: 359 HGGLVHEAWHFFKS-LGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASML 417
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C H DL VGR+L+EL+P H GRY+ LSN++AG++ W+ A +R+AM
Sbjct: 418 GALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERR 477
Query: 299 GIRKIPAYSLIE 310
G++K P +S +E
Sbjct: 478 GVKKSPGFSFVE 489
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 47/292 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+D + +F + + +W SII GF + ++ VF M+ V P+ TY
Sbjct: 60 GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFG--VCPDHLTYPF 117
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG---------------- 112
+ + A L L L VH I + + F+ +LI +YG
Sbjct: 118 IAKAVARLSE---LRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEML 174
Query: 113 ---------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
K G L+ A +VF+SM +DV +W++MI AL +F+
Sbjct: 175 IRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFER 234
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLG 214
M+ G +ANE+T V+VL ACA +E G + M+ +F +V ++D+
Sbjct: 235 MRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVL----RTSLMDMYA 290
Query: 215 RAGLLSEAKEFMRSMPF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
+ G + EA R +P + D + ++G HG L HE E+Q
Sbjct: 291 KCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHG---LVHESLELFKEMQ 339
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G K G ++ A LF M +++ +SW+++I+G+++ G + EA+ VF M +R
Sbjct: 233 MVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM--QREEIR 290
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SVL++CA L G L G+ +H Y+ N +GTAL+D+Y K G L+ A
Sbjct: 291 PRKFVLSSVLAACANL---GALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M K+V TWNAMI L + R ++A+ +F +M+++ R N IT + VL+ACA +
Sbjct: 348 WDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHS 407
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ GL +F+SM + + P MEHYGCVVDLLGRAGLL EA+E M SMP EP A+V GA
Sbjct: 408 GMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGA 467
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V+L VG+ LLEL+P++ GRY +LSNI+A RW+ ++RK M E G+
Sbjct: 468 LLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGV 527
Query: 301 RKIPAYSLIE 310
+ S+I+
Sbjct: 528 KTSTGISMID 537
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 17/246 (6%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
+++ A+ +FE + +V + II G ++N +AIC + MM + RPN+ TY ++
Sbjct: 79 NLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMM--IAHARPNKFTYPTL 136
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+C G QVH ++++ + V + +A I +YG G +E A R+
Sbjct: 137 FKACTAAEA---AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGN 193
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
DV +NAMI + A +F M++K N ++ +++ A+ ++E EL
Sbjct: 194 SDVICFNAMIDGYLKCGEVEAAKELFWSMEDK----NVGSWNVMVSGMAKCGMIEEAREL 249
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACK 246
F+ M K E+ + ++D + G EA E M E P VL ++L AC
Sbjct: 250 FNEMKEKNEI-----SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304
Query: 247 IHGAVD 252
GA+D
Sbjct: 305 NLGALD 310
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+ +A LF++ML+RDV+SW +I G+ + EA+ +F+ M+ + V
Sbjct: 302 LIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG--VE 359
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P E T++S+L SCA L G + LGK +H YI +N +S + T+LIDLY K G + A
Sbjct: 360 PTEITFLSILPSCAHL---GAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAA 416
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M IK + +WNAMI LA + + +A +F +M G+ NEITFV +L+AC A
Sbjct: 417 RQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHA 476
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+LG + F SM+ +++ P +HYGC++DLLGRAGL EA+ +++M +PD ++ G+
Sbjct: 477 GLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGS 536
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V+L V RL EL+P + G YV+LSNI+AG +W+ +R + + G+
Sbjct: 537 LLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGM 596
Query: 301 RKIPAYSLIE 310
+K+P + IE
Sbjct: 597 KKVPGCTTIE 606
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 146/285 (51%), Gaps = 10/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G MD A LF+ M +DVVSW ++I G+ + G EA+ +F++M N V
Sbjct: 201 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR-KAN-VP 258
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+T VSVLS+CA L LG + +I + ++ + ALID+Y K G L+ A
Sbjct: 259 PNESTIVSVLSACA---QSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTA 315
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M+ +DV +WN MI KEAL +F EM G+ EITF+++L +CA
Sbjct: 316 RELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHL 375
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG + H+ + K ++DL + G + A++ M + AS A
Sbjct: 376 GAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNA 433
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ +HG D E+ ++ ++P +LS HAGL
Sbjct: 434 MICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGL 478
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 37/254 (14%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++GD+ AI LF ++ + ++ W S+I G + A+ F M+ + V PN T+
Sbjct: 75 RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMI--YSGVEPNSYTF 132
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG----------- 115
+L SCA L + + GKQ+H ++L+ V VF+ T+LI++Y + G
Sbjct: 133 PFLLKSCAKLASA---HEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189
Query: 116 --------------------CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
++RA ++F M +KDV +WNAMI+ A R KEAL++F
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
++M++ + NE T V+VL+ACA++ ++LG + S + + ++ ++D+ +
Sbjct: 250 EDMRKANVPPNESTIVSVLSACAQSNALDLGNSM-RSWIEDRGLCSNLKLVNALIDMYSK 308
Query: 216 AGLLSEAKEFMRSM 229
G L A+E M
Sbjct: 309 CGDLQTARELFDDM 322
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 8/183 (4%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYG--KVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+H +I++ + ++F + LI+ + G + AI +F S+ ++ WN+MI L+
Sbjct: 46 KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
+ ALV F M G+ N TF +L +CA+ G ++ H+ + K V +
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI-HAHVLKLGFVSDV 164
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ ++++ ++G ++ A+ F DA AL+ + G +D R+L +
Sbjct: 165 FIHTSLINMYAQSGEMNNAQLVFDQSNFR-DAISFTALIAGYALWGYMDR----ARQLFD 219
Query: 264 LQP 266
P
Sbjct: 220 EMP 222
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+D+A LFE M +R+V+SWT++I G+ + EAI +F+ M + V
Sbjct: 211 MVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM--QLEEVE 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E ++ LS+CA L G L LG+ +H YI ++ + V + ALID+Y K G +E+A
Sbjct: 269 PDEIAMLAALSACAHL---GALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKA 325
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK+M K V TW +MI LA + +EAL MF M+ ++ NEITFVA+L+AC
Sbjct: 326 LEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHV 385
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE+G F M K+ + P ++HYGC++DLLGRAG L EA+E +R MPFE +A + G+
Sbjct: 386 GLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGS 445
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IHG +L + + L++++P + G Y +LSNI+A +WN A +RK M + G+
Sbjct: 446 LLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGV 505
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 506 KKMPGGSCIE 515
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 122/279 (43%), Gaps = 45/279 (16%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + + D+ + +II EAI ++ ++ + +R + + VL + L
Sbjct: 95 IFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASD--LRFDTYSLPFVLKAVVRL 152
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ +++G+Q+H + +V + + TALI +Y GC+ A ++F + +DV WN
Sbjct: 153 L---AIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWN 209
Query: 137 AM-------------------------------ISSLASNSREKEALVMFDEMKEKGLRA 165
AM I+ A R EA+ MF M+ + +
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+EI +A L+ACA +ELG E H+ + K + I+ ++D+ + G + +A E
Sbjct: 270 DEIAMLAALSACAHLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEV 328
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++M + +++ +HG +GR LE+
Sbjct: 329 FKNMEHK-SVITWTSMIDGLALHG-------LGREALEM 359
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+D+A LFE M +R+V+SWT++I G+ + EAI +F+ M + V
Sbjct: 211 MVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM--QLEEVE 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E ++ LS+CA L G L LG+ +H YI ++ + V + ALID+Y K G +E+A
Sbjct: 269 PDEIAMLAALSACAHL---GALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKA 325
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK+M K V TW +MI LA + +EAL MF M+ ++ NEITFVA+L+AC
Sbjct: 326 LEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHV 385
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE+G F M K+ + P ++HYGC++DLLGRAG L EA+E +R MPFE +A + G+
Sbjct: 386 GLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGS 445
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IHG +L + + L++++P + G Y +LSNI+A +WN A +RK M + G+
Sbjct: 446 LLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGV 505
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 506 KKMPGGSCIE 515
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 122/279 (43%), Gaps = 45/279 (16%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + + D+ + +II EAI ++ ++ + +R + + VL + L
Sbjct: 95 IFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASD--LRFDTYSLPFVLKAVVRL 152
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ +++G+Q+H + +V + + TALI +Y GC+ A ++F + +DV WN
Sbjct: 153 L---AIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWN 209
Query: 137 AM-------------------------------ISSLASNSREKEALVMFDEMKEKGLRA 165
AM I+ A R EA+ MF M+ + +
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+EI +A L+ACA +ELG E H+ + K + I+ ++D+ + G + +A E
Sbjct: 270 DEIAMLAALSACAHLGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEV 328
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++M + +++ +HG +GR LE+
Sbjct: 329 FKNMEHK-SVITWTSMIDGLALHG-------LGREALEM 359
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 193/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K D+ SA +F+ + K+D++SW+S+I+G+ + F +A+ +F+ M V+
Sbjct: 260 MIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK--VK 317
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SV+SSCA L G L LGK VH Y+ RN I M +LID+Y K G + A
Sbjct: 318 PDAIVIASVVSSCAHL---GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEA 374
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VFK M KD +WN++I LA+N EKE+L +F M +G R N +TF+ VL ACA A
Sbjct: 375 LQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANA 434
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LVE GL+ F SM + + P M+HYGCVVDLLGRAG L +A F+ MP +PD V
Sbjct: 435 KLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRI 494
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C HG V + V ++L EL+P + G Y +LSN +A RW+ A ++R+ M + +
Sbjct: 495 LLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDV 554
Query: 301 RKIPAYSLIEA 311
RK P S +EA
Sbjct: 555 RKSPGCSAVEA 565
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ A +F+ + W +I G ++ +AI +K G + P+ T+ +
Sbjct: 36 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV--PDNLTFPFI 93
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L +CA + L G+Q+H +I + ++ +F+ +LI LY G L A VF MV+
Sbjct: 94 LKACARI---NALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVV 150
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV +WN++I + +R K+ L +F M+ +G++A+++T + V++AC R
Sbjct: 151 KDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTR---------- 200
Query: 190 FHSMLGKFEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSM 229
LG + + M Y +VD GR G L A++ +M
Sbjct: 201 ----LGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 249
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 45/263 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G++ A +F+ M+ +DVVSW S+I G+ + F + + +FK +M N V+
Sbjct: 128 LIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFK-LMQNEG-VK 185
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T + V+S+C L G + + YI I + V++G L+D +G+ G L+ A
Sbjct: 186 ADKVTMIKVVSACTRL---GDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSA 242
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M ++++ T NAMI++ A A +FD++ +K L I++ ++++ ++A
Sbjct: 243 EKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL----ISWSSMISGYSQA 298
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LE+F M+ +PDA V+ +
Sbjct: 299 NHFSDALEIFRQ---------------------------------MQRAKVKPDAIVIAS 325
Query: 241 LLGACKIHGAVDL---CHEVGRR 260
++ +C GA+DL HE RR
Sbjct: 326 VVSSCAHLGALDLGKWVHEYVRR 348
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/309 (42%), Positives = 195/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G MD A+ LF M++++ +SWT++I+G+V+ G EA+ +F M + V
Sbjct: 216 VIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSD--VE 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + + LS+CA L G L GK +H Y+ + I + +G LID+Y K G + A
Sbjct: 274 PDNVSLANALSACAQL---GALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEA 330
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK++ K V W A+IS A + +EA+ F EM++ G++ N ITF VLTAC+
Sbjct: 331 LEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYT 390
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F++M + + P +EHYGCVVDLL RAGLL EAK F++ MP +P+A + GA
Sbjct: 391 GLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGA 450
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L E+G L+ + P H GRYV +NIHA ++W++A + R+ M E G+
Sbjct: 451 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGV 510
Query: 301 RKIPAYSLI 309
K+P S I
Sbjct: 511 AKVPGCSTI 519
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 40/268 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++F+ + D W +I GF + ++ +++ M+ N T+ S+L +C
Sbjct: 97 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRML--CCSAPHNAYTFPSLLKAC 154
Query: 74 AGLVNEGGLYLGKQVHGYILR----NEI-----VLSVFMGT------------------- 105
+ L L Q+H I + N++ +++ + T
Sbjct: 155 SNL---SALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAV 211
Query: 106 ---ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
++I Y K G ++ A+ +F+ MV K+ +W MIS KEAL +F EM+
Sbjct: 212 SWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSD 271
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV-VDLLGRAGLLSE 221
+ + ++ L+ACA+ +E G + HS L K + + GCV +D+ + G + E
Sbjct: 272 VEPDNVSLANALSACAQLGALEQG-KWIHSYLTKTRIR-MDSVLGCVLIDMYAKCGDMGE 329
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHG 249
A E +++ AL+ HG
Sbjct: 330 ALEVFKNIQ-RKSVQAWTALISGYAYHG 356
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 204/312 (65%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K GD++ A +F M ++DVVSW+S+I+G+V+ +GEA+ +F+ M + +
Sbjct: 185 MLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMA- 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VS L +CA L G L G+ +H YI+ NE+ L++ + T+L+D+Y K G + A
Sbjct: 244 -NEVTLVSALCACAHL---GALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEA 299
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ VF++ ++ DV WNA+I LA++ KEA+ +F EMK G+ +EIT++ +L+ CA
Sbjct: 300 LTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCA 359
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE F L K ++P +EHY C+VD L RAG +SEA +F+ MP +P +S+L
Sbjct: 360 HGGLVEEAWYFF-DCLRKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSML 418
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C HG +D+ VGRRL+EL P H GRYV LSNI+A +RW+ A ++R+AM
Sbjct: 419 GALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERK 478
Query: 299 GIRKIPAYSLIE 310
G++K P +S IE
Sbjct: 479 GVKKSPGFSFIE 490
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 38/274 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D + L N+ +W ++I F +I VF M+ N V P+ TY +
Sbjct: 62 DLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNG--VSPDYLTYPFL 119
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI--------------------- 108
+ + + L+N+ LG VH +I+++ + F+ +LI
Sbjct: 120 VKATSKLLNQE---LGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPR 176
Query: 109 ----------DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
D Y K G L A VF M KDV +W+++I EA+ +F+ M
Sbjct: 177 KNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERM 236
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
G ANE+T V+ L ACA +E G + H + + E+ + +VD+ + G
Sbjct: 237 SFDGPMANEVTLVSALCACAHLGALEHG-RMMHRYIVENELPLTIVLQTSLVDMYAKCGA 295
Query: 219 LSEAKEFMRSMPF-EPDASVLGALLGACKIHGAV 251
+ EA R+ E D + A++G HG +
Sbjct: 296 IHEALTVFRACSLQEADVLIWNAIIGGLATHGLI 329
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 193/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K D+ SA +F+ + K+D++SW+S+I+G+ + F +A+ +F+ M V+
Sbjct: 725 MIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK--VK 782
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SV+SSCA L G L LGK VH Y+ RN I M +LID+Y K G + A
Sbjct: 783 PDAIVIASVVSSCAHL---GALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEA 839
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VFK M KD +WN++I LA+N EKE+L +F M +G R N +TF+ VL ACA A
Sbjct: 840 LQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANA 899
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LVE GL+ F SM + + P M+HYGCVVDLLGRAG L +A F+ MP +PD V
Sbjct: 900 KLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRI 959
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C HG V + V ++L EL+P + G Y +LSN +A RW+ A ++R+ M + +
Sbjct: 960 LLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDV 1019
Query: 301 RKIPAYSLIEA 311
RK P S +EA
Sbjct: 1020 RKSPGCSAVEA 1030
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 185/294 (62%), Gaps = 6/294 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+ G+++ A LLFE M R+VVSW+ +I+G+ R EA+ +F+ MM +
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEG--IS 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E ++VL+ L N G + +G+ +HGY + +V V +G +LIDLY K+G ++ +
Sbjct: 219 PSE---ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNS 275
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+RVF M+ + ++ +W ++IS A + +A+ +F +M+ G+R N ITF++VL AC+
Sbjct: 276 LRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSH 335
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G+ F SM+ ++ + P ++H+GC++D+LGRAG L EA++ +R P E +A+V
Sbjct: 336 GGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWR 395
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
LLG C +G V++ +++L L+ + G +VVLSN+ L R++ A +RK
Sbjct: 396 TLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRK 449
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ A +F+ + W +I G ++ +AI +K G + P+ T+ +
Sbjct: 501 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV--PDNLTFPFI 558
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L +CA + L G+Q+H +I + ++ +F+ +LI LY G L A VF MV+
Sbjct: 559 LKACARI---NALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVV 615
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV +WN++I + +R K+ L +F M+ +G++A+++T + V++AC R
Sbjct: 616 KDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTR---------- 665
Query: 190 FHSMLGKFEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSM 229
LG + + M Y +VD GR G L A++ +M
Sbjct: 666 ----LGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNM 714
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 45/263 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G++ A +F+ M+ +DVVSW S+I G+ + F + + +FK +M N V+
Sbjct: 593 LIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFK-LMQNEG-VK 650
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T + V+S+C L G + + YI I + V++G L+D +G+ G L+ A
Sbjct: 651 ADKVTMIKVVSACTRL---GDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSA 707
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M ++++ T NAMI++ A A +FD++ +K L I++ ++++ ++A
Sbjct: 708 EKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL----ISWSSMISGYSQA 763
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LE+F M+ +PDA V+ +
Sbjct: 764 NHFSDALEIFRQ---------------------------------MQRAKVKPDAIVIAS 790
Query: 241 LLGACKIHGAVDL---CHEVGRR 260
++ +C GA+DL HE RR
Sbjct: 791 VVSSCAHLGALDLGKWVHEYVRR 813
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 120/300 (40%), Gaps = 47/300 (15%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
L+ + R W +++ + +A+ +F++ + + + L +CAG
Sbjct: 45 LIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARWHAA---DDTYAFTFALKACAG 101
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
L G Q+HG ++R ++ TAL+++Y GCL + F+ M +K+ +W
Sbjct: 102 L---GWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSW 158
Query: 136 NAMISSLAS-------------------------------NSREKEALVMFDEMKEKGLR 164
N +I+ A R EA+ +F M +G+
Sbjct: 159 NVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGIS 218
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+EIT +AV+ A + + +G E H K +V + ++DL + G + +
Sbjct: 219 PSEITVLAVVPALSNVGKILIG-EALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLR 277
Query: 225 FMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280
M + +++ +HG AV+L ++ R ++P R LS +HA
Sbjct: 278 VFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRR--AGIRP---NRITFLSVLHA 332
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 196/311 (63%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLV 59
+ID Y K G +D+A LF+ M KRDVV+W+++I+G+ + EA+ +F M GNV
Sbjct: 263 LIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV--- 319
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T VSVL SCA L G GK VH YI + ++ L+V +GT LID Y K G ++R
Sbjct: 320 YPNEVTMVSVLYSCAML---GAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDR 376
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ VFK M K+V TW A+I LA+N K AL F M E ++ N++TF+ VL+AC+
Sbjct: 377 SVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G LF+SM F++ P +EHYGC+VD+LGRAG L EA +F+ +MPF P+A V
Sbjct: 437 ACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWR 496
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL +C+ H +++ + + L+P H G Y++LSN +A + R A +R + E
Sbjct: 497 TLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKE 556
Query: 300 IRKIPAYSLIE 310
I+KIP SLIE
Sbjct: 557 IKKIPGCSLIE 567
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 6/232 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +F+ M +R +V+W S+++G+ +NG + E + +F+ ++ +
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILEL--RIE 219
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T +SVL +C L N L +G+ + YI+ + + + T+LID+Y K G ++ A
Sbjct: 220 FDDVTMISVLMACGRLAN---LEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +DV W+AMIS A R KEAL +F EM++ + NE+T V+VL +CA
Sbjct: 277 RKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAML 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
E G + H + K ++ + ++D + G + + E + M F+
Sbjct: 337 GAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFK 387
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 120/259 (46%), Gaps = 18/259 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ +F ++ K + ++ +I G A+ +FK M + V+ ++ T+ SVL
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM--HEKSVQHDKFTFSSVL 128
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C+ + L G+QVH IL++ + F+ LI +Y G + A VF M +
Sbjct: 129 KACSRM---KALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPER 185
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+ WN+M+S N E + +F ++ E + +++T ++VL AC R +E+G
Sbjct: 186 SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG---- 241
Query: 191 HSMLGKFEVVPIMEHYGC----VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
++G++ V + ++D+ + G + A++ M + D A++
Sbjct: 242 -ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISG-- 297
Query: 247 IHGAVDLCHEVGRRLLELQ 265
+ D C E E+Q
Sbjct: 298 -YAQADRCKEALNLFHEMQ 315
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ +N DM A+ LF M +RDVVSWT++I G+ +NG E++ VF M ++
Sbjct: 82 MITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQM--RKTGMK 139
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ SVLS+CA L L LG+Q H Y++++ L + +G+AL+D+Y K G +E A
Sbjct: 140 SDRFIMGSVLSACADL---AALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDA 196
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++ +WN++I+ A + R +A+++F++M + G++ NEI+FV VL+AC+
Sbjct: 197 CQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHT 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F+ M + +VP + HY C++DLLGRAG L EA+ F+ MP EPD SV GA
Sbjct: 257 GLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGA 316
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG +L + LL ++ + G YV+LSNI+A +W+ A +RK M + G+
Sbjct: 317 LLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGV 376
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 377 MKQPGYSWIE 386
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+PN+ T +V+ +CA + + L GKQ H YI++ V + TAL+ +Y + G LE
Sbjct: 6 VKPNQFTLSTVVKACASIAS---LEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLE 62
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK----------------- 161
A VF M + TWNAMI+ A N K+AL +F EM E+
Sbjct: 63 DAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122
Query: 162 --------------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
G++++ +VL+ACA +ELG + FH+ + + +
Sbjct: 123 GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGS 181
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+VD+ ++G + +A + MP + S +++ C HG
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHG 222
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 204/312 (65%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K G +D A LF+ M +RDV SW+ +I+G+ ++G +G+A+ VF+ M + +
Sbjct: 82 MVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKM--RTSGPK 139
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSVL +CA L G L G+ +H Y++ N L++ + T+LID+Y K G +E A
Sbjct: 140 ANEVTMVSVLCACAHL---GALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEA 196
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF+ + ++ DV WNAMI LA++ KE+L ++ EM+ G++ +EITF+ +L+ACA
Sbjct: 197 FAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACA 256
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ +F LGK + P EHY C+VD++ RAG ++EA +F+ MP EP AS+L
Sbjct: 257 HGGLVKQASYVFEG-LGKNGMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASML 315
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C HG +DL +G++L+EL P+H GRYV LSN++A RW+ A +R+AM
Sbjct: 316 GALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRRWDEARIMREAMERR 375
Query: 299 GIRKIPAYSLIE 310
G++K P YS +E
Sbjct: 376 GVKKTPGYSFLE 387
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+ TY + + + L+ + LG +HG+++++ + F+ +LI +YG G +
Sbjct: 6 IYPDHLTYPFLAKATSRLLRK---ELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIV 62
Query: 119 RAIRVFKSMVIKDVCTWNAM-------------------------------ISSLASNSR 147
A +VF +K++ +WN+M I A +
Sbjct: 63 YARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGN 122
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVPIMEH 205
+A+ +F++M+ G +ANE+T V+VL ACA ++ G + H L FE+ ++
Sbjct: 123 YGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKG-RMMHQYLVDNGFELNLVLR- 180
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPF-EPDASVLGALLGACKIHGAV 251
++D+ + G + EA R + + D + A++G HG V
Sbjct: 181 -TSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLV 226
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 198/303 (65%), Gaps = 6/303 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+D A LFE + ++D++SW +I G+ + EA+ +F+ M + V
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN--VE 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
PN+ T+VS+L +CA L G L LGK +H YI + + L+ + T+LID+Y K G +E
Sbjct: 363 PNDVTFVSILPACAYL---GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEA 419
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M K + +WNAMIS LA + AL +F +M+++G ++ITFV VL+AC+
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVELG + F SM+ +++ P ++HYGC++DLLGRAGL EA+ M++M +PD ++ G
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC++HG V+L + L EL+P++ G YV+LSNI+A RW+ +R + + G
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKG 599
Query: 300 IRK 302
++K
Sbjct: 600 MKK 602
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 154/285 (54%), Gaps = 9/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G +D A LFE + RD VSW ++I G+ ++G F EA+ F+ M N V
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK-RAN-VA 261
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+T V+VLS+CA G L LG V +I + + ++ + ALID+Y K G L++A
Sbjct: 262 PNESTMVTVLSACA---QSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KD+ +WN MI + + KEAL +F +M++ + N++TFV++L ACA
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG + + KF + + ++D+ + G + AK+ M + S A
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNA 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ +HG ++ E+ R++ + +P VLS HAGL
Sbjct: 438 MISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 37/252 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A+LLFE++ + + W ++I G + AI + M+ + V PN T+
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML--LCGVEPNSYTFPF 137
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--------------- 113
+L SCA + G GKQ+HG++L+ + F+ T+LI++Y +
Sbjct: 138 LLKSCAKV---GATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194
Query: 114 ----------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
GCL+ A R+F+ + ++D +WNAMI+ A + R +EAL F E
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
MK + NE T V VL+ACA++ +ELG S + + + ++D+ + G
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313
Query: 218 LLSEAKEFMRSM 229
L +A++ +
Sbjct: 314 DLDKARDLFEGI 325
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 201/318 (63%), Gaps = 12/318 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------- 53
++ GY NG+++S + LFE M R+V SW +I G+VRNG F EA+ FK M+
Sbjct: 256 VLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEG 315
Query: 54 --GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
G+ +V PN+ T V+VL++C+ L G L +GK VH Y ++F+G ALID+Y
Sbjct: 316 KEGSDGVVVPNDYTVVAVLTACSRL---GDLEMGKWVHVYAESIGYKGNLFVGNALIDMY 372
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
K G +E+A+ VF + +KD+ TWN +I+ LA + +AL +F+ MK G R + +TFV
Sbjct: 373 AKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFV 432
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
+L+AC LV GL F SM+ + +VP +EHYGC+VDLLGRAGL+ +A + +R MP
Sbjct: 433 GILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPM 492
Query: 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291
EPDA + ALLGAC+++ V++ +RL+EL+P + G +V++SNI+ L R L
Sbjct: 493 EPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARL 552
Query: 292 RKAMVEAGIRKIPAYSLI 309
+ AM + G RK+P S+I
Sbjct: 553 KVAMRDTGFRKVPGCSVI 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L R E ++S+L +C V Q+ I+ + + + ++ + I ++G +
Sbjct: 17 LHRVVEDKFISLLRTCGTCVRL------HQIQAQIVTHGLEGNDYVTPSFITACARLGGI 70
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF + TWNAM A + + +V+F M G N TF V+ +C
Sbjct: 71 RRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSC 130
Query: 178 ARAQLVELGLELFHSMLGK 196
A A + G E+ H ++ K
Sbjct: 131 ATANAAKEGEEV-HCVVAK 148
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 53/257 (20%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A +F+ + + +W ++ G+ + C + + +F M + PN T+
Sbjct: 68 GGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARM--HRAGASPNCFTFPM 125
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY----------------- 111
V+ SCA G++VH + + + F+G ALI +Y
Sbjct: 126 VVKSCA---TANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAE 182
Query: 112 --------------GKVGCLE--RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
V C + A R+F +DV WN ++S A +F
Sbjct: 183 MRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELF 242
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG- 214
D M ++ + +++ VL+ A VE ++LF M P+ Y L+G
Sbjct: 243 DRMPDRDV----MSWNTVLSGYATNGEVESFVKLFEEM-------PVRNVYSW-NGLIGG 290
Query: 215 --RAGLLSEAKEFMRSM 229
R GL EA E + M
Sbjct: 291 YVRNGLFKEALECFKRM 307
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G +SA LFE M +R++V+W S+ING+ NG EA+ +F+ M + V
Sbjct: 181 LVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREM--GLRGVE 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+LS+CA L G L LG++ H Y+++ + ++ G AL+DLY K G + +A
Sbjct: 239 PDGFTMVSLLSACAEL---GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M K V +W ++I LA N KEAL +F E++ KGL +EITFV VL AC+
Sbjct: 296 HKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHC 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G + F M ++ +VP +EHYGC+VDLLGRAGL+ +A EF+++MP +P+A V
Sbjct: 356 GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRT 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG + L +LL+L+PKH G YV+LSN++A +RW+ +R+ M+ G+
Sbjct: 416 LLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGV 475
Query: 301 RKIPAYSLIE 310
+K P +SL+E
Sbjct: 476 KKTPGHSLVE 485
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A +F + ++ +W ++I G+ + A+ +++ M +V+ + P+ TY +L
Sbjct: 90 MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQM--HVSCIEPDTHTYPFLL 147
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ A L++ + G++VH +RN VF+ L+ +Y G E A ++F+ M +
Sbjct: 148 KAIAKLMD---VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAER 204
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
++ TWN++I+ A N R EAL +F EM +G+ + T V++L+ACA + LG
Sbjct: 205 NLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA- 263
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
H + K + + ++DL + G + +A + M
Sbjct: 264 HVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 302
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG++++ LFE M +R++ SW ++I G+ NG F E + FK M+ + V
Sbjct: 333 VLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD-VP 391
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y + + +V++G AL+D+Y K G +E A
Sbjct: 392 PNDATLVTVLSACARL---GALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 448
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M KD+ +WN +I LA +SR +AL +F +MK G + + ITF+ +L AC
Sbjct: 449 ISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHM 508
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + ++P +EHYGC+VD+L RAG L +A F+R MP E D +
Sbjct: 509 GLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAG 568
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ V+L +RL+EL+PK+ YV+LSNI+ RW L+ AM + G
Sbjct: 569 LLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF 628
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 629 KKLPGCSLIE 638
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ + ++ W S+ G+ ++ + E + +F M G +RPN T+ VL
Sbjct: 149 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD--IRPNCFTFPVVL 206
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC G +N L G+QVH ++++ + F+GT LID+Y G + A ++F M +
Sbjct: 207 KSC-GKIN--ALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFER 263
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+V W +MI+ ++ A +FD E+
Sbjct: 264 NVVAWTSMINGYILSADLVSARRLFDLAPER 294
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y G + A +F M +R+VV+WTS+ING++ + A +F +L
Sbjct: 240 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF-------DLAP 292
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++ S G + G + +++ + ++ +F T L Y G +E
Sbjct: 293 ERDVVLWNIMVS--GYIEGGDMVEARKLFXEMPNRDV---MFWNTVLKG-YATNGNVEAL 346
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
+F+ M +++ +WNA+I A N E L F M E + N+ T V VL+ACAR
Sbjct: 347 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 406
Query: 180 AQLVELG 186
++LG
Sbjct: 407 LGALDLG 413
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+ I+ N + ++ L+ + + + A ++F + ++ WN+M A +
Sbjct: 119 QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSE 178
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIME 204
+E + +F +MK +R N TF VL +C + + G E H L K F P +
Sbjct: 179 SYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG-EQVHCFLIKCGFRGNPFVG 237
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++D+ G + +A + M FE + +++ + + DL RRL +L
Sbjct: 238 T--TLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYIL--SADLVS--ARRLFDL 290
Query: 265 QPKHCGRYVVLSNI 278
P+ R VVL NI
Sbjct: 291 APE---RDVVLWNI 301
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG++++ LFE M +R++ SW ++I G+ NG F E + FK M+ + V
Sbjct: 270 VLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD-VP 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y + + +V++G AL+D+Y K G +E A
Sbjct: 329 PNDATLVTVLSACARL---GALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M KD+ +WN +I LA +SR +AL +F +MK G + + ITF+ +L AC
Sbjct: 386 ISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHM 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + ++P +EHYGC+VD+L RAG L +A F+R MP E D +
Sbjct: 446 GLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAG 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ V+L +RL+EL+PK+ YV+LSNI+ RW L+ AM + G
Sbjct: 506 LLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF 565
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 566 KKLPGCSLIE 575
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 39/273 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ + ++ W S+ G+ ++ + E + +F M G +RPN T+ VL
Sbjct: 86 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD--IRPNCFTFPVVL 143
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC G +N L G+QVH ++++ + F+GT LID+Y G + A ++F M +
Sbjct: 144 KSC-GKIN--ALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFER 200
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V W +MI+ ++ A +FD E+ + I + +VE +LF
Sbjct: 201 NVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG---GDMVE-ARKLF 256
Query: 191 HSML------------------------GKFEVVPIME--HYGCVVDLLGRAGLLSEA-- 222
H M G FE +P + ++ GL E
Sbjct: 257 HEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLG 316
Query: 223 --KEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
K + P+ + L +L AC GA+DL
Sbjct: 317 SFKRMLSESDVPPNDATLVTVLSACARLGALDL 349
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y G + A +F M +R+VV+WTS+ING++ + A +F +L
Sbjct: 177 LIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF-------DLAP 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++ S G + G + +++ + ++ +F T L Y G +E
Sbjct: 230 ERDVVLWNIMVS--GYIEGGDMVEARKLFHEMPNRDV---MFWNTVLKG-YATNGNVEAL 283
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
+F+ M +++ +WNA+I A N E L F M E + N+ T V VL+ACAR
Sbjct: 284 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 343
Query: 180 AQLVELG 186
++LG
Sbjct: 344 LGALDLG 350
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVH---GYILRNEIVLSVFMGTALIDLYGKVGCLER 119
E ++S+L SC KQVH I+ N + ++ L+ + + +
Sbjct: 38 EERFISLLQSCK---------TSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY 88
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + ++ WN+M A + +E + +F +MK +R N TF VL +C +
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 180 AQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G E H L K F P + ++D+ G + +A + M FE +
Sbjct: 149 INALIEG-EQVHCFLIKCGFRGNPFVGT--TLIDMYSAGGTVGDAYKIFCEM-FERNVVA 204
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
+++ + + DL RRL +L P+ R VVL NI
Sbjct: 205 WTSMINGYIL--SADLVS--ARRLFDLAPE---RDVVLWNI 238
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 195/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G+++ A +F +M +R+++SWTS+I+G V G EA+ +F M ++
Sbjct: 190 MIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM--QTAGIK 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ VS L +CA L G L GK +H YI ++EI + +G LID+Y K G LE A
Sbjct: 248 LDNVALVSTLQACADL---GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M K V W AMIS A + R +EAL F +M+ G+ N++TF +LTAC+ A
Sbjct: 305 IEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 364
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV LF SM P +EHYGC+VDLLGRAGLL EA+E + +MP +P+A++ GA
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC IHG ++L ++G+ L+++ P H GRY+ L++IHA WN+A +R+ M E G+
Sbjct: 425 LLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484
Query: 301 RKIPAYSLI 309
K+P S+I
Sbjct: 485 SKLPGCSVI 493
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 132/276 (47%), Gaps = 44/276 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A +F+ + + + W ++I G+ + EA+ ++ +M+ + V N T+
Sbjct: 65 SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML--YHSVPHNAYTFP 122
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILR----NEI-----VLSVFMGT------------- 105
+L +C+ + +Q+H +I++ +EI +L+V+ +
Sbjct: 123 FLLKACSSM---SASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179
Query: 106 ---------ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
++ID Y K G +E A +F M +++ +W +MIS + KEAL +F
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV--PIMEHYGCV-VDLL 213
M+ G++ + + V+ L ACA +++ G + H+ + K E+ PI+ GCV +D+
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPIL---GCVLIDMY 295
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G L EA E R M E SV A++ IHG
Sbjct: 296 AKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG 330
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 195/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G+++ A +F +M +R+++SWTS+I+G V G EA+ +F M ++
Sbjct: 190 MIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM--QTAGIK 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ VS L +CA L G L GK +H YI ++EI + +G LID+Y K G LE A
Sbjct: 248 LDNVALVSTLQACADL---GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M K V W AMIS A + R +EAL F +M+ G+ N++TF +LTAC+ A
Sbjct: 305 IEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 364
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV LF SM P +EHYGC+VDLLGRAGLL EA+E + +MP +P+A++ GA
Sbjct: 365 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 424
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC IHG ++L ++G+ L+++ P H GRY+ L++IHA WN+A +R+ M E G+
Sbjct: 425 LLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484
Query: 301 RKIPAYSLI 309
K+P S+I
Sbjct: 485 SKLPGCSVI 493
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 44/276 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A +F+ + + + W ++I G+ + EA+ ++ +M+ + V N T+
Sbjct: 65 SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML--YHSVPHNAYTFP 122
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILR----NEI-----VLSVFMGT------------- 105
+L +C+ + L +Q+H +I++ +EI +L+V+ +
Sbjct: 123 FLLKACSSM---SALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179
Query: 106 ---------ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
++ID Y K G +E A +F M +++ +W +MIS + KEAL +F
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV--PIMEHYGCV-VDLL 213
M+ G++ + + V+ L ACA +++ G + H+ + K E+ PI+ GCV +D+
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPIL---GCVLIDMY 295
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G L EA E R M E SV A++ IHG
Sbjct: 296 AKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHG 330
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 199/312 (63%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K GD+DSA +F +M RDVVSW+S+I+G V+ G +G A+ +F+ M V +
Sbjct: 177 MLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM--RVVGPK 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T VSVL +CA L G L G+ +H Y++ N + ++ + T+L+D+Y K G +E A
Sbjct: 235 ANXVTMVSVLCACAHL---GALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEA 291
Query: 121 IRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
I VF+ M DV WN +I LA++ E+L +F EM+ G+ +EIT++ + +ACA
Sbjct: 292 IAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACA 351
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV F S LGK +VP EHY C+VD+L RAG L+EA +F+ MP EP AS+L
Sbjct: 352 HGGLVHEAWHFFKS-LGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASML 410
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C H DL VGR+L+EL+P H GRY+ LSN++AG++ W+ A +R+AM
Sbjct: 411 GALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERR 470
Query: 299 GIRKIPAYSLIE 310
G++K P +S +E
Sbjct: 471 GVKKSPGFSFVE 482
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 44/278 (15%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+D + +F + + +W SII GF + ++ VF M+ V P+ TY
Sbjct: 53 GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFG--VCPDHLTYPF 110
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG---------------- 112
V + A L L L VH I + + F+ +LI +YG
Sbjct: 111 VAKAVARLSE---LRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEML 167
Query: 113 ---------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
K G L+ A +VF SM +DV +W++MI AL +F+
Sbjct: 168 IRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFER 227
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLG 214
M+ G +AN +T V+VL ACA +E G + M+ +F +V ++D+
Sbjct: 228 MRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVL----RTSLMDMYA 283
Query: 215 RAGLLSEAKEFMRSMPF-EPDASVLGALLGACKIHGAV 251
+ G + EA R +P + D + ++G HG V
Sbjct: 284 KCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLV 321
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG++++ LFE M +R++ SW ++I G+ NG F E + FK M+ + V
Sbjct: 112 VLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD-VP 170
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT V+VLS+CA L G L LGK VH Y + + +V++G AL+D+Y K G +E A
Sbjct: 171 PNDATLVTVLSACARL---GALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENA 227
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M KD+ +WN +I LA +SR +AL +F +MK G + + ITF+ +L AC
Sbjct: 228 ISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHM 287
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + ++P +EHYGC+VD+L RAG L +A F+R MP E D +
Sbjct: 288 GLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAG 347
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ V+L +RL+EL+PK+ YV+LSNI+ RW L+ AM + G
Sbjct: 348 LLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGF 407
Query: 301 RKIPAYSLIE 310
+K+P SLIE
Sbjct: 408 KKLPGCSLIE 417
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 48/208 (23%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ + ++ W S+ G+ ++ + E C + N + S++
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREIFC---------EMFERNVVAWTSMI 51
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ G + L +++ ++VL M + I+ G + A ++F M +
Sbjct: 52 N---GYILSADLVSARRLFDLAPERDVVLWNIMVSGYIE----GGDMVEARKLFHEMPNR 104
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA------------------------- 165
DV WN ++ A+N + +F+EM E+ + +
Sbjct: 105 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 164
Query: 166 -------NEITFVAVLTACARAQLVELG 186
N+ T V VL+ACAR ++LG
Sbjct: 165 SESDVPPNDATLVTVLSACARLGALDLG 192
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV G ++ A +F ++VVSW ++I G+ G F E + +F++M V+
Sbjct: 211 MISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG--VK 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+CA + G L G+ VH YI +N I + F+ TAL+D+Y K G +E+A
Sbjct: 269 PDNCTLVSVLSACAHV---GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKA 325
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF S + KD+ TWN++IS L+++ + AL +F EM +G + NE+TFV VL+AC+RA
Sbjct: 326 LEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRA 385
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G E+F+ M+ + P +EHYGC+VDLLGR GLL EA+E ++ MP + + V +
Sbjct: 386 GLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWES 445
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V+L V ++LLEL P+ +V LSN++A + RW ++R+ M G+
Sbjct: 446 LLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGV 505
Query: 301 RKIPAYSLIE 310
RK P S+IE
Sbjct: 506 RKDPGCSMIE 515
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 17/239 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + + W +II + + A+ +F M+ V P++ T+ L SC
Sbjct: 64 IFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS--VLPDKYTFTFALKSCGSF 121
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G+ G+Q+HG++L+ + +F+ LI LY GC+E A + M+ +DV +WN
Sbjct: 122 ---SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWN 178
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
A++S+ A + A +FDEM E+ + ++ +++ L+E +F G+
Sbjct: 179 ALLSAYAERGLMELACHLFDEMTERNVE----SWNFMISGYVGVGLLEEARRVF----GE 230
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRSMPFEPDASVLGALLGACKIHGAVD 252
V ++ + ++ AG SE E M+ +PD L ++L AC GA+
Sbjct: 231 TPVKNVVS-WNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALS 288
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 46/250 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G ++ A L + ML+RDVVSW ++++ + G E C + M N+
Sbjct: 149 LIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLM-ELACHLFDEMTERNVES 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N FM I Y VG LE A
Sbjct: 208 WN---------------------------------------FM----ISGYVGVGLLEEA 224
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +K+V +WNAMI+ + R E LV+F++M+ G++ + T V+VL+ACA
Sbjct: 225 RRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHV 284
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E H+ + K + +VD+ + G + +A E S D S +
Sbjct: 285 GALSQG-EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC-LRKDISTWNS 342
Query: 241 LLGACKIHGA 250
++ HG+
Sbjct: 343 IISGLSTHGS 352
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A +F+ M R+VV+WT++I G+V++ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ GT LIDLY K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ ++A +F M + NE+TF+AVL+ACA
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM G+F + P +HY C+VDL GR GLL EAK + MP EP V GA
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C +H +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 541 VKSPGFSWIE 550
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G D A LF+ +DVV+WT++I+GFVRNG EA+ F M V
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG--VA 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T VSVL + AG V + + G+ VHG Y+ + VF+G++L+D+YGK C +
Sbjct: 202 ANEMTVVSVLKA-AGKVED--VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M ++V TW A+I+ + + +++F+EM + + NE T +VL+ACA
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ G + H + K + ++DL + G L EA
Sbjct: 319 VGALHRGRRV-HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 4/202 (1%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W S+I F + N V P+ T+ +L + L + Q
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPF----QF 125
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H +I++ + F+ +LI Y G + A R+F KDV TW AMI N
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+V F EMK+ G+ ANE+T V+VL A + + V G + L V +
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSS 245
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+VD+ G+ +A++ MP
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMP 267
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 199/306 (65%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G +SA LFE M +R++V+W S+ING+ NG EA+ +F+ M + V P+
Sbjct: 40 YAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREM--GLRGVEPDGF 97
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA L G L LG++ H Y+++ + ++ G AL+DLY K G + +A +VF
Sbjct: 98 TMVSLLSACAEL---GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 154
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K V +W ++I LA N KEAL +F E++ KGL +EITFV VL AC+ +V+
Sbjct: 155 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVD 214
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G + F M ++ +VP +EHYGC+VDLLGRAGL+ +A EF+++MP +P+A V LLGA
Sbjct: 215 EGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGA 274
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IHG + L +LL+L+PKH G YV+LSN++A +RW+ +R+ M+ G++K P
Sbjct: 275 CTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTP 334
Query: 305 AYSLIE 310
+SL+E
Sbjct: 335 GHSLVE 340
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G++VH +RN VF+ L+ +Y G E A ++F+ M +++ TWN++I+ A
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N R EAL +F EM +G+ + T V++L+ACA + LG H + K + +
Sbjct: 74 NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA-HVYMVKVGLDGNLH 132
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL + G + +A + M
Sbjct: 133 AGNALLDLYAKCGSIRQAHKVFDEM 157
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++ SA +F++M +DV++WT++I+ + + C A +F M N VR
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG--VR 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS+LS CA VN G L +GK H YI + + + V + TALID+Y K G + A
Sbjct: 331 PNELTMVSLLSLCA--VN-GALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + +D+CTWN M++ + ++AL +F EM+ G++ N+ITF+ L AC+ A
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G LF M+ F +VP +EHYGC+VDLLGRAGLL EA + + SMP P+ ++ GA
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L ACKIH ++ R LL L+P++CG V++SNI+A RWN +RKA+ + GI
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 568 KKEPGMSSIE 577
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 11/237 (4%)
Query: 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
I LF +R +VSWT++I G++R E +F M+ V PN+ T +S++ SC
Sbjct: 186 ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN--VFPNDITMLSLIISC- 242
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
G V G + LGK++H YILRN +S+ + TAL+D+YGK G + A +F SM KDV T
Sbjct: 243 GFV--GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMT 300
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
W AMIS+ A + A +F +M++ G+R NE+T V++L+ CA +++G + FH+ +
Sbjct: 301 WTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYI 359
Query: 195 GK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
K EV I++ ++D+ + G +S A+ S + D ++ +HG
Sbjct: 360 DKQGVEVDVILK--TALIDMYAKCGDISGAQRLF-SEAIDRDICTWNVMMAGYGMHG 413
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
SVL +C+ + +GK++HG+ ++N +V VF+ AL+ +Y + G L A +F M
Sbjct: 114 SVLKACSQI---SVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKM 170
Query: 128 VIKDVCTWNAMISSLAS-----NSRE-----------------KEALVMFDEMKEKGLRA 165
+DV +W+ MI + + + R +E +F M E+ +
Sbjct: 171 SERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFP 230
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
N+IT ++++ +C V+LG L H+ + + + +VD+ G+ G + A+
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRL-HAYILRNGFGMSLALATALVDMYGKCGEIRSARAI 289
Query: 226 MRSM 229
SM
Sbjct: 290 FDSM 293
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G++ +A LF+NM KRDV+SWTS+I G+ + F +A+ +F+ MM V+
Sbjct: 166 LIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK--VK 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SVLS+CA L G L +G VH YI R+ + +++G +LID+Y K G +E+A
Sbjct: 224 PDKVTVASVLSACAHL---GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKA 280
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M KD +W ++IS LA N AL +F +M +G++ TFV +L ACA A
Sbjct: 281 LEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 340
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLE F SM +VP M+HYGCVVDLL R+G + +A EF++ MP PD V
Sbjct: 341 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRI 400
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+HG V L +RLLEL P G YV+LSN +AG++RW+ A +R+ M ++ +
Sbjct: 401 LLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDV 460
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 461 QKPSGSSSIE 470
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 151/288 (52%), Gaps = 16/288 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +F+ ML RD+VSW ++I G+ + + E + +F M ++
Sbjct: 65 LIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN--IK 122
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V ++ +C+ L G + YI N + + V++G LID+YG++G L A
Sbjct: 123 ADAVTMVKIILACSHL---GDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAA 179
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F +M +DV +W +MI+ + S+ +A+ +F EM ++ +++T +VL+ACA
Sbjct: 180 RKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHL 239
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++G + H + + V + ++D+ + G++ +A E M + D+ +
Sbjct: 240 GKLDVGWAVHH-YIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTS 297
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYV--VLSNIHAGL 282
++ ++G A+DL ++ R +QP H G +V +L+ HAGL
Sbjct: 298 VISGLAVNGFANSALDLFSQMLRE--GVQPTH-GTFVGILLACAHAGL 342
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ +H + L+ +F+ ALI +Y G L A ++F M+ +D+ +WN +I +
Sbjct: 42 ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS 101
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
++ KE L +FD M ++A+ +T V ++ AC S LG +E M
Sbjct: 102 QYNKYKEVLRLFDAMTAANIKADAVTMVKIILAC--------------SHLGDWEFADSM 147
Query: 204 EHY-------------GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG---ACKI 247
Y ++D+ GR G L+ A++ +MP S + G A +
Sbjct: 148 VKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQF 207
Query: 248 HGAVDLCHEV 257
AV L E+
Sbjct: 208 SDAVKLFQEM 217
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G+ K G++ +A LF+NM KRDV+SWTS+I G+ + F +A+ +F+ MM V+
Sbjct: 289 LVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK--VK 346
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SVLS+CA L G L +G VH YI R+ + +++G +LID+Y K G +E+A
Sbjct: 347 PDKVTVASVLSACAHL---GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKA 403
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M KD +W ++IS LA N AL +F +M +G++ TFV +L ACA A
Sbjct: 404 LEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 463
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLE F SM +VP M+HYGCVVDLL R+G + +A EF++ MP PD V
Sbjct: 464 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRI 523
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+HG V L +RLLEL P G YV+LSN +AG++RW+ A +R+ M ++ +
Sbjct: 524 LLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDV 583
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 584 QKPSGSSSIE 593
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 47/319 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +F+ ML RD+VSW ++I G+ + + E + +F M ++
Sbjct: 157 LIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN--IK 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
+ T V ++ +C+ L G + YI N + + V++G LID+YG
Sbjct: 215 ADAVTMVKIILACSHL---GDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELA 271
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
KVG L A ++F +M +DV +W +MI+ + S+
Sbjct: 272 QGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFS 331
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM ++ +++T +VL+ACA +++G + H + + V + +
Sbjct: 332 DAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHH-YIRRHGVQADIYVGNSL 390
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQ 265
+D+ + G++ +A E M + D+ +++ ++G A+DL ++ R +Q
Sbjct: 391 IDMYCKCGMVEKALEVFHRMK-DKDSVSWTSVISGLAVNGFANSALDLFSQMLRE--GVQ 447
Query: 266 PKHCGRYV--VLSNIHAGL 282
P H G +V +L+ HAGL
Sbjct: 448 PTH-GTFVGILLACAHAGL 465
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 117/275 (42%), Gaps = 37/275 (13%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
+ + ++ A L+F + +V W +I G ++ EAI ++ M + + N T
Sbjct: 61 LSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRM--HHQGITGNNLT 118
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ + +CA + + + G+++H + L+ +F+ ALI +Y G L A ++F
Sbjct: 119 LIFLFKACARVSD---IVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFD 175
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M+ +D+ +WN +I + ++ KE L +FD M ++A+ +T V ++ AC
Sbjct: 176 GMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILAC-------- 227
Query: 186 GLELFHSMLGKFEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSMPFE 232
S LG +E M Y ++D+ GR L A+ M
Sbjct: 228 ------SHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRER 281
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
S ++G K+ R+L + PK
Sbjct: 282 NIVSWNALVMGHAKVGNLT-----AARKLFDNMPK 311
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 190/303 (62%), Gaps = 5/303 (1%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K GD+D A F M ++V SWTS+I+GFV+ G EAI +F + VRPNE T
Sbjct: 88 KRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEA--VRPNEVTV 145
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VSVL++CA L G L LG+ VH Y ++ +V + LID+Y K GCLE A RVF
Sbjct: 146 VSVLAACADL---GDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYE 202
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M + V +W+AMI+ LA + + +EAL +F EM + G++ N +TF+ +L AC+ L++ G
Sbjct: 203 MEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEG 262
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
F SM + V+P +EHYGCVVDL RAGLL EA EF+ SMP +P+ V GALLG CK
Sbjct: 263 RRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCK 322
Query: 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAY 306
+H +DL E + L EL P + G YVV+SNI+A ERW A +RK M + G++K +
Sbjct: 323 VHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGW 382
Query: 307 SLI 309
S I
Sbjct: 383 SSI 385
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
+ID YVK G +++A +F M +R VVSW+++I G +G EA+C+F M + L V
Sbjct: 183 LIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEM---IKLGV 239
Query: 60 RPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+PN T++ +L +C+ GL++EG + Y ++ + ++DL+ + G L
Sbjct: 240 KPNGVTFIGLLHACSHMGLIDEGRRFFASMTADY----GVIPQIEHYGCVVDLFSRAGLL 295
Query: 118 ERAIRVFKSMVIK-DVCTWNAMI 139
E A SM IK + W A++
Sbjct: 296 EEAHEFILSMPIKPNGVVWGALL 318
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 36/225 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ T VL +C L + + GK +HG + ++F+ +++LYG G +
Sbjct: 6 VLPDTFTCSFVLKACLKLSD---VVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMG 62
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASN-------------------------------SR 147
A+ +F+ M +D TWN +I+ LA +
Sbjct: 63 DAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGK 122
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ +F +++++ +R NE+T V+VL ACA ++LG + H K +
Sbjct: 123 PNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHVCN 181
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
++D+ + G L A+ M E A++ +HG +
Sbjct: 182 TLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAE 225
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/313 (44%), Positives = 204/313 (65%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
MI YVK GD+ +A LF++ML+RD V SWT++I+G+ + EAI +F+ M +
Sbjct: 182 MIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRM--QLEN 239
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P+E ++VLS+CA L G L+LG+ +H YI ++++ V + +LID+Y K G +
Sbjct: 240 VKPDEIAILAVLSACADL---GALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIR 296
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTAC 177
+A+ +F++M K + TW MI+ LA + KEAL +F M KE ++ NE+TF+A+L+AC
Sbjct: 297 KALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSAC 356
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ LVELG + F SM ++ + P +EHYGC++DLLGRAG L EAKE + MPFE +A++
Sbjct: 357 SHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAI 416
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL A G +L E R L L+P HCG Y +LSN +A L RWN + +RK M +
Sbjct: 417 WGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRKVMQD 476
Query: 298 AGIRKIPAYSLIE 310
AG+ K+P S IE
Sbjct: 477 AGVEKVPGVSFIE 489
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 195/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G+++SA LFE M K++VV+W +II+G+ ++G EA+ +F M ++
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG--IK 420
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VSVL +CA + L GKQ+HGY +R+ +V +GT L+D+Y K G + A
Sbjct: 421 PDSFAIVSVLPACAHFL---ALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTA 477
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+ M +DV +W MI + + ++AL +F +M+E G + + I F A+LTAC+ A
Sbjct: 478 QKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHA 537
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+ F M + + P +EHY C+VDLLGRAG L EA +++M EPDA+V GA
Sbjct: 538 GLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGA 597
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++L + + L EL P + G YV+LSNI+A +RW LRK M E G+
Sbjct: 598 LLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGV 657
Query: 301 RKIPAYSLI 309
+K P S++
Sbjct: 658 KKQPGCSVV 666
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 149/264 (56%), Gaps = 12/264 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +++A +F+ M KRDVVSW +II G+ +NG EA+ +F M VN ++PN +
Sbjct: 165 YTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ--VNGIKPNSS 222
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSV+ CA L+ L GKQ+H Y +R+ I V + L+++Y K G + A ++F
Sbjct: 223 TLVSVMPVCAHLL---ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLF 279
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ M I+DV +WNA+I + NS+ EAL F+ M+ +G++ N IT V+VL ACA +E
Sbjct: 280 ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALE 339
Query: 185 LGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G ++ +++ FE ++ + +V++ + G ++ A + MP + + A++
Sbjct: 340 QGQQIHGYAIRSGFESNDVVGN--ALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIIS 396
Query: 244 ACKIHGAVDLCHEVGRRLLELQPK 267
HG HE +E+Q +
Sbjct: 397 GYSQHGHP---HEALALFIEMQAQ 417
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 9/250 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G++++A LFE M RDV SW +II G+ N EA+ F M V ++
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ--VRGIK 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L L G+Q+HGY +R+ + +G AL+++Y K G + A
Sbjct: 320 PNSITMVSVLPACAHLF---ALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSA 376
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+ M K+V WNA+IS + + EAL +F EM+ +G++ + V+VL ACA
Sbjct: 377 YKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF 436
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G ++ +++ FE ++ +VD+ + G ++ A++ MP E D
Sbjct: 437 LALEQGKQIHGYTIRSGFESNVVVG--TGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWT 493
Query: 240 ALLGACKIHG 249
++ A IHG
Sbjct: 494 TMILAYGIHG 503
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 7/222 (3%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81
++ + V W I G+V+NG + +A+ ++ M + P++ ++SV+ +C ++
Sbjct: 81 IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTG--INPDKLVFLSVIKACG---SQSD 135
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L G++VH I+ V +GTAL +Y K G LE A +VF M +DV +WNA+I+
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ N + EAL +F EM+ G++ N T V+V+ CA +E G ++ H + +
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI-HCYAIRSGIES 254
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ +V++ + G ++ A + MP D + A++G
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIG 295
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 188/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG + A LF M +D VSWT++I+G V+N EA+ +F NM ++
Sbjct: 338 MIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG--IK 395
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C N L GK +H YI ++ ++V +GT+LID+Y K GCLE A
Sbjct: 396 PDEVTLVSVISAC---TNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESA 452
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACAR 179
+ VF +M + WNA+I LA N ++L MF EM+ NEITF VL+AC
Sbjct: 453 LEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRH 512
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G F M K+ ++P + HYGC+VDLLGRAG + EA+ + SMP PD G
Sbjct: 513 AGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWG 572
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG+C HG ++ VGR+L+ L P H G + +LSNI+A W DLR +M +
Sbjct: 573 ALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWH 632
Query: 300 IRKIPAYSLIEA 311
+ KIP S++E+
Sbjct: 633 VPKIPGSSVVES 644
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 31/257 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + + G +D A +F+ + ++DV +WT++I+ F RNG F EA+ +F +M G V
Sbjct: 206 MVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPV- 264
Query: 61 PNEATYVSVLSSCA------------GLVNEGGL--YLGKQ---VHGY-----------I 92
+EA V V+++CA GL GL L Q +H Y +
Sbjct: 265 -DEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+ L F ++I Y K G ++ A +F M KD +W MIS N + EAL
Sbjct: 324 FDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEAL 383
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F+ M+ +G++ +E+T V+V++AC +E G + H + + + + ++D+
Sbjct: 384 TIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSM-HEYIREHQYTITVILGTSLIDM 442
Query: 213 LGRAGLLSEAKEFMRSM 229
+ G L A E +M
Sbjct: 443 YMKCGCLESALEVFDTM 459
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
++++ L+G+ G ++ A +VF + KDV TW AMIS N + EAL +F +M+ +G
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSM 193
+E V V+ ACAR ++ G E+ H +
Sbjct: 264 VDEAVMVCVVAACARLEVTRNG-EMCHGL 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + ++CA + G+QVH + +R+ ++++ AL+ +Y GCL A
Sbjct: 101 PDCYTHTILAAACA---TRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+VF + + D +WN ++++ +A+ +F M E+G A
Sbjct: 158 RKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAA 202
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 188/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG + A LF M +D VSWT++I+G V+N EA+ +F NM ++
Sbjct: 338 MIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG--IK 395
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C N L GK +H YI ++ ++V +GT+LID+Y K GCLE A
Sbjct: 396 PDEVTLVSVISAC---TNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESA 452
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACAR 179
+ VF +M + WNA+I LA N ++L MF EM+ NEITF VL+AC
Sbjct: 453 LEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRH 512
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G F M K+ ++P + HYGC+VDLLGRAG + EA+ + SMP PD G
Sbjct: 513 AGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWG 572
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG+C HG ++ VGR+L+ L P H G + +LSNI+A W DLR +M +
Sbjct: 573 ALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWH 632
Query: 300 IRKIPAYSLIEA 311
+ KIP S++E+
Sbjct: 633 VPKIPGSSVVES 644
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 31/257 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + + G +D A +F+ + ++DV +WT++I+ F RNG F EA+ +F +M G V
Sbjct: 206 MVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPV- 264
Query: 61 PNEATYVSVLSSCA------------GLVNEGGL--YLGKQ---VHGY-----------I 92
+EA V V+++CA GL GL L Q +H Y +
Sbjct: 265 -DEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+ L F ++I Y K G ++ A +F M KD +W MIS N + EAL
Sbjct: 324 FDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEAL 383
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F+ M+ +G++ +E+T V+V++AC +E G + H + + + + ++D+
Sbjct: 384 TIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSM-HEYIREHQYTITVILGTSLIDM 442
Query: 213 LGRAGLLSEAKEFMRSM 229
+ G L A E +M
Sbjct: 443 YMKCGCLESALEVFDTM 459
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
++++ L+G+ G ++ A +VF + KDV TW AMIS N + EAL +F +M+ +G
Sbjct: 204 SSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWP 263
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSM 193
+E V V+ ACAR ++ G E+ H +
Sbjct: 264 VDEAVMVCVVAACARLEVTRNG-EMCHGL 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + ++CA + G+QVH + +R+ ++++ AL+ +Y GCL A
Sbjct: 101 PDCYTHTILAAACA---TRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+VF + + D +WN ++++ +A+ +F M E+G A
Sbjct: 158 RKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAA 202
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 204/309 (66%), Gaps = 4/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K GD+ +A +F+ + +DV +W+++I G+V+N EA+ +F+ + G N+ R
Sbjct: 221 LVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM-R 279
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T ++V+S+CA L G L G+ VH YI R + SV + +LID++ K G ++ A
Sbjct: 280 PNEVTILAVISACAQL---GDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA 336
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM KD+ +WN+M++ LA + +EAL F M+ L+ +EITF+ VLTAC+ A
Sbjct: 337 KRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHA 396
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF+ + + V EHYGC+VDLL RAGLL+EA+EF+R MP +PD ++ G+
Sbjct: 397 GLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+++ ++L E R LLEL+P + G Y++LSNI+A + WN +R+ M E GI
Sbjct: 457 MLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGI 516
Query: 301 RKIPAYSLI 309
+K P S +
Sbjct: 517 QKTPGCSSV 525
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 25/293 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ SA LFE M R+ V WTS+I+G+++N C EA+ ++K M +
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM--EEDGFS 177
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +++S+CA L + G +G ++H +I ++ + +G+AL+++Y K G L+ A
Sbjct: 178 PDEVTMATLVSACAELKDLG---VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACAR 179
+VF + KDV W+A+I N+R EAL +F E+ +R NE+T +AV++ACA+
Sbjct: 235 RQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQ 294
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G H + + + + ++D+ + G + AK SM ++ D
Sbjct: 295 LGDLETG-RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWN 352
Query: 240 ALLGACKIHGAVDLCHEVGRRLL---------ELQPKHCGRYVVLSNI-HAGL 282
+++ +HG +GR L +LQP VL+ HAGL
Sbjct: 353 SMVNGLALHG-------LGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGL 398
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 113/218 (51%), Gaps = 6/218 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
DV++W S++ FV + A+ + M+ V P+ T+ S+L CA L+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLLKGCALLLE---FKV 97
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
GK +HG +++ + +++ T L+++Y G L+ A +F+ M ++ W +MIS
Sbjct: 98 GKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMK 157
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EAL+++ +M+E G +E+T +++ACA + + +G++L HS + + ++
Sbjct: 158 NHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL-HSHIREMDMKICAV 216
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+V++ + G L A++ + + D AL+
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALI 253
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 193/312 (61%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y+K G A LF M +++VSW S+I+G G F EA+ +F+ M MG
Sbjct: 279 LLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMG---- 334
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++P+ T V VL+SCA L G L LGK VH YI +N + ++ AL+D+Y K G ++
Sbjct: 335 LKPDSVTLVGVLNSCANL---GDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSID 391
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A VF++M KDV ++ AMI A + + AL +F EM G+R + +T V VL+AC+
Sbjct: 392 QAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACS 451
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+E G F M + + P EHYGC+VDLLGRAGL+SEA+ F MP PDASV
Sbjct: 452 HAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVW 511
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGACKIH V+L V ++L+E++P+ G Y+++SNI++ RW A RKAM +
Sbjct: 512 GSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQN 571
Query: 299 GIRKIPAYSLIE 310
I+K P S IE
Sbjct: 572 NIKKTPGCSSIE 583
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 144/285 (50%), Gaps = 19/285 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y +G +++ +F+ D++SWT++I + + G EAI F M +
Sbjct: 183 YAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTAD-----RM 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLERAIR 122
T V VLS+C+ L G LGK++ Y+ + ++ VF+G AL+D+Y K G A +
Sbjct: 238 TLVVVLSACSQL---GDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQ 294
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F M +K++ +WN+MIS LA KEAL MF M+ GL+ + +T V VL +CA
Sbjct: 295 LFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGD 354
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+ELG + HS + K + +VD+ + G + +A ++M + D A++
Sbjct: 355 LELG-KWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCK-DVYSYTAMI 412
Query: 243 GACKIHGAVD----LCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
+HG D + E+ R + ++P H VLS HAGL
Sbjct: 413 VGFAMHGKADRALAIFSEMPR--MGVRPDHVTLVGVLSACSHAGL 455
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 43/250 (17%)
Query: 39 NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV 98
N F +++ M+ + + P+ T +L +C+ Q+H + ++ +
Sbjct: 116 NNTFTHIFSLYRQML--LIGLSPDTYTLPYLLKACS---QSHAFIEALQIHAHSIKTGLS 170
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
++F+ L+ Y G +E +VF D+ +W +I + + EA+ F M
Sbjct: 171 SNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM 230
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELF----------HS--MLGK---------- 196
A+ +T V VL+AC++ LG ++ HS LG
Sbjct: 231 ---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCG 287
Query: 197 --------FEVVPI--MEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLG 243
F ++P+ + + ++ L GL EA M++M +PD+ L +L
Sbjct: 288 QPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLN 347
Query: 244 ACKIHGAVDL 253
+C G ++L
Sbjct: 348 SCANLGDLEL 357
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 204/310 (65%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G ++ A +F+ M R++ +W+ +ING+ +N CF +AI +F+ +M +V
Sbjct: 191 MVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE-LMKREGVV- 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L G++ H Y++++ + +++ +GTAL+D+Y + G +E+A
Sbjct: 249 ANETVMVSVISSCAHL---GALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
IRVF+ + KD +W+++I LA + +A+ F +M G +IT AVL+AC+
Sbjct: 306 IRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHG 365
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE++ +M + + P +EHYGC+VD+LGRAG L+EA+ F+ MP +P+A +LGA
Sbjct: 366 GLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGA 425
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKI+ ++ VG L+E++P+H G YV+LSNI+A +W + LR M E +
Sbjct: 426 LLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLV 485
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 486 KKPPGWSLIE 495
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+++ Y K G +E A +F M +++ TW+ MI+ A N+ ++A+ +F+ MK +G+
Sbjct: 189 TSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV 248
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
ANE V+V+++CA +E G E H + K + + +VD+ R G + +A
Sbjct: 249 ANETVMVSVISSCAHLGALEFG-ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIR 307
Query: 225 FMRSMPFEPDASVLGALLGACKIHG 249
+P + D+ +++ +HG
Sbjct: 308 VFEELP-DKDSLSWSSIIKGLAVHG 331
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 105/243 (43%), Gaps = 20/243 (8%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL---------YGKVGCL 117
+++L SC+ + K +HG++LR ++ VF+ + L+ L + L
Sbjct: 16 LALLQSCSSFSDL------KIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLL 69
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +F + ++ +N +I ++ + +A + +M + + + ITF ++ A
Sbjct: 70 GYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKAS 129
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ V +G E HS + +F + +V + GL++ A MPF S
Sbjct: 130 TEMECVVVG-EQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSW 188
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+ G CK G V+ E+ E+ ++ + ++ N +A + +A DL + M
Sbjct: 189 TSMVAGYCKC-GMVEDAREM---FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKR 244
Query: 298 AGI 300
G+
Sbjct: 245 EGV 247
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/309 (43%), Positives = 198/309 (64%), Gaps = 4/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG+++ + +FE M R+V SW +I G+VRNG F EA+ FK M+ + +V
Sbjct: 93 VLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVD-GVVV 151
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T V+VLS+C+ L G L +GK VH Y ++F+G ALID+Y K G +E+A
Sbjct: 152 PNDYTVVAVLSACSRL---GDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKA 208
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + +KD+ TWN +I+SLA + +AL +F+ MK G R + +TFV +L+AC
Sbjct: 209 LDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHM 268
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F SM+ + +VP +EHYGC+VDLLGRAGL+++A + +R MP EPD + A
Sbjct: 269 GLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAA 328
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ + V++ +RL+EL+P + G +V+LSNI+ L R L+ AM + G
Sbjct: 329 LLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGF 388
Query: 301 RKIPAYSLI 309
RK+P S+I
Sbjct: 389 RKVPGCSVI 397
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V DM SA LF+ + DVV W I++G++ G A +F M
Sbjct: 31 VVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVAARELFDRM-------- 82
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
C V ++ Y G +E
Sbjct: 83 ----------PDC--------------------------DVMSWNTVLSGYANNGEVELF 106
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
++VF+ M ++V +WN +I N KEAL F M G + N+ T VAVL+AC+R
Sbjct: 107 VKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSR 166
Query: 180 AQLVELG 186
+E+G
Sbjct: 167 LGDLEIG 173
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 201/314 (64%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDV--VSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++ GY NG ++ A LF+ + +R+ VS++++++G+V+NGCF E I +F+ +
Sbjct: 167 LVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFRELKDRN-- 224
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGC 116
V+PN + SVLS+CA + G GK +H Y+ +N + + +GTALID Y K GC
Sbjct: 225 VKPNNSLLASVLSACASV---GAFEEGKWIHAYVDQNKSQCYYELELGTALIDFYTKCGC 281
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A RVF +M KDV W+AM+ LA N++ +EAL +F+EM++ G R N +TF+ VLTA
Sbjct: 282 VEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTA 341
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C L L+LF M K+ +V +EHYGCVVD+L R+G + EA EF++SM EPD
Sbjct: 342 CNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGV 401
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LL C +H ++L H+VG+ L+EL+P H GRYV+LSN++A + +W + RK M
Sbjct: 402 IWGSLLNGCFLHNNIELGHKVGKYLVELEPGHGGRYVLLSNVYATMGKWEAVLETRKFMK 461
Query: 297 EAGIRKIPAYSLIE 310
+ G+ + S IE
Sbjct: 462 DRGVPAVSGSSFIE 475
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 14/220 (6%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
+ D+ A LF ++ ++ + +II F + + F M+ V PN
Sbjct: 44 AFYARSDLRYAHTLFSHIPFPNLFDYNTIITAFSPH----YSSLFFIQMLNAA--VSPNS 97
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ +LS + + Q+H +I+R V ++ T+L+ Y G A R+
Sbjct: 98 RTFSLLLSKSSPSLP-----FLHQLHSHIIRRGHVSDFYVITSLLAAYSNHGSTRAARRL 152
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F K+V W ++++ +N +A +FD + E+ N++++ A+++ +
Sbjct: 153 FDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPER--ERNDVSYSAMVSGYVKNGCF 210
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
G++LF + + V P V+ G E K
Sbjct: 211 REGIQLFRELKDR-NVKPNNSLLASVLSACASVGAFEEGK 249
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY+ +G + A LF+ M +++ VSW ++I G+VR G F EA+ VF +M V+ R
Sbjct: 184 LISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDM--QVSGFR 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A+ V L++CA L G L G+ +H Y+ R+ + L +GTALID+Y K GC+E A
Sbjct: 242 LNRASIVGALTACAFL---GALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMA 298
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV + +IS LA++ + + A+ +F+ M+++G+ NE+TFV VL AC+R
Sbjct: 299 CSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRM 358
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ GL +F SM ++ + P ++HYGC+VDLLGRAG + EAK+ +R MP +PD+ LGA
Sbjct: 359 GMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGA 418
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG V L E+ L++ H G +V+LSN++A ++W A+ +RK M + I
Sbjct: 419 LLDACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNI 478
Query: 301 RKIPAYSLIE 310
RK+P S IE
Sbjct: 479 RKLPGCSSIE 488
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 36/193 (18%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF + + W +++ FV A ++K+M+ + L PN T+ V+ +C +
Sbjct: 68 LFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYL--PNNFTFSFVIRACIDV 125
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
N L +G HG +++ F+ LI LY G ++ A +F + +DV TW
Sbjct: 126 FN---LQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWT 182
Query: 137 AMISSLASN-----SRE--------------------------KEALVMFDEMKEKGLRA 165
+IS ++ +RE KEAL +F +M+ G R
Sbjct: 183 CLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRL 242
Query: 166 NEITFVAVLTACA 178
N + V LTACA
Sbjct: 243 NRASIVGALTACA 255
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 81/216 (37%), Gaps = 15/216 (6%)
Query: 64 ATYVSVLSSCAGLVNEGGLYLG--KQVHGYILRNEIVLSVFMGTALIDLYGKVGC---LE 118
+ Y+ L+++ GL + KQ+ ++ + + +I L+ L
Sbjct: 4 SRYLKASKKTISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLF 63
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F + K WN M+ + + A ++ M E N TF V+ AC
Sbjct: 64 YAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACI 123
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSMPFEPD 234
+++GL FH + KF E Y V + L G + A+ M M + D
Sbjct: 124 DVFNLQMGL-CFHGQVVKFG----WESYDFVQNGLIHLYANCGFMDLARN-MFDMSIKRD 177
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270
L+ G V + E+ R+ E P G
Sbjct: 178 VVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWG 213
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D+ +A LF++ RDV+ WT++++ + + C +A +F M + VR
Sbjct: 339 LVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM--RTSGVR 396
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T VS+LS CA G L LGK VH YI + + + + TAL+D+Y K G + A
Sbjct: 397 PTKVTIVSLLSLCA---VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + +D+C WNA+I+ A + +EAL +F EM+ +G++ N+ITF+ +L AC+ A
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 513
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G +LF M+ F +VP +EHYGC+VDLLGRAGLL EA E ++SMP +P+ V GA
Sbjct: 514 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGA 573
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC++H L +LLE++P++CG V++SNI+A RW+ A +RK M G+
Sbjct: 574 LVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 633
Query: 301 RKIPAYSLIE 310
+K P +S+IE
Sbjct: 634 KKEPGHSVIE 643
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 146/267 (54%), Gaps = 17/267 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A LF + ++ VVSWT++I G +R+ E +F M +
Sbjct: 238 LLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEEN--IF 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +S++ C G L LGKQ+H YILRN +S+ + TAL+D+YGK + A
Sbjct: 296 PNEITMLSLIVECGF---TGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNA 352
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F S +DV W AM+S+ A + +A +FD+M+ G+R ++T V++L+ CA A
Sbjct: 353 RALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVA 412
Query: 181 QLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEA-KEFMRSMPFEPDASV 237
++LG + HS + K EV I+ +VD+ + G ++ A + F+ ++ D +
Sbjct: 413 GALDLG-KWVHSYIDKERVEVDCILN--TALVDMYAKCGDINAAGRLFIEAI--SRDICM 467
Query: 238 LGALLGACKIHG----AVDLCHEVGRR 260
A++ +HG A+D+ E+ R+
Sbjct: 468 WNAIITGFAMHGYGEEALDIFAEMERQ 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 40/278 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++ A L+F+ M++RDVVSW+++I RN F A+ + + M N VRP+E VS++
Sbjct: 145 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM--NFMQVRPSEVAMVSMV 202
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIV--LSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+ A N + +GK +H Y++RN + V TAL+D+Y K G L A ++F +
Sbjct: 203 NLFADTAN---MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT 259
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
K V +W AMI+ ++R +E +F M+E+ + NEIT ++++ C ++LG +
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319
Query: 189 LFHSML-GKFEV-----VPIMEHYGCVVDLLGRAGLLSEAK------------------- 223
L +L F V +++ YG D+ L +
Sbjct: 320 LHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANC 379
Query: 224 --------EFMRSMPFEPDASVLGALLGACKIHGAVDL 253
+ MR+ P + +LL C + GA+DL
Sbjct: 380 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDL 417
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
SVL +C + LGK++HG++L+ + VF+G AL+ +YG+ C+E A VF M
Sbjct: 99 SVLKACGQV---SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKM 155
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ +DV +W+ MI SL+ N AL + EM +R +E+ V+++ A + +G
Sbjct: 156 MERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G +++ ++ A LF++ RDV+ WT++++ + + C +A +F M + VR
Sbjct: 299 MIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM--RTSGVR 356
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T VS+LS CA G L LGK VH YI + + + + TAL+D+Y K G + A
Sbjct: 357 PTKVTIVSLLSLCAV---AGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 413
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + +D+C WNA+I+ A + +EAL +F EM+ +G++ N+ITF+ +L AC+ A
Sbjct: 414 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 473
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G +LF M+ F +VP +EHYGC+VDLLGRAGLL EA E ++SMP +P+ V GA
Sbjct: 474 GLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGA 533
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC++H L +LLE++P++CG V++SNI+A RW+ A +RK M G+
Sbjct: 534 LVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGM 593
Query: 301 RKIPAYSLIE 310
+K P +S+IE
Sbjct: 594 KKEPGHSVIE 603
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 50/287 (17%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A L+F+ M++RDVVSW+++I RN F A+ + + M N VRP+E VS+++
Sbjct: 178 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM--NFMQVRPSEVAMVSMVNLF 235
Query: 74 AGLVNEGGLYLGKQVHGYILRNEI--VLSVFMGTALIDLYGK------------------ 113
A N + +GK +H Y++RN + V TAL+D+Y K
Sbjct: 236 ADTAN---MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT 292
Query: 114 --------VGC-----LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
GC LE A +F S +DV W AM+S+ A + +A +FD+M+
Sbjct: 293 VVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 352
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGL 218
G+R ++T V++L+ CA A ++LG + HS + K EV I+ +VD+ + G
Sbjct: 353 SGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILN--TALVDMYAKCGD 409
Query: 219 LSEA-KEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRR 260
++ A + F+ ++ D + A++ +HG A+D+ E+ R+
Sbjct: 410 INAAGRLFIEAI--SRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 454
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 28 SWTSIINGFVRNGCFGEAICVF---KNMMGNV-NLVRPNEATYVSVLSSCAGLVNEGGLY 83
W +I + + A+ V+ + M V N + P SVL +C +
Sbjct: 91 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAP------SVLKACGQV---SWTQ 141
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LGK++HG++L+ + VF+G AL+ +YG+ C+E A VF M+ +DV +W+ MI SL+
Sbjct: 142 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLS 201
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
N AL + EM +R +E+ V+++ A + +G
Sbjct: 202 RNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 244
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 204/314 (64%), Gaps = 11/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G+ D A LF+ + ++DV+SW ++I G+ + EA+ +F+ M+ + V+
Sbjct: 304 LIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN--VK 361
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI---LRNEIVLSVFMGTALIDLYGKVGCL 117
PN+ T++ +L +CA L G L LGK VH YI LRN S++ T+LID+Y K GC+
Sbjct: 362 PNDVTFLGILHACACL---GALDLGKWVHAYIDKNLRNSSNASLW--TSLIDMYAKCGCI 416
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTA 176
E A RVF+SM +++ +WNAM+S A + + AL +F EM KGL R ++ITFV VL+A
Sbjct: 417 EAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSA 476
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C +A LV+LG + F SM+ + + P ++HYGC++DLL RA EA+ M++M EPD +
Sbjct: 477 CTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGA 536
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LL ACK HG V+ V RL +L+P++ G +V+LSNI+AG RW+ +R +
Sbjct: 537 IWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLN 596
Query: 297 EAGIRKIPAYSLIE 310
+ G++K+P + IE
Sbjct: 597 DKGMKKVPGCTSIE 610
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 46/334 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV G +D A LF+ + +DVVSW ++I+G+V++G F EAI F M N++
Sbjct: 203 LITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ-EANVL- 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN++T V VLS+C G G L GK + ++ N ++ + ALID+Y K G + A
Sbjct: 261 PNKSTMVVVLSAC-GHTRSGEL--GKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV +WN MI + S +EAL +F+ M ++ N++TF+ +L ACA
Sbjct: 318 RELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACL 377
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP--------- 230
++LG + H+ + K + ++D+ + G + A+ RSM
Sbjct: 378 GALDLG-KWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNA 436
Query: 231 --------------------------FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263
F PD +L AC G VDL H+ R +++
Sbjct: 437 MLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQD 496
Query: 264 --LQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ PK Y + ++ A E++ A L K M
Sbjct: 497 YGISPK-LQHYGCMIDLLARAEKFEEAEILMKNM 529
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 8 NGDMDSAILLFE---NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+GD+ A+ LFE K +V W S+I G+ + ++ +F M+ V+PN
Sbjct: 75 SGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRML--YYGVQPNSH 132
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--------- 115
T+ + SC + GKQ+H + L+ + + + T++I +Y VG
Sbjct: 133 TFPFLFKSC---TKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVF 189
Query: 116 ----------------------CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
CL+ A R+F + +KDV +WNAMIS + R +EA+V
Sbjct: 190 DKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIV 249
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
F EM+E + N+ T V VL+AC + ELG
Sbjct: 250 CFYEMQEANVLPNKSTMVVVLSACGHTRSGELG 282
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 199/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDV--VSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++D Y K+G ++ A LF+NM +R+ V+W ++I+ +V+ G FG AI +F+ M
Sbjct: 71 LLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN-- 128
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P E T VS+LS+CA L G L +G+ +HGYI + + V +G ALID+Y K G LE
Sbjct: 129 VKPTEVTMVSLLSACAHL---GALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALE 185
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
AI VF + K++ WN++I L N R +EA+ F M+++G++ + +TFV +L+ C+
Sbjct: 186 AAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCS 245
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ L+ G F MLG + + P +EHYGC+VDLLGRAG L EA E +R+MP +P++ VL
Sbjct: 246 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVL 305
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL AC+IH L +V ++LLEL P G YV LSN++A L RW+ RK M++
Sbjct: 306 GSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKR 365
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 366 GVHKTPGCSSIE 377
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N V P++ ++ +L SCA G LG+ H I++ + + T L+D Y K G
Sbjct: 24 NDVLPSKTSFSLILRSCA---ISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGY 80
Query: 117 LERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
+E A +F +M + + TWN MIS+ A+ MF +M+ + ++ E+T V++L
Sbjct: 81 VEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL 140
Query: 175 TACARAQLVELG 186
+ACA +++G
Sbjct: 141 SACAHLGALDMG 152
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK GD++ A LFE + ++VVSW +I G+ C+ EA+ +F+ MM + +
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN--ID 359
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
PN+ T++S+L +CA L G L LGK VH Y+ +N + +V + T+LID+Y K G L
Sbjct: 360 PNDVTFLSILPACANL---GALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLA 416
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F M K + TWNAMIS A + AL +F M +G ++ITFV VLTAC
Sbjct: 417 VAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACK 476
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+ LG F SM+ ++V P + HYGC++DL GRAGL EA+ +++M +PD ++
Sbjct: 477 HAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIW 536
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LLGAC+IH ++L V + L EL+P++ YV+LSNI+AG RW +R + +
Sbjct: 537 CSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDN 596
Query: 299 GIRKIPAYSLIE 310
++K+P S IE
Sbjct: 597 RMKKVPGCSSIE 608
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 8/254 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G +D A LF+ + RDVVSW ++I+G+ ++G EA+ F+ M V
Sbjct: 200 LITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM--RRAKVT 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T +SVLS+CA + L LG V +I + ++ + LID+Y K G LE A
Sbjct: 258 PNVSTMLSVLSACAQ--SGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + K+V +WN MI S KEAL +F M + + N++TF+++L ACA
Sbjct: 316 SNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANL 375
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG + H+ + K + + + ++D+ + G L+ AK M + A+
Sbjct: 376 GALDLG-KWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-W 433
Query: 239 GALLGACKIHGAVD 252
A++ +HG D
Sbjct: 434 NAMISGFAMHGHTD 447
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 36/204 (17%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD+ A+ LF+ + + V W +I G + A+ + +M+ + PNE T+
Sbjct: 75 HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSG--TEPNEYTFP 132
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK-------------- 113
S+ SC + G + GKQVH ++L+ + + F+ T+LI++Y +
Sbjct: 133 SIFKSCTKI---RGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKS 189
Query: 114 -----------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
G L+ A +F + ++DV +WNAMIS A + R +EA+ F+
Sbjct: 190 SMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFE 249
Query: 157 EMKEKGLRANEITFVAVLTACARA 180
EM+ + N T ++VL+ACA++
Sbjct: 250 EMRRAKVTPNVSTMLSVLSACAQS 273
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G+V G +D+A F M +RD VSWT++I+G++R C+ EA+ +F+ M + ++
Sbjct: 203 IVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM--QTSKIK 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L LG+ + YI +N++ F+G ALID+Y K G +E A
Sbjct: 261 PDEFTMVSVLTACAQL---GALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F ++ +D TW AM+ LA N +EAL MF +M + + +E+T+V VL+AC
Sbjct: 318 LSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHT 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G + F SM + + P + HYGC+VDLLG+AG L EA E +++MP +P++ V GA
Sbjct: 378 GMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGA 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++ ++LEL+P + YV+ NI+A +W++ +LR+ M++ GI
Sbjct: 438 LLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGI 497
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 498 KKTPGCSLIE 507
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 58/289 (20%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GDM A LF+ + + V SW + G+ R C + ++ M+ V+P+ TY
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERN--VKPDCYTYPF 119
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+ G L LG+++H ++++ + +VF ALI++Y G ++ A +F
Sbjct: 120 LFK---GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSC 176
Query: 129 IKDVCTWNAMISSLASNSRE---------------------------------------- 148
DV TWNAMIS ++
Sbjct: 177 KSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMID 236
Query: 149 --------KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
KEAL++F EM+ ++ +E T V+VLTACA+ +ELG E + + K +V
Sbjct: 237 GYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVK 295
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGAC 245
++D+ + G + A ++P F A V+G + C
Sbjct: 296 NDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 202/314 (64%), Gaps = 12/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K G+M A +FE+M +RDV SW+S I+G+V+ G + EA+ VF+ M V
Sbjct: 186 MLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRA----VG 241
Query: 61 P--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P NE T VSVLS+CA L G L G+ +H YI+ N + +++ + T+L+D+Y K G +E
Sbjct: 242 PKANEVTMVSVLSACAHL---GALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIE 298
Query: 119 RAIRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A+ VF+ S DV WNAMI LA++ +E+L +F EM+ G+R++EIT++ +L A
Sbjct: 299 EALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAA 358
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA LV+ F S++ K + P EHY C+VD+L RAG L+ A +F+ +P EP AS
Sbjct: 359 CAHGGLVKEAWNFFESLV-KRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTAS 417
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LGA+ C H DL VGR+L+EL P + GRY+ LSN++A ++RW+ + +R+AM
Sbjct: 418 MLGAIFSGCINHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAME 477
Query: 297 EAGIRKIPAYSLIE 310
G++K P +S +E
Sbjct: 478 RRGVKKSPGFSFVE 491
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 38/277 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD+D + +F + + SW II G+ + ++ +F M+ + V P+ TY
Sbjct: 61 SGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHG--VAPDYLTYP 118
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
++ + A L + G VH I++ F+ +LI +Y G + A +VF+SM
Sbjct: 119 FLVKASARLSKQKS---GVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESM 175
Query: 128 VIKDVCTWNAMISSLAS--------------NSRE-----------------KEALVMFD 156
K++ +WN+M+ A R+ +EA+ +F+
Sbjct: 176 QGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFE 235
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
+M+ G +ANE+T V+VL+ACA ++ G + H + + M +VD+ +
Sbjct: 236 KMRAVGPKANEVTMVSVLSACAHLGALQKG-RMMHQYIIDNLLPMTMVLQTSLVDMYAKC 294
Query: 217 GLLSEAKEFMRSMP-FEPDASVLGALLGACKIHGAVD 252
G + EA R + + D + A++G HG V+
Sbjct: 295 GAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVE 331
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 196/311 (63%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
++ G+ G +D A F+ + +RD VSWT++I+G++R F EA+ +F+ M M NV
Sbjct: 280 IVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV--- 336
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+E T VS+L++CA L G L LG+ V YI +N I F+G ALID+Y K G + +
Sbjct: 337 KPDEFTMVSILTACAHL---GALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGK 393
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VFK M KD TW AMI LA N +EAL MF M E + +EIT++ VL AC
Sbjct: 394 AKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTH 453
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A +VE G F SM + + P + HYGC+VDLLGRAG L EA E + +MP +P++ V G
Sbjct: 454 AGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWG 513
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC++H V L +++LEL+P++ YV+L NI+A +RW +RK M+E G
Sbjct: 514 SLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERG 573
Query: 300 IRKIPAYSLIE 310
I+K P SL+E
Sbjct: 574 IKKTPGCSLME 584
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 40/258 (15%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN-EGGLY 83
+VV+W +++G+ R F ++ +F M V PN T V +LS+C+ L + EGG +
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEM--EKRGVSPNSVTLVLMLSACSKLKDLEGGKH 229
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ K ++G I+ ++L LID++ G ++ A VF +M +DV +W ++++ A
Sbjct: 230 IYKYINGGIVERNLILE----NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285
Query: 144 S-------------------------------NSREKEALVMFDEMKEKGLRANEITFVA 172
+ +R EAL +F EM+ ++ +E T V+
Sbjct: 286 NIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVS 345
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+LTACA +ELG E + + K + ++D+ + G + +AK+ + M +
Sbjct: 346 ILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK 404
Query: 233 PDASVLGALLG-ACKIHG 249
+ ++G A HG
Sbjct: 405 DKFTWTAMIVGLAINGHG 422
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 133/282 (47%), Gaps = 15/282 (5%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++G M A +F+ + + + W ++I G+ R + ++ M+ + ++P+ T+
Sbjct: 53 ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASN--IKPDRFTF 110
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L G L GK + + +++ ++F+ A I ++ ++ A +VF
Sbjct: 111 PFLLK---GFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDM 167
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+V TWN M+S + K++ ++F EM+++G+ N +T V +L+AC++ + +E G
Sbjct: 168 GDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGG 227
Query: 187 LELFHSMLGKF-EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
++ + G E I+E+ ++D+ G + EA+ +M S + G
Sbjct: 228 KHIYKYINGGIVERNLILEN--VLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285
Query: 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
I G +DL R+ + P+ YV + + G R NR
Sbjct: 286 NI-GQIDL----ARKYFDQIPER--DYVSWTAMIDGYLRMNR 320
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 199/313 (63%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+ GD+ A LF+ RDVV WT++ING+V+ F +A+ +F+ M + V+
Sbjct: 416 MISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREM--QIQRVK 473
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V++L+ CA L G L GK +HGY+ N I + V +GTALI++Y K GC++++
Sbjct: 474 PDKFTVVTLLTGCAQL---GALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 530
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + KD +W ++I LA N + EAL +F EM+ G + ++ITF+ VL+AC+
Sbjct: 531 LEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHG 590
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-- 238
LVE G F+SM + P +EHYGCV+DLLGRAGLL EA+E ++ +P E V+
Sbjct: 591 GLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPL 650
Query: 239 -GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALL AC+IH VD+ + ++L ++ + +L+NI+A ++RW A +R+ M E
Sbjct: 651 YGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 710
Query: 298 AGIRKIPAYSLIE 310
G++K+P SLIE
Sbjct: 711 LGVKKMPGCSLIE 723
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 37/274 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + ++++A LF+ M RD VSW +I+G+VR F +AI F+ M N +
Sbjct: 284 LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN-EK 342
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS LS+C L N L LG ++H Y+ R E+ + + AL+D+Y K GCL A
Sbjct: 343 PDEATVVSTLSACTALKN---LELGDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIA 398
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
+F M +K DV W AMI+
Sbjct: 399 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 458
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM+ + ++ ++ T V +LT CA+ +E G + H L + + + +
Sbjct: 459 DAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTAL 517
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+++ + G + ++ E + + AS + G
Sbjct: 518 IEMYSKCGCVDKSLEIFYELEDKDTASWTSIICG 551
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 114/222 (51%), Gaps = 8/222 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F + + + ++ + + G + + +F+ + + + P+ TY
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDG--LWPDGFTYPF 248
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL + L + + G++V G+I++ + L ++ +LID+Y ++ +E A ++F M
Sbjct: 249 VLKAIGCLRD---VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMT 305
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGL 187
+D +WN MIS R ++A+ F EM+++G + +E T V+ L+AC + +ELG
Sbjct: 306 TRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGD 365
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E+ + + + +++ ++D+ + G L+ A+ M
Sbjct: 366 EIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 405
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 201/311 (64%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY K G +D A LF+ M +RDVVSW S+I+ +V+NG EA+ +FK MM + V
Sbjct: 229 VVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMM--LAGVS 286
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ S+LS+CA + G L +G+ +H Y+ R+++ VF+ TAL+D+Y K GC++ A
Sbjct: 287 ADSIIITSILSACAQI---GALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTA 343
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M K++C+WNAM+S LA + AL +F +M+ G+ N+ITFVAVL+AC+
Sbjct: 344 FGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHI 403
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G + F+ M +F + P +EHYGC+VD+L R GL++EAKE +R+MP EP+ + GA
Sbjct: 404 GSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGA 463
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+HG ++ +V + +L + G YV+LSNI A +WN RK M + G+
Sbjct: 464 LLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGV 523
Query: 301 -RKIPAYSLIE 310
+KIP YS IE
Sbjct: 524 EKKIPGYSSIE 534
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 46/249 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y+K G + A LLF+ M +VV+W ++I G CFG
Sbjct: 167 LIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITG-----CFG----------------- 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
C G +++ G + +V A++ Y K+G ++ A
Sbjct: 205 ------------C------GDTERARRLFGEMPER----NVGSWNAVVGGYSKLGHVDIA 242
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +W +MIS+ N R EAL +F EM G+ A+ I ++L+ACA+
Sbjct: 243 RSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQI 302
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++G H+ + + ++ + +VD+ + G + A +MP + A
Sbjct: 303 GALDMG-RWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMP-RKNLCSWNA 360
Query: 241 LLGACKIHG 249
+L IHG
Sbjct: 361 MLSGLAIHG 369
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 17/247 (6%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++D A +F + D SWT++I GFV +A+ F +M V N+ T++ V
Sbjct: 75 NIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKAL-EFYGLMRQRG-VELNKFTFLFV 132
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L + GL G+ VHG +++ VF ALI +Y K G + A +F M
Sbjct: 133 LKA-YGL--RPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPN 189
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+V TWN MI+ + A +F EM E+ N ++ AV+ ++ V++ L
Sbjct: 190 HNVVTWNTMITGCFGCGDTERARRLFGEMPER----NVGSWNAVVGGYSKLGHVDIARSL 245
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF---EPDASVLGALLGACK 246
F ++ + +VV +G ++ + G +EA E + M D+ ++ ++L AC
Sbjct: 246 F-DLMPERDVVS----WGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACA 300
Query: 247 IHGAVDL 253
GA+D+
Sbjct: 301 QIGALDM 307
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 199/313 (63%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+ GD+ A LF+ RDVV WT++ING+V+ F +A+ +F+ M + ++
Sbjct: 370 MISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREM--QIQKIK 427
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V++L+ CA L G L GK +HGY+ N I + V +GTALI++Y K GC++++
Sbjct: 428 PDKFTVVTLLTGCAQL---GALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKS 484
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + KD +W ++I LA N + EAL +F EM+ G + ++ITF+ VL+AC+
Sbjct: 485 LEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHG 544
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-- 238
LVE G F+SM + P +EHYGCV+DLLGRAGLL EA+E ++ +P E V+
Sbjct: 545 GLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPL 604
Query: 239 -GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALL AC+IH VD+ + ++L ++ + +L+NI+A ++RW A +R+ M E
Sbjct: 605 YGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 664
Query: 298 AGIRKIPAYSLIE 310
G++K+P SLIE
Sbjct: 665 LGVKKMPGCSLIE 677
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 37/274 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + ++++A LF+ M RD VSW +I+G+VR F +AI F+ M N +
Sbjct: 238 LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN-EK 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS LS+C L N L LG ++H Y+ R E+ + + AL+D+Y K GCL A
Sbjct: 297 PDEATVVSTLSACTALKN---LELGDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIA 352
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
+F M +K DV W AMI+
Sbjct: 353 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 412
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM+ + ++ ++ T V +LT CA+ +E G + H L + + + +
Sbjct: 413 DAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGTAL 471
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+++ + G + ++ E + + AS + G
Sbjct: 472 IEMYSKCGCVDKSLEIFYELEDKDTASWTSIICG 505
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 114/222 (51%), Gaps = 8/222 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F + + + ++ + + G + + +F+ + + + P+ TY
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDG--LWPDGFTYPF 202
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL + L + + G++V G+I++ + L ++ +LID+Y ++ +E A ++F M
Sbjct: 203 VLKAIGCLRD---VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMT 259
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGL 187
+D +WN MIS R ++A+ F EM+++G + +E T V+ L+AC + +ELG
Sbjct: 260 TRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGD 319
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E+ + + + +++ ++D+ + G L+ A+ M
Sbjct: 320 EIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM 359
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 203/309 (65%), Gaps = 4/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K GD+ +A +F+ + +DV +W+++I G+V+N EA+ +F+ + G N+ R
Sbjct: 221 LVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM-R 279
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T ++V+S+CA L G L G+ VH YI R + SV + +LID++ K G ++ A
Sbjct: 280 PNEVTILAVISACAQL---GDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA 336
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM KD+ +WN+M++ A + +EAL F M+ L+ +EITF+ VLTAC+ A
Sbjct: 337 KRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHA 396
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF+ + + V EHYGC+VDLL RAGLL+EA+EF+R MP +PD ++ G+
Sbjct: 397 GLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+++ ++L E R LL+L+P + G Y++LSNI+A + WN +R+ M E GI
Sbjct: 457 MLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGI 516
Query: 301 RKIPAYSLI 309
+K P S +
Sbjct: 517 QKTPGCSSV 525
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 25/293 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ SA LFE M R+ V WTS+I+G+++N C EA+ ++K M +
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM--EEDGFS 177
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +++S+CA L + G +G ++H +I ++ + +G+AL+++Y K G L+ A
Sbjct: 178 PDEVTMATLVSACAELKDLG---VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACAR 179
+VF + KDV W+A+I N+R EAL +F E+ +R NE+T +AV++ACA+
Sbjct: 235 RQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQ 294
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G H + + + + ++D+ + G + AK SM ++ D
Sbjct: 295 LGDLETG-RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWN 352
Query: 240 ALLGACKIHGAVDLCHEVGRRLL---------ELQPKHCGRYVVLSNI-HAGL 282
+++ +HG +GR L +LQP VL+ HAGL
Sbjct: 353 SMVNGFALHG-------LGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGL 398
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 118/229 (51%), Gaps = 6/229 (2%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A +F + + DV++W S++ FV + A+ + M+ V P+ T+ S+L C
Sbjct: 31 AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNV-PDRFTFPSLLKGC 89
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
A L+ +GK +HG +++ + +++ T L+++Y G L+ A +F+ M ++
Sbjct: 90 ALLLE---FKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
W +MIS N EAL+++ +M+E G +E+T +++ACA + + +G++L HS
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL-HSH 205
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+ + ++ +V++ + G L A++ + + D AL+
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALI 253
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NGD+ A LF+ M +RD VSW +II G+ +NG + EA+ + M + +
Sbjct: 318 MISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESL- 376
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T+ LS+CA + L LGKQVHG ++R +G AL+ +Y K GC++ A
Sbjct: 377 -NRSTFCCALSACADI---AALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEA 432
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KD+ +WN M++ A + ++AL +F+ M G++ +EIT V VL+AC+
Sbjct: 433 YDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHT 492
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G E FHSM + + P +HY C++DLLGRAG L EA+ +R+MPFEPDA+ GA
Sbjct: 493 GLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGA 552
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG ++L + + +++P + G YV+LSN++A RW + +R M + G+
Sbjct: 553 LLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGV 612
Query: 301 RKIPAYSLIE 310
+K P YS +E
Sbjct: 613 QKTPGYSWVE 622
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 45/270 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY +N + A +LF++M ++DVVSW ++++G+VR+G EA VF M
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM------PH 154
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVH----------------GYILRNEI------- 97
N ++ +L A V G L +++ GY+ RN +
Sbjct: 155 KNSISWNGLL---AAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLF 211
Query: 98 ----VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
V + +I Y + G L +A R+F+ ++DV TW AM+ + + EA
Sbjct: 212 DQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARR 271
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+FDEM +K E+++ ++ A+ + +++G ELF M P + + ++
Sbjct: 272 VFDEMPQK----REMSYNVMIAGYAQYKRMDMGRELFEEM-----PFPNIGSWNIMISGY 322
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G L++A+ MP S + G
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAG 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 54/312 (17%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP--NEATYVSVLSSCAGLVNEGGLY 83
V T I+ +RNG A+CVF M P N +Y +++S G +
Sbjct: 33 TVKCTKAISTHMRNGHCDLALCVFDAM--------PLRNSVSYNAMIS---GYLRNAKFS 81
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
L + + + ++ F ++ Y + L A +F SM KDV +WNAM+S
Sbjct: 82 LARDLFDKMPHKDL----FSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYV 137
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS----------- 192
+ EA +FD M K N I++ +L A R+ +E LF S
Sbjct: 138 RSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNC 193
Query: 193 ---------MLGK----FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
MLG F+ +P+ + + ++ + G LS+A+ P D
Sbjct: 194 LMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVR-DVFT 252
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
A++ A G +D RR+ + P+ R + + + AG ++ R R+ E
Sbjct: 253 WTAMVYAYVQDGMLD----EARRVFDEMPQK--REMSYNVMIAGYAQYKRMDMGRELFEE 306
Query: 298 AGIRKIPAYSLI 309
I +++++
Sbjct: 307 MPFPNIGSWNIM 318
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+ SA +F++M K+D V+W ++I G+ +NG EAI +F++M ++
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM--RMSSTA 326
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +LS+CA + G L LGKQV Y V++GTAL+D+Y K G L+ A
Sbjct: 327 PDQITLIGILSACASI---GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNA 383
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVF M K+ +WNAMIS+LA + + +EAL +F M +G + N+ITFV VL+AC
Sbjct: 384 FRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACV 443
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G LFH M F +VP +EHY C+VDL RAG L EA +F+ +MP +PD +L
Sbjct: 444 HAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVIL 503
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+ +D+ V + LLEL+P + G YV+ S ++A L RW+ + +R M +
Sbjct: 504 GALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQK 563
Query: 299 GIRKIPAYSLIE 310
G+ K P S I+
Sbjct: 564 GVSKTPGCSWID 575
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 155/289 (53%), Gaps = 16/289 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G M A +F+ + ++D+VSW S+I+G+ + GEA+ +F+ MM +
Sbjct: 168 LITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG--FQ 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + VSVL +C L G L LG V +++ N++ L+ FMG+ALI +YGK G L A
Sbjct: 226 PNEMSLVSVLGACGEL---GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM KD TWNAMI+ A N +EA+ +F +M+ ++IT + +L+ACA
Sbjct: 283 RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342
Query: 181 QLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG +E++ S G + V + +VD+ + G L A MP + + S
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGT---ALVDMYAKCGSLDNAFRVFYGMPKKNEVS-W 398
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE----LQPKHCGRYVVLSN-IHAGL 282
A++ A HG + + ++ + P VLS +HAGL
Sbjct: 399 NAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGL 447
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 37/281 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D A + F N+L S+ +I G F + M + L +PN TY +
Sbjct: 75 DFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGL-KPNNLTYPFL 133
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+C+ L+ + G+ H ++R + + +LI +Y + G + A +VF +
Sbjct: 134 FIACSNLL---AVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG--L 187
KD+ +WN+MIS + EA+ +F EM E G + NE++ V+VL AC ++LG +
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250
Query: 188 ELF----HSMLGKFEVVPIMEHYGCVVDLL------------------------GRAGLL 219
E F L F ++ YG DL+ + G+
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 220 SEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEV 257
EA + + M PD L +L AC GA+DL +V
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV 351
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/315 (46%), Positives = 196/315 (62%), Gaps = 12/315 (3%)
Query: 4 GYVKNGDMDS---AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
GYVK GDM A LF M ++D+VSW+++I+G+ +NG + EA+ +F M N N +R
Sbjct: 204 GYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM--NANGMR 261
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI----DLYGKVGC 116
+E VSVLS+CA L + GK +HG ++R I V + ALI D+Y K GC
Sbjct: 262 LDEVVVVSVLSACAHL---SIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGC 318
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A+ VF M K V +WNA+I LA N + +L MF EMK G+ NEITF+ VL A
Sbjct: 319 VENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGA 378
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C LV+ G F SM+ K + P ++HYGC+VDLLGRAGLL+EA++ + SMP PD +
Sbjct: 379 CRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVA 438
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
GALLGACK HG ++ VGR+L+ELQP H G +V+LSNI A W ++R M
Sbjct: 439 TWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMK 498
Query: 297 EAGIRKIPAYSLIEA 311
+ G+ K P SLIEA
Sbjct: 499 QQGVVKTPGCSLIEA 513
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+ SA +F++M K+D V+W ++I G+ +NG EAI +F++M ++
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM--RMSSTA 326
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +LS+CA + G L LGKQV Y V++GTAL+D+Y K G L+ A
Sbjct: 327 PDQITLIGILSACASI---GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNA 383
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVF M K+ +WNAMIS+LA + + +EAL +F M +G + N+ITFV VL+AC
Sbjct: 384 FRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACV 443
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G LFH M F +VP +EHY C+VDL RAG L EA +F+ +MP +PD +L
Sbjct: 444 HAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVIL 503
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+ +D+ V + LLEL+P + G YV+ S ++A L RW+ + +R M +
Sbjct: 504 GALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQK 563
Query: 299 GIRKIPAYSLIE 310
G+ K P S I+
Sbjct: 564 GVSKTPGCSWID 575
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 155/289 (53%), Gaps = 16/289 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G M A +F+ + ++D+VSW S+I+G+ + GEA+ +F+ MM +
Sbjct: 168 LITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG--FQ 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + VSVL +C L G L LG V +++ N++ L+ FMG+ALI +YGK G L A
Sbjct: 226 PNEMSLVSVLGACGEL---GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM KD TWNAMI+ A N +EA+ +F +M+ ++IT + +L+ACA
Sbjct: 283 RRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342
Query: 181 QLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG +E++ S G + V + +VD+ + G L A MP + + S
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGT---ALVDMYAKCGSLDNAFRVFYGMPNKNEVS-W 398
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE----LQPKHCGRYVVLSN-IHAGL 282
A++ A HG + + ++ + P VLS +HAGL
Sbjct: 399 NAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGL 447
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 37/281 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D A + F N+L S+ +I G F + M + L +PN TY +
Sbjct: 75 DFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGL-KPNNLTYPFL 133
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+C+ L+ + G+ H ++R + + +LI +Y + G + A +VF +
Sbjct: 134 FIACSNLL---AVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQ 190
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG--L 187
KD+ +WN+MIS + EA+ +F EM E G + NE++ V+VL AC ++LG +
Sbjct: 191 KDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250
Query: 188 ELF----HSMLGKFEVVPIMEHYGCVVDLL------------------------GRAGLL 219
E F L F ++ YG DL+ + G+
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310
Query: 220 SEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEV 257
EA + + M PD L +L AC GA+DL +V
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV 351
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K D++SA +F+ M ++VV+W ++I+G G + EA+ F+ M V+
Sbjct: 254 LLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKG--VK 311
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V VL+SCA L G L +GK VH Y+ RN I+ F+G AL+D+Y K G ++ A
Sbjct: 312 PDEVTLVGVLNSCANL---GVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEA 368
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+SM +DV ++ AMI LA + A +F EM G+ NE+TF+ +L AC+
Sbjct: 369 FRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHG 428
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F M K+++ P EHYGC++DLLGRAGL+ EA+E + M PD GA
Sbjct: 429 GLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGA 488
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG VD+ V ++L EL P G Y++++N+++ + RW A +RK M +
Sbjct: 489 LLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKM 548
Query: 301 RKIPAYSLIE 310
RK P SLIE
Sbjct: 549 RKTPGCSLIE 558
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + +F+ RD+VSWT++I F + G + A+ F M ++ L R + T V
Sbjct: 160 GSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMC-DLRL-RADGRTLVV 217
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--SVFMGTALIDLYGKVGCLERAIRVFKS 126
VLS+C+ L G L LG++VH YI R+ I + VF+G AL+D+Y K L A +VF
Sbjct: 218 VLSACSNL---GDLNLGQKVHSYI-RHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDE 273
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M +K+V TWNAMIS LA R +EAL F M++KG++ +E+T V VL +CA ++E+G
Sbjct: 274 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 333
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ H+ + + ++ ++D+ + G + EA SM D A++
Sbjct: 334 -KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMK-RRDVYSYTAMIFGLA 391
Query: 247 IHGAVDLCHEV 257
+HG + +V
Sbjct: 392 LHGEANWAFQV 402
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 81 GLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G+ G+Q+H ++ +V +V++ L+ LY G + +VF +D+ +W +I
Sbjct: 125 GIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLI 184
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
+ A+ F EM + LRA+ T V VL+AC+ + LG ++ HS + +
Sbjct: 185 QAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKV-HSYIRHY 241
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 192/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G+++SA +F+ M RDV++W ++I+G+ +NG EAI +F M + V
Sbjct: 265 LISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGM--KEDCVT 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T +VLS+CA + G L LGKQ+ Y + +F+ TALID+Y K G L+ A
Sbjct: 323 ANKITLTAVLSACATI---GALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNA 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVFK M K+ +WNAMIS+LA++ + KEAL +F M ++G R N+ITFV +L+AC
Sbjct: 380 QRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACV 439
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G LF M F +VP +EHY C+VDLL RAG L EA + +R MP +PD L
Sbjct: 440 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTL 499
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+ VD+ V R +LE+ P + G Y++ S I+A L W + +R M +
Sbjct: 500 GALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQK 559
Query: 299 GIRKIPAYSLIE 310
GI K P S IE
Sbjct: 560 GITKTPGCSWIE 571
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + SA +F+ + RD VSW S+I G+ + GC EA+ VF+ M G +
Sbjct: 163 LITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREM-GRRDGFE 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VS+L +C L G L LG+ V G+++ + L+ ++G+ALI +Y K G LE A
Sbjct: 222 PDEMSLVSLLGACGEL---GDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESA 278
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV TWNA+IS A N EA+++F MKE + AN+IT AVL+ACA
Sbjct: 279 RRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATI 338
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG ++ + S G + + ++D+ ++G L A+ + MP + +AS
Sbjct: 339 GALDLGKQIDEYASQRGFQHDIFVAT---ALIDMYAKSGSLDNAQRVFKDMPQKNEAS-W 394
Query: 239 GALLGACKIHG 249
A++ A HG
Sbjct: 395 NAMISALAAHG 405
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104
A+ +F MM +++L P+ T+ SCA L + L H + + +
Sbjct: 106 ALSLFHRMM-SLSLT-PDNFTFPFFFLSCANLAS---LSHACAAHSLLFKLALHSDPHTA 160
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGL 163
+LI Y + G + A +VF + +D +WN+MI+ A +EA+ +F EM + G
Sbjct: 161 HSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGF 220
Query: 164 RANEITFVAVLTACARAQLVELG 186
+E++ V++L AC +ELG
Sbjct: 221 EPDEMSLVSLLGACGELGDLELG 243
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+M+ A +F+ ML++++VSW+S+I G+ NG EA+ +F M+ ++
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG--LK 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V VL SCA L G L LG I NE + + +GTALID+Y K G ++RA
Sbjct: 308 PDCYAMVGVLCSCARL---GALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRA 364
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M KD WNA IS LA + K+AL +F +M++ G++ + TFV +L AC A
Sbjct: 365 WEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHA 424
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F+SM F + P +EHYGC+VDLLGRAG L EA + ++SMP E +A V GA
Sbjct: 425 GLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGA 484
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C++H L V ++L+ L+P H G YV+LSNI+A +W A +R M E G+
Sbjct: 485 LLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGV 544
Query: 301 RKIPAYSLIE 310
+KIP YS IE
Sbjct: 545 KKIPGYSWIE 554
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 139/253 (54%), Gaps = 11/253 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+I+ Y K G +D+A +F+++ ++ SWT+ I+G+V G EAI +F+ + MG
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMG---- 204
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+RP+ + V VLS+C G L G+ + YI N +V +VF+ TAL+D YGK G +E
Sbjct: 205 LRPDSFSLVEVLSACK---RTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNME 261
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
RA VF M+ K++ +W++MI ASN KEAL +F +M +GL+ + V VL +CA
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA 321
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
R +ELG + +++ E + ++D+ + G + A E R M + D V
Sbjct: 322 RLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVW 379
Query: 239 GALLGACKIHGAV 251
A + + G V
Sbjct: 380 NAAISGLAMSGHV 392
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 6/221 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G+ + + + + + ++ + ++I G V N CF E+I ++ +M + P+ T+
Sbjct: 56 GNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEG--LSPDSFTFPF 113
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +CA +++ LG ++H +++ F+ +LI+LY K G ++ A +VF +
Sbjct: 114 VLKACARVLDS---ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIP 170
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
K+ +W A IS + +EA+ MF + E GLR + + V VL+AC R + G E
Sbjct: 171 DKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG-E 229
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + +V + +VD G+ G + A+ M
Sbjct: 230 WIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGM 270
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 10/196 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K +H +LR + ++ ++ G + R+ ++ +N MI L N
Sbjct: 27 KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+E++ ++ M+++GL + TF VL ACAR ELG+++ HS++ K
Sbjct: 87 DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKM-HSLVVKAGCEADAFV 145
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262
+++L + G + A + +P F + + +G K A+D+ RRLL
Sbjct: 146 KISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMF----RRLL 201
Query: 263 E--LQPKHCGRYVVLS 276
E L+P VLS
Sbjct: 202 EMGLRPDSFSLVEVLS 217
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 201/311 (64%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
MI+ Y + G + A+ LF+++ +D V WT++I+G VRN +A+ +F+ M M NV+
Sbjct: 195 MINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVS-- 252
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T V VLS+C+ L G L LG+ VH ++ + LS F+G ALI++Y + G +
Sbjct: 253 -ANEFTAVCVLSACSDL---GALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINE 308
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF+ M KDV ++N MIS LA + EA+ F +M +G R N++T VA+L AC+
Sbjct: 309 ARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSH 368
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+++GLE+F+SM F V P +EHYGC+VDLLGR G L EA F+ ++P EPD +LG
Sbjct: 369 GGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLG 428
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL ACKIHG ++L ++ +RL E + G YV+LSN++A +W +T++R++M ++G
Sbjct: 429 TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSG 488
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 489 IEKEPGCSTIE 499
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +SVL SC + + +H I+R F+ LI + + ++ A VF
Sbjct: 31 TLISVLRSCKNIAHV------PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVF 84
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ +V + AMI S+ R + + ++ M + + +VL AC E
Sbjct: 85 SYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE 144
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ++ G V + ++++ G++G L AK+ MP
Sbjct: 145 IHAQVLKLGFGSSRSVGLK-----MMEIYGKSGELVNAKKMFDEMP 185
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G D A+ +F M R++VSW ++I G+V+ + EA+ VF+ M+ + +
Sbjct: 246 LVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI--IEGIE 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN++T S L++CA L G L G+ +H Y+ R+++ L+ +GTAL+D+Y K GC++ A
Sbjct: 304 PNQSTVTSALTACAQL---GSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ + KDV W AMI+ LA +L +F +M ++ N +TF+ VL+ACA
Sbjct: 361 LLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLELF M+ + + P ++HYGC+VDLLGRAG L EA +F+ SMP EP V GA
Sbjct: 421 GLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L C IH A +L +G L++LQP H GRY++L+N+++ ++W A ++R+ M G+
Sbjct: 481 LFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGV 540
Query: 301 RKIPAYSLIE 310
K PA S IE
Sbjct: 541 DKSPACSWIE 550
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 7/231 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + G +D + LF K+DVVSWT++ING +RNG EA+ F M + V
Sbjct: 144 LVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSG--VE 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
+E T VSVL + A L + ++ G+ VHG Y+ ++ V++G+AL+D+Y K G +
Sbjct: 202 VDEVTVVSVLCAAAMLRD---VWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A++VF M +++ +W A+I+ +R KEAL +F EM +G+ N+ T + LTACA+
Sbjct: 259 AVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G L H + + ++ + +VD+ + G + EA +P
Sbjct: 319 LGSLDQGRWL-HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 6/221 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ +LLF+ + + W +I+ F + + + V + + N ++ P+ T+ +
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIVRSFSASSQ-PQMVLVAYSRLRNHGVI-PDRHTFPLL 110
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L + + L NE Q + +I++ + F+ +L+ + G ++ + R+F
Sbjct: 111 LKAFSKLRNENPF----QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAK 166
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV +W A+I+ N R EAL F EM+ G+ +E+T V+VL A A + V G +
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWV 226
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ + +VD+ + G +A + MP
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMP 267
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG +++A+ LF M +D VSW+++I+G V+N A+ VF NM VR
Sbjct: 338 MIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNM--RAQGVR 395
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L L GK VH Y+ +N+ +++ +GT+LID+Y K G LE A
Sbjct: 396 PDEVTIVSVISACTNL---SALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAA 452
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACAR 179
+ VF M K WNA+I LA N ++L +F EM+ NEITF VL+AC
Sbjct: 453 MDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRH 512
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G F M K+++VP + HYGC+VDLLGRAG + EA++ + SMP PD G
Sbjct: 513 AGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWG 572
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG ++ VGR+L+ L P+H G +LSNI+A W DLR +M +
Sbjct: 573 ALLGACWKHGENEVGERVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRH 632
Query: 300 IRKIPAYSLIE 310
+ K+ YS++E
Sbjct: 633 VPKVSGYSVVE 643
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 154/340 (45%), Gaps = 71/340 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + + G ++ A +F+ RD+ +WT++I+ F RN F EA+ +F M + V
Sbjct: 206 MVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPV- 264
Query: 61 PNEATYVSVLSSCA------------GLVNEGGL--YLGKQ---VHGYILRNEIV----- 98
+EA VSV+++CA GLV GL L Q +H Y ++V
Sbjct: 265 -DEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRL 323
Query: 99 ------LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
L F ++I Y K G +E A+ +F +M KD +W+ MIS N++ AL
Sbjct: 324 FDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHAL 383
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELG---------------LELFHSMLGKF 197
+FD M+ +G+R +E+T V+V++AC +E G L L S++ +
Sbjct: 384 TVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMY 443
Query: 198 ----------EVVPIMEHYG-----CVVDLLGRAGLLSEAKEFMRSMPFE----PDASVL 238
+V IME G V+ L GL++++ E M P+
Sbjct: 444 MKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITF 503
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
+L AC+ G V E GR +L +H +Y ++ NI
Sbjct: 504 TGVLSACRHAGLV----EEGRHFFKLM-QH--KYQIVPNI 536
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 52/197 (26%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D VSW +I+ +V G +A+ VF M P
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVGVFARM--------PK---------------------- 197
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
RN +S +++ L+G+ G +E A VF +D+ TW AMIS
Sbjct: 198 ---------RNATAVS-----SMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFER 243
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK------FE 198
N EAL MF M+ + +E V+V+ ACA+++++ G EL H ++ +
Sbjct: 244 NDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNG-ELCHGLVIRAGLCSLLN 302
Query: 199 VVPIMEH-YGCVVDLLG 214
+ ++ H Y C +D++
Sbjct: 303 IQNVLIHMYSCCLDVVA 319
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + ++CA + G+QV + +R+ +++ AL+ +Y GCL A
Sbjct: 101 PDTYTHPILAAACAA---RRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + + D +WN ++++ +A+ +F M ++ N ++++ R
Sbjct: 158 RRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKR----NATAVSSMVSLFGRR 213
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASV 237
+VE +F + E I + ++ R + +EA MR + D ++
Sbjct: 214 GMVEEARGVF----DEAECRDIFT-WTAMISCFERNDMFAEALHMFSCMRREMWPVDEAL 268
Query: 238 LGALLGACKIHGAV---DLCH 255
+ +++ AC + +LCH
Sbjct: 269 MVSVVAACAQSEVIRNGELCH 289
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 196/303 (64%), Gaps = 6/303 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y G + A LF+ M R+ +W+S++ G V++ EA+ VF +M+ V
Sbjct: 181 MLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARG--VV 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
PNE+ VSV+S+CA L + L G VH Y+ R +SV + TA++D+YGK GC+
Sbjct: 239 PNESILVSVISACAQLRS---LEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHN 295
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AIRVF +M ++++ +WN+MI+ LA N RE +AL +F +M+ G++ N+ITF+ +L AC+
Sbjct: 296 AIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSH 355
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ G LF+ M+ F + P+ EHYG +VDLLGRAGL+ EA +F+++MP EP + G
Sbjct: 356 SGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWG 415
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL GAC IHG V+L E+ ++L+EL+P+H RY++LSNI+ RW +R+ + E
Sbjct: 416 ALAGACNIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERK 475
Query: 300 IRK 302
+ K
Sbjct: 476 VSK 478
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 54/235 (22%)
Query: 2 IDGYVKNGDMDSAILLFENMLKR--DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ Y D+ SA LF + K DVV+WT+++ G R G A F + M N+V
Sbjct: 118 VSAYFTAADVASAERLFSDTSKDVADVVTWTTMVAGHARAGDVERARWFF-DAMPERNVV 176
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
N A++ Y G L
Sbjct: 177 SWN-------------------------------------------AMLGAYASAGMLSE 193
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F M ++ TW++M++ L + +EAL +F +M +G+ NE V+V++ACA+
Sbjct: 194 ARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQ 253
Query: 180 AQLVELGLELF----HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ +E G+ + + G V+ +VD+ G+ G + A +MP
Sbjct: 254 LRSLEHGVWVHAYVKRELHGSMSVILAT----AIVDMYGKCGCIHNAIRVFAAMP 304
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 193/319 (60%), Gaps = 14/319 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------- 53
MI GY + G + +A+LLFE M +RDV SW ++I G+ +NG F EA+ +F+ M+
Sbjct: 228 MISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAW 287
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
G N RPN+ T V LS+C + G L LGK +HGY+ RN + L F+ AL+D+YGK
Sbjct: 288 GQGN--RPNQVTAVCSLSACG---HTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGK 342
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE--KGLRANEITFV 171
GCL+ A RVF + + + +WN+MI+ LA + + + A+ +F+EM G++ +E+TF+
Sbjct: 343 CGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFI 402
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
+L AC LVE G F M + + P +EHYGC+VDLLGRAG EA E +R M
Sbjct: 403 GLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRI 462
Query: 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291
EPD + G+LL CKIHG DL ++L+++ P + G ++L+NI+ L +W+ +
Sbjct: 463 EPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKV 522
Query: 292 RKAMVEAGIRKIPAYSLIE 310
RK + E K P S IE
Sbjct: 523 RKVLKEQNAHKTPGCSWIE 541
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 55/284 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++ A +F+++ +V +T++I + + A+ +++NM+ PN Y V
Sbjct: 103 NLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRR-RRPWPNHFIYPHV 161
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVFKSMV 128
L SC +V G + VH +LR+ + TAL+D Y + +E A +F M
Sbjct: 162 LKSCTQVVGPGS---ARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMT 218
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEK--------------------------- 161
++V +W AMIS + A+++F+EM E+
Sbjct: 219 ERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRR 278
Query: 162 -----------GLRANEITFVAVLTACARAQLVELGLEL----FHSMLGKFEVVPIMEHY 206
G R N++T V L+AC ++ LG + + + LG V
Sbjct: 279 MIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVS----- 333
Query: 207 GCVVDLLGRAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHG 249
+VD+ G+ G L EA+ F R++ E + +++ +HG
Sbjct: 334 NALVDMYGKCGCLKEARRVFDRTL--ERSLTSWNSMINCLALHG 375
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 199/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G + A +F+ + ++D+VSWTSII+G V+ C EA+ +F++M + +
Sbjct: 173 LMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSG--IE 230
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L G+ VH +I R I + +GTA++D+Y K GC+E +
Sbjct: 231 PDGIILTSVLSACARL---GALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMS 287
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F M K+V TWNA+++ LA + + L +F+EM G+R NE+TF+A+LTAC
Sbjct: 288 MQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHC 347
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G + F+ M G+ + + P +EHYGC+VDLL RA LL EA E ++MP PD ++G
Sbjct: 348 GLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMG 407
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL ACK +G +L E+ R +EL G YV+LSNIHA +RW+ T +R+ M E G
Sbjct: 408 ALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKG 467
Query: 300 IRKIPAYSLIE 310
I+K P ++IE
Sbjct: 468 IKKPPGSTVIE 478
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 10/233 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ ML RDVVSWT +I+G+VR G F EA+ +F M V PN AT+VSVL +C
Sbjct: 91 VFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD-----VEPNAATFVSVLVACG-- 143
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+G L +GK +HG ++ + + + AL+D+Y K GCL A +VF + KD+ +W
Sbjct: 144 -RKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWT 202
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
++IS L + KEAL +F +M+ G+ + I +VL+ACAR ++ G H + +
Sbjct: 203 SIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYG-RWVHEHIDR 261
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ ++ +VD+ + G + + + MP + + ALL +HG
Sbjct: 262 KAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK-NVLTWNALLNGLAMHG 313
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 49/287 (17%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
+ ++++G+ A V++ ++ + L P+ T+ +VL SCA V G+ G+Q
Sbjct: 1 PFNALVSGYAIGDRPKTAFLVYRRIVKDGFL--PDMFTFPAVLKSCAKFV---GIGEGRQ 55
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VHG I++ V ++++ +L+ Y A RVF M+++DV +W +IS
Sbjct: 56 VHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGL 115
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL----FHSMLG-KFEVV-P 201
EA+ +F M + N TFV+VL AC R + +G + F S G EV
Sbjct: 116 FDEAVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNA 172
Query: 202 IMEHY---GC------VVDLLGRAGLLS---------------EAKEF---MRSMPFEPD 234
+M+ Y GC V D L ++S EA E M+S EPD
Sbjct: 173 LMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPD 232
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281
+L ++L AC GA+D GR + E H R + +I G
Sbjct: 233 GIILTSVLSACARLGALDY----GRWVHE----HIDRKAIKWDIQIG 271
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NG + A LF+ M +RD VSW +II+G+ +NG + EA+ +F M +
Sbjct: 331 MITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE--S 388
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T+ LS+CA + L LGKQVHG +++ F+G AL+ +Y K G + A
Sbjct: 389 SNRSTFSCALSTCADIA---ALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEA 445
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KDV +WN MI+ A + ++ALV+F+ MK+ G++ +EIT V VL+AC+ +
Sbjct: 446 NDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHS 505
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G E F+SM + V P +HY C++DLLGRAG L EA+ MR+MPF+P A+ GA
Sbjct: 506 GLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGA 565
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + + +++P++ G YV+LSN++A RW +R M EAG+
Sbjct: 566 LLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGV 625
Query: 301 RKIPAYSLIE 310
+K+ YS +E
Sbjct: 626 QKVTGYSWVE 635
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 39/254 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV+N + A LF+ M K+DVVSW ++++G+ +NG EA VF N M + N +
Sbjct: 114 MLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF-NKMPHRNSIS 172
Query: 61 PNE--ATYVSVLSSCAGLVNEGGLYLGKQVH-----------GYILRNEI---------- 97
N A YV G + E Q + GY+ RN +
Sbjct: 173 WNGLLAAYVH-----NGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 98 -VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
V V +I Y +VG L +A R+F I+DV TW AM+S N EA FD
Sbjct: 228 PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
EM K NEI++ A+L + + + + ELF +M + + + ++ G+
Sbjct: 288 EMPVK----NEISYNAMLAGYVQYKKMVIAGELFEAMPCR-----NISSWNTMITGYGQN 338
Query: 217 GLLSEAKEFMRSMP 230
G +++A++ MP
Sbjct: 339 GGIAQARKLFDMMP 352
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 108/285 (37%), Gaps = 87/285 (30%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD+ A LF RDV +WT++++G+V+NG EA F M
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM------PV 291
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE +Y ++L+ GY+ ++V+ A
Sbjct: 292 KNEISYNAMLA------------------GYVQYKKMVI--------------------A 313
Query: 121 IRVFKSMVIKDVCTWNAM-------------------------------ISSLASNSREK 149
+F++M +++ +WN M IS A N +
Sbjct: 314 GELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYE 373
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL MF EMK G +N TF L+ CA +ELG ++ +VV GC
Sbjct: 374 EALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHG------QVVKAGFETGCF 427
Query: 210 VD--LLG---RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
V LLG + G EA + + E D ++ HG
Sbjct: 428 VGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHG 471
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 109/253 (43%), Gaps = 27/253 (10%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I +++NG DSA+ +F +M +R VS+ ++I+G++RN F A +F M
Sbjct: 53 ISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM--------- 103
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
E S G V L ++ + + ++V A++ Y + G ++ A
Sbjct: 104 PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV----SWNAMLSGYAQNGFVDEAR 159
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M ++ +WN ++++ N R KEA +F+ L I++ ++ +
Sbjct: 160 EVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL----ISWNCLMGGYVKRN 215
Query: 182 LVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ +LF M P+ + + ++ + G LS+AK P D
Sbjct: 216 MLGDARQLFDRM-------PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIR-DVFTWT 267
Query: 240 ALLGACKIHGAVD 252
A++ +G VD
Sbjct: 268 AMVSGYVQNGMVD 280
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 22/206 (10%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D+V+W I+ +RNG A+ VF +M R + +Y +++S G + L
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSM------PRRSSVSYNAMIS---GYLRNAKFSL 95
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ + + ++ F ++ Y + L A ++F M KDV +WNAM+S A
Sbjct: 96 ARDLFDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQ 151
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EA +F++M + N I++ +L A ++ LF S +E++
Sbjct: 152 NGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQ-SNWELIS--- 203
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ C++ + +L +A++ MP
Sbjct: 204 -WNCLMGGYVKRNMLGDARQLFDRMP 228
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A LF+ ++++ SW +ING V + + EA+ +F+ M ++
Sbjct: 228 LMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM--QTKGIK 285
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T S+L +C L G L LGK +H YI + I + V +GTAL+D+Y K G +E A
Sbjct: 286 GDKVTMASLLLACTHL---GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETA 342
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I+VF M KDV TW A+I LA + + AL FDEM KG++ + ITFV VL AC+ A
Sbjct: 343 IQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHA 402
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F+SM + + P +EHYG +VD+LGRAG ++EA+E ++SMP PD VLG
Sbjct: 403 GFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGG 462
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++ ++LLE+ P H G YV+LSNI+ ++W A R+ M E G+
Sbjct: 463 LLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGM 522
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 523 RKPPGCSQIE 532
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 6/242 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y G + SA +F+ M + VVSW ++I + EA+ +F MM + N V+
Sbjct: 126 LMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSEN-VK 184
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V+VL++CA + L + K++H YI + V + T L+D+Y K GC++ A
Sbjct: 185 PNEVTLVNVLTACARARD---LAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F K++ +WN MI+ +S +EAL++F EM+ KG++ +++T ++L AC
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ELG + H+ + K + + +VD+ + G + A + MP E D A
Sbjct: 302 GALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTA 359
Query: 241 LL 242
L+
Sbjct: 360 LI 361
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++G + A L+F + + SII G EA+ ++ MM V + P+ T+
Sbjct: 34 ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMM--VQGLIPDRYTF 91
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
S+ SC GKQ+H + + + L+++Y GCL A +VF
Sbjct: 92 PSLFKSCRNSSE------GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDK 145
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDE-MKEKGLRANEITFVAVLTACARAQ 181
M K V +W MI A + EA+ +FD MK + ++ NE+T V VLTACARA+
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARAR 201
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A +F+ M R+VV+WT++I G+V++ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ GT LIDLY K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ ++A +F M + NE+TF+AVL+ACA
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM G+F + +HY C+VDL GR GLL EAK + MP EP V GA
Sbjct: 421 GLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C +H +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 541 VKSPGFSWIE 550
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G D A LF+ +DVV+WT++I+GFVRNG EA+ F M V
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG--VA 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T VSVL + AG V + + G+ VHG Y+ + VF+G++L+D+YGK C +
Sbjct: 202 ANEMTVVSVLKA-AGKVED--VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M ++V TW A+I+ + + +++F+EM + + NE T +VL+ACA
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ G + H + K + ++DL + G L EA
Sbjct: 319 VGALHRGRRV-HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 4/202 (1%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W S+I F + N V P+ T+ +L + L + Q
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPF----QF 125
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H +I++ + F+ +LI Y G + A R+F KDV TW AMI N
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+V F EMK+ G+ ANE+T V+VL A + + V G + L V +
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSS 245
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+VD+ G+ +A++ MP
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMP 267
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G D A +F+ M R+VV+WT++I G+V+ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ +GT LID Y K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ A+ +F M + NE+TF+ VL+ACA
Sbjct: 361 ILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM +F + P +HY C+VDL GR GLL EAK + MP EP +V GA
Sbjct: 421 GLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C IH +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 541 VKSPGCSWIE 550
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 15/288 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G + +F+ +DVVSWT++I+GFVRN EA+ F M + V
Sbjct: 144 LISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEM--KRSGVA 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
NE T VSVL + + + G+ +HG+ L + VF+G++L+D+YGK GC +
Sbjct: 202 ANEMTVVSVLKATRKAED---VRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M ++V TW A+I+ ++ + +F+EM + + NE T +VL+ACA
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G + H + K + ++D + G L EA + E +
Sbjct: 319 VGALHRGRRV-HCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLR-EKNVYTWT 376
Query: 240 ALLGACKIH----GAVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL 282
A++ H GAVDL H + + P VVLS H GL
Sbjct: 377 AMINGFAAHGYAIGAVDLFHTMLSS--HVSPNEVTFIVVLSACAHGGL 422
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 4/202 (1%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W S++ F + N V P+ T+ +L + L + Q
Sbjct: 70 WDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDANPF----QF 125
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H +IL+ +F+ +LI Y G E RVF KDV +W AMI N
Sbjct: 126 HAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSS 185
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+ F EMK G+ ANE+T V+VL A +A+ V G + L V +
Sbjct: 186 LEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSS 245
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+VD+ G+ G +A++ MP
Sbjct: 246 LVDMYGKCGCYDDAQKVFDEMP 267
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G + G +D A LF+ M +RD VSWT++I+G+V F EA+ +F+ M + V
Sbjct: 195 LLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM--QYSNVS 252
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++CA L G L +G+ V Y+ R I + F+G ALID+Y K G +ERA
Sbjct: 253 ADEFTMVSVITACAQL---GALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERA 309
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M +D TW A+I LA N E+EA+ MF M +E+TF+ VLTAC A
Sbjct: 310 LDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHA 369
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F SM+ + + P + HYGC++DLLGRAG ++EA + + MP P++++ G
Sbjct: 370 GLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGT 429
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG ++ V RLLEL P++ Y++LSNI+A RW LR A++E GI
Sbjct: 430 LLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGI 489
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 490 KKEPGCSLIE 499
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
V+W ++I+G R G FGE+ F +M P TYVSVLS+C + + LG
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAG--AAPTPVTYVSVLSACGKGTRD--VLLGM 143
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS-- 144
QVHG ++ + ++ + + AL+D+Y + + A +VF M ++ V +W +++S LA
Sbjct: 144 QVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLG 203
Query: 145 -----------------------------NSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+R +EAL MF EM+ + A+E T V+V+T
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263
Query: 176 ACARAQLVELG 186
ACA+ +E+G
Sbjct: 264 ACAQLGALEMG 274
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 200/312 (64%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G +D A +F+ M +++ SW +++ +V+ F EA +F M N V
Sbjct: 194 LISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVL 253
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ ++LS+C GL G L GK +H YI RN I L + TA++D+Y K GCLE+A
Sbjct: 254 -DKFVATTMLSACTGL---GALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKA 309
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++VF S+ + + + +WN MI LA + + A+ +F EM+ + + ++ITF+ +LTACA
Sbjct: 310 LQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACA 369
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LVE G F M+ + + P MEH+GC+VDLLGRAG++ EA++ + MP PD +VL
Sbjct: 370 HSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVL 429
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G LLGACK H ++L E+GRR++EL+P + GRYV+L+N++A +W A +RK M +
Sbjct: 430 GTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDR 489
Query: 299 GIRKIPAYSLIE 310
G++K P +S+IE
Sbjct: 490 GVKKAPGFSMIE 501
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 48/286 (16%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCF--GEAICVFKNMMGNVNLVRPNEATYVSVLS 71
A+ LF+++ + D + +II GF+ + + ++ +M+ N V PN T+ S+L
Sbjct: 76 ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNS--VLPNNFTFPSLLI 133
Query: 72 SCAGLVNEGGLYLGKQVHGYILR-----NEIVLSVFMG---------------------- 104
+C + + G Q+H ++ + + + L+ +
Sbjct: 134 ACRKIQH------GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPD 187
Query: 105 ----TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK- 159
T+LI Y K G ++ A +F+ M K+ +WNAM+++ +R EA +FD MK
Sbjct: 188 SVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKA 247
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
E ++ +L+AC ++ G + H + + + + +VD+ + G L
Sbjct: 248 ENNNVLDKFVATTMLSACTGLGALDQG-KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCL 306
Query: 220 SEAKEFMRSMPFEPD-ASVLGALLGACKIHG----AVDLCHEVGRR 260
+A + S+P S ++G +HG A+ L E+ R+
Sbjct: 307 EKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQ 352
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + A LF+ M R+ VSW++++NG+V+ G EA+ +F M + VR
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM--QADGVR 340
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V VL++CA L G L GK VHGY+ N I ++VF+GTAL+D+Y K G ++ A
Sbjct: 341 PDDTVLVGVLAACAQL---GVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLA 397
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M K+V W MI LA + R EAL +F +M+ G++ ++I F+ L AC
Sbjct: 398 MEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHT 457
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ELF SM+ K+ + P +EHYGC+VDLL R GLL+EA+E + MP +PDA + GA
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGA 517
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ C+ H V+L V + +EL+P G YV+L NI+A R A ++R M E G+
Sbjct: 518 LMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGV 577
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 578 DKTPGCSTVE 587
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+LR + LI Y + G + A +F M ++ +W+AM++ +EA
Sbjct: 268 LLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA 327
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVV 210
L +F M+ G+R ++ V VL ACA+ ++E G + H L K + I G +V
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYL-KANNIRITVFLGTALV 385
Query: 211 DLLGRAGLLSEAKEFMRSM 229
D+ + G + A E + M
Sbjct: 386 DMYAKCGEMQLAMEVFKVM 404
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 199/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+I GY + G +D A +FE M +R+ VSW ++I +V++ EA +F M + NV L
Sbjct: 192 LITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL- 250
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
++ S+LS+C GL G L GK +HGYI ++ I L + T +ID+Y K GCLE+
Sbjct: 251 --DKFVAASMLSACTGL---GALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF + K + +WN MI LA + + + A+ +F EM+ + + + ITFV VL+ACA
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LVE G F M + P MEH+GC+VDLLGRAGLL EA++ + MP PDA VLG
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 425
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL+GAC+IHG +L ++G++++EL+P + GRYV+L+N++A RW +RK M + G
Sbjct: 426 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 485
Query: 300 IRKIPAYSLIEA 311
++K P +S+IE+
Sbjct: 486 VKKAPGFSMIES 497
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 42/291 (14%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K+GD++ A+ +F+ + D + +I G++R I ++ M+ V PN+ TY
Sbjct: 66 KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKS--VSPNKFTY 123
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
++ +C + + GKQ+H ++L+ F LI +Y LE+A RVF +
Sbjct: 124 PPLIRACC---IDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDN 180
Query: 127 MVIKDVCTW-------------------------------NAMISSLASNSREKEALVMF 155
M +DV +W NAMI++ ++R EA +F
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
D M+ + + ++ ++L+AC +E G + H + K + + V+D+ +
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCK 299
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLL 262
G L +A E +P + S ++G +HG A++L E+ R ++
Sbjct: 300 CGCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMV 349
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ M KRD VSW ++I G+ ++G EA+ +F ++ R
Sbjct: 344 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLF--VLMEREGGR 401
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +++ S LS+CA +V L LGKQ+HG +++ F+G AL+ +Y K G +E A
Sbjct: 402 LNRSSFSSALSTCADVV---ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 458
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD+ +WN MI+ + + +EAL F+ MK +GL+ ++ T VAVL+AC+
Sbjct: 459 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHT 518
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + FH+M + V P +HY C+VDLLGRAGLL EA M++MPFEPDA++ G
Sbjct: 519 GLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGT 578
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++HG +L ++ ++P++ G YV+LSN++A RW LR M + G+
Sbjct: 579 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 638
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 639 KKVPGYSWIE 648
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 43/269 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV+N ++ A LFE M +RDV SW +I++G+ +NGC +A VF M
Sbjct: 127 MIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRM------PE 180
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVH-----------GYILRNEI---------- 97
N+ ++ ++LS+ + E + G + + G++ + +I
Sbjct: 181 KNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 240
Query: 98 -VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
V V +I Y + G ++ A ++F + DV TW AM+S N +EA +FD
Sbjct: 241 KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFD 300
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLG 214
M E+ NE+++ A+L + + VE+ EL F+V+P + + ++
Sbjct: 301 RMPER----NEVSWNAMLAGYVQGERVEMAKEL-------FDVMPCRNVSTWNTMITGYA 349
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G +SEAK MP S + G
Sbjct: 350 QCGKISEAKNLFDKMPKRDPVSWAAMIAG 378
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 27/244 (11%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D+ W I+ ++R G EA+ VFK M R + +Y +++S G + G L
Sbjct: 58 DIKEWNVAISSYMRTGRCSEALRVFKRM------PRWSSVSYNAMIS---GYLRNGEFEL 108
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ + + ++V +I Y + L +A +F+ M +DVC+WN ++S A
Sbjct: 109 ARMLFDEMPERDLV----SWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQ 164
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +A +FD M EK N++++ A+L+A + +E LF G E ++
Sbjct: 165 NGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACVLF----GSRENWALVS 216
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+ C++ + + EA++F SM D ++ +G +D R+L +
Sbjct: 217 -WNCLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTIITGYAQNGEID----EARQLFDE 270
Query: 265 QPKH 268
P H
Sbjct: 271 SPVH 274
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y++ G A+ +F+ M + VS+ ++I+G++RNG F A +F M
Sbjct: 66 ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM--------- 116
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
E VS G V L +++ + ++ ++ Y + GC++ A
Sbjct: 117 PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC----SWNTILSGYAQNGCVDDAR 172
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
RVF M K+ +WNA++S+ NS+ +EA V+F + L +++ +L + +
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNCLLGGFVKKK 228
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + F SM + +VV + ++ + G + EA++ P
Sbjct: 229 KIVEARQFFDSMKVR-DVVS----WNTIITGYAQNGEIDEARQLFDESP 272
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 199/314 (63%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++ +A LF+ M +DV+ W ++I G+ + EA+ +F+ M+ V
Sbjct: 300 LVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLREN--VT 357
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVLSVFMGTALIDLYGKVGC 116
PN+ T+++VL +CA L G L LGK VH YI +N V +V + T++I +Y K GC
Sbjct: 358 PNDVTFLAVLPACASL---GALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGC 414
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF+SM + + +WNAMIS LA N + AL +F+EM +G + ++ITFV VL+A
Sbjct: 415 VEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSA 474
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C +A VELG F SM + + P ++HYGC++DLL R+G EAK M +M EPD +
Sbjct: 475 CTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGA 534
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LL AC+IHG V+ V RL EL+P++ G YV+LSNI+AG RW+ +R +
Sbjct: 535 IWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLN 594
Query: 297 EAGIRKIPAYSLIE 310
+ G++K+P + IE
Sbjct: 595 DKGMKKVPGCTSIE 608
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 10/233 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV G +D A LF+ + +DVVSW ++I G+V++G F EA+ F M V
Sbjct: 199 LITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD--VS 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN++T VSVLS+C L + L LGK + ++ ++ + AL+D+Y K G + A
Sbjct: 257 PNQSTMVSVLSACGHLRS---LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTA 313
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KDV WN MI S +EALV+F+ M + + N++TF+AVL ACA
Sbjct: 314 RKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASL 373
Query: 181 QLVELGLELFHSMLGK----FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++LG + H+ + K V + + ++ + + G + A++ RSM
Sbjct: 374 GALDLG-KWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM 425
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 38/210 (18%)
Query: 10 DMDSAILLFENMLKR--DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
D+ A+ LF ++ + ++ W ++I ++ +F M+ + + PN T+
Sbjct: 74 DLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSG--LYPNSHTFP 131
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL---------- 117
S+ SCA + KQ+H + L+ + L + T+LI +Y +VG L
Sbjct: 132 SLFKSCA---KSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKS 188
Query: 118 ---------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
+ A R+F + KDV +WNAMI+ + R +EAL F
Sbjct: 189 TLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFT 248
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELG 186
M+E + N+ T V+VL+AC + +ELG
Sbjct: 249 RMQEADVSPNQSTMVSVLSACGHLRSLELG 278
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 195/304 (64%), Gaps = 8/304 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y G + A LF+ M R+ SW+S++ G VR+ EA+ VF M+G V
Sbjct: 176 MLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMG--VV 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ VS +S+C+ L + L G VH Y R +S+ + TA++D+YGK G + A
Sbjct: 234 PNESALVSAVSACSLLRS---LEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF +M +K++ +WN+MI+ LA N RE +AL +F +M+ G+R N+ITF+ +L AC+ +
Sbjct: 291 VRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHS 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G LF+ M+ F + P+ EHYG +VDLLGRAG + EA +F+ SMP EP + GA
Sbjct: 351 GLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGA 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L GACKIHG V+L E+ ++L+EL+P+H RY++LSNI+ RW+ +R+ + +
Sbjct: 411 LAGACKIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGASNRWDDMATVRRLLKD--- 467
Query: 301 RKIP 304
RK+P
Sbjct: 468 RKVP 471
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 2 IDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ Y + D+ SA LF DVV+WT+++ G G A F + M N+V
Sbjct: 114 VSAYFRATDVASAERLFSYTKDVADVVTWTTMVTGHANTGDLERARWFF-DAMPERNVVS 172
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A++ Y G L +A
Sbjct: 173 WN-------------------------------------------AMLGAYASAGMLSKA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M ++ +W++M++ L ++R +EAL +F EM G+ NE V+ ++AC+
Sbjct: 190 RKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLL 249
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+ +E G+ + + + + ++ +VD+ G+ G + A +MP +
Sbjct: 250 RSLEHGVWVHAYAKRELQGMSLVL-ATAIVDMYGKCGGIHNAVRVFAAMPVK 300
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 196/311 (63%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K GD D+A L+F M +++ +W +I+ + +NG EA+ +F N + + +
Sbjct: 299 MLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF-NELQLSKIAK 357
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS LS+CA L G + LG +H YI R IVL+ + ++L+D+Y K G LE+A
Sbjct: 358 PDEVTLVSTLSACAQL---GAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKA 414
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF S+ +DV W+AMI+ L + R K A+ +F EM+E ++ N +TF VL AC+ A
Sbjct: 415 LEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHA 474
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G FH M + VVP M+HY C+VD+LGRAG L EA E + M P ASV GA
Sbjct: 475 GLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGA 534
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC +H V+L +LL+L+P++ G V+LSNI+A RW + ++LRK M + +
Sbjct: 535 LLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTEL 594
Query: 301 RKIPAYSLIEA 311
+K P S IEA
Sbjct: 595 KKEPGCSSIEA 605
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 54/315 (17%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+ A LF+ + +DVVSW S+I+ F + C +A+ +F M V PN T V
Sbjct: 175 GDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKM--ERENVMPNSVTMVG 232
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR------ 122
VLS+CA ++ L G+ V YI R I + + + A++D+Y K G ++ A +
Sbjct: 233 VLSACAKKLD---LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289
Query: 123 -------------------------VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
VF +M +K++ WN +IS+ N + KEAL +F+E
Sbjct: 290 ERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNE 349
Query: 158 MK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
++ K + +E+T V+ L+ACA+ ++LG H + + +V +VD+ +
Sbjct: 350 LQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMYAKC 408
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRY 272
G L +A E S+ E D V A++ +HG A+DL E+ +++P
Sbjct: 409 GSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEA--KVKPNS---- 461
Query: 273 VVLSNI-----HAGL 282
V +N+ HAGL
Sbjct: 462 VTFTNVLCACSHAGL 476
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 115/220 (52%), Gaps = 5/220 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A LF+ + + ++ +W ++I + + ++ +F +++ + PN+ T+ V+
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL-PNKFTFPFVI 133
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + L +G VHG ++ + +++ +L+ YG G L A R+FK + K
Sbjct: 134 KAASEL---KASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN+MIS+ A + ++AL +F +M+ + + N +T V VL+ACA+ +E G
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RWV 249
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
S + + + + ++D+ + G + +A++ MP
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK + A LF+ + RD+VSWTSII+G V+ +++ +F +M ++ V
Sbjct: 244 LVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDM--QISGVE 301
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L G+ V YI R I + +GTAL+D+Y K GC+E A
Sbjct: 302 PDRIILTSVLSACASL---GALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMA 358
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + +++ TWNA++ LA + EAL F+ M G+R NE+TF+A+LTAC +
Sbjct: 359 LHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G F+ M+ + F P +EHYGC++DLL RAGLL EA +F+R+MP PD + G
Sbjct: 419 GLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWG 478
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL ACK +G V+L E+ LLEL+ + G YV+LSNI+A ERW+ T +R+ M + G
Sbjct: 479 ALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKG 538
Query: 300 IRKIPAYSLIE 310
IRK P S+IE
Sbjct: 539 IRKFPGSSVIE 549
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 135/262 (51%), Gaps = 27/262 (10%)
Query: 1 MIDGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN 51
+ D YV+N G A +F+ ML RDVVSWT +I+G+VR G F EAI +F
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196
Query: 52 MMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
M V PN AT+VSVL +C + G L +GK VHG + + + + +G AL+D+Y
Sbjct: 197 MD-----VVPNVATFVSVLVACGRM---GYLSMGKGVHGLVYKRAFGIGLVVGNALVDMY 248
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
K CL A ++F + +D+ +W ++IS L + K++L +F +M+ G+ + I
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILT 308
Query: 172 AVLTACARAQLVELG---LELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMR 227
+VL+ACA ++ G E ++++ H G +VD+ + G + A
Sbjct: 309 SVLSACASLGALDYGRWVQEYIERQGIEWDI-----HIGTALVDMYAKCGCIEMALHIFN 363
Query: 228 SMPFEPDASVLGALLGACKIHG 249
+P + ALLG +HG
Sbjct: 364 GIP-NRNIFTWNALLGGLAMHG 384
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 44/279 (15%)
Query: 9 GDMDSAI-LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
G +D A L + L + + ++I + + A V+ ++GN + P+ T+
Sbjct: 52 GFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFV--PDMYTFP 109
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C + G+ G+QVHG ++ + +++ +L+ Y G A RVF M
Sbjct: 110 VVLKACTKFL---GVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEM 166
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+++DV +W +IS EA+ +F +M + N TFV+VL AC R + +G
Sbjct: 167 LVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGK 223
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP----------------- 230
+ H ++ K + +VD+ + L EA++ +P
Sbjct: 224 GV-HGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQC 282
Query: 231 -----------------FEPDASVLGALLGACKIHGAVD 252
EPD +L ++L AC GA+D
Sbjct: 283 KQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALD 321
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 34/193 (17%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGK-VGCLERAIRVFKSMVIK-DVCTWNAMISSLA 143
KQ+H +++ + ++ F+ + + + +GK +G ++ A + +N +I++ A
Sbjct: 22 KQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYA 81
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-------------- 189
S+ K A +++ + G + TF VL AC + V+ G ++
Sbjct: 82 SSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLY 141
Query: 190 -------FHSMLGKFE----------VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
F+S+ GK+ V ++ G + + R GL EA M
Sbjct: 142 VQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYV-RTGLFDEAINLFLKMDVV 200
Query: 233 PDASVLGALLGAC 245
P+ + ++L AC
Sbjct: 201 PNVATFVSVLVAC 213
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G D A+ +F M R++VSW ++I G+V+ + EA+ VF+ M+ + +
Sbjct: 246 LVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI--IEGIE 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN++T S L++CA L G L G+ +H Y+ R+++ L+ +GTAL+D+Y K GC++ A
Sbjct: 304 PNQSTVTSALTACAQL---GSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ + KDV W AMI+ LA +L +F +M ++ N +TF+ VL+ACA
Sbjct: 361 LLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLELF M+ + + P ++HYGC+VDLLGRAG L EA +F+ SMP EP V GA
Sbjct: 421 GLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L C IH A +L +G L++LQP H GRY++L+N+++ ++W A ++R+ M G+
Sbjct: 481 LFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGV 540
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 541 DKSPGCSWIE 550
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 7/231 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + G +D + LF K+DVVSWT++ING +RNG EA+ F M + V
Sbjct: 144 LVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSG--VE 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
+E T VSVL + A L + ++ G+ VHG Y+ ++ V++G+AL+D+Y K G +
Sbjct: 202 VDEVTIVSVLCAAAMLRD---VWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A++VF M +++ +W A+I+ +R KEAL +F EM +G+ N+ T + LTACA+
Sbjct: 259 AVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G L H + + ++ + +VD+ + G + EA +P
Sbjct: 319 LGSLDQGRWL-HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 6/221 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ +LLF+ + + W +II GF + + + V + + N ++ P+ T+ +
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIIRGFSASSQ-PQMVLVAYSRLRNHGVI-PDRHTFPLL 110
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L + + L NE Q + +I++ + F+ +L+ + G ++ + R+F
Sbjct: 111 LKAFSKLRNENPF----QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAK 166
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV +W A+I+ N R EAL F EM+ G+ +E+T V+VL A A + V G +
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWV 226
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ + +VD+ + G +A + MP
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMP 267
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G++ SA +F+ + +D++SW+S+I + + F +++ +F+ M V+
Sbjct: 583 MIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAK--VK 640
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L LGK +H Y+ RN I M +LID++ K GC++ A
Sbjct: 641 PDAVVIASVLSACAHL---GALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEA 697
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M KD +WN++I LA+N E EAL +F M +G R NE+TF+ VL ACA
Sbjct: 698 LQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANK 757
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+ GL+ F M + P M+HYGCVV +L RAG L +AK F+ MP PD V
Sbjct: 758 RLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRI 817
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG V + ++L EL P + G Y++LSNI+A +RW+ A ++R+ M + +
Sbjct: 818 LLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAV 877
Query: 301 RKIPAYSLIEA 311
RK PA S++++
Sbjct: 878 RKSPACSVVDS 888
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+ G+++ A LLF+ M R+VVSWT +I+G+ R + EA+ +F++MM +
Sbjct: 12 VITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGG--IS 69
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T ++V+ + + L GG+ +G+ +HGY ++ I+ +G +LIDLY K+G ++ +
Sbjct: 70 PSEITVLAVVPAISNL---GGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNS 126
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++VF M+ + ++ +W ++IS A + EAL +F EM+ G+R N ITF++V+ AC+
Sbjct: 127 LKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSH 186
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE GL F SM+ ++ + P ++H+GC++D+LGRAG L EA++ + +P E + V
Sbjct: 187 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWR 246
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLG C +G V++ + + +L+ + G + VLSN+ L R++ A RK + E
Sbjct: 247 ILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERK 306
Query: 300 IRKIPAYSLI 309
I K+P +L+
Sbjct: 307 IVKVPGLALV 316
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 45/263 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+ A +F+ ML +DVVSW S+I G+ + F E + +F+ M V+
Sbjct: 451 LIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEE--VQ 508
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T V V+S+C L G + + YI RN I + V++G LID Y ++G L+ A
Sbjct: 509 ADKVTMVKVISACTHL---GDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSA 565
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M K+ T NAMI + A A +FD++ K L I++ +++ A ++A
Sbjct: 566 EKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDL----ISWSSMICAYSQA 621
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LELF M+ +PDA V+ +
Sbjct: 622 SHFSDSLELFRQ---------------------------------MQRAKVKPDAVVIAS 648
Query: 241 LLGACKIHGAVDL---CHEVGRR 260
+L AC GA+DL H+ RR
Sbjct: 649 VLSACAHLGALDLGKWIHDYVRR 671
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 5/174 (2%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
++ D+ A +FE + W +++ G ++ +AI +K ++P+ T
Sbjct: 355 LQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKK--AQEKGMKPDNMT 412
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ VL +CA G+Q+H ++++ +L +F+ +LI LY G L A +F
Sbjct: 413 FPFVLKACAKTYAPKE---GEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFD 469
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
M++KDV +WN++I + +R KE L +F+ M+ + ++A+++T V V++AC
Sbjct: 470 EMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF+ + WN ++ LA + K+A+V + + +EKG++ + +TF VL ACA+
Sbjct: 363 AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAK 422
Query: 180 AQLVELGLELFHSMLGKF 197
+ G E HS + K
Sbjct: 423 TYAPKEG-EQMHSHVIKL 439
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + A LF+ M R+ VSW++++NG+V+ G EA+ +F M VR
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARM--QAEDVR 206
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V VL++CA G L GK VHGY+ + I +++F GTAL+D+Y K G ++ A
Sbjct: 207 PDDTVLVGVLAACA---QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLA 263
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K+V W MI LA + R EA+++F +M+ G+R ++I F+ VL AC A
Sbjct: 264 MDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA 323
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ELF SM+ K+ + P +EHYGC+VDLL R G L EAKE ++ MP EPDA + GA
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGA 383
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ C+ H V+ V + + L+P G YV+LSNI+A R A ++R M E G+
Sbjct: 384 LMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGV 443
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 444 DKTPGCSTVE 453
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 83 YLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
+LG G +L R + LI Y + G L A +F M ++ +W+AM++
Sbjct: 124 FLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNG 183
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+EAL +F M+ + +R ++ V VL ACA+ +E G + H L K +
Sbjct: 184 YVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG-KWVHGYL-KAHGIK 241
Query: 202 IMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFE 232
I +G +VD+ + G + A + M ++
Sbjct: 242 INLFFGTALVDMYSKCGEVQLAMDVFERMQYK 273
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 41/242 (16%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
A LL L R V ++I R+ A+ ++ +++ L P+ T S+L S
Sbjct: 24 QAALLTSGQLPRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPH--TLPSLLKS 81
Query: 73 CA-GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY-GKVGCLERAIRVFKSMVIK 130
A G L VH + ++ + V + ALI ++ G +G L + + ++
Sbjct: 82 MALSPAVPGAAVLALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAV 141
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
D T+N +I++ A R +A +FDEM + N +++ A++ +A L +F
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPAR----NAVSWSAMVNGYVQAGDGREALRIF 197
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
M++ PD +VL +L AC HGA
Sbjct: 198 AR---------------------------------MQAEDVRPDDTVLVGVLAACAQHGA 224
Query: 251 VD 252
++
Sbjct: 225 LE 226
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DG+ ++G +D A F + ++D+VSW +++N +V++ F E+ +F M + V+
Sbjct: 440 MLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN--VK 497
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S+LSSCA + G L G V+ YI +NEI + +GTALID+YGK GC+E A
Sbjct: 498 PDKTTLISLLSSCAKV---GALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMA 554
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F ++ K+V W AM+++ A + EA+ ++ EM+E+G++ + +TF+A+L AC+
Sbjct: 555 YEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHG 614
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+ + + ++P + HYGC+VDLLGR G L E +F+ MP EPD S+ +
Sbjct: 615 GLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSS 674
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC+ H V+L + ++L+E+ P + G +V+LSNI+A RW+ + +R + E G+
Sbjct: 675 LMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGV 734
Query: 301 RKIPAYSLIE 310
K P +++IE
Sbjct: 735 PKQPGFTMIE 744
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 159/318 (50%), Gaps = 45/318 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYVK+ +D A LF+ M +R +VSWT++++G+V+ G + E++ +F+ M V
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQM--RFENVI 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E V+VLS+C L + LG+ VH +I+ +++ F+G AL+DLY K G L+ A
Sbjct: 366 PDEVALVTVLSACVHLED---FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEA 422
Query: 121 IRVFKSMVI-------------------------------KDVCTWNAMISSLASNSREK 149
+R F+ + KD+ +WN M+++ +
Sbjct: 423 LRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFN 482
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
E+ +F +M+ ++ ++ T +++L++CA+ + G+ + + + K E+ +
Sbjct: 483 ESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV-NVYIEKNEIGIDAMLGTAL 541
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQ 265
+D+ G+ G + A E + E + V A++ A + G A+DL E+ R ++
Sbjct: 542 IDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEER--GVK 598
Query: 266 PKHCGRYVVLSNI-HAGL 282
P H +L+ H GL
Sbjct: 599 PDHVTFIALLAACSHGGL 616
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 40/292 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + LFE M RDV+SW ++I+ +V G + EA+ +F M+ V+ V P+E
Sbjct: 178 YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEML--VSGVLPDEI 235
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--------- 115
T VS++S+CA L + L +GK++H YI+ N++ + + L+D+Y K G
Sbjct: 236 TMVSLVSTCAKLKD---LEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLL 292
Query: 116 --C----------------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
C +++A ++F M + + +W M+S E+
Sbjct: 293 SRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
L +F +M+ + + +E+ V VL+AC + +LG + H+ + + ++ ++D
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV-HAFIVTYGMLVDGFLGNALLD 411
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
L + G L EA +P + AS L G C+ G VD + ++ E
Sbjct: 412 LYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR-SGGVDKARDFFNKIPE 462
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 112/217 (51%), Gaps = 8/217 (3%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V N D IL + + + + + W +++ ++ GC E + + +M+ L+ + +T
Sbjct: 80 VNNLDCAHQILSYSH--EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLL--DIST 135
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ ++ +C + + LG +VHG IL+ + + L+ LY K G L+ ++F+
Sbjct: 136 FHFLIHACCKNFD---VKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFE 192
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M +DV +WN MIS +EAL +FDEM G+ +EIT V++++ CA+ + +E+
Sbjct: 193 KMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEM 252
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
G L H + ++ C+VD+ + G + EA
Sbjct: 253 GKRL-HLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEA 288
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + A LF+ M R+ VSW++++NG+V+ G EA+ +F M + VR
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARM--QADGVR 340
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V VL++CA L G L GK VHGY+ N I ++VF+GTAL+D+Y K G ++ A
Sbjct: 341 PDDTVLVGVLAACAQL---GVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLA 397
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M K+V W MI LA + R EAL +F +M+ G++ ++I F+ L AC
Sbjct: 398 MEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHT 457
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ELF SM+ K+ + P +EHYGC+VDLL R GLL+EA+E + MP +PDA + GA
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGA 517
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ C+ H V+L V + +EL+P G YV+L NI+A R A ++R M E G+
Sbjct: 518 LMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGV 577
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 578 DKTPGCSTVE 587
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+LR + LI Y + G + A +F M ++ +W+AM++ +EA
Sbjct: 268 LLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA 327
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVV 210
L +F M+ G+R ++ V VL ACA+ ++E G + H L K + I G +V
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYL-KANNIRITVFLGTALV 385
Query: 211 DLLGRAGLLSEAKEFMRSM 229
D+ + G + A E + M
Sbjct: 386 DMYAKCGEMQLAMEVFKVM 404
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G++ A F+ M RD +SWT +I+G++R GCF E++ +F+ M +
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-- 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L +G+ + YI +N+I V +G ALID+Y K GC E+A
Sbjct: 366 PDEFTMVSVLTACAHL---GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D TW AM+ LA+N + +EA+ +F +M++ ++ ++IT++ VL+AC +
Sbjct: 423 QKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M + P + HYGC+VD+LGRAGL+ EA E +R MP P++ V GA
Sbjct: 483 GMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGA 542
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H + +++LEL+P + Y +L NI+AG +RW ++R+ +V+ I
Sbjct: 543 LLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI 602
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 603 KKTPGFSLIE 612
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A +F+ K DV SW +I+G+ R + E+I + M NLV P T +
Sbjct: 184 GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM--ERNLVSPTSVTLLL 241
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VLS+C+ + ++ L K+VH Y+ + S+ + AL++ Y G ++ A+R+F+SM
Sbjct: 242 VLSACSKVKDKD---LCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK 298
Query: 129 IKDVCTWNAMISSLASNSREK-------------------------------EALVMFDE 157
+DV +W +++ K E+L +F E
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ G+ +E T V+VLTACA +E+G E + + K ++ + ++D+ + G
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCG 417
Query: 218 LLSEAKEFMRSM 229
+A++ M
Sbjct: 418 CSEKAQKVFHDM 429
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A LF + + DVV W ++I G+ + C GE + ++ NM+ V P+ T+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG--VTPDSHTFPF 139
Query: 69 VLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L+ GL +GG L GK++H ++++ + ++++ AL+ +Y G ++ A VF
Sbjct: 140 LLN---GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR 196
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +WN MIS +E++ + EM+ + +T + VL+AC++ + +L
Sbjct: 197 CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL-C 255
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ H + + + P + +V+ G + A RSM
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G++ A F+ M RD +SWT +I+G++R GCF E++ +F+ M +
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-- 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L +G+ + YI +N+I V +G ALID+Y K GC E+A
Sbjct: 366 PDEFTMVSVLTACAHL---GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D TW AM+ LA+N + +EA+ +F +M++ ++ ++IT++ VL+AC +
Sbjct: 423 QKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M + P + HYGC+VD+LGRAGL+ EA E +R MP P++ V GA
Sbjct: 483 GMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGA 542
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H + +++LEL+P + Y +L NI+AG +RW ++R+ +V+ I
Sbjct: 543 LLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI 602
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 603 KKTPGFSLIE 612
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A +F+ K DV SW +I+G+ R + E+I + M NLV P T +
Sbjct: 184 GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM--ERNLVSPTSVTLLL 241
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VLS+C+ + ++ L K+VH Y+ + S+ + AL++ Y G ++ A+R+F+SM
Sbjct: 242 VLSACSKVKDKD---LCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK 298
Query: 129 IKDVCTWNAMISSLASNSREK-------------------------------EALVMFDE 157
+DV +W +++ K E+L +F E
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ G+ +E T V+VLTACA +E+G E + + K ++ + ++D+ + G
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCG 417
Query: 218 LLSEAKEFMRSM 229
+A++ M
Sbjct: 418 CSEKAQKVFHDM 429
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A LF + + DVV W ++I G+ + C GE + ++ NM+ V P+ T+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG--VTPDSHTFPF 139
Query: 69 VLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L+ GL +GG L GK++H ++++ + ++++ AL+ +Y G ++ A VF
Sbjct: 140 LLN---GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR 196
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +WN MIS +E++ + EM+ + +T + VL+AC++ + +L
Sbjct: 197 CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL-C 255
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ H + + + P + +V+ G + A RSM
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 199/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY K+GD+ +A LFE M +R+V+SWT++I G+ + +AI +F+ M + V
Sbjct: 154 MLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRM--QLENVE 211
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
P+E + L++CA L G L LG+ + YI R + ++ + ALID+Y K G ++
Sbjct: 212 PDEIAMLVALTACARL---GALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKS 268
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A++VF++M K + TW MI+ LA + EAL MF M+ ++ N+ITF+A+L+AC+
Sbjct: 269 ALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSH 328
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G F+ M+ ++ + P +EHYGC++DLLGRAG L EA+ + MPFEP+A + G
Sbjct: 329 VGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWG 388
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC HG +L + LLEL+P + G Y +LSNI+A RWN + +RK M +AG
Sbjct: 389 SLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAG 448
Query: 300 IRKIPAYSLIE 310
++K+P SLIE
Sbjct: 449 VKKMPGGSLIE 459
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
V + A+++ Y K G L A +F+ M ++V +W A+I+ A +R +A+ +F M+
Sbjct: 148 VALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQL 207
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSM--LGKFEV-VPIMEHYGCVVDLLGRAG 217
+ + +EI + LTACAR +ELG + H + LG +P+ ++D+ ++G
Sbjct: 208 ENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNN---ALIDMYAKSG 264
Query: 218 LLSEAKEFMRSM 229
+ A + +M
Sbjct: 265 DIKSALQVFENM 276
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++ Y G +++A+ +F +M ++VVSW SII V+ G + EA+ +F M ++ V
Sbjct: 310 MVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMC--ISGVM 367
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++AT VS+LS C+ N G L LGKQ H YI N I +SV + +LID+Y K G L+ A
Sbjct: 368 PDDATLVSILSCCS---NTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTA 424
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I +F M K+V +WN +I +LA + +EA+ MF M+ GL +EITF +L+AC+ +
Sbjct: 425 IDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHS 484
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++G F M+ F + P +EHY C+VDLLGR G L EA ++ MP +PD V GA
Sbjct: 485 GLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGA 544
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+G +++ ++ ++LLEL + G YV+LSN+++ +RW+ +RK M ++GI
Sbjct: 545 LLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGI 604
Query: 301 RKIPAYSLIE 310
+K A S IE
Sbjct: 605 KKCRAISFIE 614
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 124/268 (46%), Gaps = 38/268 (14%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA +F+++ R +VSW S+I G+ + G EAI +F+ M+ V + T VS+LS+
Sbjct: 190 SARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLG--VEADVFTLVSLLSA 247
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--------------- 117
+ N L LG+ VH YI+ + + + ALID+Y K G L
Sbjct: 248 SSKHCN---LDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDV 304
Query: 118 ----------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
E A+++F M +K+V +WN++I L + EA+ +F M
Sbjct: 305 VSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCIS 364
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
G+ ++ T V++L+ C+ + LG + H + + + ++D+ + G L
Sbjct: 365 GVMPDDATLVSILSCCSNTGDLALGKQA-HCYICDNIITVSVTLCNSLIDMYAKCGALQT 423
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHG 249
A + MP E + ++GA +HG
Sbjct: 424 AIDIFFGMP-EKNVVSWNVIIGALALHG 450
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V+ GD+ A LLF+ + + + + +I G+ + +++ +F+ M+ + PN+ T
Sbjct: 82 VQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPM--PNQFT 139
Query: 66 YVSVLSSCAG--------LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ VL +CA +V+ + LG H + +L+ ++ LI
Sbjct: 140 FPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACV--QNAILTAYVACRLI--------- 188
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +VF + + + +WN+MI+ + EA+++F EM + G+ A+ T V++L+A
Sbjct: 189 LSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSAS 248
Query: 178 ARAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ ++LG + L+ + G E+ I+ + ++D+ + G L AK M
Sbjct: 249 SKHCNLDLGRFVHLYIVITG-VEIDSIVTN--ALIDMYAKCGHLQFAKHVFDQM 299
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
L P T +L C+ + K VH I+ + + V L+ L + G
Sbjct: 33 QLKSPTHQTLHHLLDQCSSMKRL------KLVHAQIILHGLAAQVVTLGKLLSLCVQEGD 86
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A +F + + +N +I ++++ ++L++F +M G N+ TF VL A
Sbjct: 87 LRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKA 146
Query: 177 CA-----------RAQLVELGL 187
CA AQ ++LG+
Sbjct: 147 CAAKPFYWEAVIVHAQAIKLGM 168
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 197/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K+GDM SA +FE +RDVV+W+++I+G+V+NG EA+ +F M V+
Sbjct: 257 MIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRN--VK 314
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+E VS++S+C+ + G L L K V Y+ ++ I V + ALID+ K G ++R
Sbjct: 315 PDEFIMVSLMSACSQM---GSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDR 371
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+ M +D+ ++ +M+ L+ + +A+ +F M +GL +++ F +LTAC+R
Sbjct: 372 ATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSR 431
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G F SM + +VP +HY C+VDLLGRAG L EA E ++SMP EP A G
Sbjct: 432 AGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWG 491
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+H ++L V +L EL+P++ G YV+LSNI+A E+W + LR M E G
Sbjct: 492 ALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERG 551
Query: 300 IRKIPAYSLI 309
IRKIP S I
Sbjct: 552 IRKIPGCSWI 561
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 18/279 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ A +F+ M +R+VVSWT++I G+ EA +F M
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM------PE 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++ +++S G V G L +++ + +V T +ID Y K G + A
Sbjct: 218 KNAVSWNAIIS---GYVKCGDLRSARKMFDEMPHRNVV----SFTTMIDGYAKSGDMASA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ +DV W+A+IS N + EA+ +F EM + ++ +E V++++AC++
Sbjct: 271 RFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQM 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+EL + + K + H ++D+ + G + A + MP + D
Sbjct: 331 GSLELA-KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP-KRDLISYC 388
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLS 276
+++ IHG + R+L L P V+L+
Sbjct: 389 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 427
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 15/227 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + V W + I G+ N + +F M + + P++ TY S++ +C+ +
Sbjct: 79 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV--PDKFTYPSLIKACSKV 136
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G+ G HG +R + VF+ T+LIDLYGK G + A +VF M ++V +W
Sbjct: 137 C---GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWT 193
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMI+ AS S EA +FDEM EK N +++ A+++ + + ++F M +
Sbjct: 194 AMIAGYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
V + ++D ++G ++ A+ P E D AL+
Sbjct: 250 NVV-----SFTTMIDGYAKSGDMASARFVFEEAP-ERDVVAWSALIS 290
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+QVH I+R + F+ + + L + VF + WN I + N
Sbjct: 42 EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 101
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+ +F MK ++ T+ +++ AC++ V+ G+ FH + V +
Sbjct: 102 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA-FHGSAVRCGVGGDVFV 160
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
++DL G+ G + A++ M
Sbjct: 161 MTSLIDLYGKCGEILCARKVFDEM 184
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 188/310 (60%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D+D+A+ +F+ M RD+V W SII GF +N EA+ +FK M L
Sbjct: 193 LIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLA- 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++AT SVL +C GL L LG+QVH ++L+ + + + ALID+Y K G LE A
Sbjct: 252 -DQATLTSVLRACTGL---ALLELGRQVHVHVLKFD--QDLILNNALIDMYCKCGSLEDA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F MV KDV +W+ M++ LA N ++AL +F+ MKE G R N IT + VL AC+ A
Sbjct: 306 NSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHA 365
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM F V P EHYGC++DLLGRAG L EA + + M EPD+
Sbjct: 366 GLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRT 425
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H VDL ++++EL+P+ G Y++LSNI+A +RW ++RK M GI
Sbjct: 426 LLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGI 485
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 486 RKTPGCSWIE 495
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 18/232 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF---VRNGCFGEAICVFKNMMGNVN 57
+++ YVK ++ A LF+ M +R+VVSWT++I+ + + + I +F+
Sbjct: 96 LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREG----- 150
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VRPN TY SVL +C GL N +Q+H I++ + VF+ +ALID+Y K L
Sbjct: 151 -VRPNMFTYSSVLRACDGLPNL------RQLHCGIIKTGLESDVFVRSALIDVYSKWSDL 203
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A+ VF M +D+ WN++I A NS EAL +F MK G A++ T +VL AC
Sbjct: 204 DNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRAC 263
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+ELG ++ H + KF+ I+ + ++D+ + G L +A M
Sbjct: 264 TGLALLELGRQV-HVHVLKFDQDLILNN--ALIDMYCKCGSLEDANSAFSRM 312
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 22/145 (15%)
Query: 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
++ R+G F +AI TY ++ C+ G + GK+VH +I
Sbjct: 43 MDAMERHGVFADAI------------------TYSELIKCCSA---RGAVQEGKRVHEHI 81
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+F+ L+++Y K LE A +F M ++V +W MIS+ SN +AL
Sbjct: 82 FCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKAL 140
Query: 153 VMFDEMKEKGLRANEITFVAVLTAC 177
M +G+R N T+ +VL AC
Sbjct: 141 KCLILMFREGVRPNMFTYSSVLRAC 165
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GYVK+G ++ A LF+ M +R+ VSW+++I G+V G F EA+ +F ++ + +R
Sbjct: 180 LINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDL--QLTGLR 237
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN A V L++C+ L G L G+ +H Y+ RN L +GTAL+D+Y K GC+E A
Sbjct: 238 PNHAGIVGALTACSYL---GSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIA 294
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M KD + ++IS LA++ + +A+ +F M+ + + NE+TF+ VL+AC+R
Sbjct: 295 CSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRM 354
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F+ M + + P ++HYGC+VDLLGRAGLL EAK +R MP EPD+ VLGA
Sbjct: 355 GLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGA 414
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C++HG V+L E L+E H G +V+LSN++A +W+ +RK M +
Sbjct: 415 LLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKV 474
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 475 KKVPGCSSIE 484
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 35/282 (12%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
N D+ A LF ++ R W +II FV A+ ++KNM+ L PN T+
Sbjct: 56 SNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFL--PNNYTF 113
Query: 67 VSVLSSCA-----GLVNEGG-LYLGKQVHGYILRNEIVL--------------------S 100
VL +C GL + + LG + + ++L I L
Sbjct: 114 SFVLRACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRD 173
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
V TALI+ Y K G +E A +F M ++ +W+AMI+ +EAL +F++++
Sbjct: 174 VITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQL 233
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGL 218
GLR N V LTAC+ ++ G H+ + + E+ ++ +VD+ + G
Sbjct: 234 TGLRPNHAGIVGALTACSYLGSLDHG-RWIHAYVDRNGTELDRVLG--TALVDMYAKCGC 290
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHG-AVDLCHEVGR 259
+ A MP + DA +L+ HG + D GR
Sbjct: 291 IEIACSVFEKMP-DKDAFAFTSLISGLANHGQSADAIQLFGR 331
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENML-KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I GYVK G+MD A+ LF M K + +SWT++I+G+V+ G EA+ +F M N N V
Sbjct: 182 VIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQ-NSN-V 239
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+ + S LS+C+ L G L GK +H Y + + + LID+Y K G +E
Sbjct: 240 PPDNVSLASALSACSQL---GALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEE 296
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ VFK+M K V W A+IS A + +EA+ F EM+ G++ N ITF AVLTAC+
Sbjct: 297 ALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSY 356
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G +F+++ + + P +EHYGC+VDLLGRAGLL+EA F++ MP +P+A + G
Sbjct: 357 TGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWG 416
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+IH ++L ++G L+E+ H GRYV ++NIHA ++W++A + R+ M E G
Sbjct: 417 SLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQG 476
Query: 300 IRKIPAYSLI 309
+ K+P S I
Sbjct: 477 VVKVPGCSAI 486
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 199/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY + ++D A LLF M RD++SWT++IN + +N F EA+ VF M + +
Sbjct: 183 LIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHG--IS 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L LGK++H YI+++ L V++G+ALID+Y K G L+R+
Sbjct: 241 PDEVTMATVISACAHL---GALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRS 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + K++ WN++I LA + +EAL MFD+M+ + ++ N +TFV+VL+AC A
Sbjct: 298 LLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHA 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G + F SM + P +EHYGC+VDLL +AGLL EA + +R+M EP+A + GA
Sbjct: 358 GLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGA 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK+H +++ +L+ L+P + G Y +L N++A + RW A +R M E G+
Sbjct: 418 LLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGV 477
Query: 301 RK-IPAYSLIE 310
K P S IE
Sbjct: 478 EKRCPGSSWIE 488
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 19/257 (7%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLVRPNEATYVSV 69
MD A+L + M +V + ++I GFV++ +A+ ++ M+ NV+ P T+ S+
Sbjct: 30 MDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS---PTSYTFPSL 86
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+ +C GLV++ L + VHG++ RN VF+ T+L+D Y +G +E ++RVF M
Sbjct: 87 IKAC-GLVSQ--LRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPE 143
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV W M+S L A +FD M ++ L T+ ++ AR + V++ L
Sbjct: 144 RDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNL----ATWNTLIDGYARLREVDVAELL 199
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACK 246
F+ M + +++ + +++ + EA M PD + ++ AC
Sbjct: 200 FNQMPAR-DII----SWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACA 254
Query: 247 IHGAVDLCHEVGRRLLE 263
GA+DL E+ +++
Sbjct: 255 HLGALDLGKEIHYYIMQ 271
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 44/194 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y G ++ ++ +F+ M +RDV +WT++++G VR G A +F +MM + NL
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLF-DMMPDRNLAT 179
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N LID Y ++ ++ A
Sbjct: 180 WN-------------------------------------------TLIDGYARLREVDVA 196
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D+ +W MI+ + N R +EAL +F+EM + G+ +E+T V++ACA
Sbjct: 197 ELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHL 256
Query: 181 QLVELGLELFHSML 194
++LG E+ + ++
Sbjct: 257 GALDLGKEIHYYIM 270
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 189/304 (62%), Gaps = 5/304 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY ++G M AI +F M +R+ VSW S+I+GFV+N F +A+ F M N R
Sbjct: 396 MIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTN--R 453
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +TY S L +CA L L++G+Q+H ++R+ + F G ALI Y K G + A
Sbjct: 454 ADWSTYASCLRACANLA---VLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEA 510
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F MV KD+ +WNA+I ASN + EA+ +F EM+ G+R +E+TFV +L+AC+ A
Sbjct: 511 KQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHA 570
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F+SM ++ + P+ EHY C+VDLLGRAG L+EA E ++ M +P+A V GA
Sbjct: 571 GLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGA 630
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC +H +L RL EL+P+ YV+LSNI A +W+ + R ++ E G+
Sbjct: 631 LLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGV 690
Query: 301 RKIP 304
K P
Sbjct: 691 NKPP 694
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 27/254 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGYV ++ A LF+ M ++ +SWT+II+G R G EA + M + N V
Sbjct: 272 MLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKM--SFNCVA 329
Query: 61 PNEATYVSVLSSCAGLVNEG-GLYLGKQVH----------GY----ILRNEIVLSVFMG- 104
A L + ++ ++ G +VH GY IL ++L M
Sbjct: 330 AKTALMHGYLQR--NMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPN 387
Query: 105 ------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
+I Y + G + +AI +F+ M ++ +WN++IS N R +AL F M
Sbjct: 388 KDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLM 447
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
+ RA+ T+ + L ACA ++ +G +L H++L + + ++ + G
Sbjct: 448 RRGTNRADWSTYASCLRACANLAVLHVGRQL-HNLLVRSGHINDSFAGNALISTYAKCGR 506
Query: 219 LSEAKEFMRSMPFE 232
+ EAK+ M ++
Sbjct: 507 ILEAKQIFDEMVYK 520
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM---MGNVN 57
MI GY KNG D A+ L M D+VSW S + G ++G A+ F M M + N
Sbjct: 149 MISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWN 208
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L+ AG V G L I ++ V L++ Y + G +
Sbjct: 209 LM-------------LAGFVRTGDLNAASSFFAKIESPNVISWV----TLLNGYCRAGRI 251
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +F M ++V WN M+ S +EA +FDEM K N I++ +++
Sbjct: 252 ADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIK----NSISWTTIISGL 307
Query: 178 ARAQLVELGLELFHSM 193
ARA ++ +L M
Sbjct: 308 ARAGKLQEAKDLLDKM 323
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 64/283 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ ++G +D A LF+ M R+ VSW ++I +G +A +F M VR
Sbjct: 55 MLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMP-----VR 109
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E ++ +V+ SC G L L + V + ++ A+I Y K G + A
Sbjct: 110 -DEFSW-TVMVSC--YARGGDLELARDVLDRMPGDKCTACY---NAMISGYAKNGRFDDA 162
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM---------------KEKGLRA 165
+++ + M D+ +WN+ ++ L + A+ FDEM + L A
Sbjct: 163 MKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNA 222
Query: 166 -----------NEITFVAVLTACARAQLVELGLELFHSMLGK------------------ 196
N I++V +L RA + +LF M +
Sbjct: 223 ASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPI 282
Query: 197 ------FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPF 231
F+ +PI + ++ L RAG L EAK+ + M F
Sbjct: 283 EEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSF 325
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 34/275 (12%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
++G + +A LF+ M R+ V++ ++++ R+G EA +F M G N V N
Sbjct: 29 ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGR-NTVSWN--A 85
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
++ LS + + L+ V R+E F T ++ Y + G LE A V
Sbjct: 86 MIAALSDHGRVADARSLFDRMPV-----RDE-----FSWTVMVSCYARGGDLELARDVLD 135
Query: 126 SMVIKDVCT--WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
M D CT +NAMIS A N R +A+ + EM L +++ + L ++ +
Sbjct: 136 RMP-GDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDL----VSWNSALAGLTQSGEM 190
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
++ F E+V M + ++ R G L+ A F + S + L G
Sbjct: 191 VRAVQFFD------EMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNG 244
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
C+ D R L + P+ R VV N+
Sbjct: 245 YCRAGRIAD-----ARDLFDRMPE---RNVVAWNV 271
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK GD+ A LF+ M +R+VVSWT++I G+ + EA+ VF+ M V +
Sbjct: 151 MIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRM--QVEGIE 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +SVLS+C L G + LG+ VH +++R + + + ++ID+Y K GC+E+A
Sbjct: 209 PDGVALLSVLSACGDL---GAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKA 265
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K V TW +I+ A + +A+ MF M+ + + N++TF+A+L+AC+
Sbjct: 266 VEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHV 325
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L +LG F+ M+ ++ + P +EHYGC+VDLLGRAG L EA++ ++ MP + +A++ GA
Sbjct: 326 GLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGA 385
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A + HG DL E L+EL+P + G Y++LSNI A ERW+ + LRKAM E G+
Sbjct: 386 LLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGL 445
Query: 301 RKIPAYSLIE 310
R +P S IE
Sbjct: 446 RNVPGASSIE 455
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V +I Y K G L A +F +M ++V +W +I A R +EA+ +F
Sbjct: 142 VRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRR 201
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLG 214
M+ +G+ + + ++VL+AC V+LG E H + G + +P+M ++D+
Sbjct: 202 MQVEGIEPDGVALLSVLSACGDLGAVDLG-EWVHRFVVRRGLRQEIPLM---NSIIDMYM 257
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G + +A E M E L+ +HG
Sbjct: 258 KCGCIEKAVEVFEGME-EKSVVTWTTLIAGFALHG 291
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+IDGY K+ + +A LF M R+ V+W ++I+ +V+ G FG AI +F+ M V
Sbjct: 144 IIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN--V 201
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P E T VS+LS+CA L G L +G+ +HGYI + + V +G ALID+Y K G LE
Sbjct: 202 KPTEVTMVSLLSACAHL---GALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEA 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI VF + K++ WN++I L N R +EA+ F M+++G++ + +TFV +L+ C+
Sbjct: 259 AIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSH 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ L+ G F MLG + + P +EHYGC+VDLLGRAG L EA E +R+MP +P++ VLG
Sbjct: 319 SGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLG 378
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+IH L +V ++LLEL P G YV LSN++A L RW+ RK M++ G
Sbjct: 379 SLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRG 438
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 439 VHKTPGCSSIE 449
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ A +F M +RDVV+ ++I+ ++G EA +F NM
Sbjct: 51 LLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM------TE 104
Query: 61 PNEATYVSVLSS-CA-GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N ++ S+++ C G +N L + V V A+ID Y K L
Sbjct: 105 RNSCSWNSMITCYCKLGDINSARL---------MFDCNPVKDVVSWNAIIDGYCKSKQLV 155
Query: 119 RAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +F M ++ TWN MIS+ A+ MF +M+ + ++ E+T V++L+AC
Sbjct: 156 AAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215
Query: 178 ARAQLVELGLELFHSML 194
A +++G E H +
Sbjct: 216 AHLGALDMG-EWIHGYI 231
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N V P++ ++ +L SCA G LG+ H I++ + + T L+D Y KVG
Sbjct: 4 NDVLPSKTSFSLILRSCA---ISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
L+ A RVF M +DV NAMIS+L+ + +EA +FD M E+
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER 105
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 200/311 (64%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMD-SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
++ Y + G M+ ++ +F ++VVSW ++I G+ G F E + +F++M V
Sbjct: 180 LLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG--V 237
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T VSVLS+CA + G L G+ VH YI +N I + F+ TAL+D+Y K G +E+
Sbjct: 238 KPDNCTLVSVLSACAHV---GALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEK 294
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ VF S + KD+ TWN++IS L+++ + AL +F EM +G + NE+TFV VL+AC+R
Sbjct: 295 ALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSR 354
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L++ G E+F+ M+ + P +EHYGC+VDLLGR GLL EA+E ++ MP + + V
Sbjct: 355 AGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWE 414
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC+ HG V+L V ++LLEL P+ +V LSN++A + RW ++R+ M G
Sbjct: 415 SLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQG 474
Query: 300 IRKIPAYSLIE 310
+RK P S+IE
Sbjct: 475 VRKDPGCSMIE 485
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 39/266 (14%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + + W +II + + A+ +F M+ V P++ T+ L SC
Sbjct: 64 IFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS--VLPDKYTFTFALKSCGSF 121
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA---------------- 120
G+ G+Q+HG++L+ + +F+ LI LY GC+E A
Sbjct: 122 ---SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWN 178
Query: 121 ----------------IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
RVF +K+V +WNAMI+ + R E LV+F++M+ G++
Sbjct: 179 ALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVK 238
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ T V+VL+ACA + G E H+ + K + +VD+ + G + +A E
Sbjct: 239 PDNCTLVSVLSACAHVGALSQG-EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALE 297
Query: 225 FMRSMPFEPDASVLGALLGACKIHGA 250
S D S +++ HG+
Sbjct: 298 VFNSC-LRKDISTWNSIISGLSTHGS 322
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 13/222 (5%)
Query: 87 QVHGYILRNEIVLSVFMGTALI---DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
Q H +IL++ ++ S F + LI + A +F + + WN +I + A
Sbjct: 25 QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
++ + AL +F +M + ++ TF L +C VE G ++ H + K + +
Sbjct: 85 NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQI-HGHVLKTGLGDDL 143
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
++ L G + +A+ + M E D ALL A G ++L RR+
Sbjct: 144 FIQNTLIHLYASCGCIEDARHLLDRM-LERDVVSWNALLSAYAERGLMEL---ASRRVFG 199
Query: 264 LQP-KHCGRY--VVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
P K+ + ++ HAG R++ L + M AG++
Sbjct: 200 ETPVKNVVSWNAMITGYSHAG--RFSEVLVLFEDMQHAGVKP 239
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 196/306 (64%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD +SA +FE M +RD+V+W S+INGF NG EA+ +F+ M +V V P+
Sbjct: 163 YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREM--SVEGVEPDGF 220
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+ A L G L LG++VH Y+L+ + + + +L+DLY K G + A RVF
Sbjct: 221 TVVSLLSASAEL---GALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVF 277
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M ++ +W ++I LA N +EAL +F EM+ +GL +EITFV VL AC+ +++
Sbjct: 278 SEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLD 337
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E F M + ++P +EHYGC+VDLL RAGL+ +A E++++MP +P+A + LLGA
Sbjct: 338 EGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGA 397
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IHG + L LL L+PKH G YV+LSN++A RW+ +R++M++ G++K P
Sbjct: 398 CTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTP 457
Query: 305 AYSLIE 310
YSL+E
Sbjct: 458 GYSLVE 463
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 129/271 (47%), Gaps = 14/271 (5%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+ M A +F + +V +W +II G+ + A ++ M+ V+ V P+ TY
Sbjct: 65 SAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMV--VSCVEPDTHTYP 122
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L + + +N + G+ +H +RN VF+ +L+ +Y G E A +VF+ M
Sbjct: 123 FLLKAISKSLN---VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELM 179
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+D+ WN+MI+ A N R EAL +F EM +G+ + T V++L+A A +ELG
Sbjct: 180 KERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGR 239
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ H L K + ++DL + G + EA+ M E +A +L+ +
Sbjct: 240 RV-HVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLIVGLAV 297
Query: 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
+G G LEL + G+ +V S I
Sbjct: 298 NG-------FGEEALELFKEMEGQGLVPSEI 321
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 13/144 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F M +R+ VSWTS+I G NG EA+ +FK M G LV
Sbjct: 260 LLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQ-GLV- 317
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNE--IVLSVFMGTALIDLYGKVGC 116
P+E T+V VL +C+ G+++EG Y + ++ E I+ + ++DL + G
Sbjct: 318 PSEITFVGVLYACSHCGMLDEGFEYFRR------MKEECGIIPRIEHYGCMVDLLSRAGL 371
Query: 117 LERAIRVFKSMVIK-DVCTWNAMI 139
+++A ++M ++ + W ++
Sbjct: 372 VKQAYEYIQNMPVQPNAVIWRTLL 395
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 195/312 (62%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
MI GYV+N D A+ +F+ M +RDV+SW SII + +NG E++ +F M+ G +N
Sbjct: 148 MITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 207
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N T +VL +CA + G LGK +H +++ + +VF+GT++ID+Y K G +E
Sbjct: 208 ---NAVTLSAVLLACA---HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 261
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A + F M K+V +W+AM++ + KEAL +F EM G++ N ITFV+VL AC+
Sbjct: 262 MARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 321
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+E G F +M +F+V P +EHYGC+VDLLGRAG L EA + ++ M PD V
Sbjct: 322 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 381
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC++H VDL R+L EL PK+CG YV+LSNI+A RW +R M +
Sbjct: 382 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNS 441
Query: 299 GIRKIPAYSLIE 310
G+ K P +SL++
Sbjct: 442 GLVKPPGFSLVD 453
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 48/303 (15%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K +V SW S+I R+G EA+ F +M ++L +PN +T+ + SC+ L++ L
Sbjct: 38 KTNVFSWNSVIAELARSGDSVEALRAFSSMR-KLSL-KPNRSTFPCAIKSCSALLD---L 92
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL------------------------- 117
+ G+Q H L +F+ +AL+D+Y K G L
Sbjct: 93 HSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGY 152
Query: 118 ------ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITF 170
RA+RVF M +DV +WN++I+ A N E++ +F M + G + N +T
Sbjct: 153 VQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 212
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
AVL ACA + LG + H + K + + ++D+ + G + A++ M
Sbjct: 213 SAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 271
Query: 231 FEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--E 283
E + A++ +HG A+++ +E+ + ++P + VL+ HAGL E
Sbjct: 272 -EKNVKSWSAMVAGYGMHGHAKEALEVFYEMN--MAGVKPNYITFVSVLAACSHAGLLEE 328
Query: 284 RWN 286
W+
Sbjct: 329 GWH 331
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 190/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG + A+ LF M +D VSW+++I+G V+N +A+ VF NM +R
Sbjct: 338 MIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQG--IR 395
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L L GK VH YI +N+ +S+ +GT+LI++Y K GCLE A
Sbjct: 396 PDEVTIVSVISACTNL---SALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAA 452
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACAR 179
+ F M K WNA+I LA N ++L MF EM+ NEITF VL+AC
Sbjct: 453 LEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRH 512
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G F M ++++VP + HYGC+VDLLGRAG + EA++ ++SMP PD G
Sbjct: 513 AGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWG 572
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG ++ VGR+L+ P H G +LSNI+A W DLR +M +
Sbjct: 573 ALLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRH 632
Query: 300 IRKIPAYSLIEA 311
++K+ +S++++
Sbjct: 633 VQKVSGHSVVKS 644
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 77/343 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + + G +D A +F+ RD+ +WT++I+ F RN F EA+ VF M V
Sbjct: 206 MVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHV- 264
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
+E VSV+S+CA + G+ HG ++R + V + ALI +Y
Sbjct: 265 -DEPLMVSVVSACA---QSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAA 320
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
K G ++ A+ +F +M KD +W+ +IS N++
Sbjct: 321 RRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSS 380
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG---------------LELFHSML 194
+AL +FD M+ +G+R +E+T V+V++AC +E G L L S++
Sbjct: 381 DALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLI 440
Query: 195 GKF----------EVVPIMEHYG-----CVVDLLGRAGLLSEAKEFMRSMPFE----PDA 235
+ E IME G V+ L GL+ ++ + M P+
Sbjct: 441 NMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNE 500
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
+L AC+ G VD GR +L +H RY ++ NI
Sbjct: 501 ITFTGVLSACRHAGLVD----EGRHFFKLM-QH--RYQIVPNI 536
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 44/162 (27%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D VSW +I+ +V G +A+ VF M P
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVEVFAQM--------PK---------------------- 197
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
RN +S +++ L+G+ G ++ A RVF + +D+ TW AMIS
Sbjct: 198 ---------RNATAVS-----SMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFER 243
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
N EAL +F M+ + +E V+V++ACA++++++ G
Sbjct: 244 NDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNG 285
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + ++CA + + G+QVH + + + ++++ ALI +Y GCL A
Sbjct: 101 PDSYTHPILAAACA---SRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
RVF + + D +WN ++++ +A+ +F +M ++ A
Sbjct: 158 RRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATA 202
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 199/315 (63%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
++DGY K D+ +A +F M +RDVVSW+++I+G V+ G EA+ VF+ M +
Sbjct: 135 LLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHD 194
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VR N+ T VSVL +CA L G L G+++H Y+ + L++ + T+L+D+Y K G +
Sbjct: 195 GVRANDVTMVSVLGACAHL---GDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAI 251
Query: 118 ERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
A+ VF ++ ++ DV WNA+I LA + +E+L MF +M+ G+ +EIT++ +L+
Sbjct: 252 VEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLCLLS 311
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC LV+ F S+ + + P +EHY C+VD+LGRAG L EA ++SMP +P
Sbjct: 312 ACVHGGLVDEAWRFFRSLEAQ-RLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSV 370
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
SVLGALL AC IHG V+L VGR+L+ LQP H GRY+ LSNI+A RW A RK M
Sbjct: 371 SVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVM 430
Query: 296 VEAGIRKIPAYSLIE 310
E G++K+P +S I+
Sbjct: 431 EERGVKKVPGFSEID 445
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+G+V+NGD+D A LF M +++VVSWT++INGF +NG +A+ +F M+ VR
Sbjct: 245 LINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEG--VR 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VS L +C + G L +G+++H Y+ N L+ +GTAL+D+Y K G ++ A
Sbjct: 303 PNDLTVVSALLACTKI---GALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF KD+ TW+ MI A + +AL F +MK G+ +E+ F+A+LTAC+ +
Sbjct: 360 SRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHS 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL F SM + + P M+HY +VDLLGRAG L EA F++SMP PD + GA
Sbjct: 420 GNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGA 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC+ H +++ +LL+L+PKH G YV LSN++A + RW +R M G+
Sbjct: 480 LFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGV 539
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 540 EKDPGWSYIE 549
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 49/198 (24%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD----VVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
++D YVK G++ + LF+ +R+ ++ W +ING + G +A +F+ M
Sbjct: 179 LVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAM---- 234
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
P AG N +LI+ + + G
Sbjct: 235 ----PERN---------AGSWN---------------------------SLINGFVRNGD 254
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+RA +F M K+V +W MI+ + N ++AL MF M E+G+R N++T V+ L A
Sbjct: 255 LDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLA 314
Query: 177 CARAQLVELGLELFHSML 194
C + +++G E H+ L
Sbjct: 315 CTKIGALQVG-ERIHNYL 331
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H I + + + + T LI + L+ A+ +F+ ++ +NA+I LA NS
Sbjct: 58 QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
R + ++ F M +R + +T VL + A LV++GL
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV--AALVDVGL 156
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 193/313 (61%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G +D A LFE RD+V WT++ING+V+ F E I +F M + V+
Sbjct: 281 MVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEM--QIRGVK 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V++L+ CA G L GK +H YI N I + +GTALI++Y K GC+E++
Sbjct: 339 PDKFIVVTLLTGCA---QSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKS 395
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD +W ++I LA N + EAL +F M+ GL+ ++ITFVAVL+AC+ A
Sbjct: 396 FEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHA 455
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-- 238
LVE G +LFHSM + + P +EHYGC +DLLGRAGLL EA+E ++ +P + + ++
Sbjct: 456 GLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPL 515
Query: 239 -GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALL AC+ +G +D+ + L +++ + +L++I+A +RW +R M +
Sbjct: 516 YGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKD 575
Query: 298 AGIRKIPAYSLIE 310
GI+K+P YS IE
Sbjct: 576 LGIKKVPGYSAIE 588
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 172/373 (46%), Gaps = 83/373 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+D Y + G ++ +FE M RD VSW +I+G+VR F EA+ V++ M N +
Sbjct: 149 FMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESN-EK 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEAT VS LS+CA L N L LGK++H YI +E+ L+ MG AL+D+Y K G + A
Sbjct: 208 PNEATVVSTLSACAVLRN---LELGKEIHDYIA-SELDLTTIMGNALLDMYCKCGHVSVA 263
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
+F +M +K D+ W AMI+ +R +
Sbjct: 264 REIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFE 323
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV-------VPI 202
E + +F EM+ +G++ ++ V +LT CA++ +E G + H+ + + + +
Sbjct: 324 ETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG-KWIHNYIDENRIKVDAVVGTAL 382
Query: 203 MEHY---GC---------------------VVDLLGRAGLLSEAKEFMRSMP---FEPDA 235
+E Y GC ++ L G SEA E ++M +PD
Sbjct: 383 IEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDD 442
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAG--LERWNRATDLR 292
A+L AC G V E GR+L Y + N+ H G ++ RA L+
Sbjct: 443 ITFVAVLSACSHAGLV----EEGRKLFH---SMSSMYHIEPNLEHYGCFIDLLGRAGLLQ 495
Query: 293 KAMVEAGIRKIPA 305
+A E ++K+PA
Sbjct: 496 EA--EELVKKLPA 506
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 21/305 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD + A +F + + + +I FV++G F AI +F+ + + V P+ TY
Sbjct: 56 GDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQL--REHGVWPDNYTYPY 113
Query: 69 VLSS--CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL C G V EG ++VH ++++ + ++ + +D+Y ++G +E +VF+
Sbjct: 114 VLKGIGCIGEVREG-----EKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEE 168
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVEL 185
M +D +WN MIS R +EA+ ++ M E + NE T V+ L+ACA + +EL
Sbjct: 169 MPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLEL 228
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
G E+ + + ++ IM + ++D+ + G +S A+E +M + + + +++
Sbjct: 229 GKEIHDYIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGY 285
Query: 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVL-SNIHAGLERWNRATDLRKAMVEAGIRKIP 304
I G +D R L E P R +VL + + G ++NR + E IR +
Sbjct: 286 VICGQLDQ----ARNLFERSP---SRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVK 338
Query: 305 AYSLI 309
I
Sbjct: 339 PDKFI 343
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/314 (43%), Positives = 202/314 (64%), Gaps = 8/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++DGY K D+ SA +F M +RDVVSW+++I+G V+ G EA+ +F+ M G N
Sbjct: 133 LLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAGAGNG 192
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VR N+ T VSVL +CA L G L G+Q+H Y+ + +L++ + T+L+D+Y K G +
Sbjct: 193 VRANDVTMVSVLGACAHL---GDLGRGRQMHRYLQEHGFLLNLRLATSLVDMYAKCGAIS 249
Query: 119 RAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A+ VF+++ + DV WNA+I LA + E++ +F EM+ G+ +EIT++ +L+A
Sbjct: 250 EALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPDEITYLVLLSA 309
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C LV LF S+ + + P +EHY C+VD+LGRAG L EA ++SMP EP+ S
Sbjct: 310 CVHGGLVGEAWRLFRSLEVQ-GLRPHVEHYACLVDVLGRAGHLEEAYGVVKSMPMEPNVS 368
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALL AC +HG V+L VGR+L++LQP H GRY+ LSNI+A RW A RK M
Sbjct: 369 VLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRWQEAKKARKVME 428
Query: 297 EAGIRKIPAYSLIE 310
E G++KIP +S I+
Sbjct: 429 ERGVKKIPGFSEID 442
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---- 160
AL+D Y K L A VF M +DV +W+AMI +EAL +F+ M+
Sbjct: 131 NALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAGAG 190
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
G+RAN++T V+VL ACA + G ++ H L + + + +VD+ + G +S
Sbjct: 191 NGVRANDVTMVSVLGACAHLGDLGRGRQM-HRYLQEHGFLLNLRLATSLVDMYAKCGAIS 249
Query: 221 EAKEFMRSMPF-EPDASVLGALLGACKIHG 249
EA E R++P D + A++G +HG
Sbjct: 250 EALEVFRAVPVTTTDVLIWNAVIGGLAVHG 279
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 196/310 (63%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY NG+++ +F+ M +R+V SW +I G+V+NG F E + FK M+ +++
Sbjct: 244 MLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVI- 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T V+VLS+C+ L G L +GK VH Y ++F+G LID+Y K G +E A
Sbjct: 303 PNDFTLVAVLSACSRL---GALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + KD+ +WN +I+ LA + +AL MFD MK +G + +TFV +L+AC
Sbjct: 360 VVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHM 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM+ + +VP +EHYGC+VDLLGRAGLL +A F+R MP EPDA + A
Sbjct: 420 GLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAA 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+++ V++ +RL+EL+P + +V++SNI+ L R L+ AM + G
Sbjct: 480 LLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGF 539
Query: 301 RKIPAYSLIE 310
RK+P S+IE
Sbjct: 540 RKLPGCSVIE 549
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR--PNEATYVSVLSSCA 74
LF+ + + + +W ++ G+++NG + + +F G +N + PN T+ ++ SC
Sbjct: 66 LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLF----GELNRIAGMPNCFTFPMIIKSCG 121
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
L G+ G++VH ++ + F+ T+LID+Y K GC+E A +VF M ++V
Sbjct: 122 KL---EGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF---- 190
W A+I+ +FD E+ + + + +++ ++ + ELF
Sbjct: 179 WTAIINGYILCGDVVSGRRLFDLAPERDV----VMWSVLISGYIESKNMAAARELFDKMP 234
Query: 191 -------HSMLGKFEVVPIMEHYGCVVD------------LLG---RAGLLSEAKEFMRS 228
++ML + V +E + V D L+G + GL SE E +
Sbjct: 235 NRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKR 294
Query: 229 MPFE----PDASVLGALLGACKIHGAVDL 253
M E P+ L A+L AC GA+D+
Sbjct: 295 MLVEGHVIPNDFTLVAVLSACSRLGALDM 323
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A +F M +R+VV WT+IING++ G +F +L
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLF-------DLAP 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ SVL S G + + +++ + N +S A+++ Y G +E
Sbjct: 204 ERDVVMWSVLIS--GYIESKNMAAARELFDK-MPNRDTMS---WNAMLNGYAVNGEVEMF 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+VF M ++V +WN +I N E L F M +G + N+ T VAVL+AC+R
Sbjct: 258 EKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSR 317
Query: 180 AQLVELG 186
+++G
Sbjct: 318 LGALDMG 324
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 16/207 (7%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
E ++++L SC N L+ Q+ I+ + + + F+ I + + A +
Sbjct: 12 EEKFITLLRSCK---NYERLH---QIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARK 65
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F + + TWNAM N ++ +V+F E+ N TF ++ +C + +
Sbjct: 66 LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEG 125
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
V G E+ H K ++D+ + G + +A + M E + V A+
Sbjct: 126 VREGEEV-HCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEM-HERNVVVWTAI- 182
Query: 243 GACKIHGAVDLCHEV--GRRLLELQPK 267
I+G + LC +V GRRL +L P+
Sbjct: 183 ----INGYI-LCGDVVSGRRLFDLAPE 204
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 194/311 (62%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
++ G+ +D A F+ M +RD VSWT++I+G++R F E + +F++M M NV
Sbjct: 312 IVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV--- 368
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+E T VS+L++CA L G L LG+ YI +N+I F+G ALID+Y K G +E+
Sbjct: 369 KPDEFTMVSILTACAHL---GALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEK 425
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F M KD TW AMI LA+N +EAL MF M E + +EIT++ V+ AC
Sbjct: 426 AKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTH 485
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G F +M + + P + HYGC+VDLLGRAG L EA E + +MP +P++ V G
Sbjct: 486 VGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWG 545
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC++H V L +LEL+P++ YV+L NI+A ++W ++RK M+E G
Sbjct: 546 SLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERG 605
Query: 300 IRKIPAYSLIE 310
I+KIP SL+E
Sbjct: 606 IKKIPGCSLME 616
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 36/237 (15%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+VV+W +++G+ R + E+ +F M V PN T V +LS+C+ L + G
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVG--- 257
Query: 85 GKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
GK ++ ++ IV ++ + ALID++ G ++ A VF M +DV +W ++++ A
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA 317
Query: 144 SN-------------------------------SREKEALVMFDEMKEKGLRANEITFVA 172
+ +R KE L +F +M+ ++ +E T V+
Sbjct: 318 NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVS 377
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+LTACA +ELG E + + K ++ ++D+ + G + +AK+ M
Sbjct: 378 ILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM 433
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 134/292 (45%), Gaps = 31/292 (10%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++GD+ A +F+ + + V W ++I G+ R C + ++K M+ V+ ++P+ T+
Sbjct: 81 ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLML--VHNIKPDGFTF 138
Query: 67 VSVLSSCAGLVNEGGLYLGK------QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+L G + L GK +HG++ N +F+ I L+ G + A
Sbjct: 139 PFLLK---GFTKDMALKYGKVLLNHAVIHGFLDSN-----LFVQKGFIHLFSLCGLVNYA 190
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACA 178
++F +V TWN ++S R +E+ +F EM++K + N +T V +L+AC+
Sbjct: 191 RKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRSMPFEPDA 235
+ + + G +++ + + V P + ++D+ G + A+ + M++
Sbjct: 251 KLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWT 310
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
S++ C+I ++ R+ + P+ YV + + G R NR
Sbjct: 311 SIVTGFANTCRI--------DLARKYFDQMPER--DYVSWTAMIDGYLRMNR 352
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 197/305 (64%), Gaps = 9/305 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G + A LF+ M R+ +W S+I G +++ EA+ VF +M+ + V
Sbjct: 176 MLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASG--VV 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
PNE VS +S+C L + G VHGY R +S + TA++D+YGK G +
Sbjct: 234 PNEPALVSTVSACTQL---RWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRD 290
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF +M ++++ +WN+MI+ LA N E++AL +F +M+ G+R N+ITF+ +L+AC+
Sbjct: 291 AVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSH 350
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ G LF+ M+ F + P+ EHYG +VDLLGR+G + EA +F++SMP EP + G
Sbjct: 351 SGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWG 410
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL GACKIHG V+L EV ++L+EL+P+H RY++LSNI+A RW+ ++R+ + +
Sbjct: 411 ALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKD-- 468
Query: 300 IRKIP 304
RK+P
Sbjct: 469 -RKVP 472
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V ++ Y + G L +A ++F M ++ TW +MI+ L + +EAL +F +M
Sbjct: 169 NVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMV 228
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELF----HSMLGKFEVVPIMEHYGCVVDLLGR 215
G+ NE V+ ++AC + + +E G + + G V +VD+ G+
Sbjct: 229 ASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLAT----AIVDMYGK 284
Query: 216 AGLLSEAKEFMRSMP 230
G + +A +MP
Sbjct: 285 CGSIRDAVRVFAAMP 299
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V T ++ + G +ERA F +M K+V +WN M+ + A +A +FD
Sbjct: 136 VADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDR 195
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
M + N T+ +++T ++ E L +F M+ VVP
Sbjct: 196 MPSR----NAATWGSMITGLLQSDHCEEALRVFSDMVAS-GVVP 234
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K G +D A+ LFE + RDVV W++II GF RNG E+I +F+ M+ + V
Sbjct: 256 LVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADS--VT 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ S++ +C+ L G L G+ VHGY++RN + L V T+ ID+Y K GC+ A
Sbjct: 314 PNSVTFASIVLACSSL---GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTA 370
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + K+V +W+ MI+ + EAL +F EM+ N +TFV+VL+AC+ +
Sbjct: 371 YRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHS 430
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G F SM + + P+ EHY C+VDLLGRAG + EA F+ +MP EP AS GA
Sbjct: 431 GRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGA 490
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +L EV ++LL L+ G YV+LSNI+A + W R M E GI
Sbjct: 491 LLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGI 550
Query: 301 RKIPAYSLIE 310
KI ++ IE
Sbjct: 551 HKIVGFTSIE 560
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G ++ A +FE + ++ V W +I G + F E VF+ R
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLN---FSEEFGVFEL------FSR 204
Query: 61 PNEATYVSVLSSCAGLVNE-GGLYLGKQ---VHGY-ILRNEIVLSVFMGTALIDLYGKVG 115
+ + GL+ G +Y GK+ HG I +N I + F+ T+L+D+Y K G
Sbjct: 205 MRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCG 264
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
L+ A+++F+ + +DV W+A+I+ A N R E++ MF +M + N +TF +++
Sbjct: 265 FLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVL 324
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC+ ++ G + H + + V +++Y +D+ + G + A +P E +
Sbjct: 325 ACSSLGSLKQGRSV-HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNV 382
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
++ +HG LC E E++
Sbjct: 383 FSWSTMINGFGMHG---LCAEALNLFYEMR 409
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y++ G + A F ++ ++ SW +I+ +N CF + + +FK M+ LV +
Sbjct: 56 AYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV--DS 113
Query: 64 ATYVSVLSSCAGLVNEGGLYLG-KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
V + +C GL L+ G K H ++ + ++ AL+++Y ++G LE A +
Sbjct: 114 FNLVFAVKACFGL----SLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHK 169
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
VF+ + +K+ W MI + S E +F M+ G + ++ AC
Sbjct: 170 VFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQAC 224
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 201/315 (63%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
++DGY K D+ +A +F M +RDVVSW+++I+G V+ G EA+ VF+ M +
Sbjct: 135 LLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHD 194
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VR N+ T VSVL +CA L G L G+++H Y+ + L++ + T+L+D+Y K G +
Sbjct: 195 GVRANDVTMVSVLGACAHL---GDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAI 251
Query: 118 ERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
A+ VF+++ ++ DV WNA+I LA + +E+L MF +M+ G+ +EIT++++L+
Sbjct: 252 VEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLSLLS 311
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC LV+ F S+ + + P +EHY C+VD+LGRAG L EA ++SMP +P
Sbjct: 312 ACVHGGLVDEAWSFFRSLEAQ-GLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSV 370
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
SVLGALL AC +HG V+L VGR+L+ LQP H GRY+ LSNI+A RW A RK M
Sbjct: 371 SVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVM 430
Query: 296 VEAGIRKIPAYSLIE 310
E G++K+P +S I+
Sbjct: 431 EERGVKKVPGFSEID 445
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-----K 159
AL+D Y K L A RVF M +DV +W+AMI +EAL +F+ M +
Sbjct: 133 NALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAAR 192
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G+RAN++T V+VL ACA + G ++ H L + + +VD+ + G +
Sbjct: 193 HDGVRANDVTMVSVLGACAHLGDLVRGRKM-HRYLEEHGFPLNIRLATSLVDMYAKCGAI 251
Query: 220 SEAKEFMRSMPFE-PDASVLGALLGACKIHG 249
EA E +++P E D + A++G +HG
Sbjct: 252 VEALEVFQAVPVENTDVLIWNAVIGGLAVHG 282
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NGD+ A F+ M +RD +SW +II G+ ++G EA+ +F M + R
Sbjct: 334 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE--R 391
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T+ S LS+CA + L LGKQVHG +++ + ++G AL+ +Y K G ++ A
Sbjct: 392 LNRSTFTSTLSTCAEIA---ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDA 448
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + K+V +WN MI+ A + KEAL++F+ MK+ G+ +++T V VL+AC+
Sbjct: 449 YIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHT 508
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F+SM + + +HY C++DLLGRAG L +A+ M++MPFEPDA+ GA
Sbjct: 509 GLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGA 568
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + + + E++P + G YV+LSN++A RW +R M + G+
Sbjct: 569 LLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGV 628
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 629 KKVPGYSWVE 638
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NG++ A LFE RDV +WT++++G+V+NG EA VF M
Sbjct: 241 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-------- 292
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS + AG V + ++ + +V +I Y + G + +A
Sbjct: 293 -PEKNSVSWNAIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M +D +W A+I+ A + +EAL +F EMK G R N TF + L+ CA
Sbjct: 348 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 407
Query: 181 QLVELGLEL 189
+ELG ++
Sbjct: 408 AALELGKQV 416
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 45/257 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G V+ ++ +A LLF+ M +RDVVSW ++++G+ +NG EA +F M
Sbjct: 117 MISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----- 171
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVH----------------GYILRNEIVLS--VF 102
N ++ +L A V G + +++ GY+ RN +V + +F
Sbjct: 172 -NSISWNGML---AAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 227
Query: 103 ---------MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
+I Y + G L A R+F+ ++DV TW AM+S N EA
Sbjct: 228 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARR 287
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+FD M EK N +++ A++ + + ++ ELF +M + + ++
Sbjct: 288 VFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTMITGY 338
Query: 214 GRAGLLSEAKEFMRSMP 230
+ G +++A+ F MP
Sbjct: 339 AQNGDIAQARNFFDRMP 355
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 53/235 (22%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I +++NG DSA+ LF +M +R +SW ++I+G + N F A +F+ M +LV
Sbjct: 56 ITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK-MPTRDLV-- 112
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
++ ++S C N L A
Sbjct: 113 ---SWNVMISGCVRYRN--------------------------------------LRAAR 131
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+F M +DV +WNAM+S A N KEA +FDEM K N I++ +L A +
Sbjct: 132 LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNG 187
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E LF S +E++ + C++ + L +A+ MP + S
Sbjct: 188 RIEDARRLFESK-ADWELIS----WNCMMGGYVKRNRLVDARGIFDRMPERDEVS 237
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G + A+R+F SM + +WNAMIS SN + A +F++M + L +++ ++
Sbjct: 63 GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDL----VSWNVMI 118
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+ C R + + LF M + +VV + ++ + G + EAKE MP +
Sbjct: 119 SGCVRYRNLRAARLLFDQMPER-DVVS----WNAMLSGYAQNGYVKEAKEIFDEMPCKNS 173
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLE 263
S G +L A +G + E RRL E
Sbjct: 174 ISWNG-MLAAYVQNGRI----EDARRLFE 197
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y G ++ A +F + ++D V WT++I+GFVRN A+ F+ M G VR
Sbjct: 218 MISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN--VR 275
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+C+ L G L +G+ VH Y+ + EI L++F+G ALI++Y + G ++ A
Sbjct: 276 PNEFTIVCVLSACSQL---GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV T+N MIS L+ N + ++A+ +F M + LR +TFV VL AC+
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 392
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+FHSM + V P +EHYGC+VDLLGR G L EA + +R+M PD +LG
Sbjct: 393 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H ++L +V + L + G YV+LS+++A +W A +R M EAG+
Sbjct: 453 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 513 QKEPGCSSIE 522
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 42/286 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ +V +T++I+GFV +G + EAI ++ M+ L P+ S+L
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL--PDNYLMASIL 154
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-- 128
+C + L G++VH L+ + + +++LYGK G L A RVF+ M
Sbjct: 155 KACGSQL---ALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 211
Query: 129 ----------------------------IKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
KD W AMI N AL F M+
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
+ +R NE T V VL+AC++ +E+G HS + KFE+ + ++++ R G +
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSID 330
Query: 221 EAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCH-EVGRRL 261
EA+ M + D ++ ++G A++L VGRRL
Sbjct: 331 EAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRL 375
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H ++RN FM L+ K ++ A R+F+ +V + A+I S+
Sbjct: 68 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ ++ M + + + ++L AC + G E+ HS K
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREV-HSRALKLGFSSNRLVRL 186
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++L G+ G L +A+ MP + AS +
Sbjct: 187 RIMELYGKCGELGDARRVFEEMPEDVVASTV 217
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 195/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY ++GDM+ A+ LF+ M R VVSWT++I+G+ +NG + +A+ +F M + VR
Sbjct: 82 LIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKE-VR 140
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SV S+CA L G L +G+++ Y N ++ ++++ L+++Y + G ++ A
Sbjct: 141 PNEVTIASVFSACAKL---GALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAA 197
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF + +++C+WN+M+ LA + R EAL ++D+M +G+ +++TFV ++ AC
Sbjct: 198 RHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTH 257
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G +LF SM F +VP +EHYGC+VDLLGRAG L EA + ++SMP +PD+ + G
Sbjct: 258 GGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWG 317
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC H V+ L +++P + G YV+L NI+A +RW+ LRK M
Sbjct: 318 TLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQ 377
Query: 300 IRKIPAYSLIE 310
I K YS+IE
Sbjct: 378 ITKAAGYSVIE 388
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 35/158 (22%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ + +CA + L GK +H + +++ V+ TAL+D+Y K+G L A
Sbjct: 8 PNELTFTFLFPACASFYS---LLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLA 64
Query: 121 IRVFKSMVIKDVCTWNA-------------------------------MISSLASNSREK 149
+VF M ++D+ TWN+ MIS + N
Sbjct: 65 RQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYT 124
Query: 150 EALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELG 186
+AL MF +M K+K +R NE+T +V +ACA+ +E+G
Sbjct: 125 KALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG 162
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 188/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+ SA +F+ M RDV++W ++I+G+ +NG EAI +F M + V
Sbjct: 259 LISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAM--KEDCVT 316
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T +VLS+CA + G L LGKQ+ Y + +F+ TALID+Y K G L A
Sbjct: 317 ENKITLTAVLSACATI---GALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVFK M K+ +WNAMIS+LAS+ + KEAL +F M ++G R N+ITFV +L+AC
Sbjct: 374 QRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACV 433
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV G LF M F +VP +EHY C+VDLL RAG L EA + + MP +PD L
Sbjct: 434 HAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTL 493
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+ VD+ V R +LE+ P + G Y++ S I+A L W + +R M +
Sbjct: 494 GALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQK 553
Query: 299 GIRKIPAYSLIE 310
GI K P S IE
Sbjct: 554 GITKTPGCSWIE 565
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + A +F+ + +RD+VSW S+I G+ + GC EA+ VF M G +
Sbjct: 157 LITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEM-GRRDGFE 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VSVL +C L G L LG+ V G+++ + L+ ++G+ALI +Y K G L A
Sbjct: 216 PDEMSLVSVLGACGEL---GDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSA 272
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV TWNA+IS A N EA+ +F MKE + N+IT AVL+ACA
Sbjct: 273 RRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATI 332
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG ++ + S G + + ++D+ + G L+ A+ + MP + +AS
Sbjct: 333 GALDLGKQIDEYASQRGFQHDIFVAT---ALIDMYAKCGSLASAQRVFKEMPQKNEAS-W 388
Query: 239 GALLGACKIHG 249
A++ A HG
Sbjct: 389 NAMISALASHG 399
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
SCA L L + H + + + +LI +Y + G + A +VF + +D
Sbjct: 125 SCANLAV---LSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRD 181
Query: 132 VCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELG 186
+ +WN+MI+ A +EA+ +F EM + G +E++ V+VL AC +ELG
Sbjct: 182 LVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELG 237
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 191/309 (61%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +K GD + A LF M +R+V SWTS+I G+V+ G EAI +F M V+
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKM--EEAGVK 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T V+VL++CA L G L LG ++H Y R+ +V + LID+Y K GCLE A
Sbjct: 258 CNEVTVVAVLAACADL---GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M + V +W+AMI LA + R +EAL +F +M + G+ N +TF+ +L AC+
Sbjct: 315 CKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHM 374
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F SM + ++P +EHYGC+VDLL RAGLL EA EF+ +MP +P+ V GA
Sbjct: 375 GLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGA 434
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V++ E + LLEL P + G YVVLSNI+A RW +RK M + +
Sbjct: 435 LLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV 494
Query: 301 RKIPAYSLI 309
+K P +S I
Sbjct: 495 KKTPGWSSI 503
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 38/261 (14%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K + W S + +AI +F + V P+ T SVL +C L++ L
Sbjct: 90 KPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD--VCPDTFTCSSVLRACLNLLD---L 144
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
G+ +HG + + ++++ ++ LY G + A +F+ M +DV TWN MI+ L
Sbjct: 145 SNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 143 ASN-------------------------------SREKEALVMFDEMKEKGLRANEITFV 171
+ KEA+ +F +M+E G++ NE+T V
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
AVL ACA ++LG+ + H + + ++D+ + G L EA + M
Sbjct: 265 AVLAACADLGALDLGMRI-HEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME- 322
Query: 232 EPDASVLGALLGACKIHGAVD 252
E A++G +HG +
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAE 343
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 201/315 (63%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
++DGY K D+ +A +F M +RDVVSW+++I+G V+ G EA+ VF+ M +
Sbjct: 29 LLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHD 88
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VR N+ T VSVL +CA L G L G+++H Y+ + L++ + T+L+D+Y K G +
Sbjct: 89 GVRANDVTMVSVLGACAHL---GDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAI 145
Query: 118 ERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
A+ VF+++ ++ DV WNA+I LA + +E+L MF +M+ G+ +EIT++++L+
Sbjct: 146 VEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVPDEITYLSLLS 205
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC LV+ F S+ + + P +EHY C+VD+LGRAG L EA ++SMP +P
Sbjct: 206 ACVHGGLVDEAWSFFRSLEAQ-GLRPHVEHYACLVDVLGRAGRLEEAYGVVKSMPMKPSV 264
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
SVLGALL AC +HG V+L VGR+L+ LQP H GRY+ LSNI+A RW A RK M
Sbjct: 265 SVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARRWQEAKKARKVM 324
Query: 296 VEAGIRKIPAYSLIE 310
E G++K+P +S I+
Sbjct: 325 EERGVKKVPGFSEID 339
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-----K 159
AL+D Y K L A RVF M +DV +W+AMI +EAL +F+ M +
Sbjct: 27 NALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAAR 86
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G+RAN++T V+VL ACA + G ++ H L + + +VD+ + G +
Sbjct: 87 HDGVRANDVTMVSVLGACAHLGDLVRGRKM-HRYLEEHGFPLNIRLATSLVDMYAKCGAI 145
Query: 220 SEAKEFMRSMPFE-PDASVLGALLGACKIHG 249
EA E +++P E D + A++G +HG
Sbjct: 146 VEALEVFQAVPVENTDVLIWNAVIGGLAVHG 176
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 191/309 (61%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +K GD + A LF M +R+V SWTS+I G+V+ G EAI +F M V+
Sbjct: 200 MIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKM--EEAGVK 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T V+VL++CA L G L LG ++H Y R+ +V + LID+Y K GCLE A
Sbjct: 258 CNEVTVVAVLAACADL---GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M + V +W+AMI LA + R +EAL +F +M + G+ N +TF+ +L AC+
Sbjct: 315 CKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHM 374
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F SM + ++P +EHYGC+VDLL RAGLL EA EF+ +MP +P+ V GA
Sbjct: 375 GLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGA 434
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V++ E + LLEL P + G YVVLSNI+A RW +RK M + +
Sbjct: 435 LLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV 494
Query: 301 RKIPAYSLI 309
+K P +S I
Sbjct: 495 KKTPGWSSI 503
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 38/261 (14%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K + W S + +AI +F + V P+ T SVL +C L++ L
Sbjct: 90 KPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYD--VCPDTFTCSSVLRACLNLLD---L 144
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
G+ +HG + + ++++ ++ LY G + A +F+ M +DV TWN MI+ L
Sbjct: 145 SNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 143 ASN-------------------------------SREKEALVMFDEMKEKGLRANEITFV 171
+ KEA+ +F +M+E G++ NE+T V
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
AVL ACA ++LG+ + H + + ++D+ + G L EA + M
Sbjct: 265 AVLAACADLGALDLGMRI-HEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME- 322
Query: 232 EPDASVLGALLGACKIHGAVD 252
E A++G +HG +
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAE 343
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NGD+ A F+ M +RD +SW +II G+ ++G EA+ +F M + R
Sbjct: 253 MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE--R 310
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T+ S LS+CA + L LGKQVHG +++ + ++G AL+ +Y K G ++ A
Sbjct: 311 LNRSTFTSTLSTCAEIA---ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDA 367
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + K+V +WN MI+ A + KEAL++F+ MK+ G+ +++T V VL+AC+
Sbjct: 368 YIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHT 427
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F+SM + + +HY C++DLLGRAG L +A+ M++MPFEPDA+ GA
Sbjct: 428 GLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGA 487
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + + + E++P + G YV+LSN++A RW +R M + G+
Sbjct: 488 LLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGV 547
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 548 KKVPGYSWVE 557
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +NG++ A LFE RDV +WT++++G+V+NG EA VF M
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-------- 211
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS + AG V + ++ + +V +I Y + G + +A
Sbjct: 212 -PEKNSVSWNAIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQA 266
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M +D +W A+I+ A + +EAL +F EMK G R N TF + L+ CA
Sbjct: 267 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 326
Query: 181 QLVELGLEL 189
+ELG ++
Sbjct: 327 AALELGKQV 335
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 45/254 (17%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
G V+ ++ +A LLF+ M +RDVVSW ++++G+ +NG EA +F M N
Sbjct: 39 GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK------NS 92
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVH----------------GYILRNEIVLS--VF--- 102
++ +L A V G + +++ GY+ RN +V + +F
Sbjct: 93 ISWNGML---AAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM 149
Query: 103 ------MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
+I Y + G L A R+F+ ++DV TW AM+S N EA +FD
Sbjct: 150 PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD 209
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
M EK N +++ A++ + + ++ ELF +M + + ++ +
Sbjct: 210 GMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTMITGYAQN 260
Query: 217 GLLSEAKEFMRSMP 230
G +++A+ F MP
Sbjct: 261 GDIAQARNFFDRMP 274
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G ++SA+ LF M ++DVV W ++I GFV+ EA+ +F M + V
Sbjct: 328 MVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS--VA 385
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V+ LS+C+ L G L +G +H Y+ ++ + ++V +GTAL+D+Y K G +++A
Sbjct: 386 PDKITVVNCLSACSQL---GALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKA 442
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I+VF+ M ++ TW A+I LA + + A+ F EM GL +EITF+ VL+AC
Sbjct: 443 IQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHG 502
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+ M K+ + P ++HY C+VDLLGRAG L EA+E +RSMPFEPDA V GA
Sbjct: 503 GLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGA 562
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L +IHG V + +LLEL P G YV+L+N++ W +A +RK M E G+
Sbjct: 563 LFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGV 622
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 623 EKTPGCSSIE 632
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 37/256 (14%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V G++ +A LF+ RD+VSW SIING+VR G EA ++ MG +N V P+E T
Sbjct: 201 VSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK-MGELN-VMPDEVT 258
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL--------------- 110
+ V+S+ A L N L LG+++H I + L+V + AL+D+
Sbjct: 259 MIGVVSASAQLEN---LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFE 315
Query: 111 ----------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM 154
Y K G LE A+R+F M KDV WNA+I R KEAL +
Sbjct: 316 NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALAL 375
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
F EM+ + ++IT V L+AC++ +++G+ + H + K + + +VD+
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM-HHYVDKHNLTMNVALGTALVDMYA 434
Query: 215 RAGLLSEAKEFMRSMP 230
+ G + +A + MP
Sbjct: 435 KCGNIKKAIQVFEEMP 450
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 12/256 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++D + N + SW I G+V + A+ +++NM+ + + P+ TY +
Sbjct: 103 NLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI-PDNYTYPLL 161
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
CAG + ++ G++++ +F+ A+I + G L A ++F +
Sbjct: 162 FKVCAGFSLS---WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN++I+ EA ++ +M E + +E+T + V++A A+ + + LG +L
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 190 FHSM--LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK- 246
S+ +G VP+ ++D+ + + AK +M + S ++G K
Sbjct: 279 HQSIEEMGLNLTVPLA---NALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 247 --IHGAVDLCHEVGRR 260
+ AV L +E+ +
Sbjct: 336 GLLESAVRLFNEMPEK 351
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG ++NG++ AI+LF+ M +RD +SWTS+I GFV+ GCF +A+ F+ M + V
Sbjct: 164 MIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREM--QLAGVE 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +SVL++CA L G L LG ++ ++++ + ++ + +LID+Y + GC+ A
Sbjct: 222 PDYVTIISVLAACANL---GALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLA 278
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M + + +WN+MI A N +EAL F+ M+++G R + ++F LTAC+ +
Sbjct: 279 RQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHS 338
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+ F M ++ P +EHYGC+VDL RAG L +A + +MP +P+ VLG+
Sbjct: 339 GLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGS 398
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V L + + L E+ P YV+LSNI+A + RW+ A+ +RK M GI
Sbjct: 399 LLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGI 458
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 459 HKKPGFSSIE 468
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+VSWTS I RNG EA F M + VRPN T++++LS+C EG L G
Sbjct: 54 IVSWTSSIALHCRNGQLPEAAAEFSRM--QIAGVRPNHITFLTLLSACTDFPLEG-LRFG 110
Query: 86 KQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+H Y+ + + +V +GTAL+D+Y K G L+ A +F M +++ +WN MI
Sbjct: 111 GSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMR 170
Query: 145 NSREKEALVMFDEMKEK-------------------------------GLRANEITFVAV 173
N EA+V+FD+M E+ G+ + +T ++V
Sbjct: 171 NGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISV 230
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L ACA + LGL + + + K + ++ ++D+ R G + A++ MP
Sbjct: 231 LAACANLGALGLGLWI-NRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
I + +W + I+ N + EA F M+ G+R N ITF+ +L+AC L
Sbjct: 51 IDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL 104
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G ++SA+ LF M ++DVV W ++I GFV+ EA+ +F M + V
Sbjct: 328 MVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS--VA 385
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V+ LS+C+ L G L +G +H Y+ ++ + ++V +GTAL+D+Y K G +++A
Sbjct: 386 PDKITVVNCLSACSQL---GALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKA 442
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I+VF+ M ++ TW A+I LA + + A+ F EM GL +EITF+ VL+AC
Sbjct: 443 IQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHG 502
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+ M K+ + P ++HY C+VDLLGRAG L EA+E +RSMPFEPDA V GA
Sbjct: 503 GLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGA 562
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L +IHG V + +LLEL P G YV+L+N++ W +A +RK M E G+
Sbjct: 563 LFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGV 622
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 623 EKTPGCSSIE 632
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 37/256 (14%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V G++ +A LF+ RD+VSW SIING+VR G EA ++ MG +N V P+E T
Sbjct: 201 VSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK-MGELN-VMPDEVT 258
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL--------------- 110
+ V+S+ A L N L LG+++H I + L+V + AL+D+
Sbjct: 259 MIGVVSASAQLEN---LALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFE 315
Query: 111 ----------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM 154
Y K G LE A+R+F M KDV WNA+I R KEAL +
Sbjct: 316 NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALAL 375
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
F EM+ + ++IT V L+AC++ +++G+ + H + K + + +VD+
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWM-HHYVDKHNLTMNVALGTALVDMYA 434
Query: 215 RAGLLSEAKEFMRSMP 230
+ G + +A + MP
Sbjct: 435 KCGNIKKAIQVFEEMP 450
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 120/256 (46%), Gaps = 12/256 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++D + N +V SW I G+V + A+ +++NM+ + + P+ TY +
Sbjct: 103 NLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI-PDNYTYPLL 161
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
CAG + ++ G++++ +F+ A+I + G L A ++F +
Sbjct: 162 FKVCAGFSLS---WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN++I+ EA ++ +M E + +E+T + V++A A+ + + LG +L
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 190 FHSM--LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK- 246
S+ +G VP+ ++D+ + + AK +M + S ++G K
Sbjct: 279 HQSIEEMGLNLTVPLA---NALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 247 --IHGAVDLCHEVGRR 260
+ AV L +E+ +
Sbjct: 336 GLLESAVRLFNEMPEK 351
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 205/315 (65%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVKNG+M++A LF+ ++DVV+W ++I G+V G +A+ +F+ M NV
Sbjct: 216 MITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMR-NVGEC- 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV---LSVFMGTALIDLYGKVGCL 117
P+E T +S+LS+CA L G L +G+++H I +E+ LSV +G AL+D+Y K G +
Sbjct: 274 PDEVTMLSLLSACADL---GDLQVGRKLHCSI--SEMTRGDLSVLLGNALVDMYAKCGSI 328
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTA 176
E A++VFK M KDV TWN++I LA + +E++ +F EM+ K ++ NEITFV V+ A
Sbjct: 329 EIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVA 388
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A VE G F M ++++ P M H+GC+VDLLGRAGLLSEA E + M EP+A
Sbjct: 389 CSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAI 448
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LLGAC++HG V+L RLL+L+ G YV+LSNI+A W+ A ++RK M
Sbjct: 449 IWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMD 508
Query: 297 EAGIRKIPAYSLIEA 311
+ G+RK SLIEA
Sbjct: 509 DGGVRKEAGRSLIEA 523
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 132/307 (42%), Gaps = 68/307 (22%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G ++ A +F + + D+ W +++ G ++ + + ++ M V+P++ T+
Sbjct: 60 SGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRG--VKPDKFTFS 117
Query: 68 SVLSSCAGL--------VNEGGLYLGKQVHGYILRNEIVL-------------------- 99
+L C L V+ L G +V+ ++ RN ++
Sbjct: 118 FLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFV-RNTLIYFHSNCGDLVIARSIFYDLPE 176
Query: 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN------------- 145
SV +AL Y + G L A ++F M +KD+ +WN MI+ N
Sbjct: 177 RSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEA 236
Query: 146 ------------------SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+++AL MF+EM+ G +E+T +++L+ACA +++G
Sbjct: 237 PEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGR 296
Query: 188 ELFHSM--LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
+L S+ + + ++ ++ + +VD+ + G + A + + M E D + +++G
Sbjct: 297 KLHCSISEMTRGDLSVLLGN--ALVDMYAKCGSIEIALQVFKKMR-EKDVTTWNSVIGGL 353
Query: 246 KIHGAVD 252
HG +
Sbjct: 354 AFHGHAE 360
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 192/310 (61%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G++D A +LF+ M +RD +SW ++I+G+ ++G EA+ +F M + ++
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL- 403
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + LSSCA + L LGKQ+HG +++ G AL+ +YGK G +E A
Sbjct: 404 -NRSALACALSSCAEIA---ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KD+ +WN MI+ A + KEAL +F+ MK ++ +++T V VL+AC+
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHT 518
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+E F+SM + + +HY C++DLLGRAG L EA M+SMPF PDA+ GA
Sbjct: 519 GLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + ++ E++P + G YV+LSN++A RW ++R M + G+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 639 KKVPGYSWVE 648
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 45/257 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYVKNG++ +A LF M ++DVVSW ++++GF +NG EA +F M LV+
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-----LVK 182
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMG--------------- 104
NE ++ +LS+ V G + +++ + EIV + MG
Sbjct: 183 -NEISWNGLLSA---YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238
Query: 105 -----------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
+I Y + G L A R+F+ + I+DV W AM+S N EA
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+F+EM EK NE+++ A++ ++Q +E ELF M + + +V
Sbjct: 299 IFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGY 349
Query: 214 GRAGLLSEAKEFMRSMP 230
+ G + +AK MP
Sbjct: 350 AQCGNIDQAKILFDEMP 366
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y++ G +SA+ +F M +R V++ ++I+G++ N F A VF+ M P
Sbjct: 67 ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM--------P 118
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ +S +G V G L + + + ++V A++ + + G +E A
Sbjct: 119 DR-DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV----SWNAMLSGFAQNGFVEEAR 173
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
++F M++K+ +WN ++S+ N R ++A +FD + + +++ ++ R +
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI----VSWNCLMGGYVRKK 229
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--GLLSEAKEFMRSMPFEPDASVLG 239
++ LF M P+ + + + G A GLLSEA+ +P D
Sbjct: 230 RLDDARSLFDRM-------PVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWT 281
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKH 268
A++ +G +D E R E+ K+
Sbjct: 282 AMVSGFVQNGMLD---EATRIFEEMPEKN 307
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 22/210 (10%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
++ D+V W I+ ++R G A+ VF M R + TY +++S G ++
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVFNGMR------RRSTVTYNAMIS---GYLSNN 105
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
++V + +++ ++ Y K G L A +F M KDV +WNAM+S
Sbjct: 106 KFDCARKVFEKMPDRDLI----SWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
A N +EA +FD+M L NEI++ +L+A + +E LF S + +E+V
Sbjct: 162 GFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKM-DWEIV 216
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ C++ R L +A+ MP
Sbjct: 217 S----WNCLMGGYVRKKRLDDARSLFDRMP 242
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 121/266 (45%), Gaps = 25/266 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YV+NG ++ A LF++ + ++VSW ++ G+VR +A +F M VR
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM-----PVR 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + G G L ++ + + VF TA++ + + G L+ A
Sbjct: 245 DKISWNIMI----TGYAQNGLLSEARR----LFEELPIRDVFAWTAMVSGFVQNGMLDEA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F+ M K+ +WNAMI+ + + ++A +FD+M + N ++ ++T A+
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMVTGYAQC 352
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP---DASV 237
++ LF M + + + ++ ++G EA M + + S
Sbjct: 353 GNIDQAKILFDEMPQRDCI-----SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
L L +C A++L ++ RL++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVK 433
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 201/313 (64%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY G+++ A LFE RDVV WT++ING+V+ F EA+ +F+ M + V+
Sbjct: 310 MVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREM--QIRKVK 367
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ VS+L+ CA G + GK +H +I N I + +GTALI++Y K G +E+A
Sbjct: 368 PDKFIVVSLLTGCA---QTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKA 424
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + +KD +W ++I LA N + +AL +F +MK+ G+R ++ITF+ VL+AC+
Sbjct: 425 LEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHG 484
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA---SV 237
LVE G + F+SM ++++ P +EHYGC+VDLLGRAGLL+EA+E ++ +P E A +
Sbjct: 485 GLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPL 544
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL AC+I+G V++ V ++L++ + + +L+NI+A +RW T +R+ M +
Sbjct: 545 YGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKD 604
Query: 298 AGIRKIPAYSLIE 310
G++K P S IE
Sbjct: 605 LGVKKTPGCSSIE 617
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 39/275 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + D +LF+ M RDV+SW +I+G+V+ F +AI VF M L+
Sbjct: 178 LIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM- 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS LS+C L L LGK++H Y+ R+ + + +G AL+D+Y K GCL A
Sbjct: 237 PDEATVVSTLSACTALKR---LELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIA 292
Query: 121 IRVFKSM-------------------------------VIKDVCTWNAMISSLASNSREK 149
VF+ M I+DV W AMI+ +R
Sbjct: 293 RAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFD 352
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-C 208
EA+ +F EM+ + ++ ++ V++LT CA+ +E G + H + + +PI G
Sbjct: 353 EAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG-KWIHEFIDE-NRIPIDAVVGTA 410
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
++++ + G + +A E + + AS + G
Sbjct: 411 LIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICG 445
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 112/224 (50%), Gaps = 8/224 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
NG+++ A +F+ + ++ + II F + G + + +F + + + P+ TY
Sbjct: 84 NGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKL--REDGLWPDNFTYP 141
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
V + L G + +++ G + + + ++ +LID+Y ++ + +F M
Sbjct: 142 FVFKAIGYL---GEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEM 198
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACARAQLVELG 186
+DV +WN MIS R ++A+ +F M+E+ GL +E T V+ L+AC + +ELG
Sbjct: 199 PDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELG 258
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ H + + PI+ + ++D+ + G LS A+ MP
Sbjct: 259 KKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMP 300
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 193/301 (64%), Gaps = 6/301 (1%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+SA +FE M ++D+V+W S+INGF NG EA+ ++K M V P+ T VS+L
Sbjct: 57 FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRM--GSEGVEPDGFTMVSLL 114
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI- 129
S+CA L L LG++ H Y+++ + ++ AL+DLY K G + A ++F M I
Sbjct: 115 SACAELAT---LVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIE 171
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
++V +W ++I LA N KEAL F +M+ +GL +EITFV VL AC+ +V G E
Sbjct: 172 RNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEY 231
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
F M ++++VP +EHYGC+VDLLGRAGLL EA ++++ MP +P+A + LLGAC IHG
Sbjct: 232 FKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG 291
Query: 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
+ L RLL+L+PK G YV+LSN++A +RW+ ++R+ M+ G+RK P YSL+
Sbjct: 292 HLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLV 351
Query: 310 E 310
E
Sbjct: 352 E 352
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 198/314 (63%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--VVSWTSIINGFVRNGCFGEAICVFKNM-MGNVN 57
+I YV ++ A +F+NM +RD VSW ++I +V++ EA +F M + NV
Sbjct: 135 LIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV 194
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L ++ S+LS+C GL G L GK +HGYI ++ I L + T +ID+Y K GCL
Sbjct: 195 L---DKFVAASMLSACTGL---GALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCL 248
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E+A VF + K + +WN MI LA + + + A+ +F EM+ + + + ITFV VL+AC
Sbjct: 249 EKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSAC 308
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A + LVE G F M + P MEH+GC+VDLLGRAGLL EA++ + MP PDA V
Sbjct: 309 AHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGV 368
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LGAL+GAC+IHG +L ++G++++EL+P + GRYV+L+N++A RW +RK M +
Sbjct: 369 LGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMND 428
Query: 298 AGIRKIPAYSLIEA 311
G++K P +S+IE+
Sbjct: 429 RGVKKAPGFSMIES 442
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 13/235 (5%)
Query: 34 NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL 93
+G++R I ++ M+ V PN+ TY ++ +C + + GKQ+H ++L
Sbjct: 67 SGYLRWQLARNCIFMYSRMLHKS--VSPNKFTYPPLIRAC---CIDYAIEEGKQIHAHVL 121
Query: 94 RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD--VCTWNAMISSLASNSREKEA 151
+ F LI +Y LE+A RVF +M +D +WNAMI++ ++R EA
Sbjct: 122 KFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEA 181
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
+FD M+ + + ++ ++L+AC +E G + H + K + + V+D
Sbjct: 182 FALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVID 240
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLL 262
+ + G L +A E +P + S ++G +HG A++L E+ R ++
Sbjct: 241 MYCKCGCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMV 294
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K G ++ A LF+ M R +V+W ++I G+V NG + + +F+ M+ V+
Sbjct: 203 MITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG--VK 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + SVL C+ L L LGKQVH + + + GT+L+ +Y K G L+ A
Sbjct: 261 PNALSLTSVLLGCSNL---SALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV WNAMIS A + K+AL +FDEMK++GL+ + ITFVAVL AC A
Sbjct: 318 WELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+LG++ F++M F + EHY C+VDLLGRAG LSEA + ++SMPF+P ++ G
Sbjct: 378 GLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGT 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++L + LLEL P YV L+N++A RW+ +R++M + +
Sbjct: 438 LLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNV 497
Query: 301 RKIPAYSLIE 310
KIP YS IE
Sbjct: 498 VKIPGYSWIE 507
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 133/301 (44%), Gaps = 54/301 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLV 59
+I YV+ GD+DSA+ +FE+M + V+W SI+ F + G F A +F+ + N V
Sbjct: 47 LIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI-PQPNTV 105
Query: 60 RPN--------------------------EATYVSVLSSCA--GLVNEGG---------- 81
N A++ +++S+ A GL+ E
Sbjct: 106 SYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKN 165
Query: 82 -LYLGKQVHGYILRNEI-----------VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+ V GY+ ++ + SV TA+I Y K G +E A R+F+ M +
Sbjct: 166 CVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSM 225
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+ + TWNAMI+ N R ++ L +F M E G++ N ++ +VL C+ ++LG ++
Sbjct: 226 RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQV 285
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
H ++ K + +V + + G L +A E +P D A++ HG
Sbjct: 286 -HQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWNAMISGYAQHG 343
Query: 250 A 250
A
Sbjct: 344 A 344
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
Y+ H + N V++ LI Y + G ++ A+RVF+ M +K TWN+++++
Sbjct: 26 YVSSHTHQHEFNNNNVIA---SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAF 82
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
A E ++ EK + N +++ ++ AC LG+ H G F+ +P+
Sbjct: 83 AKKPGHFE---YARQLFEKIPQPNTVSY-NIMLAC---HWHHLGV---HDARGFFDSMPL 132
Query: 203 ME--HYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + ++ L + GL+ EA+ +MP
Sbjct: 133 KDVASWNTMISALAQVGLMGEARRLFSAMP 162
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+M+ A +F+ M ++D+VSW ++I G+ NG EAI +F M V+
Sbjct: 254 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQREN--VK 311
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V VLS+CA L G L LG+ V G + RNE + + +GTALIDLY K G + RA
Sbjct: 312 PDCYTVVGVLSACARL---GALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRA 368
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M KD WNA+IS LA N K + +F ++++ G++ + TF+ +L C A
Sbjct: 369 WEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHA 428
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM F + P +EHYGC+VDLLGRAGLL EA + +R+MP E +A V GA
Sbjct: 429 GLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGA 488
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH L ++L+EL+P + G YV+LSNI++ +W+ A +R +M E I
Sbjct: 489 LLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRI 548
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 549 QKPPGCSWIE 558
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 147/251 (58%), Gaps = 11/251 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A +F+++ ++VVSWT+II+G++ G F EAI +F+ ++ +NL P+
Sbjct: 157 YAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL-EMNLA-PDSF 214
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VLS+C L G L G+ +H I+ +V +VF+GT+L+D+Y K G +E+A VF
Sbjct: 215 TIVRVLSACTQL---GDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVF 271
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD+ +W AMI A N KEA+ +F +M+ + ++ + T V VL+ACAR +E
Sbjct: 272 DGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALE 331
Query: 185 LGLELFHSMLGKFEVV--PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
LG E ++ + E + P++ ++DL + G +S A E + M E D V A++
Sbjct: 332 LG-EWVSGLVDRNEFLYNPVLG--TALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAII 387
Query: 243 GACKIHGAVDL 253
++G V +
Sbjct: 388 SGLAMNGYVKI 398
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 11/254 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D + LF + + ++ W ++I G V N CF +AI F +M + + PN T+ V
Sbjct: 61 DTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAI-EFYGLMRSEGFL-PNNFTFPFV 118
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L +CA L++ L LG ++H +++ VF+ T+L+ LY K G LE A +VF +
Sbjct: 119 LKACARLLD---LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPD 175
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
K+V +W A+IS + +EA+ MF + E L + T V VL+AC + + G E
Sbjct: 176 KNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EW 234
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
H + + +V + +VD+ + G + +A+ MP E D GA++ ++G
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQGYALNG 293
Query: 250 ----AVDLCHEVGR 259
A+DL ++ R
Sbjct: 294 LPKEAIDLFLQMQR 307
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G MD A LF+ M ++DVVSWT++I+G ++ G F EA+ +F NM+ +
Sbjct: 174 MLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKG--MS 231
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T S L++CA LV L G+ +H YI +N I ++ + LID+Y K G LE A
Sbjct: 232 PNEYTLASSLAACANLV---ALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFA 288
Query: 121 IRVFKS--MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F S + + V WNAMI A + + KEA+ +F++MK + + N++TFVA+L AC+
Sbjct: 289 SKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACS 348
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
VE G F SM + V P +EHYGC+VDLLGRAG L EA+E + SM PD ++
Sbjct: 349 HGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIW 408
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL ACKIH ++ VG+ + EL P H G +V+L+NI++ WN A LR+ + E+
Sbjct: 409 GALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAES 468
Query: 299 GIRKIPAYSLIE 310
G +K P S IE
Sbjct: 469 GKKKTPGCSSIE 480
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 9/184 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFV-RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
A ++F++ + D+ + +II ++ F++++ LV PN+ ++
Sbjct: 53 AHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLV-PNQYSFAFAFKG 111
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
C V G+ G+QV + ++ + ++F+ ALI +Y + + A +VF +D+
Sbjct: 112 CGSGV---GVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDM 168
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
+WN M+S A + EA +FDEM EK + +++ +++ C + L++FH+
Sbjct: 169 YSWNIMLSGYARLGKMDEARQLFDEMPEKDV----VSWTTMISGCLQVGYFMEALDIFHN 224
Query: 193 MLGK 196
ML K
Sbjct: 225 MLAK 228
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 199/310 (64%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY + G+++ A LF M +D++SWT++ING+ RN + EAI VF MM +
Sbjct: 979 LIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEG--II 1036
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L +GK+VH Y ++N VL V++G+AL+D+Y K G LERA
Sbjct: 1037 PDEVTMSTVISACAHL---GVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERA 1093
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ K++ WN++I LA++ +EAL MF +M+ + ++ N +TFV+V TAC A
Sbjct: 1094 LLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHA 1153
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++ SM+ + +V +EHYGC+V L +AGL+ EA E + SM FEP+A + GA
Sbjct: 1154 GLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGA 1213
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH +++ +L+ L+P + G Y +L +++A RW ++R M E GI
Sbjct: 1214 LLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGI 1273
Query: 301 RKI-PAYSLI 309
KI P S I
Sbjct: 1274 EKICPGTSSI 1283
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 23/252 (9%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ M K +V + ++I GFV ++ + M+ + V P+ TY S++
Sbjct: 828 LDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDS--VSPSSYTYSSLV 885
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ A G+ + +I + V + T LI Y G + A +VF M +
Sbjct: 886 QASAFASG-----FGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPER 940
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
D TW M+S+ A + ++M EK NE T+ ++ R +EL LF
Sbjct: 941 DDVTWTTMVSAYRQVLDMDSANSLANQMPEK----NEATWNCLIDGYTRLGNLELAESLF 996
Query: 191 HSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGAC 245
+ M P+ + + +++ R EA M E PD + ++ AC
Sbjct: 997 NQM-------PVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISAC 1049
Query: 246 KIHGAVDLCHEV 257
G +++ EV
Sbjct: 1050 AHLGVLEIGKEV 1061
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ M KRD VSW ++I G+ ++G EA+ +F M R
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG--R 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +++ S LS+CA +V L LGKQ+HG +++ F+G AL+ +Y K G +E A
Sbjct: 407 LNRSSFSSALSTCADVV---ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD+ +WN MI+ + + + AL F+ MK +GL+ ++ T VAVL+AC+
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F++M + V+P +HY C+VDLLGRAGLL +A M++MPFEPDA++ G
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++HG +L ++ ++P++ G YV+LSN++A RW LR M + G+
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 644 KKVPGYSWIE 653
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 43/269 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV+N ++ A LFE M +RDV SW ++++G+ +NGC +A VF M
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM------PE 185
Query: 61 PNEATYVSVLSSC---AGLVNEGGLYLGKQ----------VHGYILRNEI---------- 97
N+ ++ ++LS+ + + L+ ++ + G++ + +I
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 98 -VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
V V +I Y + G ++ A ++F ++DV TW AM+S N +EA +FD
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLG 214
+M E+ NE+++ A+L + + +E+ EL F+V+P + + ++
Sbjct: 306 KMPER----NEVSWNAMLAGYVQGERMEMAKEL-------FDVMPCRNVSTWNTMITGYA 354
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G +SEAK MP S + G
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 112/290 (38%), Gaps = 87/290 (30%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY++N ++ A LF+ M +R+ VSW +++ G+V+ GE + + K + V
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ----GERMEMAKELFD----VM 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P RN V +I Y + G + A
Sbjct: 339 P-------------------------------CRN-----VSTWNTMITGYAQCGKISEA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D +W AMI+ + + EAL +F +M+ +G R N +F + L+ CA
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 181 QLVELGLE-----------------------------------LFHSMLGKFEVVPIMEH 205
+ELG + LF M GK ++V
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVS---- 477
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVD 252
+ ++ R G A F SM E PD + + A+L AC G VD
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D+ W I+ ++R G EA+ VFK M R + +Y ++S G + G L
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRM------PRWSSVSYNGMIS---GYLRNGEFEL 113
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+++ + ++V +I Y + L +A +F+ M +DVC+WN M+S A
Sbjct: 114 ARKLFDEMPERDLV----SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ 169
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +A +FD M EK N++++ A+L+A + +E LF S + +V
Sbjct: 170 NGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSR-ENWALVS--- 221
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
+ C++ + + EA++F SM
Sbjct: 222 -WNCLLGGFVKKKKIVEARQFFDSM 245
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y++ G + A+ +F+ M + VS+ +I+G++RNG F A +F M
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM--------- 121
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
E VS G V L +++ + ++ ++ Y + GC++ A
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC----SWNTMLSGYAQNGCVDDAR 177
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M K+ +WNA++S+ NS+ +EA ++F + L +++ +L + +
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKK 233
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+ + F SM + +VV + ++ ++G + EA++ P +
Sbjct: 234 KIVEARQFFDSMNVR-DVVS----WNTIITGYAQSGKIDEARQLFDESPVQ 279
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
I Y + G A+RVFK M ++N MIS N + A +FDEM E+ L
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL---- 126
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEF 225
+++ ++ R + + EL FE++P + + ++ + G + +A+
Sbjct: 127 VSWNVMIKGYVRNRNLGKAREL-------FEIMPERDVCSWNTMLSGYAQNGCVDDARSV 179
Query: 226 MRSMPFEPDASVLGALLGA 244
MP + D S ALL A
Sbjct: 180 FDRMPEKNDVS-WNALLSA 197
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG V+ GD+ SA LF+ M +R VVSW +I+G+ +NG F EAI +F+ M + +
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN--ID 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + A + G L LGK +H Y +N+I + +G+AL+D+Y K G ++ A
Sbjct: 268 PNYVTLVSVLPAIARI---GALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+++ ++ TW+A+I + A + R ++A++ F M + G+ N++ ++ +L+AC+ A
Sbjct: 325 LQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHA 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGRAG L EA+E +R+MP EPD + A
Sbjct: 385 GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKA 444
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK+H + + V L+EL P G YV LSN++A L W +R M I
Sbjct: 445 LLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDI 504
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 505 RKDPGCSWIE 514
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 60/292 (20%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNG---CFGEAICVFKNMMGNVNLVRPNEATY 66
D+D A +F M + + W +I+ EA+ +F M+ + V+PN T+
Sbjct: 67 DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCD-GRVKPNRFTF 125
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS--------------------- 100
SVL +CA L GKQ+HG I++ +E V+S
Sbjct: 126 PSVLKACA---RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCK 182
Query: 101 ---------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
V + +ID ++G ++ A +F M + V +WN MI
Sbjct: 183 NVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMI 242
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG--KF 197
S A N EA+ +F EM+ + N +T V+VL A AR +ELG + H G K
Sbjct: 243 SGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKI 301
Query: 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
E+ ++ +VD+ + G + EA + ++P + +A A++GA +HG
Sbjct: 302 EIDDVLG--SALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHG 350
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D + +F M +D V+W S+I+ F +NG EA+ +F+ M+ + V+
Sbjct: 491 LMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMI--MEGVK 548
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T S+LS+CAGL +Y GK++HG I++ I +F +ALID+YGK G LE A
Sbjct: 549 YNNVTISSILSACAGL---PAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELA 605
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M K+ +WN++IS+ ++ KE++ + M+E+G +A+ +TF+A+++ACA A
Sbjct: 606 LRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHA 665
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL LF M ++ + P +EH C+VDL RAG L +A +F+ MPF+PDA + GA
Sbjct: 666 GQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGA 725
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+L + L +L P +CG YV++SNI+A RW+ + +R+ M + +
Sbjct: 726 LLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKV 785
Query: 301 RKIPAYSLIE 310
+KIP YS ++
Sbjct: 786 QKIPGYSWVD 795
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D+ A +F+ DVV +++I+G+V N A+ +F+ ++ ++
Sbjct: 390 LVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALG--IK 447
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN S L +CA + + +G+++HGY+L+N ++ +AL+D+Y K G L+ +
Sbjct: 448 PNAVMVASTLPACASM---AAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLS 504
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KD TWN+MISS A N +EAL +F +M +G++ N +T ++L+ACA
Sbjct: 505 HYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGL 564
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H ++ K + + ++D+ G+ G L A MP E + +
Sbjct: 565 PAIYYGKEI-HGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSWNS 622
Query: 241 LLGACKIHGAV 251
++ A HG V
Sbjct: 623 IISAYGAHGLV 633
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G +D A +F+ M +RD V W +++G+V+ G A+ +F+ M +
Sbjct: 188 LIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVM--RASGCD 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT LS CA E L G Q+H ++ + V + L+ +Y K CLE A
Sbjct: 246 PNFATLACFLSVCAA---EADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEA 302
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M D+ TWN MIS N +AL +F +M++ GL+ + +T ++L A
Sbjct: 303 WRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTEL 362
Query: 181 QLVELGLEL 189
+ G E+
Sbjct: 363 NGFKQGKEI 371
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K ++ A LF M + D+V+W +I+G V+NG +A+ +F +M + ++
Sbjct: 289 LVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG--LQ 346
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T S+L + L G GK++HGYI+RN + VF+ +AL+D+Y K + A
Sbjct: 347 PDSVTLASLLPA---LTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMA 403
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + DV + MIS N + A+ MF + G++ N + + L ACA
Sbjct: 404 QNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASM 463
Query: 181 QLVELGLEL 189
+ +G EL
Sbjct: 464 AAMRIGQEL 472
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 5/226 (2%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I GF G A+ + M + + RP+ T V+ SCA L G L+LG+
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAAL---GALHLGR 167
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + +++G+ALI +Y G L+ A VF M +D WN M+
Sbjct: 168 LVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAG 227
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F M+ G N T L+ CA + G++L H++ K+ + P +
Sbjct: 228 DVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL-HTLAVKYGLEPEVAVA 286
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+V + + L EA MP + D ++ C +G VD
Sbjct: 287 NTLVSMYAKCQCLEEAWRLFGLMPRD-DLVTWNGMISGCVQNGLVD 331
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 196/305 (64%), Gaps = 9/305 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G + A LF+ M R+ +W S+I G +++ EA+ VF +M+ V
Sbjct: 176 MLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACG--VV 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
PNE VS +S+C L + G VHGY R +S + TA++D+YGK G +
Sbjct: 234 PNEPALVSTVSACTQL---RWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRD 290
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF +M ++++ +WN+MI+ LA N E++AL +F +M+ G+R N+ITF+ +L+AC+
Sbjct: 291 AVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSH 350
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ G LF+ M+ F + P+ EHYG +VDLLGR+G + EA +F++SMP EP + G
Sbjct: 351 SGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWG 410
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL GACKIHG V+L EV ++L+EL+P+H RY++LSNI+A RW+ ++R+ + +
Sbjct: 411 ALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKD-- 468
Query: 300 IRKIP 304
RK+P
Sbjct: 469 -RKVP 472
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V ++ Y + G L +A ++F M ++ TW +MI+ L + +EAL +F +M
Sbjct: 169 NVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMV 228
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELF----HSMLGKFEVVPIMEHYGCVVDLLGR 215
G+ NE V+ ++AC + + +E G + + G V +VD+ G+
Sbjct: 229 ACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLAT----AIVDMYGK 284
Query: 216 AGLLSEAKEFMRSMP 230
G + +A +MP
Sbjct: 285 CGSIRDAVRVFAAMP 299
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V T ++ + G +ERA F +M K+V +WN M+ + A +A +FD
Sbjct: 136 VADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDR 195
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
M + N T+ +++T ++ E L +F M+
Sbjct: 196 MPSR----NAATWGSMITGLLQSDHCEEALRVFSDMVA 229
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 192/310 (61%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G++++A+ +F+ M+ D+V W+SII GF +N EA+ +FK M L +
Sbjct: 104 LIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQ 163
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVL +C GL L LG+QVH ++L+ + + + AL+D+Y K G LE A
Sbjct: 164 --QTTLTSVLRACTGL---ALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDA 216
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV KDV +W+ MI+ LA N KEAL +F+ MK G++ N +T V VL AC+ A
Sbjct: 217 NAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHA 276
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL FHSM F + P EHYGC++DLLGRAG LSEA + + M EPDA A
Sbjct: 277 GLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRA 336
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H VD+ +++L L P+ G YV+LSNI+A +RWN ++R+ M GI
Sbjct: 337 LLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGI 396
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 397 KKEPGCSWIE 406
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 11/222 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK G + A +F+ M R+VVSWT++I+ + +A+ M+ VR
Sbjct: 6 LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG--VR 63
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY SVL +C GL N +Q+H I++ + VF+ +ALID+Y + G LE A
Sbjct: 64 PNMFTYSSVLRACDGLFNL------RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF MV D+ W+++I+ A NS EAL +F MK G A + T +VL AC
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
L+ELG ++ H + K++ I+ + ++D+ + G L +A
Sbjct: 178 ALLELGRQV-HVHVLKYDQDLILNN--ALLDMYCKCGSLEDA 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
F+ LI++Y K G L A VF M ++V +W MIS+ ++ +AL M +
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 162 GLRANEITFVAVLTAC 177
G+R N T+ +VL AC
Sbjct: 61 GVRPNMFTYSSVLRAC 76
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG V+ GD+ SA LF+ M R VVSW +I+G+ +NG F EAI +F+ M + +
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN--ID 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + A + G L LGK +H Y +N++ + +G+AL+D+Y K G +++A
Sbjct: 268 PNYVTLVSVLPAIARI---GALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+++ ++ TW+A+I + A + R ++A++ F M + G+ N++ ++ +L+AC+ A
Sbjct: 325 LQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHA 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGRAG L EA+E +R+MP EPD + A
Sbjct: 385 GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKA 444
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK+H + + V L+EL P G YV LSN++A L W +R M I
Sbjct: 445 LLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDI 504
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 505 RKDPGCSWIE 514
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 56/290 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNG---CFGEAICVFKNMMGNVNLVRPNEATY 66
D+D A +F M + + W +I+ EA+ +F M+ + V+PN T+
Sbjct: 67 DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCD-GRVKPNRFTF 125
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS--------------------- 100
SVL +CA L GKQ+HG I++ +E V+S
Sbjct: 126 PSVLKACA---RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCK 182
Query: 101 ---------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
V + +ID ++G ++ A +F M + V +WN MI
Sbjct: 183 NVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMI 242
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
S A N EA+ +F EM+ + N +T V+VL A AR +ELG + H GK +V
Sbjct: 243 SGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKV 301
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+VD+ + G + +A + ++P + +A A++GA +HG
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHG 350
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G + A LF+ M +R+ VSW++++NG+V+ G EA+ VF M VR
Sbjct: 165 LITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQG--VR 222
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V VL++CA L G L GK VHGY+ N I ++VF+GTAL+D+Y K G ++
Sbjct: 223 PDDTVLVGVLAACAQL---GALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLG 279
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K+V W MI LA + R ++L +F +M+ G++ ++I F+ L AC
Sbjct: 280 MEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHT 339
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ELF+SM+ + + P +EHYGC+VDLL R GLLSEA++ + MP +PDA + GA
Sbjct: 340 GLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGA 399
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ C+ H V+L V + +EL+P G YV+L NI++ R A ++R M E G+
Sbjct: 400 LMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGV 459
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 460 EKTPGCSNVE 469
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+LR + LI + + G + A +F M ++ +W+AM++ +EA
Sbjct: 150 LLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREA 209
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
L +F +M+ +G+R ++ V VL ACA+ +E G
Sbjct: 210 LGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQG 244
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + + +F + +RD +SW SII G V+NG F E + F+ M+ + ++
Sbjct: 341 LIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQML--MAKIK 398
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P ++ S++ +CA L L+LGKQ+HGYI RN ++F+ ++L+D+Y K G + A
Sbjct: 399 PKSYSFSSIMPACAHLTT---LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 455
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M ++D+ +W AMI A + +A+ +F++MK +G+ N + F+AVLTAC+ A
Sbjct: 456 RQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHA 515
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ + F+SM F + P +EHY V DLLGRAG L EA +F+ MP P SV
Sbjct: 516 GLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWAT 575
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H VD+ +V R+LE+ PK+ G Y++L+NI++ RW A R ++ GI
Sbjct: 576 LLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGI 635
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 636 RKTPACSWIE 645
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 16/282 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+DS +FE M ++D+VSW +II G RNG +GE + + + M G NL +P+ T SVL
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM-GGANL-KPDSFTLSSVL 307
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
A V+ + GK++HG +R + V++ ++LID+Y K + + RVF + +
Sbjct: 308 PLIAENVD---ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER 364
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
D +WN++I+ N E L F +M ++ +F +++ ACA + LG +L
Sbjct: 365 DGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL- 423
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG- 249
H + + + +VD+ + G + A++ M S ++G C +HG
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMG-CALHGH 482
Query: 250 ---AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--ERW 285
A++L ++ +E P + VL+ HAGL E W
Sbjct: 483 ALDAIELFEQMKTEGIE--PNYVAFMAVLTACSHAGLVDEAW 522
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 119/268 (44%), Gaps = 54/268 (20%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ ++ LF + ++W S+I + +G +++ F M+ + + P+ + SVL
Sbjct: 58 LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASG--LYPDHNVFPSVL 115
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE------------ 118
+CA L++ L LG+ +HGYI+R + ++ G AL+++Y K+ L+
Sbjct: 116 KACAMLMD---LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQV 172
Query: 119 --------RAIRVFKSMV------IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
R++R +V + D+ +N +S SRE EA V+ + K +
Sbjct: 173 LDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVS---CRSREFEAQVLEIDYKPR--- 226
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGK-----FEVVPIME--HYGCVVDLLGRAG 217
+ + AC Q ++ ++ HSM FE++P + + ++ R G
Sbjct: 227 ----SEYREMEACNLGQQIK---DISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNG 279
Query: 218 LLSEAKEFMRSM---PFEPDASVLGALL 242
L E +R M +PD+ L ++L
Sbjct: 280 LYGETLTMVREMGGANLKPDSFTLSSVL 307
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 193/309 (62%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI VK GD + A LF M +R+V SWTS+I G+ + G EAI +F M + L+
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM-EDAGLL- 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V+VL +CA + G L LG+++H + R+ ++ + LID+Y K GCLE A
Sbjct: 243 PNEVTVVAVLVACADM---GNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F +M + V +W+AMI+ LA++ R ++AL +F++M G++ N +TF+ +L AC+
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+VE G + F SM + +VP +EHYGC+VDL RAGLL EA EF+ +MP P+ V GA
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG CK+H + L E R L +L P + G YVVLSNI+A RW +RK M + G+
Sbjct: 420 LLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGV 479
Query: 301 RKIPAYSLI 309
+K P +S I
Sbjct: 480 KKTPGWSSI 488
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 38/273 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
N A L+F+ + +V W + + F +AI +F + + P+ T
Sbjct: 60 NSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFD--ISPDHYTCS 117
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C+ L++ + GK VHGY+ + + ++F+ ++ LY G + A +VF M
Sbjct: 118 FVLKACSRLLD---VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174
Query: 128 VIKDVCTWNAMISSL-------------------------------ASNSREKEALVMFD 156
+DV TWN MI+ L A + KEA+ +F
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
EM++ GL NE+T VAVL ACA + LG + H + + ++D+ +
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI-HDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G L +A +M E A++ HG
Sbjct: 294 GCLEDACRIFDNME-ERTVVSWSAMIAGLAAHG 325
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 193/319 (60%), Gaps = 12/319 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-----GN 55
MI GY + G+ DSAI LFE+M +RDV +W ++I G +NG F EAI +FK M+ GN
Sbjct: 216 MISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGN 275
Query: 56 VN--LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
N +PN+ T S LS+C + G L+LGK +HGY+ + F+ AL+D+YGK
Sbjct: 276 NNDRENKPNKTTLGSALSACG---HTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGK 332
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE--KGLRANEITFV 171
G L+ A RVF + +K++ +WN++I+ LA + A+ +F E+ G++ NE+TFV
Sbjct: 333 CGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFV 392
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
VL AC LVE G F M +++ P +EH+GC++DLLGRAG EA E +R M
Sbjct: 393 GVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNI 452
Query: 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291
EPD V G+LL ACKIHG DL ++L+E+ PK+ G ++L+NI+A +W+ +
Sbjct: 453 EPDEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKV 512
Query: 292 RKAMVEAGIRKIPAYSLIE 310
R+ + E K P S IE
Sbjct: 513 RRLLKEKNAYKTPGCSWIE 531
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 55/296 (18%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
D+ A +F+N+ +V +T++I + A +++NM+ +RPN Y
Sbjct: 90 ADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRR-GAIRPNNFIYPH 148
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRN----------EIVLS------------------ 100
VL SC ++ K VH +L++ IV S
Sbjct: 149 VLRSCPDVLGSNAT---KMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEM 205
Query: 101 ----VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
V TA+I Y ++G + AI +F+SM +DV WNA+I+ A N EA+ +F
Sbjct: 206 LERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFK 265
Query: 157 EM---------KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY- 206
M ++ + N+ T + L+AC ++ LG + H + F+ P + +
Sbjct: 266 RMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLG-KWIHGYV--FKTYPGQDSFI 322
Query: 207 -GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
++D+ G+ G L A+ + + + + +L+ +HG A+DL E+
Sbjct: 323 SNALLDMYGKCGNLKVARRVFDMITLK-NLTSWNSLINCLALHGHSGSAIDLFAEL 377
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 193/313 (61%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G +D A LFE RDVV WT++ING+V+ F +AI +F M + V
Sbjct: 281 MVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEM--QIRGVE 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V++L+ CA L G L GK +H YI N I + + TALI++Y K GC+E++
Sbjct: 339 PDKFIVVTLLTGCAQL---GALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKS 395
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + D +W ++I LA N + EAL +F+ M+ GL+ ++ITFVAVL+AC A
Sbjct: 396 LEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHA 455
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-- 238
LVE G +LFHSM + + P +EHYGC +DLLGRAGLL EA+E ++ +P + + ++
Sbjct: 456 GLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPL 515
Query: 239 -GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALL AC+ +G +D+ + L +++ + +L++I+A +RW +R M +
Sbjct: 516 YGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKD 575
Query: 298 AGIRKIPAYSLIE 310
GI+K+P YS IE
Sbjct: 576 LGIKKVPGYSAIE 588
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 153/327 (46%), Gaps = 75/327 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ +FE M +RD VSW +I+G+VR F EA+ V++ M N +
Sbjct: 149 LMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESN-EK 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEAT VS LS+CA L N L LGK++H YI NE+ L+ MG AL+D+Y K GC+ A
Sbjct: 208 PNEATVVSTLSACAVLRN---LELGKEIHDYI-ANELDLTPIMGNALLDMYCKCGCVSVA 263
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
+F +M++K DV W AMI+ + +
Sbjct: 264 REIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFE 323
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV-------VPI 202
+A+ +F EM+ +G+ ++ V +LT CA+ +E G + H+ + + + +
Sbjct: 324 DAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG-KWIHNYIDENRIKMDAVVSTAL 382
Query: 203 MEHY---GCV----------VDL-----------LGRAGLLSEAKEFMRSMP---FEPDA 235
+E Y GC+ D+ L G SEA E +M +PD
Sbjct: 383 IEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDD 442
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLL 262
A+L AC G V E GR+L
Sbjct: 443 ITFVAVLSACGHAGLV----EEGRKLF 465
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 118/224 (52%), Gaps = 12/224 (5%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD + A +F ++ + + +I FV+ G AI +F+ + V P+ TY
Sbjct: 56 GDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQL--RERGVWPDNYTYPY 113
Query: 69 VLSS--CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL C G V EG +++H ++++ + ++ +L+D+Y ++G +E +VF+
Sbjct: 114 VLKGIGCIGEVREG-----EKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEE 168
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLVEL 185
M +D +WN MIS R +EA+ ++ M+ E + NE T V+ L+ACA + +EL
Sbjct: 169 MPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLEL 228
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
G E+ + + ++ PIM + ++D+ + G +S A+E +M
Sbjct: 229 GKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAM 270
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-----RNEIVLSVFMGTALIDLYGKVGCL 117
+ TY+S+L SC + KQ+ +I ++ +L+ M + +G
Sbjct: 8 KGTYISLLKSCKSMSQL------KQIQAHIFCFGLQQDRDILNKLMA---FSMDSSLGDF 58
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A R+F + + +N MI + + A+ +F +++E+G+ + T+ VL
Sbjct: 59 NYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGI 118
Query: 178 ARAQLVELGLELFHSMLGK--FEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPFEP 233
V G E H+ + K E P Y C ++D+ GL+ + MP E
Sbjct: 119 GCIGEVREG-EKIHAFVVKTGLEFDP----YVCNSLMDMYAELGLVEGFTQVFEEMP-ER 172
Query: 234 DA 235
DA
Sbjct: 173 DA 174
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G++ +A LF++M RDV+SWTS+I+ + + G FG+A+ +F+ MM V V+
Sbjct: 968 MIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMM--VTKVK 1025
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SVLS+CA + G L +G+ VH YI + ++ +++G ALID+Y K G +E+
Sbjct: 1026 PDEITVASVLSACAHI---GALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKG 1082
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M +D +W ++I+ LA N AL +F M +G+R TFV VL ACA A
Sbjct: 1083 LSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHA 1142
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ GLE F SM + + P M+HYGCVVDLL R+G L A EF++ MP +PD V
Sbjct: 1143 GVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRI 1202
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A ++HG + L ++LLE P + G Y++ SN +AG RW +R+ M E+ +
Sbjct: 1203 LLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNV 1262
Query: 301 RKIPAYSLIE 310
K A S +E
Sbjct: 1263 HKPSASSSVE 1272
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 43/317 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY ++ A +F+ M +RD+VSW S+I G+ R + E + VF+ M + V+
Sbjct: 836 LIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEM--RMADVK 893
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
+ T V V+ +C L G + + YI N++ + V++G LID+YG
Sbjct: 894 GDAVTMVKVVLACTVL---GEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLA 950
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
K G L A ++F M +DV +W +MISS + +
Sbjct: 951 RRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFG 1010
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM ++ +EIT +VL+ACA +++G E H + K++V + +
Sbjct: 1011 KAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVG-EAVHEYIRKYDVNADIYVGNAL 1069
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPK 267
+D+ + G + + M + D+ +++ ++G+ D + +L ++P
Sbjct: 1070 IDMYCKCGAVEKGLSVFEEMG-KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPT 1128
Query: 268 HCGRY--VVLSNIHAGL 282
H G + V+L+ HAG+
Sbjct: 1129 H-GTFVGVLLACAHAGV 1144
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF + + + W +I G+ + EAI + N+M + L N TY +L +CA +
Sbjct: 752 LFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNY-NLMYSQALF-GNNLTYPFLLKACARI 809
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
N VH +L+ +F+ ALI Y L A +VF M +D+ +WN
Sbjct: 810 SNVSC----TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWN 865
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
++I R E LV+F+EM+ ++ + +T V V+ AC ++LG+
Sbjct: 866 SLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLAC--------------TVLGE 911
Query: 197 FEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSM 229
+ VV M Y ++D+ GR ++ A+ M
Sbjct: 912 WGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRM 957
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G++D A +LF+ M +RD +SW ++I+G+ ++G EA+ +F M + ++
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL- 403
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + LSSCA + L LGKQ+HG +++ G AL+ +YGK G +E A
Sbjct: 404 -NRSALACALSSCAEIA---ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KD+ +WN MI+ A + KEAL +F+ MK ++ +++T V VL+AC+
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHT 518
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+E F+SM + + +HY C++DLLGRAG L EA M+SMPF PDA+ GA
Sbjct: 519 GFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + ++ E++P + G YV+LSN++A RW ++R M + G+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 639 KKVPGYSWVE 648
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 45/257 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYVKNG++ +A LF M ++DVVSW ++++GF +NG EA +F M LV+
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-----LVK 182
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMG--------------- 104
NE ++ +LS+ V G + +++ + EIV + MG
Sbjct: 183 -NEISWNGLLSA---YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238
Query: 105 -----------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
+I Y + G L A R+F+ + I+DV W AM+S N EA
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+F+EM EK NE+++ A++ ++Q +E ELF M + + +V
Sbjct: 299 IFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGY 349
Query: 214 GRAGLLSEAKEFMRSMP 230
+ G + +AK MP
Sbjct: 350 AQCGNIDQAKILFDEMP 366
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y++ G +SA+ +F M +R V++ ++I+G++ N F A VF+ M P
Sbjct: 67 ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM--------P 118
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ +S +G V G L + + + ++V A++ + + G +E A
Sbjct: 119 DR-DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV----SWNAMLSGFAQNGFVEEAR 173
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
++F M++K+ +WN ++S+ N R ++A +FD + + +++ ++ R +
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEI----VSWNCLMGGYVRKK 229
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--GLLSEAKEFMRSMPFEPDASVLG 239
++ LF M P+ + + + G A GLLSEA+ +P D
Sbjct: 230 RLDDARSLFDRM-------PVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWT 281
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKH 268
A++ +G +D E R E+ K+
Sbjct: 282 AMVSGFVQNGMLD---EATRIFEEMPEKN 307
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 22/210 (10%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
++ D+V W I+ ++R G A+ VF M R + TY +++S G ++
Sbjct: 55 IVDSDIVKWNRKISAYMRKGQCESALSVFNGMR------RRSTVTYNAMIS---GYLSNN 105
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
++V + +++ ++ Y K G L A +F M KDV +WNAM+S
Sbjct: 106 KFDCARKVFEKMPDRDLI----SWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
A N +EA +FD+M L NEI++ +L+A + +E LF S + +E+V
Sbjct: 162 GFAQNGFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKM-DWEIV 216
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ C++ R L +A+ MP
Sbjct: 217 S----WNCLMGGYVRKKRLDDARSLFDRMP 242
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 121/266 (45%), Gaps = 25/266 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YV+NG ++ A LF++ + ++VSW ++ G+VR +A +F M VR
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM-----PVR 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + G G L ++ + + VF TA++ + + G L+ A
Sbjct: 245 DKISWNIMI----TGYAQNGLLSEARR----LFEELPIRDVFAWTAMVSGFVQNGMLDEA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F+ M K+ +WNAMI+ + + ++A +FD+M + N ++ ++T A+
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMVTGYAQC 352
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP---DASV 237
++ LF M + + + ++ ++G EA M + + S
Sbjct: 353 GNIDQAKILFDEMPQRDCI-----SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
L L +C A++L ++ RL++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVK 433
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 195/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G+ +SA LF M RD++SWT+++N + RN + E I +F +++ +
Sbjct: 179 MIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMI-- 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L LGK+VH Y++ L V++G++LID+Y K G ++ A
Sbjct: 237 PDEVTMTTVISACAHL---GALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMA 293
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + K++ WN +I LA++ +EAL MF EM+ K +R N +TF+++LTAC A
Sbjct: 294 LLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHA 353
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G F SM+ + + P +EHYGC+VDLL +AGLL +A E +R+M EP++ + GA
Sbjct: 354 GFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGA 413
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK+H +++ H + L+ L+P + G Y +L N++A RWN +R M + G+
Sbjct: 414 LLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGV 473
Query: 301 RK-IPAYSLIE 310
K P S +E
Sbjct: 474 EKRCPGSSWVE 484
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 19/244 (7%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGE-AICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
F N+ +V+ + ++I G V + C+ E A+ + +M+ N V P ++ S++ +C L
Sbjct: 33 FANVQNPNVLVFNALIRGCV-HCCYSEQALVHYMHMLRNN--VMPTSYSFSSLIKACTLL 89
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
V+ G+ VHG++ ++ VF+ T LI+ Y G + + RVF M +DV W
Sbjct: 90 VDSA---FGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWT 146
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
MIS+ + A +FDEM EK N T+ A++ + E LF+ M +
Sbjct: 147 TMISAHVRDGDMASAGRLFDEMPEK----NVATWNAMIDGYGKLGNAESAEFLFNQMPAR 202
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDL 253
+++ + +++ R E + + PD + ++ AC GA+ L
Sbjct: 203 -DIIS----WTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALAL 257
Query: 254 CHEV 257
EV
Sbjct: 258 GKEV 261
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+ SA +F+ M+K+DVV+W ++I G+ +NG EAI +F M + V
Sbjct: 268 LIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGM--RESGVN 325
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V VLS+CA + G L GK + Y + +++ TALID+Y K G L+ A
Sbjct: 326 PDKITLVGVLSACASI---GALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDA 382
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
+RVF+ M K+ +WNAMIS+LA + R +E+L +F M ++G +R N+I+F+ VL+AC
Sbjct: 383 LRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACV 442
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G +LF M F +VP +EH+ C+VDLL RAG + EA +F+ MP +PD VL
Sbjct: 443 HAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVL 502
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+ VD+ V LLE++P + G Y++ S I A ++RW+ + +R M +
Sbjct: 503 GALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQR 562
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 563 GVTKTPGCSWIE 574
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 158/289 (54%), Gaps = 16/289 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G++ A +F+ + ++D+VSW S+I+G+ R G G+A+ +F M
Sbjct: 167 LITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAG--FE 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS+L +C L G L LG + G+++ NE+ L+ F+G+ALI +YGK G L A
Sbjct: 225 PDEMTLVSILGACGDL---GDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV KDV TWNAMI+ A N EA+++F M+E G+ ++IT V VL+ACA
Sbjct: 282 RRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASI 341
Query: 181 QLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G L+ + S G + + ++D+ + G L +A MP + + S
Sbjct: 342 GALDFGKWLDTYASERGLQNDIYVST---ALIDMYAKCGSLDDALRVFEDMPQKNEVS-W 397
Query: 239 GALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL 282
A++ A HG ++ L + + ++P VLS +HAGL
Sbjct: 398 NAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGL 446
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
++ D ++A LLF + + ++ +I G F M + +RPN
Sbjct: 69 FIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFG-IRPNNF 127
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY V +CA L+ L G+ H +L++ + + +LI +Y + G L A RVF
Sbjct: 128 TYPFVFIACANLLV---LNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVF 184
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ KD+ +WN+MIS + +A+ +F EM++ G +E+T V++L AC L +
Sbjct: 185 DEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGAC--GDLGD 242
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LGL S + F V M+ V + + G+ G LS A+ M + D A
Sbjct: 243 LGLG---SWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRM-VKKDVVTWNA 298
Query: 241 LLGACKIHGAVD 252
++ +G D
Sbjct: 299 MITGYAQNGVSD 310
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 192/312 (61%), Gaps = 5/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+I Y +G +D A LF M +R+V+SW+ +ING+VR G + EA+ +F+ M M VN V
Sbjct: 105 LISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 164
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPNE T VL++C L G L GK H YI + + + V +GTALID+Y K G +E+
Sbjct: 165 RPNEFTMSGVLAACGRL---GALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEK 221
Query: 120 AIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF ++ KDV W+AMIS LA + +E + +F +M +G+R N +TF+AV AC
Sbjct: 222 ATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACV 281
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV G + M + ++P ++HYGC+VDL GRAG + EA ++SMP EPD V
Sbjct: 282 HGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVW 341
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL ++HG ++ C ++L+EL+P + G YV+LSN++A RW +R M
Sbjct: 342 GALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETM 401
Query: 299 GIRKIPAYSLIE 310
GI+K+P SLIE
Sbjct: 402 GIKKVPGCSLIE 413
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)
Query: 29 WTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
W ++I V+ G I +F M + V+P+ T+ +L S A + L+
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRM--RFHGVQPDFHTFPFLLQSFA---SPSLLH 81
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG+ VH ILR + + F+ T+LI +Y G ++ A +F M ++V +W+ MI+
Sbjct: 82 LGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYV 141
Query: 144 SNSREKEALVMFDEMKEKG---LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
+ KEAL +F EM+ G +R NE T VL AC R +E G + H+ + K +
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCGMP 200
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLC 254
+ ++D+ + G + +A ++ D A++ +HG + C
Sbjct: 201 VDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEEC 254
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G++ +A LF M RDV+SWTS+I G+ EA+ +F+ MM V++V+
Sbjct: 286 MIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM--VSMVK 343
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + LS+CA L G L G+ VH YI +++I VF+G +LID+Y K G +E+A
Sbjct: 344 PDEITVATALSACAHL---GSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA 400
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M +D +W ++IS LA N + AL +FD+M ++G+ TFV VL ACA
Sbjct: 401 LQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHV 460
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+E F SM + + P M+HYGCVVDLL R+G L A F++ MP PD +
Sbjct: 461 GLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRI 520
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+HG + L V ++LL L P + G YV+ S+ +AG +RW+ +RK M +
Sbjct: 521 LLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNL 580
Query: 301 RKIPAYSLIE 310
+K AYS IE
Sbjct: 581 QKPCAYSSIE 590
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 45/318 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV G++ A +F+ ML+RDVVSW SII G+ + F + + +F+ M +N VR
Sbjct: 154 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQA-IN-VR 211
Query: 61 PNEATYVSVLSSCAGLVN-EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ T + +S+ L E G YL K YI + +V+ +++G LID+YG+ G ++
Sbjct: 212 ADSVTMMKAISATCFLSEWEMGDYLVK----YIDEHGVVVDLYLGNTLIDMYGRRGMIDF 267
Query: 120 AIRVFKSMVIKDVCTWNAMISSLAS-------------------------------NSRE 148
A RVF M K++ +WNAMI A +
Sbjct: 268 AGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQH 327
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+ +F EM ++ +EIT L+ACA ++ G E H + K ++ +
Sbjct: 328 AEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAG-EAVHDYIRKHDIKSDVFVGNS 386
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQP 266
++D+ + G++ +A + M D+ +++ ++G + V ++L+ + P
Sbjct: 387 LIDMYCKCGVVEKALQVFNDMKTR-DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 445
Query: 267 KHCGRY--VVLSNIHAGL 282
H G + V+L+ H GL
Sbjct: 446 TH-GTFVGVLLACAHVGL 462
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 10/239 (4%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A +F + + ++ W +I+G ++ +AI + M ++ + T++ +
Sbjct: 63 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMY--YKGIQGSHLTFIFLF 120
Query: 71 SSCAGL--VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
SCA + V +G + +VH L E L F+ ALI +Y G L A +VF M+
Sbjct: 121 KSCARVSDVRQGQMV---RVHSMKLGFESYL--FVSNALIHMYVCFGELAMAQKVFDGML 175
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+DV +WN++I +R K+ L +F EM+ +RA+ +T + ++A E+G
Sbjct: 176 ERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDY 235
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
L + + VV + ++D+ GR G++ A M + S ++G K+
Sbjct: 236 LV-KYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKV 293
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 200/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A +FE + +RDVVS T+II+G+ + G EA+ +F+ + G ++
Sbjct: 406 LLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEG--MK 463
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY VL++ +GL L LGKQVH ++LR+EI V + +LID+Y K G L +
Sbjct: 464 SNYVTYTGVLTALSGL---AALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYS 520
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F +M + V +WNAM+ + + +E L +F M+E+ ++ + +T +AVL+ C+
Sbjct: 521 RRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSH 580
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
L + GL +F+ M GK EV P MEHYGCVVDLLGR+G + EA EF++ MPFEP A++
Sbjct: 581 GGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIW 640
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC++H VD+ G++LLE++P + G YV+LSN++A RW + LR M++
Sbjct: 641 GSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKK 700
Query: 299 GIRKIPAYSLIE 310
+ K P S IE
Sbjct: 701 TVTKEPGRSSIE 712
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 143/279 (51%), Gaps = 31/279 (11%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF--------------- 49
Y K + A +F+ M +R+VVSWT++I+ + + G +A+ +F
Sbjct: 288 YTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAID 347
Query: 50 KNMMGNVN----LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105
K + N N PNE T+ +VL+SC + G LG+Q+H I++ VF+G+
Sbjct: 348 KLKLSNPNRPWVCTEPNEFTFATVLTSCTSSL---GFILGRQIHSLIIKLNYEDHVFVGS 404
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+L+D+Y K G + A VF+ + +DV + A+IS A ++EAL +F ++ +G+++
Sbjct: 405 SLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKS 464
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
N +T+ VLTA + ++LG ++ H+ + + E+ + ++D+ + G L+ ++
Sbjct: 465 NYVTYTGVLTALSGLAALDLGKQV-HNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRI 523
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+M +E A+L HG GR +L+L
Sbjct: 524 FDTM-YERTVISWNAMLVGYSKHGE-------GREVLKL 554
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++L+ C VN+ G++VH ++++ + SVF+ T LI LY K L A VF
Sbjct: 246 YNAILNEC---VNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFD 302
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMF--------------DEMKEKG-------LR 164
M ++V +W AMIS+ + +AL +F D++K
Sbjct: 303 EMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTE 362
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
NE TF VLT+C + LG ++ HS++ K + ++D+ + G + EA+
Sbjct: 363 PNEFTFATVLTSCTSSLGFILGRQI-HSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEART 421
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
+P E D A++ G + E+ RRL
Sbjct: 422 VFECLP-ERDVVSCTAIISGYAQLGLDEEALELFRRL 457
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G++ +A LF M RDV+SWTS+I G+ EA+ +F+ MM V++V+
Sbjct: 245 MIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMM--VSMVK 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + LS+CA L G L G+ VH YI +++I VF+G +LID+Y K G +E+A
Sbjct: 303 PDEITVATALSACAHL---GSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M +D +W ++IS LA N + AL +FD+M ++G+ TFV VL ACA
Sbjct: 360 LQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHV 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+E F SM + + P M+HYGCVVDLL R+G L A F++ MP PD +
Sbjct: 420 GLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRI 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+HG + L V ++LL L P + G YV+ S+ +AG +RW+ +RK M +
Sbjct: 480 LLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNL 539
Query: 301 RKIPAYSLIE 310
+K AYS IE
Sbjct: 540 QKPCAYSSIE 549
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 45/318 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV G++ A +F+ ML+RDVVSW SII G+ + F + + +F+ M +N VR
Sbjct: 113 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQA-IN-VR 170
Query: 61 PNEATYVSVLSSCAGLVN-EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ T + +S+ L E G YL K YI + +V+ +++G LID+YG+ G ++
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVK----YIDEHGVVVDLYLGNTLIDMYGRRGMIDF 226
Query: 120 AIRVFKSMVIKDVCTWNAMISSLAS-------------------------------NSRE 148
A RVF M K++ +WNAMI A +
Sbjct: 227 AGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQH 286
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+ +F EM ++ +EIT L+ACA ++ G E H + K ++ +
Sbjct: 287 AEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAG-EAVHDYIRKHDIKSDVFVGNS 345
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQP 266
++D+ + G++ +A + M D+ +++ ++G + V ++L+ + P
Sbjct: 346 LIDMYCKCGVVEKALQVFNDMKTR-DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 404
Query: 267 KHCGRY--VVLSNIHAGL 282
H G + V+L+ H GL
Sbjct: 405 TH-GTFVGVLLACAHVGL 421
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 6/237 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A +F + + ++ W +I+G ++ +AI + M ++ + T++ +
Sbjct: 22 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMY--YKGIQGSHLTFIFLF 79
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SCA + + + G+ V + ++ F+ ALI +Y G L A +VF M+ +
Sbjct: 80 KSCARVSD---VRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLER 136
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN++I +R K+ L +F EM+ +RA+ +T + ++A E+G L
Sbjct: 137 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLV 196
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ + VV + ++D+ GR G++ A M + S ++G K+
Sbjct: 197 -KYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKV 252
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y G ++ A +F + ++D V WT++I+GFVRN A+ F+ M G VR
Sbjct: 218 MISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN--VR 275
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+C+ L G L +G+ VH Y+ + EI L++F+G ALI++Y + G ++ A
Sbjct: 276 PNEFTIVCVLSACSQL---GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV T+N MIS L+ N + ++A+ +F M + LR +TFV VL AC+
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 392
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++FHSM + V P +EHYGC+VDLLGR G L EA + +R+M PD +LG
Sbjct: 393 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H ++L +V + L + G YV+LS+++A +W A +R M EAG+
Sbjct: 453 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 513 QKEPGCSSIE 522
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 42/286 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ +V +T++I+GFV +G + +AI ++ M+ + L P+ S+L
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSIL--PDNYLMASIL 154
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-- 128
+C + L G++VH L+ + + + +++LYGK G L A RVF+ M
Sbjct: 155 KACGSQL---ALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 211
Query: 129 ----------------------------IKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
KD W AMI N AL F M+
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 271
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
+ +R NE T V VL+AC++ +E+G HS + KFE+ + ++++ R G +
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSID 330
Query: 221 EAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCH-EVGRRL 261
EA+ M + D ++ ++G A++L +GRRL
Sbjct: 331 EAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRL 375
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H ++RN FM L+ K ++ A R+F+ +V + A+I S+
Sbjct: 68 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+A+ ++ M + + ++L AC + G E+ HS K +
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV-HSRALKLGLSSNRLVRL 186
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++L G+ G L +A+ MP + AS +
Sbjct: 187 RIMELYGKCGELGDARRVFEEMPEDVVASTV 217
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++ YVK G +D L+F++M +RDVV+W+++I G+ +NG EA+ +F+NM ++
Sbjct: 269 MLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSA--QIK 326
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G + G+++ Y+ ++ +V++ +AL+ +Y K G + +A
Sbjct: 327 PNDVTLVSVLSACAQL---GSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKA 383
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +D TWN+MI LA N ++A+ +++ MKE ++ N ITFV ++TAC A
Sbjct: 384 RQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHA 443
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VELGLE F SM + P +EH+ C+VDL R+G L +A EF+ M EP+ + G
Sbjct: 444 GHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGT 503
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH V+L G++LLEL+P + G YV+LSNI+A RW A +RK M + +
Sbjct: 504 LLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRV 563
Query: 301 RKIPAYSLIE 310
+K AYS +E
Sbjct: 564 QKAAAYSWVE 573
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 142/267 (53%), Gaps = 7/267 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y ++G++ +A LF+ M R +VSW ++I+ + +NG + + +F+ M +
Sbjct: 168 LISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDE--MCE 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +VLS CA L G L +G ++ + ++ + TA++++Y K G ++
Sbjct: 226 PNEITLATVLSICAKL---GDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDG 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV TW+AMI+ A N R EAL +F+ MK ++ N++T V+VL+ACA+
Sbjct: 283 RLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQL 342
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G E S + ++ + ++ + + G + +A++ +P + D +
Sbjct: 343 GSVETG-ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNS 400
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPK 267
++ I+G + + R+ E++ K
Sbjct: 401 MIMGLAINGFAEDAIALYNRMKEIEVK 427
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 124/306 (40%), Gaps = 69/306 (22%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ + D S I + R EA+ F +M + N VR T + SCA L
Sbjct: 52 VFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSM--HQNNVRIVCFTIPPIFKSCASL 109
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD----- 131
+ + +GKQVH ++R SVF ALI+ Y K+ L A +F +++KD
Sbjct: 110 L---AIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYN 166
Query: 132 --------------------------VCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+ +WNAMIS A N + ++F M+++
Sbjct: 167 CLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEP 226
Query: 166 NEITFVAVLTACARAQLVELGLELF----HSMLGKFEVVP--IMEHY---GCVVD----- 211
NEIT VL+ CA+ +E+GL + + LG +V ++E Y G V D
Sbjct: 227 NEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 286
Query: 212 -------------------LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
GR+ E E M+S +P+ L ++L AC G+V+
Sbjct: 287 DHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVE 346
Query: 253 LCHEVG 258
+G
Sbjct: 347 TGERIG 352
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G ++NG +D+A +F+ M D VSWT++I+GFV+NG EAI F+ M+ ++ V
Sbjct: 144 MVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML--LDSVE 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++V+S+CA + G L LG VH +LR + +V + +LID+Y + G ++ A
Sbjct: 202 PDYVTLIAVVSACAEV---GALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF S+ + V +WN+MI LA+N EA+ +F+EM+ +G + + +T VLTAC+ A
Sbjct: 259 AQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHA 318
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L E GL + M ++ + MEHYGCVVDLLGRAG L EA + +MP P+ VLGA
Sbjct: 319 GLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGA 378
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG +D+ ++ + L EL P YV+LSNI+A + +W+ A +R M G+
Sbjct: 379 LLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGV 438
Query: 301 RKIPAYSLIE 310
+K P +S++E
Sbjct: 439 KKRPGHSIVE 448
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 107/296 (36%), Gaps = 74/296 (25%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE--- 79
RDVVSWTS I R G A M+ + PN+ T ++VLS+CA +
Sbjct: 29 PRDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLA 88
Query: 80 -------------------------GGLYLGKQVHGYILR---NEIVLSVFMGTALIDLY 111
YL ++ L+ V SV ++
Sbjct: 89 RPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGL 148
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
+ G ++ A VF M D +W A+I N R EA+ F M + + +T +
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLI 208
Query: 172 AVLTAC-----------------------------------ARAQLVELGLELFHSMLGK 196
AV++AC AR V+L ++FHS+ +
Sbjct: 209 AVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKR 268
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHG 249
V + ++ L GL +EA E MR F+PDA L +L AC G
Sbjct: 269 TVV-----SWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAG 319
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 195/313 (62%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G +D A LFE RDVV WT++ING+V+ F +A+ +F+ M + V
Sbjct: 305 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREM--QIKRVS 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V++L+ CA L G L GK +HGYI N+I++ +GTALI++Y K G +E++
Sbjct: 363 PDRFTLVALLTGCAQL---GTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKS 419
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + KD +W ++I LA N + +AL +F EM + G++ ++ITF+ VL+AC+
Sbjct: 420 LEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHG 479
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
LVE G + F SM +++ P +EHYGC++DLLGRAG L EA+E + P E +
Sbjct: 480 GLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPL 539
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALL AC+ HG V++ V +RL+ ++ + +L+NI+A +RW T +R+ M +
Sbjct: 540 YGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKD 599
Query: 298 AGIRKIPAYSLIE 310
G++K+P S +E
Sbjct: 600 LGVKKVPGCSSVE 612
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 37/274 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G + + +FE M +RDVVSW +I+G+V+ + +A+ VF+ M +L R
Sbjct: 173 LMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSL-R 231
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEAT VS LS+C L L LGK++H Y+ R ++ ++ +G AL+D+Y K G L A
Sbjct: 232 PNEATVVSTLSACIAL---KMLELGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHLSIA 287
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
+F M IK DV W AMI+ +R
Sbjct: 288 REIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFD 347
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM+ K + + T VA+LT CA+ +E G + H + + +++ +
Sbjct: 348 DAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG-KWIHGYIDENKIMIDAVVGTAL 406
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+++ + G + ++ E + + AS + G
Sbjct: 407 IEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICG 440
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 142/281 (50%), Gaps = 25/281 (8%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS--CAGLVNEGGLYLGK 86
+ +I F +NG F +A+ +F+ + + P+ TY V + C G V EG +
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQL--REEGLSPDNFTYPFVFKAIGCLGEVREG-----E 152
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+V+G+++++ + ++ +L+D+Y +VG ++ +VF+ M +DV +WN +IS
Sbjct: 153 KVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCR 212
Query: 147 REKEALVMFDEMKEK-GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
R ++A+ +F M+++ LR NE T V+ L+AC +++ELG E+ + + ++
Sbjct: 213 RYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFT--IKI 270
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV--GRRLLE 263
+VD+ + G LS A+E MP + + + G V+ C ++ R L E
Sbjct: 271 GNALVDMYCKCGHLSIAREIFNDMPIKT------VICWTSMVSGYVN-CGQLDEARELFE 323
Query: 264 LQPKHCGRYVVL-SNIHAGLERWNRATDLRKAMVEAGIRKI 303
P R VVL + + G ++NR D E I+++
Sbjct: 324 RSPV---RDVVLWTAMINGYVQFNRFDDAVALFREMQIKRV 361
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 201/341 (58%), Gaps = 36/341 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGC------------------- 41
+ID Y GDMD+A+ +F+NM RDV+SWT+I+ GF G
Sbjct: 261 LIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSW 320
Query: 42 ------------FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
F E + +F+ M ++P+E T VS+L++CA L G L LG+ +
Sbjct: 321 TAMIDGYLQVNRFKEVLSLFREMQAAN--IKPDEFTMVSILTACAHL---GALELGEWIK 375
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
YI +NEI + F+G ALID+Y G +E+AIR+F +M +D +W A+I LA N +
Sbjct: 376 AYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGE 435
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL MF +M + + +E+T + VL AC + +V+ G + F M + + P + HYGC+
Sbjct: 436 EALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCM 495
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269
VDLLGRAG L EA E +++MP +P++ V G+LLGAC++H ++ +++LEL+P++
Sbjct: 496 VDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENG 555
Query: 270 GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
YV+L NI+A RW + ++RK M++ GI+K P SLIE
Sbjct: 556 AVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIE 596
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 131/274 (47%), Gaps = 37/274 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +G++ A +F+ K DVV+W +I+G+ R+ F E++ +F M V
Sbjct: 160 LIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM--ERMRVL 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+C+ L + L +GK+VH Y+ +I + ALID+Y G ++ A
Sbjct: 218 PSSITLVSVLSACSKLKD---LNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274
Query: 121 IRVFKSMVIKDVCTWNAMISS--------LASN-----------------------SREK 149
+ +F +M +DV +W A+++ LA N +R K
Sbjct: 275 LGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFK 334
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
E L +F EM+ ++ +E T V++LTACA +ELG E + + K E+ +
Sbjct: 335 EVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNAL 393
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+D+ G + +A +MP S + G
Sbjct: 394 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 6/214 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GDM+ A ++F+ M + W ++I G+ R GC A+ ++ M+ V P+E TY
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERG--VMPDEYTYPF 124
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L + + G+++H +I++ +VF+ ALI LY G + A VF
Sbjct: 125 LLKR---FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
DV TWN MIS + + E++ +FDEM+ + + IT V+VL+AC++ + + +G
Sbjct: 182 KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKR 241
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ H + ++ P+ ++D+ G + A
Sbjct: 242 V-HRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGK--VGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+H + ++ + + +I K +G +E A VF +M + WN MI +
Sbjct: 36 KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
A+ M+ EM E+G+ +E T+ +L R V+ G EL
Sbjct: 96 RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG ++ A LF+ M +D VSW+++I G V N EA+ VF +M + ++
Sbjct: 341 MISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSM--RAHEIK 398
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T VSV+S+C+ L L GK VH YI + + +++ +GT+LID+Y K GC+E A
Sbjct: 399 PDDVTLVSVISACSNL---SALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAA 455
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACAR 179
+ VF + K WNA+I LA N +L MF EM+ G NEITF VL+AC
Sbjct: 456 LEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRH 515
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G + F M K+++VP + HYGC+VDLLGRAG + EA++ ++SMP PD G
Sbjct: 516 GGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWG 575
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG ++ VG++L++L P H G +LSNI+A W DLR +M +
Sbjct: 576 ALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQH 635
Query: 300 IRKIPAYSLIE 310
+ K+ S++E
Sbjct: 636 VAKVAGCSMVE 646
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 31/248 (12%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ + G ++ A +F+ RD +WT++++ F RN F EA+ VF +M V +EA
Sbjct: 213 FARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPV--DEA 270
Query: 65 TYVSVLSSCA--GLVNEG----GLY----LGKQV-------HGYILRNEIV--------- 98
VSV+++CA G++ G GL LG +V H Y ++V
Sbjct: 271 VMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNG 330
Query: 99 --LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
L F ++I Y K G +E A +F M KD +W+AMI+ N++ EAL +FD
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFD 390
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
M+ ++ +++T V+V++AC+ +E G +L H + K++ + ++D+ +
Sbjct: 391 SMRAHEIKPDDVTLVSVISACSNLSALEQG-KLVHEYIRKYQYNITIVLGTSLIDMYMKC 449
Query: 217 GLLSEAKE 224
G + A E
Sbjct: 450 GCMEAALE 457
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
L+ + G +E A VF +D TW AM+S N EAL +F +M+E+G +E
Sbjct: 212 LFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAV 271
Query: 170 FVAVLTACARAQLVELGLELFHSML 194
V+V+ ACA++ +++ G E+ H ++
Sbjct: 272 MVSVVAACAKSGVIQNG-EVCHGLV 295
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + ++CA G + G QVH + +++ ++++ AL+ +Y GC+ A
Sbjct: 104 PDTYTHPLLAAACAA---RGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASA 160
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
RVF + + D +WN ++++ + ++A+ +F M E+
Sbjct: 161 RRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPER 201
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY NGD+ SA +F +M ++VVSW ++I+G+V N F +A+CVF +M+ N R
Sbjct: 240 MISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLIN-GECR 298
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S+LS+CA L G L GK ++ YI +N++ LS+ +G ALID++ K G +E A
Sbjct: 299 PDQTTLISILSACAHL---GSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENA 355
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + + TW M+S LA N + +EA+ +FD+M +G + +++ F+AVL+AC
Sbjct: 356 KEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHG 415
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F M+ +F + P +EHYGC+VDLLGRAG L EA F M +P+A +
Sbjct: 416 GLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWAT 475
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CKIHG DL V ++++ +P + ++SN+ A RW R AM + +
Sbjct: 476 LLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRM 535
Query: 301 RKIPAYSLIE 310
K+P S I+
Sbjct: 536 EKVPGCSSIQ 545
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y+ G++ SAI L + M +R++V+W S++ G + G A VF+ M
Sbjct: 147 MISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQM-------- 198
Query: 61 P--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P NE ++ S++S G V G + + + Y + + V+S TA+I Y G L+
Sbjct: 199 PLRNEVSWNSMIS---GYVRIGDVRAAQSIF-YQMPEKTVVS---WTAMISGYATNGDLK 251
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTAC 177
A +F M +K+V +WNAMIS N +AL +F M G R ++ T +++L+AC
Sbjct: 252 SAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSAC 311
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A +E G + +S + K ++ + ++D+ + G + AKE M
Sbjct: 312 AHLGSLEHG-KWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHM 362
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103
EA+ V+ M +V N T+ +L L G+ +HG IL+ SVF+
Sbjct: 57 EALRVYSRM--KALMVEANSFTFTFLLKC---FETSQALEDGRVIHGEILKLGFGSSVFV 111
Query: 104 GTALIDLYGKVG-CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+L+ Y L A RVF+ M +DV +WN+MIS+ + + A+ + D+M E+
Sbjct: 112 QNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPER- 170
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
N +T+ +V+ ++A +EL +F M + EV + ++ R G + A
Sbjct: 171 ---NIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEV-----SWNSMISGYVRIGDVRAA 222
Query: 223 KEFMRSMP 230
+ MP
Sbjct: 223 QSIFYQMP 230
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 206/313 (65%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVN 57
++ GY K G+MD A L E M R+ VSWT +I+G+ R+G EAI VF+ M M NV+
Sbjct: 188 LLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVD 247
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
P+E T ++VLS+CA L G L LG+++ Y+ + +V + A+ID+Y K G +
Sbjct: 248 ---PDEVTLLAVLSACADL---GSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNI 301
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+A+ VF+S+ ++V TW +I+ LA++ EALVMFD M + G++ N++TF+A+L+AC
Sbjct: 302 TKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSAC 361
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ V+LG F+SM K+ + P +EHYGC++DLLGRAG L EA+E ++SMPFE +A++
Sbjct: 362 SHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAI 421
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL A +H +D+ +L++L+P + G Y++L+N+++ L RW+ + +RK M
Sbjct: 422 WGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKG 481
Query: 298 AGIRKIPAYSLIE 310
G++K+ S IE
Sbjct: 482 IGVKKLAGESSIE 494
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 38/223 (17%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T+ VL +V ++ G+QVHG + SV + T LI +Y G L
Sbjct: 113 KPDTFTFPFVLKI---VVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGD 169
Query: 120 AIRVFKSMVIKDVCTWNAM---------------------------------ISSLASNS 146
A +VF M ++DV WNA+ IS A +
Sbjct: 170 ARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSG 229
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
R EA+ +F M + + +E+T +AVL+ACA +ELG E S + + +
Sbjct: 230 RASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELG-ERICSYVDHRGMNRAVSLN 288
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
V+D+ ++G +++A E S+ E + ++ HG
Sbjct: 289 NAVIDMYAKSGNITKALEVFESVN-ERNVVTWTTIITGLATHG 330
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY + +++SA LLF M RD++SWT++I + +N F EA+ VF M N +
Sbjct: 113 MIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEM--QTNGID 170
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +++S+CA L G L LGK++H Y + L V++G+ALID+Y K G L+++
Sbjct: 171 PDEVTMATIISACAHL---GALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKS 227
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + K++ WN++I LA + +EAL MF M+ + ++ N +TF++VL AC A
Sbjct: 228 LVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHA 287
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM F + P +EHYGC+VDLLG+AGLL +A E +RSM EP++ + GA
Sbjct: 288 GLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGA 347
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG CK+H + + L+P + G Y +L N++A + RW+ ++R M E G+
Sbjct: 348 LLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGV 407
Query: 301 RKI-PAYSLIE 310
K P S IE
Sbjct: 408 EKTSPGSSWIE 418
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P T+ S++ +C+ LV+E G G+ VHG+I + VF+ TAL+D YG G +
Sbjct: 6 VSPTSFTFSSLVKACS-LVSELGF--GEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIV 62
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +DV W MIS A A +FDEM + N ++ A++ +
Sbjct: 63 EARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----NTASWNAMIDGYS 118
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---------MRSM 229
R + VE EL S + +++ C S+ K+F M++
Sbjct: 119 RLRNVE-SAELLFSQMPNRDIISWTTMIAC----------YSQNKQFREALAVFNEMQTN 167
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+PD + ++ AC GA+DL E+ +E+
Sbjct: 168 GIDPDEVTMATIISACAHLGALDLGKEIHLYAMEM 202
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 44/189 (23%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y G + A +F+ M +RDV +WT++I+ R G A +F M VR
Sbjct: 51 LVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMP-----VR 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A++ A+ID Y ++ +E A
Sbjct: 106 -NTASW--------------------------------------NAMIDGYSRLRNVESA 126
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D+ +W MI+ + N + +EAL +F+EM+ G+ +E+T +++ACA
Sbjct: 127 ELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHL 186
Query: 181 QLVELGLEL 189
++LG E+
Sbjct: 187 GALDLGKEI 195
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 199/310 (64%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY K + A +F++M ++D+ +W +I+G+ ++G EA+ +F+ + + R
Sbjct: 415 IIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGAR 474
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S LS+CA L G + +G+ +HGYI + I L+ + T+LID+Y K G +E+A
Sbjct: 475 PDQVTLLSTLSACAQL---GAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKA 531
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF S+ KDV W+AMI+ LA + R + A+ +F +M+E ++ N +TF +L AC+ +
Sbjct: 532 IEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHS 591
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G LF M + VVP +HY C+VD+LGRAG L EA +F+ MP P ASV GA
Sbjct: 592 GLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGA 651
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG ++L + RLLE++P + G YV+LSN++A W ++LR+ M ++G+
Sbjct: 652 LLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGL 711
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 712 KKETGCSSIE 721
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 157/322 (48%), Gaps = 49/322 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I Y G +D A L+FE + +D+VSW S++ GFV+ G +A+ +F+ M
Sbjct: 281 LIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEG-- 338
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V PN T VSV+S+CA +N L LG++V YI RNE+++++ + A ID++ K G +E
Sbjct: 339 VHPNAVTMVSVMSACAKTMN---LTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVE 395
Query: 119 -------------------------------RAIRVFKSMVIKDVCTWNAMISSLASNSR 147
A +F SM KD+ WN +IS + R
Sbjct: 396 IARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGR 455
Query: 148 EKEALVMFDEMK--EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
KEAL +F E++ + G R +++T ++ L+ACA+ +++G E H + K +
Sbjct: 456 PKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLNRNL 514
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
++D+ ++G + +A E S+ D V A++ +HG + E+ + E Q
Sbjct: 515 ATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQ 573
Query: 266 PKHCGRYVVLSNI-----HAGL 282
K V +N+ H+GL
Sbjct: 574 VK--PNSVTFTNLLCACSHSGL 593
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ + + ++ SW +I + +++ VF M+ + + PN+ T+ ++
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHD-SPFGPNKFTFPVLI 247
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-- 128
+ A +GK VHG ++ VF+ +LI Y G L+ A VF+ +
Sbjct: 248 KAVA---ERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGN 304
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
KD+ +WN+M++ +AL +F+ M+ +G+ N +T V+V++ACA+ + LG
Sbjct: 305 NKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +D + +F + + D +SW SII G V+NG F E + F+ M+ + ++
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQML--IAKIK 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++ S++ +CA L L+LGKQ+HGYI+R+ +VF+ +AL+D+Y K G + A
Sbjct: 335 PNHVSFSSIMPACAHLTT---LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + D+ +W AMI A + +A+ +F M+ +G++ N + F+AVLTAC+ A
Sbjct: 392 RWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHA 451
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ + F+SM + ++P +EHY V DLLGR G L EA EF+ M EP SV
Sbjct: 452 GLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWST 511
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L +V ++L + P++ G YV+LSNI++ RW A LR AM + G+
Sbjct: 512 LLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGM 571
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 572 KKKPACSWIE 581
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+FE M KRD+VSW ++I+G +NG +A+ + + M GN +L RP+ T SVL A
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREM-GNADL-RPDSFTLSSVLPIFAEY 249
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
VN L GK++HGY +RN VF+G++LID+Y K ++ + RVF + D +WN
Sbjct: 250 VN---LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML-G 195
++I+ N E L F +M ++ N ++F +++ ACA + LG +L ++
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 366
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-AVDLC 254
+F+ + +VD+ + G + A+ M S ++G +HG A D
Sbjct: 367 RFDGNVFIA--SALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA-LHGHAYDAI 423
Query: 255 HEVGRRLLE-LQPKHCGRYVVLSNI-HAGL--ERW 285
R +E ++P + VL+ HAGL E W
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 458
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 35/198 (17%)
Query: 11 MDSAILLFENMLKRDV-VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
+ ++L+F ++ ++W SII + +G F ++ F M+ + P+ + SV
Sbjct: 55 LHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY--PDHNVFPSV 112
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA--------- 120
L SC + + L G+ VHG I+R + ++ AL+++Y K LE
Sbjct: 113 LKSCTLMKD---LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDE 169
Query: 121 --------------------IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
+VF+ M +D+ +WN +IS A N ++AL+M EM
Sbjct: 170 GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN 229
Query: 161 KGLRANEITFVAVLTACA 178
LR + T +VL A
Sbjct: 230 ADLRPDSFTLSSVLPIFA 247
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V GD+ SA LF +M KRD+VSW +II GFV++G A FK M + ++
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG--IK 612
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ +L++CA + L G+++H I V +GT LI +Y K G +E A
Sbjct: 613 PDKITFTGLLNACA---SPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + K+V +W +MI+ A + R KEAL +F +M+++G++ + ITFV L+ACA A
Sbjct: 670 HQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHA 729
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E GL F SM +F + P MEHYGC+VDL GRAGLL+EA EF+ M EPD+ V GA
Sbjct: 730 GLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V+L + ++ LEL P G +V+LSNI+A W +RK M++ G+
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 849 VKKPGQSWIE 858
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 153/296 (51%), Gaps = 38/296 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G+ SA +F++M ++DV SW ++ G+V++G + EA + + M+ + V+
Sbjct: 151 LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS--VK 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+VS+L++CA N + G++++ IL+ +F+GTALI+++ K G + A
Sbjct: 209 PDKRTFVSMLNACADARN---VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDA 265
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF ++ +D+ TW +MI+ LA + R K+A +F M+E+G++ +++ FV++L AC
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325
Query: 181 QLVELGLELFHSM---------------LGKFEVVPIMEHYGCVVDL------------- 212
+ +E G ++ M L + ME V DL
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 213 --LGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ G + EA F M EP+ ++LGAC A+ ++ ++E
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G M+ A+ +F+ + R+VVSWT++I GF ++G EA F M+ + + PN
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG--IEPNRV 414
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T++S+L +C+ + L G+Q+ +I+ + TAL+ +Y K G L+ A RVF
Sbjct: 415 TFMSILGACS---SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + ++V WNAMI++ + + AL F + ++G++ N TF ++L C + +E
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + H ++ K + + +V + G L AK MP
Sbjct: 532 LG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +FE + K++VV+W ++I +V++ + A+ F+ ++ ++PN +
Sbjct: 458 YAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG--IKPNSS 515
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L+ C + L LGK VH I++ + + + AL+ ++ G L A +F
Sbjct: 516 TFTSILNVCK---SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +WN +I+ + + + A F M+E G++ ++ITF +L ACA + +
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632
Query: 185 LGLELFHSML 194
G L H+++
Sbjct: 633 EGRRL-HALI 641
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 38/274 (13%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
+D +++N + G F EA+ V + + + + ++ TY ++L C N G
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERV--DSSHIQIYRQTYSALLQLCIKFKNLGD-- 128
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G++++ +I ++ + +FM LI++Y K G A ++F M KDV +WN ++
Sbjct: 129 -GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK------- 196
+ +EA + ++M + ++ ++ TFV++L ACA A+ V+ G EL++ +L
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247
Query: 197 ---------------------FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFE- 232
F+ +P + + ++ L R G +A + M E
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307
Query: 233 --PDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
PD +LL AC A++ +V R+ E+
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV 341
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 194/305 (63%), Gaps = 6/305 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY NG+M+ A LF+ M ++DVVSWT +I+G+ + C+ E + +F+ M N++
Sbjct: 247 MVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVL- 305
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVF-MGTALIDLYGKVGCLE 118
PNE T VSVLS+CA L L G+ H +I ++++VL S F +G ALID+Y K G +
Sbjct: 306 PNEVTMVSVLSACAHLT---ALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTD 362
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+++F S+ K+V WNA+I+ LA N + ++ +F++M+ G + N ITFV VLTACA
Sbjct: 363 LAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACA 422
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G F SM V P +HYGC+VD+LGRAGLL EA+E +RSMP PD +L
Sbjct: 423 HGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMIL 482
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC++H VD+ V +L L + G +V++S+I+A +W A R + +
Sbjct: 483 GALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKF 542
Query: 299 GIRKI 303
GI K+
Sbjct: 543 GISKL 547
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYVK G++ A +FE M +R+ VSW++++ + G + V + M + +
Sbjct: 152 MLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAG----ELDVAREMFDEMPAIG 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
N ++ S+++ G G L L +++ + +RN + + ++ Y G +
Sbjct: 208 RNVVSWNSMIT---GFARHGLLPLARKMFDEMPVRNLVSWNT-----MVRGYAVNGEMND 259
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACA 178
A +F M KDV +W MIS A E L +F M+ E + NE+T V+VL+ACA
Sbjct: 260 ARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACA 319
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G H+ + K ++V E ++D+ + G A + S+ + + S
Sbjct: 320 HLTALEEG-RWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLD-QKNVS 377
Query: 237 VLGALLGACKIHGAV 251
AL+ ++G V
Sbjct: 378 AWNALITGLAVNGDV 392
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D+V+W +++ G+V+ G GEA VF+ M + N ++ +++ + AG G L +
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQM------PQRNGVSWSAMVGAYAG---AGELDV 195
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+++ + I +V ++I + + G L A ++F M ++++ +WN M+ A
Sbjct: 196 AREMFDEM--PAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAV 253
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
N +A +FD M EK + +++ +++ A+A+ LELF +M + V+P
Sbjct: 254 NGEMNDARELFDRMPEKDV----VSWTCMISGYAQARCYTETLELFRAMQSESNVLP 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ S+L S + L + G QVH +R +++ VF+ L+ +Y
Sbjct: 76 PDRFTFPSLLKSASRLASFP--RTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSM 133
Query: 121 IRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF S + D+ TWN M+ EA +F++M ++ N +++ A++ A A
Sbjct: 134 REVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVFEQMPQR----NGVSWSAMVGAYAG 189
Query: 180 AQLVELGLELFHSM--LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
A +++ E+F M +G+ V + ++ R GLL A++ MP
Sbjct: 190 AGELDVAREMFDEMPAIGRNVV-----SWNSMITGFARHGLLPLARKMFDEMP 237
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 193/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GD D+A +F+ M + D+ +W ++I+ + +NG EA+ +F+ + N N +
Sbjct: 304 MIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN-TK 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T S L++CA L G + LG +H YI + I L+ + T+LID+Y K G LE+A
Sbjct: 363 PNEVTLASTLAACAQL---GAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKA 419
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF S+ +DV W+AMI+ LA + + A+ +F +M+E ++ N +TF +L AC+ +
Sbjct: 420 LEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHS 479
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + VVP +HY C+VD+LGRAG L EA E + MP P ASV GA
Sbjct: 480 GLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGA 539
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+G V+L RLLE + G YV+LSNI+A +W+ + LR+ M +G+
Sbjct: 540 LLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGL 599
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 600 EKEPGCSSIE 609
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 144/289 (49%), Gaps = 43/289 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+DSA L+F ++++D+VSW S+I+GFV+ G EA+ +FK M + R
Sbjct: 172 LIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM--KMENAR 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V VLS+CA ++ L G+ YI RN I +++ + A++D+Y K G LE A
Sbjct: 230 PNRVTMVGVLSACAKRID---LEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDA 286
Query: 121 IRVFKSMVIKDVCT-------------------------------WNAMISSLASNSREK 149
R+F M KD+ + WNA+ISS N + K
Sbjct: 287 RRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPK 346
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EAL +F E++ K + NE+T + L ACA+ ++LG H + K +
Sbjct: 347 EALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTS 405
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDL 253
++D+ + G L +A E S+ D V A++ +HG A+DL
Sbjct: 406 LIDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGHGRAAIDL 453
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ + + ++ +W ++I F + + + VF M+ PN T+ V+
Sbjct: 80 LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRF-PNSYTFPFVI 138
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + L G+ +HG +++ +F+ +LI Y +G L+ A VF +V K
Sbjct: 139 KAATEV---SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEK 195
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
D+ +WN+MIS +EAL +F MK + R N +T V VL+ACA+ +E G
Sbjct: 196 DIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG 251
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 197/314 (62%), Gaps = 10/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVN 57
++ GY + G +D A +FE M K++ VSW ++I FV+ F EA +F+ M +
Sbjct: 172 LVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKME 231
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L R AT +LS+C G+ G L G +H Y+ + IVL + T +ID+Y K GCL
Sbjct: 232 LDRFVAAT---MLSACTGV---GALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCL 285
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTA 176
++A VF + +K V +WN MI A + + ++A+ +F EM+E+ + A + ITFV VLTA
Sbjct: 286 DKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTA 345
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA + LVE G F M+ + P EHYGC+VDLL RAG L EAK+ + MP PDA+
Sbjct: 346 CAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAA 405
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGAC+IHG ++L EVG R++EL P++ GRYV+L N++A +W + +RK M
Sbjct: 406 VLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMD 465
Query: 297 EAGIRKIPAYSLIE 310
+ G++K P +S+IE
Sbjct: 466 DRGVKKEPGFSMIE 479
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 41/249 (16%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K+GD++ A+ LF + D + ++ F +F + M + V PN T+
Sbjct: 48 KHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQ-HCVTPNAFTF 106
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
S++ +C L E KQ+H ++L+ + LI +Y G L+ A RVF +
Sbjct: 107 PSLIRACK-LEEEA-----KQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCT 160
Query: 127 MVIKDVCTWN--------------------------------AMISSLASNSREKEALVM 154
M +V +W AMI+ +R +EA +
Sbjct: 161 MSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFAL 220
Query: 155 FDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
F M+ EK + + +L+AC +E G+ + H + K +V + ++D+
Sbjct: 221 FRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWI-HKYVEKTGIVLDSKLATTIIDMY 279
Query: 214 GRAGLLSEA 222
+ G L +A
Sbjct: 280 CKCGCLDKA 288
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 194/306 (63%), Gaps = 8/306 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY N DMD A LF+ M ++DVVSWT +I+G+ + G + + + +F+ M N V+
Sbjct: 125 MLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN-VQ 183
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
PNE T VSVLS+CA L L G+ VH +I ++++VL+ +G ALID+Y K G +
Sbjct: 184 PNEVTMVSVLSACANLT---ALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTD 240
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+++F S+ K+V WNA+I+ LA N ++++ F++MK G + N+ITFV VLTAC+
Sbjct: 241 IAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACS 300
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G F SM V P ++HYGC+VD+LGRAGLL EA+E +RSMP PD V
Sbjct: 301 HGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVF 360
Query: 239 GALLGACKIHGAVDLCHEVGRRL--LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
GALLGAC++H D+ V + L L + G +V++S+I+A +W + R+ +
Sbjct: 361 GALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQ 420
Query: 297 EAGIRK 302
+GIRK
Sbjct: 421 RSGIRK 426
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 18/253 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G+M+SA +F+ M +R+ VSW++++ G+ G + V + M + +
Sbjct: 30 VIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAG----ELDVAREMFDRMPAIG 85
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
N T+ S+++ G G L L +++ + +RN + + A++ Y ++
Sbjct: 86 RNVVTWNSMVT---GFARHGLLPLARKMFDEMPVRNLVSWN-----AMLRGYSVNSDMDG 137
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACA 178
A +F M KDV +W MIS A R ++ L +F M+ E ++ NE+T V+VL+ACA
Sbjct: 138 ARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACA 197
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G H+ + K ++V E+ ++D+ + G A + S+ + S
Sbjct: 198 NLTALEEG-RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLD-RKNVS 255
Query: 237 VLGALLGACKIHG 249
AL+ ++G
Sbjct: 256 AWNALITRLAMNG 268
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 50/236 (21%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V +I Y K G +E A RVF M ++ +W+ M+ A+ A MFD
Sbjct: 21 VADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDR 80
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--------------------- 196
M G N +T+ +++T AR L+ L ++F M +
Sbjct: 81 MPAIG--RNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGA 138
Query: 197 ---FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFE----PDASVLGALLGACK- 246
F+V+P + + C++ +AG + E R+M E P+ + ++L AC
Sbjct: 139 RELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 198
Query: 247 ---------IHGAVDLC-------HEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286
+H +D + +G L+++ K CGR + I L+R N
Sbjct: 199 LTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK-CGRTDIAVKIFNSLDRKN 253
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 129/273 (47%), Positives = 178/273 (65%), Gaps = 8/273 (2%)
Query: 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI 97
R GCF EA+ +F M +RP + SVLS+CA L G L G+ +H Y RN I
Sbjct: 231 RKGCFMEALEIFHQMQKEK--IRPRKFVLPSVLSACANL---GALDQGRWIHTYAKRNSI 285
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
L +GT+L+D+Y K G ++ A VF+ M K+V +WNAMI LA + R ++A+ +F +
Sbjct: 286 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 345
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M + NEITFV VL ACA LV+ GL +F+SM ++ V P +EHYGC+VDLLGRAG
Sbjct: 346 MD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 402
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277
LL+EA++ + S+P EP +V GALLGAC+ HG V+L VG+ LLEL+P++ GRY +LSN
Sbjct: 403 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSN 462
Query: 278 IHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
I+A RW ++RK M E GI+ P S+I+
Sbjct: 463 IYAKAGRWEEVGEVRKLMKERGIKTTPGTSIID 495
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 35/201 (17%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGC-----LERAIRVFKSMVIKDVCTWNAMIS 140
KQ H ILR + ++ +L+ Y V E ++RVF + +V WN MI
Sbjct: 72 KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF--- 197
N+ +A++++ EM R N+ T+ AVL AC+ A +V G+++ H+ L K
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV-HAHLVKHGLG 190
Query: 198 --------------------EVVPIMEHYGCVVD---LLGRAGLLSEAKEFMRSMPFE-- 232
E I++ G VD + R G EA E M E
Sbjct: 191 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKI 250
Query: 233 -PDASVLGALLGACKIHGAVD 252
P VL ++L AC GA+D
Sbjct: 251 RPRKFVLPSVLSACANLGALD 271
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+S++ +F+ + K +V W +I + N +AI ++ MM V RPN+ TY +VL
Sbjct: 108 FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMM--VAHFRPNKYTYPAVL 165
Query: 71 SSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF--KS 126
+C AG+V E G QVH +++++ + + ++ I +Y G L A R+ K
Sbjct: 166 KACSDAGVVAE-----GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG 220
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ VC + + EAL +F +M+++ +R + +VL+ACA ++ G
Sbjct: 221 GEVDAVCMPDRKGCFM-------EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 273
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
H+ + + +VD+ + G + A E M + S A++G
Sbjct: 274 -RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLA 331
Query: 247 IHG----AVDL 253
+HG A+DL
Sbjct: 332 MHGRAEDAIDL 342
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +FE M ++V SW ++I G +G +AI +F M ++N
Sbjct: 295 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM--DIN--- 349
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PNE T+V VL++CA GLV +G Y + +I ++DL G+ G L
Sbjct: 350 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHY----GCIVDLLGRAGLLT 405
Query: 119 RAIRVFKSMVIKDV-CTWNAMISS 141
A +V S+ + W A++ +
Sbjct: 406 EAEKVVSSIPTEPTPAVWGALLGA 429
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 193/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V GD+ SA LF +M KRD+VSW +II GFV++G A FK M + ++
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG--IK 612
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ +L++CA + L G+++H I V +GT LI +Y K G +E A
Sbjct: 613 PDKITFTGLLNACA---SPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + K+V +W +MI+ A + R KEAL +F +M+++G++ + ITFV L+ACA A
Sbjct: 670 HQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHA 729
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E GL F SM +F + P MEHYGC+VDL GRAGLL+EA EF+ M EPD+ V GA
Sbjct: 730 GLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V+L + ++ LEL P G +V+LSNI+A W +RK M++ G+
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 849 VKKPGQSWIE 858
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 153/296 (51%), Gaps = 38/296 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G+ SA +F++M ++DV SW ++ G+V++G + EA + + M+ + V+
Sbjct: 151 LINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS--VK 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+VS+L++CA N + G++++ IL+ +F+GTALI+++ K G + A
Sbjct: 209 PDKRTFVSMLNACADARN---VDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDA 265
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF ++ +D+ TW +MI+ LA + R K+A +F M+E+G++ +++ FV++L AC
Sbjct: 266 TKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325
Query: 181 QLVELGLELFHSM---------------LGKFEVVPIMEHYGCVVDL------------- 212
+ +E G ++ M L + ME V DL
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 213 --LGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ G + EA F M EP+ ++LGAC A+ ++ ++E
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G M+ A+ +F+ + R+VVSWT++I GF ++G EA F M+ + + PN
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG--IEPNRV 414
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T++S+L +C+ + L G+Q+ +I+ + TAL+ +Y K G L+ A RVF
Sbjct: 415 TFMSILGACS---SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + ++V WNAMI++ + + AL F + ++G++ N TF ++L C + +E
Sbjct: 472 EKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLE 531
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + H ++ K + + +V + G L AK MP
Sbjct: 532 LG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +FE + K++VV+W ++I +V++ + A+ F+ ++ ++PN +
Sbjct: 458 YAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG--IKPNSS 515
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L+ C + L LGK VH I++ + + + AL+ ++ G L A +F
Sbjct: 516 TFTSILNVCK---SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +WN +I+ + + + A F M+E G++ ++ITF +L ACA + +
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632
Query: 185 LGLELFHSML 194
G L H+++
Sbjct: 633 EGRRL-HALI 641
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 38/274 (13%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
+D +++N + G F EA+ V + + + + ++ TY ++L C N G
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERV--DSSHIQIYRQTYSALLQLCIKFKNLGD-- 128
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G++++ +I ++ + +FM LI++Y K G A ++F M KDV +WN ++
Sbjct: 129 -GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK------- 196
+ +EA + ++M + ++ ++ TFV++L ACA A+ V+ G EL++ +L
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247
Query: 197 ---------------------FEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMPFE- 232
F+ +P + + ++ L R G +A + M E
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307
Query: 233 --PDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
PD +LL AC A++ +V R+ E+
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV 341
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 194/306 (63%), Gaps = 8/306 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY N DMD A LF+ M ++DVVSWT +I+G+ + G + + + +F+ M N V+
Sbjct: 263 MLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN-VQ 321
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
PNE T VSVLS+CA L L G+ VH +I ++++VL+ +G ALID+Y K G +
Sbjct: 322 PNEVTMVSVLSACANLT---ALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTD 378
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+++F S+ K+V WNA+I+ LA N ++++ F++MK G + N+ITFV VLTAC+
Sbjct: 379 IAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACS 438
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G F SM V P ++HYGC+VD+LGRAGLL EA+E +RSMP PD V
Sbjct: 439 HGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVF 498
Query: 239 GALLGACKIHGAVDLCHEVGRRL--LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
GALLGAC++H D+ V + L L + G +V++S+I+A +W + R+ +
Sbjct: 499 GALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQ 558
Query: 297 EAGIRK 302
+GIRK
Sbjct: 559 RSGIRK 564
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 17/233 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G+M+SA +F+ M +R+ VSW++++ G+ G + V + M + +
Sbjct: 168 VIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAG----ELDVAREMFDRMPAIG 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
N T+ S+++ G G L L +++ + +RN + + A++ Y ++
Sbjct: 224 RNVVTWNSMVT---GFARHGLLPLARKMFDEMPVRNLVSWN-----AMLRGYSVNSDMDG 275
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACA 178
A +F M KDV +W MIS A R ++ L +F M+ E ++ NE+T V+VL+ACA
Sbjct: 276 ARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACA 335
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSM 229
+E G H+ + K ++V E+ ++D+ + G A + S+
Sbjct: 336 NLTALEEG-RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSL 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 106/281 (37%), Gaps = 82/281 (29%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYG-------------------------------- 112
G QVH +R + VF+ AL+ +YG
Sbjct: 114 GAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYV 173
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K G +E A RVF M ++ +W+ M+ A+ A MFD M G N +T+ +
Sbjct: 174 KCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG--RNVVTWNS 231
Query: 173 VLTACARAQLVELGLELFHSMLGK------------------------FEVVPIME--HY 206
++T AR L+ L ++F M + F+V+P + +
Sbjct: 232 MVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSW 291
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFE----PDASVLGALLGACK----------IHGAVD 252
C++ +AG + E R+M E P+ + ++L AC +H +D
Sbjct: 292 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFID 351
Query: 253 LC-------HEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286
+ +G L+++ K CGR + I L+R N
Sbjct: 352 KHKMVLNNEYNLGAALIDMYAK-CGRTDIAVKIFNSLDRKN 391
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 188/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ S+ +F+ M RD ++W + I+ + +NG EAI +F +M N V
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENG--VD 317
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T +VLS+CA + G L LGKQ+ Y + +F+ TALID+Y K G LE A
Sbjct: 318 PNKVTLTAVLSACASI---GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVF M K+ +WNAMIS+LAS+ + KEAL +F+ M ++G R N+ITFV++L+AC
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G LF M F +VP +EHY C+VDLL RAG L EA + + MP +PD L
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL AC+ VD+ V + LLEL P + G Y++ S I+ L W+ A +R M E
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 555 GVTKTPGCSWIE 566
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 137/253 (54%), Gaps = 14/253 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G+ A +F+ + ++D+VSW S+++G+ + G EA+ VF +
Sbjct: 158 MVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF-E 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VSVL +C L G L LG+ V G+++ + ++ ++G+ALI +Y K G L +
Sbjct: 217 PDEMSLVSVLGACGEL---GDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSS 273
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +D TWNA IS+ A N EA+ +F MKE G+ N++T AVL+ACA
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333
Query: 181 QLVELGLELFHSMLGKFEVVPIMEH----YGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
++LG + + ++ ++H ++D+ + G L A+ MP + DAS
Sbjct: 334 GALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS 388
Query: 237 VLGALLGACKIHG 249
A++ A HG
Sbjct: 389 -WNAMISALASHG 400
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 37/229 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ PN T+ V +CA L + + + H + + + +++ +Y + G
Sbjct: 113 ISPNNFTFPFVFLACANLEE---IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG 169
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTAC 177
A +VF + KD+ +WN+++S A +EA+ +F ++E+ G +E++ V+VL AC
Sbjct: 170 VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229
Query: 178 ARAQLVELG--LELF--------HSMLGK------------------FEVVPIMEH--YG 207
+ELG +E F +S +G F+ +P + +
Sbjct: 230 GELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWN 289
Query: 208 CVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
+ + G+ EA SM +P+ L A+L AC GA+DL
Sbjct: 290 AAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDL 338
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 192/312 (61%), Gaps = 5/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+I+ + G +D A LF M +R+V+SW+ +ING+VR G + EA+ +F+ M M VN V
Sbjct: 136 IINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 195
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPNE T VL++C L G L GK H YI + + + V +GTALID+Y K G +E+
Sbjct: 196 RPNEFTMSGVLAACGRL---GALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEK 252
Query: 120 AIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF ++ KDV W+AMIS LA + +E + +F +M +G+R N +TF+AV AC
Sbjct: 253 ATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACV 312
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV G + M + ++P ++HYGC+VDL GRAG + EA ++SMP EPD V
Sbjct: 313 HGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVW 372
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL ++HG ++ C ++L+EL+P + G YV+LSN++A RW +R M
Sbjct: 373 GALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETM 432
Query: 299 GIRKIPAYSLIE 310
GI+K+P SLIE
Sbjct: 433 GIKKVPGCSLIE 444
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 29 WTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
W ++I V+ G I +F M + V+P+ T+ +L S A + L+
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRM--RFHGVQPDFHTFPFLLQSFA---SPSLLH 81
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS-- 141
LG+ VH ILR + + F+ T+LI +Y G L A +VF + D+ +WN++I++
Sbjct: 82 LGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANF 141
Query: 142 ------LASN-----------------------SREKEALVMFDEMKEKG---LRANEIT 169
+A N + KEAL +F EM+ G +R NE T
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
VL AC R +E G + H+ + K + + ++D+ + G + +A ++
Sbjct: 202 MSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNL 260
Query: 230 PFEPDASVLGALLGACKIHGAVDLC 254
D A++ +HG + C
Sbjct: 261 GPNKDVMAWSAMISGLAMHGLAEEC 285
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 9/310 (2%)
Query: 5 YVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
Y K G++ A +FE M + +D V WT++I+GFVRN A+ F+ M G VR
Sbjct: 182 YGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN--VR 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+C+ L G L +G+ VH Y+ + EI L++F+G ALI++Y + G ++ A
Sbjct: 240 PNEFTIVCVLSACSQL---GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV T+N MIS L+ N + ++A+ +F M + LR +TFV VL AC+
Sbjct: 297 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 356
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+FHSM + V P +EHYGC+VDLLGR G L EA + +R+M PD +LG
Sbjct: 357 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 416
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H ++L +V + L + G YV+LS+++A +W A +R M EAG+
Sbjct: 417 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 477 QKEPGCSSIE 486
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 16/260 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ +V +T++I+GFV +G + EAI ++ M+ L P+ S+L
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESIL--PDNYLMASIL 144
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--- 127
+C + L G++VH L+ + + +++LYGK G L A RVF+ M
Sbjct: 145 KACGSQL---ALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 201
Query: 128 -VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
V KD W AMI N AL F M+ + +R NE T V VL+AC++ +E+G
Sbjct: 202 VVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 261
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
HS + KFE+ + ++++ R G + EA+ M + D ++
Sbjct: 262 -RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLS 319
Query: 247 IHG----AVDLCH-EVGRRL 261
++G A++L VGRRL
Sbjct: 320 MNGKSRQAIELFRVMVGRRL 339
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + G +D A +F+ M RDV+++ ++I+G NG +AI +F+ M+G +R
Sbjct: 283 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVG--RRLR 340
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T+V VL++C+ GLV+ G Y + +I ++DL G+VG LE
Sbjct: 341 PTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIE----HYGCMVDLLGRVGRLE 396
Query: 119 RAIRVFKSM 127
A + ++M
Sbjct: 397 EAYDLIRTM 405
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H ++RN FM L+ K ++ A R+F+ +V + A+I S+
Sbjct: 58 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ ++ M + + + ++L AC + G E+ HS K
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREV-HSRALKLGFSSNRLVRL 176
Query: 208 CVVDLLGRAGLLSEAKEFMRSMP 230
+++L G+ G L +A+ MP
Sbjct: 177 RIMELYGKCGELGDARRVFEEMP 199
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G MD A +F+ M +RDV W +++ G+V+ EA+ +F +M +V
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDM--QEAMVE 351
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V++LS+C+ L G L +G VH YI R + LSV +GT L+D+Y K G +E+A
Sbjct: 352 PDDITMVNLLSACSQL---GALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKA 408
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
IRVFK + K+ TW AMIS LA++ A+ F M E GL+ +EITF+ VL+AC A
Sbjct: 409 IRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHA 468
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F M+ K+ + M+HY C+VDLLGRAG L EA+ + +MP EPDA V GA
Sbjct: 469 GLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGA 528
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC++HG + L + +L+EL P G YV+L+N++A +A +R M G+
Sbjct: 529 LFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGV 588
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 589 EKVPGCSCIE 598
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 40/306 (13%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ RD+VSW ++I G+VR G EA+ +F M+G+ V P+E T + V+
Sbjct: 171 MAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGD-GAVTPDEVTMIGVV 229
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI--------- 121
S A L + L LG+++HGY+ + + +V + ++D+Y K G LERA
Sbjct: 230 SGSAQLRD---LELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKK 286
Query: 122 ----------------------RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+VF M +DV WNA+++ R KEAL +F +M+
Sbjct: 287 TIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQ 346
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
E + ++IT V +L+AC++ +E+G+ + H + + + +M +VD+ + G +
Sbjct: 347 EAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTN-LVDMYSKCGNI 405
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN 277
+A + +P E +A A++ HG D+ + +R++E LQP VLS
Sbjct: 406 EKAIRVFKEIP-EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSA 464
Query: 278 -IHAGL 282
HAGL
Sbjct: 465 CCHAGL 470
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 5/165 (3%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T+ +L +CA L G V G +L VF+ A + +
Sbjct: 117 RPDHLTFPFLLKACARLQERN---YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAE 173
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
A ++F ++D+ +WN +I +EAL MF M G + +E+T + V++ A
Sbjct: 174 ARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSA 233
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ + +ELG L H + V + V+D+ + G L AK
Sbjct: 234 QLRDLELGRRL-HGYVESHGVRCTVRLMNVVMDMYIKCGDLERAK 277
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 188/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ S+ +F+ M RD ++W + I+ + +NG EAI +F +M N V
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENG--VD 317
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T +VLS+CA + G L LGKQ+ Y + +F+ TALID+Y K G LE A
Sbjct: 318 PNKVTLTAVLSACASI---GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
RVF M K+ +WNAMIS+LAS+ + KEAL +F+ M ++G R N+ITFV++L+AC
Sbjct: 375 QRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACV 434
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G LF M F +VP +EHY C+VDLL RAG L EA + + MP +PD L
Sbjct: 435 HAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL AC+ VD+ V + LLEL P + G Y++ S I+ L W+ A +R M E
Sbjct: 495 GALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMREN 554
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 555 GVTKTPGCSWIE 566
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 137/253 (54%), Gaps = 14/253 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G+ A +F+ + ++D+VSW S+++G+ + G EA+ VF +
Sbjct: 158 MVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF-E 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VSVL +C L G L LG+ V G+++ + ++ ++G+ALI +Y K G L +
Sbjct: 217 PDEMSLVSVLGACGEL---GDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSS 273
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +D TWNA IS+ A N EA+ +F MKE G+ N++T AVL+ACA
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333
Query: 181 QLVELGLELFHSMLGKFEVVPIMEH----YGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
++LG + + ++ ++H ++D+ + G L A+ MP + DAS
Sbjct: 334 GALDLGKQ-----MDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS 388
Query: 237 VLGALLGACKIHG 249
A++ A HG
Sbjct: 389 -WNAMISALASHG 400
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 37/229 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ PN T+ V +CA L + + + H + + + +++ +Y + G
Sbjct: 113 ISPNNFTFPFVFLACANLEE---IRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG 169
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTAC 177
A +VF + KD+ +WN+++S A +EA+ +F ++E+ G +E++ V+VL AC
Sbjct: 170 VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229
Query: 178 ARAQLVELG--LELF--------HSMLGK------------------FEVVPIMEH--YG 207
+ELG +E F +S +G F+ +P + +
Sbjct: 230 GELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWN 289
Query: 208 CVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
+ + G+ EA SM +P+ L A+L AC GA+DL
Sbjct: 290 AAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDL 338
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY GD+ A +F+ RD SW+S+I+ + + C EA+ +++ M V V
Sbjct: 153 MIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM--RVAGVA 210
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + VSVLS+C+ + G L +G +VH ++ N + + + +GTAL+D+Y K G +E +
Sbjct: 211 PDCISMVSVLSACSAM---GALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENS 267
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF +M +KDV TW++MI LA++ +AL +F EM +GL+ NEITF+ VL AC
Sbjct: 268 LKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHV 327
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F SM VVP MEHYGC+VDLLGRAG + EA E +RSM F+PD +
Sbjct: 328 GLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRT 387
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V++ E +L L P G YV+LSNI+A W ++RK + I
Sbjct: 388 LLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENI 447
Query: 301 RKIPAYSLIE 310
+++P S IE
Sbjct: 448 QRVPGRSSIE 457
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 32/161 (19%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN------------------------ 136
VF+ ++ Y G + A +VF M +D+ +WN
Sbjct: 116 VFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRD 175
Query: 137 -------AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+MIS+ A KEAL ++ EM+ G+ + I+ V+VL+AC+ + +G E+
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
H + V M+ +VD+ + G + + + +MP
Sbjct: 236 -HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMP 275
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 84 LGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIR--VFKSMVIKDVCTWNAMIS 140
LG +H LR+ + +F+ TAL+++Y K E A+ F +DV N M++
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
+ + EA +FD M + L +++ ++ A V + E+F +
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDL----VSWNTMIHGYAVRGDVGMAREIFDGTRDRDAF- 179
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDLCHEV 257
+ ++ + EA E R M PD + ++L AC GA+ + EV
Sbjct: 180 ----SWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235
Query: 258 GR 259
R
Sbjct: 236 HR 237
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 194/306 (63%), Gaps = 8/306 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY N DMD A LF+ M ++DVVSWT +I+G+ + G + + + +F+ M N V+
Sbjct: 263 MLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESN-VQ 321
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
PNE T VSVLS+CA L L G+ VH +I ++++VL+ +G ALID+Y K G +
Sbjct: 322 PNEVTMVSVLSACANLT---ALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTD 378
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+++F S+ K+V WNA+I+ LA N ++++ F++MK G + N+ITFV VLTAC+
Sbjct: 379 IAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACS 438
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G F SM V P ++HYGC+VD+LGRAGLL EA+E +RSMP PD V
Sbjct: 439 HGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVF 498
Query: 239 GALLGACKIHGAVDLCHEVGRRL--LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
GALLGAC++H D+ V + L L + G +V++S+I+A +W + R+ +
Sbjct: 499 GALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQ 558
Query: 297 EAGIRK 302
+GIRK
Sbjct: 559 RSGIRK 564
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 17/233 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G+M+SA +F+ M +R+ VSW++++ G+ G + V + M + +
Sbjct: 168 VIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAG----ELDVAREMFDRMPAIG 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
N T+ S+++ G G L L +++ + +RN + + A++ Y ++
Sbjct: 224 RNVVTWNSMVT---GFARHGLLPLARKMFDEMPVRNLVSWN-----AMLRGYSVNSDMDG 275
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACA 178
A +F M KDV +W MIS A R ++ L +F M+ E ++ NE+T V+VL+ACA
Sbjct: 276 ARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACA 335
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSM 229
+E G H+ + K ++V E+ ++D+ + G A + S+
Sbjct: 336 NLTALEEG-RWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSL 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 106/281 (37%), Gaps = 82/281 (29%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYG-------------------------------- 112
G QVH +R + VF+ AL+ +YG
Sbjct: 114 GAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYV 173
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K G +E A RVF M ++ +W+ M+ A+ A MFD M G N +T+ +
Sbjct: 174 KCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG--RNVVTWNS 231
Query: 173 VLTACARAQLVELGLELFHSMLGK------------------------FEVVPIME--HY 206
++T AR L+ L ++F M + F+V+P + +
Sbjct: 232 MVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSW 291
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFE----PDASVLGALLGACK----------IHGAVD 252
C++ +AG + E R+M E P+ + ++L AC +H +D
Sbjct: 292 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFID 351
Query: 253 LC-------HEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286
+ +G L+++ K CGR + I L+R N
Sbjct: 352 KHKMVLNNEYNLGAALIDMYAK-CGRTDIAVKIFNSLDRKN 391
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +++A +F+ M R++ +W+ +ING+ +N CF +AI +F+ M V
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM--KREGVV 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L G++ + Y++++ + +++ +GTAL+D++ + G +E+A
Sbjct: 247 ANETVMVSVISSCAHL---GALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + D +W+++I LA + +A+ F +M G ++TF AVL+AC+
Sbjct: 304 IHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHG 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLE++ +M + P +EHYGC+VD+LGRAG L+EA+ F+ M +P+A +LGA
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGA 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKI+ ++ VG L++++P+H G YV+LSNI+A +W++ LR M E +
Sbjct: 424 LLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 484 KKPPGWSLIE 493
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+++ Y K G +E A +F M +++ TW+ MI+ A N+ ++A+ +F+ MK +G+
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
ANE V+V+++CA +E G + ++ V ++ +VD+ R G + +A
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIH 305
Query: 225 FMRSMPFEPDASVLGALLGACKIHG 249
+P E D+ +++ +HG
Sbjct: 306 VFEGLP-ETDSLSWSSIIKGLAVHG 329
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL------YGK-VGCLER 119
+++L SC+ + K +HG++LR ++ VF+ + L+ L + K L
Sbjct: 16 LALLQSCSSFSDL------KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGY 69
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F + ++ +N +I ++ + +A + +M + + + ITF ++ A +
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ V +G E HS + +F + +V + G ++ A M F S
Sbjct: 130 MECVLVG-EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ G CK G V+ E+ E+ ++ + ++ N +A + +A DL + M G
Sbjct: 189 MVAGYCKC-GMVENAREM---FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREG 244
Query: 300 I 300
+
Sbjct: 245 V 245
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +D + +F + + D +SW SII G V+NG F E + F+ M+ + ++
Sbjct: 237 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQML--IAKIK 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++ S++ +CA L L+LGKQ+HGYI+R+ +VF+ +AL+D+Y K G + A
Sbjct: 295 PNHVSFSSIMPACAHLTT---LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTA 351
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + D+ +W AMI A + +A+ +F M+ +G++ N + F+AVLTAC+ A
Sbjct: 352 RWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHA 411
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ + F+SM + ++P +EHY V DLLGR G L EA EF+ M EP SV
Sbjct: 412 GLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWST 471
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L +V ++L + P++ G YV+LSNI++ RW A LR AM + G+
Sbjct: 472 LLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGM 531
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 532 KKKPACSWIE 541
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+FE M KRD+VSW ++I+G +NG +A+ + + M GN +L RP+ T SVL A
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREM-GNADL-RPDSFTLSSVLPIFAEY 209
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
VN L GK++HGY +RN VF+G++LID+Y K ++ + RVF + D +WN
Sbjct: 210 VN---LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 266
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML-G 195
++I+ N E L F +M ++ N ++F +++ ACA + LG +L ++
Sbjct: 267 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 326
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-AVDLC 254
+F+ + +VD+ + G + A+ M S ++G +HG A D
Sbjct: 327 RFDGNVFIA--SALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA-LHGHAYDAI 383
Query: 255 HEVGRRLLE-LQPKHCGRYVVLSNI-HAGL--ERW 285
R +E ++P + VL+ HAGL E W
Sbjct: 384 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 418
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+VF+ M +D+ +WN +IS A N ++AL+M EM LR + T +VL A
Sbjct: 151 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 207
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +++A+ LF+ ML RD++SWT+++NGFV+ G EA+ F+ M ++ V+
Sbjct: 93 MIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREM--QISGVK 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++++ A N G L G +H Y++ + +V + +LIDLY + GC+E A
Sbjct: 151 PD---YVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFA 207
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN++I A+N E+L F +M+E+G + + +TF LTAC+
Sbjct: 208 RQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHV 267
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F +M + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 268 GLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS 327
Query: 241 LLGACKIHGAVDLCHE-VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL ACK HG L E + + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 328 LLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 387
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 388 LKKQPGFSSIE 398
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCL 117
V PN T++++LS C G G LG +HGY + + + V +GTA++ +Y K G
Sbjct: 14 VEPNHITFIALLSGC-GDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF 72
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+A +F M K+ TWN MI + + A+ +FDEM + L I++ A++
Sbjct: 73 RKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDL----ISWTAMVNGF 128
Query: 178 ARAQLVELGLELFHSM 193
+ E L F M
Sbjct: 129 VKKGFHEEALSWFREM 144
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++NG +D+A +F+ M D VSWT++I+GFV+NG EAI F+ M+ ++ V
Sbjct: 144 MISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML--LDGVE 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V+V+S+CA + G L LG VH +LR + +V + +LID+Y + G + A
Sbjct: 202 TDYITLVAVVSACAEV---GALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+S+ + V +WN+MI A+N R +A+ +F+EM+ +G + + +T VLTAC+ A
Sbjct: 259 AQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHA 318
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L E GL + M ++ V MEHYGCVVDLLGRAG L EA + +MP P+ VLGA
Sbjct: 319 GLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGA 378
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+ HG +D+ ++ + L EL P+ YV+LSNI+A + +W+ A +R M G+
Sbjct: 379 LLAGCRTHGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGV 438
Query: 301 RKIPAYSLIE 310
+K P +S +E
Sbjct: 439 KKRPGHSTVE 448
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 32/238 (13%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE--- 79
RDVVSWTS I+ R G A M+ + PN+ T ++VLS+CA +
Sbjct: 29 PRDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPLA 88
Query: 80 -------------------------GGLYLGKQVHGYILR---NEIVLSVFMGTALIDLY 111
YL ++ L+ + V SV +I
Sbjct: 89 SPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMISGL 148
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
+ G ++ A VF M D +W A+I N R EA+ F M G+ + IT V
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLV 208
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
AV++ACA + LG+ + H ++ + + + ++D+ R G ++ A + RS+
Sbjct: 209 AVVSACAEVGALGLGMWV-HRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSI 265
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 195/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GDM SA LF+ ++DVV+W+++I+G+ RN EA+ +F M+ ++N V+
Sbjct: 239 MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMV-SMN-VK 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+E VS++S+C+ L N L K V Y+ + I + ALID++ K G +E+
Sbjct: 297 PDEFIMVSLMSACSQLGNSD---LAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEK 353
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+++F+ M +D+ ++I L+ + R EA+ +F+ M ++GL + + F +LTAC+R
Sbjct: 354 AVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSR 413
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+E G F +M K+ VVP HY C+VDLL RAG L A + ++SMP +P A G
Sbjct: 414 GGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWG 473
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG V+L EV RLLEL+P+ G YV+LSNI+A +W + +R M E G
Sbjct: 474 ALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERG 533
Query: 300 IRKIPAYSLI 309
IRKIP S I
Sbjct: 534 IRKIPGCSYI 543
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 18/279 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K ++ SA +F+ + +R+VVSWT+++ G+ G A VF+ M
Sbjct: 146 LISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERM-------- 197
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E S + +GL G L ++V ++ +V T +ID Y KVG + A
Sbjct: 198 -PERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVV----SFTVMIDGYAKVGDMASA 252
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F KDV W+A+IS + N + EA+ +F EM ++ +E V++++AC++
Sbjct: 253 RALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQL 312
Query: 181 QLVELGLELFHSMLGKFEVVPIMEH-YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+L + S L + + H ++D+ + G + +A + + MP D
Sbjct: 313 GNSDLA-KWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSR-DLIPCC 370
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLS 276
+L+ IHG E+ R+L+ L P V+L+
Sbjct: 371 SLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILT 409
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 51/330 (15%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F +L + ++ F +N F + +F M + ++ TY ++ C+
Sbjct: 60 IFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQS-EYALSDKYTYPLLIKVCS-- 116
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----------------------- 113
NE L G+ VHG +R + V++G++LI YGK
Sbjct: 117 -NELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWT 175
Query: 114 --------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
VG LE A RVF+ M +++ +WNAMIS L A +FDEM E+
Sbjct: 176 AMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVER---- 231
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
N ++F ++ A+ + LF K V + ++ R +EA +
Sbjct: 232 NVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVA-----WSALISGYSRNEQPNEAVKI 286
Query: 226 ---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNIHA 280
M SM +PD ++ +L+ AC G DL V L + + + L ++HA
Sbjct: 287 FFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHA 346
Query: 281 GLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+A L + M + IP SLI+
Sbjct: 347 KCGNMEKAVKLFQDMPSRDL--IPCCSLIQ 374
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G V++G +D A LF++M +RD ++WT++I+G+V+ G F +A+ F+ M + VR
Sbjct: 233 VISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYM--QICKVR 290
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++CA L G L G+ Y+ R I + VF+G ALID+Y K G +ERA
Sbjct: 291 ADEFTMVSVVTACAQL---GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M +D TW A+I LA N R +EA+ MF M +E+TFV VLTAC A
Sbjct: 348 LDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHA 407
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F SM + + P + HYGC++D+LGRAG L EA + + MP +P++++ G
Sbjct: 408 GLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGT 467
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+++G ++ RLLEL P + Y++LSN++A RW +R+ ++E GI
Sbjct: 468 LLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGI 527
Query: 301 RKIPAYSLIE 310
+K P S+IE
Sbjct: 528 KKEPGCSMIE 537
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 41/248 (16%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
V W ++I+G R+G F + C F +M+ + TYVSVLS+C L LG
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMA--TAVTYVSVLSACG---KGKDLLLGM 181
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
QVH +L + ++ + AL+D+Y + G ++ A +F+ M ++ + +W ++IS L +
Sbjct: 182 QVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSG 241
Query: 147 REKEALVMFDEMKEKG-------------------------------LRANEITFVAVLT 175
+ A +FD M E+ +RA+E T V+V+T
Sbjct: 242 QVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVT 301
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PF 231
ACA+ +E G E +G+ + + ++D+ + G + A + + M F
Sbjct: 302 ACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKF 360
Query: 232 EPDASVLG 239
A +LG
Sbjct: 361 TWTAIILG 368
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
WNA+IS + R + + F +M A +T+V+VL+AC + + + LG+++ H +
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQV-HKRV 187
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGAV 251
+ V+P +VD+ G + A M A SV+ L+ + ++ A
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247
Query: 252 DLCHEVGRR 260
DL + R
Sbjct: 248 DLFDHMPER 256
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV--NL 58
++DGY K D+ +A +F+ M RDVVSW+++I+G V+ G + EA+ +F+ M +
Sbjct: 133 LLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAATGHG 192
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VR N+ T +S+L +CA L G L G+Q+H Y+ +L++ + T+L+D+Y K G +
Sbjct: 193 VRANDVTMISMLGACAHL---GDLRRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGAIS 249
Query: 119 RAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A+ VF+++ + DV WNAMI LA + E + +F EM+ G+ +EIT++ +L+A
Sbjct: 250 EALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPDEITYLGLLSA 309
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C LV+ F S+ + + P +EHY C+VD+L RAG L EA ++SMP EP S
Sbjct: 310 CVHGGLVDEAWRFFCSLEAQ-GLRPHVEHYACLVDVLSRAGRLEEAYGVVKSMPMEPSVS 368
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGA+L AC +HG V+L VGR+L+ LQP H GRY+ LSNI+A +RW A RK M
Sbjct: 369 VLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYAVAKRWQEAKKARKVMS 428
Query: 297 EAGIRKIPAYSLIE 310
E G++KIP +S I+
Sbjct: 429 ERGLKKIPGFSEID 442
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---- 160
AL+D Y K L A VF M +DV +W+AMI +EAL +F+ M+
Sbjct: 131 NALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAATG 190
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
G+RAN++T +++L ACA + G ++ H L + + + +VD+ + G +S
Sbjct: 191 HGVRANDVTMISMLGACAHLGDLRRGRQM-HRYLQERGFLLNLRLATSLVDMYAKCGAIS 249
Query: 221 EAKEFMRSMPF-EPDASVLGALLGACKIHG 249
EA E R++P D + A++G +HG
Sbjct: 250 EALEVFRAVPVASTDVLMWNAMIGGLAVHG 279
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++NG +D A+ LF+ M +RD++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 89 MIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREM--QISGVK 146
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++++ A N G L G +H Y++ + +V + +LIDLY + GC+E A
Sbjct: 147 PD---YVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFA 203
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN++I A+N E+LV F +M+E+G + N +TF L AC
Sbjct: 204 RQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHV 263
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 264 GLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS 323
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ G L V + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 324 LLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 383
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 384 LKKEPGFSSIE 394
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCL 117
V PN T++++LS L++ G LG +HGY + + + V +GTA++ +Y K G
Sbjct: 10 VEPNHITFIALLSGWGDLLS-GSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRF 68
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+A VF M K+ TWN MI N + +A+ +FDEM E+ L I++ A++
Sbjct: 69 RKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDL----ISWTAMINGF 124
Query: 178 ARAQLVELGLELFHSM 193
+ E L F M
Sbjct: 125 VKKGFHEEALAWFREM 140
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++ YVK G +D L+F++M +RDVV W+++I G+ +NG EA+ +F+ M ++
Sbjct: 47 MLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSA--QIK 104
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G + G+++ Y+ ++ +V++ +AL+ +Y K G + +A
Sbjct: 105 PNDVTLVSVLSACAQL---GSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKA 161
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +D TWN+MI LA N ++A+ +++ MKE ++ N ITFV +LTAC A
Sbjct: 162 RQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHA 221
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VELGLE F SM + P +EH+ C+VDL R+G L +A EF+ M EP+ + G
Sbjct: 222 GHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGT 281
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH V+L G++LLEL+P + G YV+LSNI+A RW A +RK M + +
Sbjct: 282 LLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRV 341
Query: 301 RKIPAYSLIE 310
+K AYS +E
Sbjct: 342 QKAAAYSWVE 351
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 5/210 (2%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ PBE T +VLS CA L G L +G ++ + ++ + TA++++Y K G +
Sbjct: 1 MCEPBEITLATVLSICAKL---GDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAV 57
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ VF M +DV W+AMI+ A N R EAL +F+ MK ++ N++T V+VL+AC
Sbjct: 58 DDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSAC 117
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A+ VE G E S + ++ + ++ + + G + +A++ +P + D
Sbjct: 118 AQLGSVETG-ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVT 175
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPK 267
+++ I+G + + R+ E++ K
Sbjct: 176 WNSMIMGLAINGFAEDAIALYNRMKEIEVK 205
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY G++ A LF+ M R+ VSW ++ G+V + + EA+ F +M+ + + V+
Sbjct: 229 VVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCH-DEVK 287
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEA VS+LS+CA L G L GK +H YI +N I+LS + TALID+Y K G ++ A
Sbjct: 288 PNEAVLVSILSACAHL---GALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCA 344
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + +D+ TW +MIS L+ + E L F EM +G + ++IT + VL C+ +
Sbjct: 345 RRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHS 404
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL +FH M+ + +VP +EHYGC++DLLGRAG L A E ++SMP EPD A
Sbjct: 405 GLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRA 464
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+IHG VDL + + EL P H G YV+LSN++A + +W T +RKAM + G
Sbjct: 465 LLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRG 524
Query: 300 IRKIPAYSLIE 310
P S IE
Sbjct: 525 SEGCPGCSWIE 535
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 92/202 (45%), Gaps = 7/202 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y+ ++ A ++F+ + W +I + + E++ +F M+ +
Sbjct: 93 LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
++ T+ V ++C+ G G+ VHG ++++ +F+G +L+++Y +
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGY--GENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVD 210
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF M +DV TW +++ A A +FD M + N++++ ++
Sbjct: 211 AKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGR----NDVSWAVMVAGYVG 266
Query: 180 AQLVELGLELFHSMLGKFEVVP 201
+ L+ F+ ML EV P
Sbjct: 267 HRFYNEALQCFNDMLCHDEVKP 288
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 195/307 (63%), Gaps = 4/307 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G M+ A +F+ + ++D +SW +++ G+ +NG EAI + NMM
Sbjct: 365 LVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY-NMMEECRDTI 423
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS++ + + + G L G ++H +++N + L VF+ T LIDLYGK G LE A
Sbjct: 424 PNQGTWVSIIPAYSHV---GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + WNA+I+SL + R +EAL +F +M + ++A+ ITFV++L+AC+ +
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M ++ + P ++HYGC+VDLLGRAG L +A E +R+MP +PDAS+ GA
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKI+G +L RLLE+ ++ G YV+LSNI+A E+W +R + G+
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660
Query: 301 RKIPAYS 307
RK P +S
Sbjct: 661 RKTPGWS 667
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 10/186 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAI-CVFK--NMMGNVN 57
+I+ YV +GD+ + F+ + K+++ SW SII+ +VR G + EA+ CV + +M G +
Sbjct: 60 LINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGH 119
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L RP+ T+ +L +C LV+ GK+VH + + VF+ +L+ LY + G L
Sbjct: 120 L-RPDFYTFPPILKACVSLVD------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +VF M +KDV +WNAMIS N AL + + MK +G++ + IT ++L C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232
Query: 178 ARAQLV 183
A++ V
Sbjct: 233 AQSDDV 238
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 134/252 (53%), Gaps = 11/252 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G + A ++F+ M RD+VSW SII + +N A+ FK M + +R
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM--QLGGIR 320
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLER 119
P+ T VS+ S + L ++ + + + G+++R E + V +G AL+++Y K+G +
Sbjct: 321 PDLLTVVSLTSIFSQLSDQR---ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A VF + KD +WN +++ N EA+ ++ M+E + N+ T+V+++ A +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV- 237
++ G+++ H+ L K + + C++DL G+ G L +A +P D SV
Sbjct: 438 HVGALQQGMKI-HAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP--RDTSVP 494
Query: 238 LGALLGACKIHG 249
A++ + IHG
Sbjct: 495 WNAIIASLGIHG 506
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G +D A +F +M +DV SW ++I+GF +NG A+ V M G V+ +
Sbjct: 166 YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG--VKMDTI 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+L CA + G +H ++L++ + VF+ ALI++Y K G L+ A VF
Sbjct: 224 TVASILPVCA---QSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
M ++D+ +WN++I++ N+ AL F M+ G+R + +T V++ +
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+A + ++ +SC VN K++H +L ++ + T LI+LY G + +
Sbjct: 22 DADFNALFNSCVN-VNAT-----KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRS 75
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEAL----VMFDEMKEKGLRANEITFVAVLTACA 178
F + K++ +WN++IS+ + EA+ +F LR + TF +L AC
Sbjct: 76 TFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC- 134
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G ++ H + K + +V L R G+L A + MP + S
Sbjct: 135 -VSLVD-GKKV-HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWN 191
Query: 239 GALLGACK 246
+ G C+
Sbjct: 192 AMISGFCQ 199
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYVK G++ SA +F M +R+V+SWT++I G+ + EAI +F+ M + V
Sbjct: 194 MVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM--QLEEVE 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E ++VLS+CA L G L LG+ +H YI ++ + V + ALID+Y K G + RA
Sbjct: 252 PDEIAMLAVLSACADL---GALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF++M K V TW+ +I++LA + EA+ MF M++ +R NE+TFVA+L+AC+
Sbjct: 309 LEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHV 368
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V++G F M +++ P +EHYGC++DLL RAG L EA++ + MPFE +A + G+
Sbjct: 369 GMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGS 428
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A H +L + L +L+P + G YV+LSN +A L +WN + +RK M AG+
Sbjct: 429 LLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGV 488
Query: 301 RKIPAYSLIE 310
+K P S+IE
Sbjct: 489 KKAPGGSVIE 498
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 42/288 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
ID G A +F N D+ + + I + AI ++ + ++ +R
Sbjct: 62 FIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRI--RIDGLR 119
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
P+ + SVL + L + +G+Q+H + + + + V + T+LI +Y
Sbjct: 120 PDSYSIPSVLKAVVKL---SAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDA 176
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
KVG L+ A +VF M ++V +W +I+ A +R
Sbjct: 177 RKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPH 236
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EA+ +F +M+ + + +EI +AVL+ACA +ELG E H+ + K + I+ Y +
Sbjct: 237 EAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG-EWIHNYIEKHGLCRIVSLYNAL 295
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDL 253
+D+ ++G + A E +M + ++ A +HG A+D+
Sbjct: 296 IDMYAKSGNIRRALEVFENMK-QKSVITWSTVIAALALHGLGGEAIDM 342
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ S+LS+C ++ LY Q+HG++L + + ID +G A +F
Sbjct: 27 FTSLLSNCRHHLH---LY---QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFS 80
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
+ D+ +N I +L+ S A+ ++ ++ GLR + + +VL A + VE+
Sbjct: 81 NKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEV 140
Query: 186 GLEL 189
G ++
Sbjct: 141 GRQI 144
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+++ G +D A LF+ M +RD VSWT++I+G+V+ G F EA+ +F+ M + VR
Sbjct: 195 VISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREM--QFSKVR 252
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++CA L G L G+ Y+ R+ I + F+G AL+D+Y K G +++A
Sbjct: 253 ADEFTMVSVVTACAQL---GALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQA 309
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M I+D TW A+I LA N +EA+ MF M +E+TF+ VLTAC A
Sbjct: 310 LGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHA 369
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F SM G + + P + H+GC++DLLGRAG L EA E + +MP P++++ G
Sbjct: 370 GLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGT 429
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG ++ LLEL ++ Y++LSN++A RW LR+ ++E GI
Sbjct: 430 LLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGI 489
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 490 KKEPGCSLIE 499
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 39/216 (18%)
Query: 5 YVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
Y GD A L + R V W ++I+G R+ F + C F +M+ V P
Sbjct: 64 YAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTG--VVP 121
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------- 112
TY++VLS+C + ++LG QVH ++ + ++ + +G ALID+Y
Sbjct: 122 TPVTYITVLSACG---KDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAW 178
Query: 113 ----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
++G +++A +F M +D +W AMI + +E
Sbjct: 179 ELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
AL MF EM+ +RA+E T V+V+TACA+ +E G
Sbjct: 239 ALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG 274
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 196/309 (63%), Gaps = 4/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G M+ A +F+ + ++D +SW +++ G+ +NG EAI + NMM
Sbjct: 365 LVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY-NMMEECRDTI 423
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS++ + + + G L G ++H +++N + L VF+ T LIDLYGK G LE A
Sbjct: 424 PNQGTWVSIIPAYSHV---GALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + WNA+I+SL + R +EAL +F +M + ++A+ ITFV++L+AC+ +
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M ++ + P ++HYGC+VDLLGRAG L +A E +R+MP +PDAS+ GA
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKI+G +L RLLE+ ++ G YV+LSNI+A E+W +R + G+
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660
Query: 301 RKIPAYSLI 309
RK P +S +
Sbjct: 661 RKTPGWSSV 669
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 10/186 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAI-CVFK--NMMGNVN 57
+I+ YV +GD+ + F+ + K+++ SW SII+ +VR G + EA+ CV + +M G +
Sbjct: 60 LINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGH 119
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L RP+ T+ +L +C LV+ GK+VH + + VF+ +L+ LY + G L
Sbjct: 120 L-RPDFYTFPPILKACVSLVD------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +VF M +KDV +WNAMIS N AL + + MK +G++ + IT ++L C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232
Query: 178 ARAQLV 183
A++ V
Sbjct: 233 AQSDDV 238
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 134/252 (53%), Gaps = 11/252 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G + A ++F+ M RD+VSW SII + +N A+ FK M + +R
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM--QLGGIR 320
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLER 119
P+ T VS+ S + L ++ + + + G+++R E + V +G AL+++Y K+G +
Sbjct: 321 PDLLTVVSLTSIFSQLSDQ---RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A VF + KD +WN +++ N EA+ ++ M+E + N+ T+V+++ A +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV- 237
++ G+++ H+ L K + + C++DL G+ G L +A +P D SV
Sbjct: 438 HVGALQQGMKI-HAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP--RDTSVP 494
Query: 238 LGALLGACKIHG 249
A++ + IHG
Sbjct: 495 WNAIIASLGIHG 506
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G +D A +F +M +DV SW ++I+GF +NG A+ V M G V+ +
Sbjct: 166 YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG--VKMDTI 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+L CA + G +H ++L++ + VF+ ALI++Y K G L+ A VF
Sbjct: 224 TVASILPVCA---QSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
M ++D+ +WN++I++ N+ AL F M+ G+R + +T V++ +
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+A + ++ +SC VN K++H +L ++ + T LI+LY G + +
Sbjct: 22 DADFNALFNSCVN-VNAT-----KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRS 75
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEAL----VMFDEMKEKGLRANEITFVAVLTACA 178
F + K++ +WN++IS+ + EA+ +F LR + TF +L AC
Sbjct: 76 TFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC- 134
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G ++ H + K + +V L R G+L A + MP + S
Sbjct: 135 -VSLVD-GKKV-HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWN 191
Query: 239 GALLGACK 246
+ G C+
Sbjct: 192 AMISGFCQ 199
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ GD+ +A LF+ +RD++SW+S+I + + EA+ +F M + V
Sbjct: 208 MIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEM--QLANVL 265
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T VSVLS+C + G L +GK +H I RN I + + +GT+L+D+Y K G ++ +
Sbjct: 266 PDKVTMVSVLSACGDV---GALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNS 322
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF M +DV W+AMI LA++ + AL F +M + ++ N++TF+ VL+AC+
Sbjct: 323 LRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHI 382
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM ++V P +EHYGCVVD+LGRAG L EA E ++SMPF PDA V A
Sbjct: 383 GLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRA 442
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ V++ E LLEL+P G YV+LSNI++ + W++ ++R+ M I
Sbjct: 443 LLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINI 502
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 503 QKVPGSSSIE 512
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 41/217 (18%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
D+ A +F+ + D W ++I ++ + E++ +F M + P ++ +S
Sbjct: 52 NDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECI--PIDSYSLS 109
Query: 69 -VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA------- 120
V+ +C L + G G+++H +L+ + +F+ TALI++Y K G +E A
Sbjct: 110 LVIQACGRLKDPGN---GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM 166
Query: 121 ---------------IRV---------FKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
+RV F M +D+ +WN MI AS A +FD
Sbjct: 167 AHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFD 226
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
E+ L I++ +++ A A+A+ L LFH M
Sbjct: 227 RTCERDL----ISWSSMIAAYAKARQSNEALRLFHEM 259
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 187/304 (61%), Gaps = 5/304 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G M AI +F M +++ VSW S+I+GFV+NG F +A F M N R
Sbjct: 397 MIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTN--R 454
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +TY S L +CA L L++G+Q+H ++R+ + +F ALI Y K G + A
Sbjct: 455 ADWSTYASCLRACANLA---ALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEA 511
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F MV KD+ +WNA++ ASN + EA+ +F EM+ G+R +E+TFV +L+AC+RA
Sbjct: 512 KQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRA 571
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F+SM ++ + P+ EHY C+ DLLGRAG L+EA E ++ M +P+A V GA
Sbjct: 572 GLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGA 631
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+++ +L +L EL+P YV+LSNI A +W+ A R ++ E G
Sbjct: 632 LLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGA 691
Query: 301 RKIP 304
K P
Sbjct: 692 NKPP 695
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 122/309 (39%), Gaps = 81/309 (26%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------- 53
M++G+V+ GD+D+A F + +VVSW +++NG+ R G +A +F M
Sbjct: 211 MLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVAC 270
Query: 54 -----GNVNLVRPNEA----------TYVSVLSSCAGLVNEGGLYLGKQV---------- 88
G V L R EA +S + +GL G L K +
Sbjct: 271 NVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVA 330
Query: 89 ------HGYILRNEI--VLSVFMG---------TALIDLYGKVGCLERAIRVFKSMVIKD 131
HGY+ RN + +F G +I Y + G LE A+ +F+ M KD
Sbjct: 331 AKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKD 390
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGL---------------------------- 163
+WN MI+ A + ++A+ +F M K
Sbjct: 391 TVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRR 450
Query: 164 ---RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
RA+ T+ + L ACA + +G +L HS+L + + + ++ + G +
Sbjct: 451 GTNRADWSTYASCLRACANLAALHVGRQL-HSLLVRSGHINDLFARNALISTYAKCGRML 509
Query: 221 EAKEFMRSM 229
EAK+ M
Sbjct: 510 EAKQIFDEM 518
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY KNG D A+ L M D+ SW S + G ++G A+ F M+
Sbjct: 149 MISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMV------- 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS G V G L G I +V V L++ Y + G + A
Sbjct: 202 --EKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWV----TLLNGYCRAGRISDA 255
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V N M+ SR +EA +FDEM K N I++ +++ ARA
Sbjct: 256 RDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGK----NSISWTTIISGLARA 311
Query: 181 QLVELGLELFHSM 193
++ +L M
Sbjct: 312 GKLQEAKDLLDKM 324
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 23/231 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ ++G +D A LF+ M R+ VSW ++I +G +A +F M
Sbjct: 55 MLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRM-------- 106
Query: 61 PNEATYV-SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+ + +V+ SC G L L + V + ++ A+I Y K G +
Sbjct: 107 PSRDDFSWTVMVSC--YARAGELELARDVLDRMPGDKCTACY---NAMISGYAKNGRFDD 161
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+++ + M D+ +WN+ ++ L + + A+ FDEM EK + +++ +L R
Sbjct: 162 AVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDM----VSWNLMLEGFVR 217
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
A L+ S G+ E P + + +++ RAG +S+A++ MP
Sbjct: 218 AG----DLDAAASFFGRIE-SPNVVSWVTLLNGYCRAGRISDARDLFDRMP 263
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
VF + + G L A R+F SM ++ T+N+M+S+LA + R EA +FD M
Sbjct: 18 VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
+ N +++ A++ A + V LF M + + + +V RAG L
Sbjct: 78 R----NAVSWNAMIAALSDHGRVADARGLFDRMPSRDDF-----SWTVMVSCYARAGELE 128
Query: 221 EAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
A++ + MP + + A++ +G D
Sbjct: 129 LARDVLDRMPGDKCTACYNAMISGYAKNGRFD 160
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G+++ A L+F M ++D+VSW+++I G+ NG +A+ +F M NL +
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSE-NL-K 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V VLS+CA L G L LG + RNE + + +GTALID+Y K G + +A
Sbjct: 314 PDCYTMVGVLSACATL---GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQA 370
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +M KD WNAM+ L+ N K +F +++ G+R +E TF+ +L C
Sbjct: 371 WEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G + F++M F + P +EHYGC+VDLLGRAGLL+EA + + +MP +P+A V GA
Sbjct: 431 GFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGA 490
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG CK+H L +V ++L+EL+P + G YV LSNI++G RW A +R M E I
Sbjct: 491 LLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQI 550
Query: 301 RKIPAYSLIE 310
+KI A S IE
Sbjct: 551 QKIRACSWIE 560
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 145/249 (58%), Gaps = 15/249 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPN 62
YVK + D A+ +F+++ ++VVSWT+II G++ +G F EAI FK + MG ++P+
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG----LKPD 214
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ V VL++CA L G G+ + YI + + +VF+ T+L+D+Y K G LERA
Sbjct: 215 SFSLVKVLAACARL---GDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F +M KD+ +W+ MI A N ++AL +F +M+ + L+ + T V VL+ACA
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331
Query: 183 VELGLELFHSMLGKFEVV--PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG+ S++ + E + P++ ++D+ + G +++A E +M + D V A
Sbjct: 332 LDLGI-WASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNA 387
Query: 241 LLGACKIHG 249
++ ++G
Sbjct: 388 MMVGLSMNG 396
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + + L+F + + ++ W ++I G V CF +AI ++ +M G L PN T
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL--PNNFTIPF 119
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +CA ++ + LG ++H +++ VF+ T+L+ LY K + A++VF +
Sbjct: 120 VLKACARKLD---VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIP 176
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
K+V +W A+I+ S+ +EA+ F ++ E GL+ + + V VL ACAR
Sbjct: 177 DKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K +H +LR + ++ ++ G + VF + ++ WN MI L S
Sbjct: 33 KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+A+ ++ M+ G N T VL ACAR V LGL++ HS+L K
Sbjct: 93 DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI-HSLLVK 142
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G MD+AI +FE M ++++VSW S+I+G +NG + +A+ F +MG+ +
Sbjct: 394 MVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFM-LMGHEG-QK 451
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+++T+ LSSCA L L +GKQ+H ++++ +F+ ALI +Y K G + A
Sbjct: 452 PDQSTFACGLSSCAHL---AALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSA 508
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK + DV +WN++I++ A N +EAL +F +M+ +G+ +E+TFV +L+AC+
Sbjct: 509 ELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 568
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL+LF M+ + + P+ EHY C+VDLLGRAG L EA + +R M +A + GA
Sbjct: 569 GLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGA 628
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L +LLE +P YV+LSN+ A RW+ +R+ M E G
Sbjct: 629 LLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGA 688
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 689 EKQPGWSWIE 698
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 44/289 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
MI YV+N +D AI LF M +++ +SWT++ING+VR G EA + M
Sbjct: 270 MIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ 329
Query: 53 ----MGNVNLVRPNEA----------------TYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
G V R ++A T ++ S C G ++E L+L KQ +
Sbjct: 330 TAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQC-GRMDEA-LHLFKQ----M 383
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
++ +IV ++ Y +VG ++ AI++F+ M K++ +WN++IS L N +AL
Sbjct: 384 VKKDIV----SWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDAL 439
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
F M +G + ++ TF L++CA +++G +L H ++ K + ++ +
Sbjct: 440 KSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQL-HQLVMKSGYATDLFVSNALITM 498
Query: 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
+ G +S A+ + + D +L+ A ++G A+ L H++
Sbjct: 499 YAKCGSISSAELLFKDID-HFDVVSWNSLIAAYALNGNGREALKLFHKM 546
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY KN D A LF+ M +D+VSW S++ G+ RNG + F+ M
Sbjct: 146 MVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA------- 198
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS G V G L + I V V M + + G + A
Sbjct: 199 --ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG----FARFGKIAEA 252
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M I++V WNAMI++ N EA+ +F EM EK N I++ V+ R
Sbjct: 253 RRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRM 308
Query: 181 QLVELGLELFHSM 193
++ +L + M
Sbjct: 309 GKLDEARQLLNQM 321
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 30/262 (11%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K+G +D AI +F++M ++ V+ S+I+ F +NG +A +F M +
Sbjct: 27 KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM---------PQRNI 77
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VS S A ++ + +Q+ + ++ + T +I Y + G L +A +F
Sbjct: 78 VSWNSMIAAYLHNDRVEEARQLFDKMPTRDL----YSWTLMITCYTRNGELAKARNLFNL 133
Query: 127 MVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ K VC NAM++ A N + EA +FD M K L +++ ++LT R +
Sbjct: 134 LPYKWNPVCC-NAMVAGYAKNRQFDEARRLFDAMPAKDL----VSWNSMLTGYTRNGEMR 188
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LGL+ F M + +VV + +VD G L+ + EF +P S + L G
Sbjct: 189 LGLQFFEEMAER-DVVS----WNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGF 243
Query: 245 CKIHGAVDLCHEVGRRLLELQP 266
+ + RRL + P
Sbjct: 244 ARFGKIAE-----ARRLFDQMP 260
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 30/266 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + KNG + A LF+ M +R++VSW S+I ++ N EA +F M
Sbjct: 52 MISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM-------- 103
Query: 61 PNEATYV-SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P Y +++ +C G L + + + + A++ Y K +
Sbjct: 104 PTRDLYSWTLMITC--YTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDE 158
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A R+F +M KD+ +WN+M++ N + L F+EM E+ + +++ ++
Sbjct: 159 ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV----VSWNLMVDG--- 211
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFE---PD 234
VE+G +S FE +P V L G R G ++EA+ MP
Sbjct: 212 --FVEVG--DLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW 267
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRR 260
+++ A + C + A+ L E+ +
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMPEK 293
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
VF I GK G ++ AI+VF+ M K+ T N+MIS+ A N R +A +FD M +
Sbjct: 15 VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGL 218
+ N +++ +++ A VE +LF M P + Y ++ R G
Sbjct: 75 R----NIVSWNSMIAAYLHNDRVEEARQLFDKM-------PTRDLYSWTLMITCYTRNGE 123
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
L++A+ +P++ + A++ + D RRL + P
Sbjct: 124 LAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFD----EARRLFDAMP 167
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-NVNLV 59
M+ GY ++G +D A LF+ M +DVV W ++I G+V EA+ +F M N+N
Sbjct: 280 MVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNIN-- 337
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+E T VS LS+C+ L G L +G +H YI ++E+ L+V +GTALID+Y K G + +
Sbjct: 338 -PDEVTMVSCLSACSQL---GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITK 393
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+VF+ + ++ TW A+IS LA + A+ F EM + + +E+TF+ +L+AC
Sbjct: 394 AIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 453
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G + F M KF + P ++HY C+VDLLGRAGLL EA+E ++SMP E DA V G
Sbjct: 454 GGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWG 513
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL AC+IHG V + +LL++ P G YV+L+N++ E W A RK M + G
Sbjct: 514 ALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRG 573
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 574 VEKTPGCSSIE 584
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 143/275 (52%), Gaps = 38/275 (13%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V GD+D A +F+ RD+VSW S+ING+VR G EA+ ++ M V ++P+E T
Sbjct: 153 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREM--KVEGIKPDEVT 210
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ V+SSCA L + L LG++ H YI N + L+V + AL+D+Y K G LE A ++F
Sbjct: 211 MIGVVSSCAQLED---LDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFD 267
Query: 126 SMV-------------------------------IKDVCTWNAMISSLASNSREKEALVM 154
SM KDV WNAMI +R KEAL +
Sbjct: 268 SMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALAL 327
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
F+EM+ + +E+T V+ L+AC++ +++G+ + H + K E+ + ++D+
Sbjct: 328 FNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWI-HHYIEKHELSLNVALGTALIDMYA 386
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G +++A + + +P ++ A++ +HG
Sbjct: 387 KCGKITKAIQVFQELPGR-NSLTWTAIISGLALHG 420
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 112/220 (50%), Gaps = 5/220 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D + N + SW I GF+ + EA+ ++K ++ + +P+ TY +
Sbjct: 55 DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVL-QCDGTKPDNYTYPLL 113
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+CA L + +G ++ G++L +F+ A+I L G L+ A ++F +
Sbjct: 114 FKACARL---SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCV 170
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN+MI+ EAL + EMK +G++ +E+T + V+++CA+ + ++LG E
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE- 229
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
H + + + + ++D+ + G L A++ SM
Sbjct: 230 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSM 269
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY NG++D A +F M RD SW+S+++ + + +A+ +++ M V
Sbjct: 143 MIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREM--RAACVN 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+C+ + G L +G +VH ++ N + L V +GTALID+Y K G +E +
Sbjct: 201 PDCTTMVSVLSACSDM---GALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENS 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF SM +KDV TW++MI LA++ +AL +F M +GL+ NE+TF+ VL +C
Sbjct: 258 VRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHL 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F SM V P ++HYGC+VDLLGR+G + EAK+ +R MPFEPDA + A
Sbjct: 318 GLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRA 377
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+I+ V++ E +L L P G YV+LSNI+A W ++R+ + I
Sbjct: 378 LLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERI 437
Query: 301 RKIPAYSLIE 310
++IP S IE
Sbjct: 438 QRIPGRSSIE 447
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
+F+ TAL++ Y K G + A F +DV N M+++ + EA +FD M+E
Sbjct: 75 LFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRE 134
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGL 218
+ + +++ ++ A V+L E+F+ M + F +M Y GR
Sbjct: 135 RDM----VSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAY-----TKGRRS- 184
Query: 219 LSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDLCHEV 257
+A E R M PD + + ++L AC GA+ + EV
Sbjct: 185 -KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K G + A LFE M ++++V+W ++I G++ N + + +F+ M+G ++
Sbjct: 137 MITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFG--IQ 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T S L C+ L L LG+QVH + ++ + GT+LI +Y K G LE
Sbjct: 195 PNSSTLSSALLGCSEL---SALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDG 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +DV TWNAMIS A + K+AL +FDEM EKG++ + ITFVAVL AC A
Sbjct: 252 WKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHA 311
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LG++ FHSM + +V +HY C+VDLLGRAG L EA + + MPF+P A+V G
Sbjct: 312 GFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGT 371
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++ ++LL L P YV L+N++A +RW+ +RK+M +
Sbjct: 372 LLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKV 431
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 432 VKTPGYSWIE 441
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ YV+N +M+ A FE+M +D SW ++I GF +N +A +F L+
Sbjct: 44 MLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLF--------LIM 95
Query: 61 P--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P N T+ +++S G V G L + + SV TA+I Y K+G +
Sbjct: 96 PTKNVVTWNAMIS---GYVECGDLDSALK----LFEKAPFKSVVAWTAMITGYMKLGRIG 148
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F+ M K++ TWNAMI+ N R ++ + +F M G++ N T + L C+
Sbjct: 149 LAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG ++ H ++ K + ++ + + G+L + + +P D
Sbjct: 209 ELSALQLGRQV-HQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVP-RRDVVTW 266
Query: 239 GALLGACKIHG 249
A++ HG
Sbjct: 267 NAMISGYAQHG 277
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G+ G++D A F+ M ++D VSWT++I+G++R+ F EA+ +F+NM V+
Sbjct: 291 IVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN--VK 348
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L LG+ + YI RN+I +F+ ALID+Y K G +++A
Sbjct: 349 PDEFTMVSVLTACAHL---GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 405
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ M +D TW AMI LA N ++AL MF M + + +EIT++ VL+AC
Sbjct: 406 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 465
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M + + P + HYGC+VDLL RAG L EA E + +MP + ++ V GA
Sbjct: 466 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 525
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+++ D+ V +++LEL+P + YV+L NI+A +RWN +LR+ M++ GI
Sbjct: 526 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI 585
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 586 KKTPGCSLIE 595
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 37/260 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y+ G +D+A +F+ K DV++W II+ + + G F E+ +F ++ V
Sbjct: 159 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLF--LVMEDKQVL 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T V VLS+C+ L + L GK+VH Y+ ++ ++ + A+ID+Y G ++ A
Sbjct: 217 PTTVTLVLVLSACSKLKD---LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSA 273
Query: 121 IRVFKSM----VI---------------------------KDVCTWNAMISSLASNSREK 149
+ +F+SM +I KD +W AMI ++R K
Sbjct: 274 LGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 333
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F M+ ++ +E T V+VLTACA +ELG E + + + ++ + +
Sbjct: 334 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNAL 392
Query: 210 VDLLGRAGLLSEAKEFMRSM 229
+D+ + G + +A+ R M
Sbjct: 393 IDMYFKCGDVDKAESIFREM 412
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 6/221 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD A LF+ + + ++ W ++I G+ R + ++ M+ V+P+ T+
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG--VKPDRYTFPF 123
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+ G + L G+Q+HG++L++ + +VF+ TAL+ +Y G L+ A VF
Sbjct: 124 LFK---GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 180
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
DV TWN +IS+ + +E+ +F M++K + +T V VL+AC++ + + G +
Sbjct: 181 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 240
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ HS + +V + ++D+ G + A RSM
Sbjct: 241 V-HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 185/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G+++ A LFENM R+VVSW ++I G+ +N + +AI +F+ M L
Sbjct: 230 MISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLA- 288
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G L LGK +H +I RN+I + +F+G AL D+Y K GC+ A
Sbjct: 289 PNDVTLVSVLSACAHL---GALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 345
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV +W+ +I LA EA F EM E GL N+I+F+ +LTAC A
Sbjct: 346 KGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHA 405
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE F M + + P +EHYGCVVDLL RAG L +A+ + SMP +P+ V GA
Sbjct: 406 GLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGA 465
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+I+ + V R+LEL H G V L+N++A + R + A R M +
Sbjct: 466 LLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKS 525
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 526 MKTPGCSWIE 535
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 133/257 (51%), Gaps = 17/257 (6%)
Query: 8 NGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+G++ ++L+F + L ++ ++ +++ F ++ + I F N + N P+E T+
Sbjct: 71 HGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTF 130
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
SVL +CAGL + G++VH ++ + ++F+ +L+DLY KVGC A ++F
Sbjct: 131 TSVLKACAGLAQ---VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE 187
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
MV++DV +WN +IS + +A ++FD M EK L +++ +++ AR +E
Sbjct: 188 MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEA 243
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE----PDASVLGALL 242
+LF +M + V + ++ + ++A E R M E P+ L ++L
Sbjct: 244 RQLFENMPMRNVV-----SWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVL 298
Query: 243 GACKIHGAVDLCHEVGR 259
AC GA+DL + R
Sbjct: 299 SACAHLGALDLGKWIHR 315
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G+++ A L+F M ++D+VSW+++I G+ NG +A+ +F M NL +
Sbjct: 256 LLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSE-NL-K 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V VLS+CA L G L LG + RNE + + +GTALID+Y K G + +A
Sbjct: 314 PDCYTMVGVLSACATL---GALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQA 370
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +M KD WNAM+ L+ N K +F +++ G+R +E TF+ +L C
Sbjct: 371 WEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHG 430
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G + F++M F + P +EHYGC+VDLLGRAGLL+EA + + +MP +P+A V GA
Sbjct: 431 GFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGA 490
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG CK+H L +V ++L+EL+P + G YV LSNI++G RW A +R M E I
Sbjct: 491 LLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQI 550
Query: 301 RKIPAYSLIE 310
+KI A S IE
Sbjct: 551 QKIRACSWIE 560
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 144/249 (57%), Gaps = 15/249 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPN 62
YVK + D A+ +F+++ ++VVSWT+II G++ +G F EAI FK + MG ++P+
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG----LKPD 214
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ V VL++CA L G G+ + YI + + +VF+ T+L+D+Y K G LERA
Sbjct: 215 SFSLVKVLAACARL---GDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F +M KD+ +W+ MI A N ++AL +F +M+ + L+ + T V VL+ACA
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331
Query: 183 VELGLELFHSMLGKFEVV--PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG+ S++ + E + P++ ++D+ + G +++A E +M D V A
Sbjct: 332 LDLGI-WASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNA 387
Query: 241 LLGACKIHG 249
++ ++G
Sbjct: 388 MMVGLSMNG 396
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + + L+F + + ++ W ++I G V CF +AI ++ +M G L PN T
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL--PNNFTIPF 119
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +CA ++ + LG ++H +++ VF+ T+L+ LY K + A++VF +
Sbjct: 120 VLKACARKLD---VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIP 176
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
K+V +W A+I+ S+ +EA+ F ++ E GL+ + + V VL ACAR
Sbjct: 177 DKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACAR 227
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K +H +LR + ++ ++ G + VF + ++ WN MI L S
Sbjct: 33 KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+A+ ++ M+ G N T VL ACAR V LGL++ HS+L K
Sbjct: 93 DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI-HSLLVK 142
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG+V+NG + AI +F+ M +R V+SWT +INGFV+ G F EA+ F+ M V+ V
Sbjct: 85 MIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKM--QVSKVE 142
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+VLS+CA L G L LG VH Y L+ + +V + +LIDLY + G +E A
Sbjct: 143 PDRVTIVTVLSACANL---GALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELA 199
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M + + +WN++I LA+N +EAL FD M+++G + N+++F LTAC+
Sbjct: 200 RQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHT 259
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+ F M ++ P +EHYGC+VDL RAG L +A +++MP +P+ V+G+
Sbjct: 260 GLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGS 319
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ G V+L + L+ L P YV+LSNI+A + RW+ A R M GI
Sbjct: 320 LLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGI 379
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 380 QKKPGFSSIE 389
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCL 117
+ PN T++++LS CA L ++G LG +H Y + + ++ +GTAL+D+Y K G +
Sbjct: 6 IDPNHVTFITLLSGCADLPSQGN-SLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHV 64
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E + F + +K+ +WN MI N + +EA+ +FDEM E+G+ I++ ++
Sbjct: 65 ELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGV----ISWTVLINGF 120
Query: 178 ARAQLVELGLELFHSM 193
+ L E LE F M
Sbjct: 121 VKMGLFEEALEWFRKM 136
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V+ G M A LF+ M R +VSWT+II+G+ R G + +A+ VF+ M + +
Sbjct: 167 IISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREM--QIAGIE 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EA+ +SVL +CA L G L GK +H + RN ++ + ALI++Y K GC+++A
Sbjct: 225 PDEASIISVLPACAKL---GALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +DV +W+ MI LA++ + +EA+ +F+ MK+ ++ N ITFV +L+ACA A
Sbjct: 282 CQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
E GL F +M F + P +EHYG +VDLLGRAG LS+A + + MP +PD+ + G+
Sbjct: 342 GFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGS 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ H +++ L EL+P G YV+LSNI+A L +W+ + +RK + +
Sbjct: 402 LLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRM 461
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 462 KKTPGCSLIE 471
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------- 53
MID +N DMD A LF+ ++ + + ++I N + I +K M+
Sbjct: 26 MIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQ 85
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLY-LGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+ +L+ P+E T+ V+ +CA L GL+ LGKQVH + + ALID+Y
Sbjct: 86 TSEDLILPDEFTFPFVVKACARL----GLHNLGKQVHAQFFKFGKKSHLITENALIDMYT 141
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K L A +F M + +WN +IS + + A +FDEM + + +++ A
Sbjct: 142 KCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTI----VSWTA 197
Query: 173 VLTACARAQLVELGLELFHSM 193
+++ R L++F M
Sbjct: 198 IISGYTRIGSYIDALDVFREM 218
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K+ H +++ + S F+ T +ID+ + ++ A +FK ++ + +NAMI + N
Sbjct: 5 KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64
Query: 146 SREKEALVMFDEM---------KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
S + + +M E + +E TF V+ ACAR L LG ++ H+ K
Sbjct: 65 SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQV-HAQFFK 123
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
F + ++D+ + L +A M
Sbjct: 124 FGKKSHLITENALIDMYTKCDNLLDAHNLFDEM 156
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +DSA +FE +L +DV+SW ++I G+ +NG EAI V+K MM +
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYK-MMEECKEII 517
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L + A + G L G ++HG +++ + L VF+ T LID+YGK G L A
Sbjct: 518 PNQGTWVSILPAYAHV---GALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + TWNA+IS + ++ L +F EM ++G++ + +TFV++L+AC+ +
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G F ++ ++ + P ++HYGC+VDLLGRAG L A F++ MP +PDAS+ GA
Sbjct: 635 GFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGA 693
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L RL E+ K+ G YV+LSNI+A + +W +R E G+
Sbjct: 694 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 753
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 754 KKTPGWSTIE 763
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ + F+ + ++DV +W S+I+ +V NG F EAI F ++ V+ +R
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLL-LVSEIR 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C LV+ G+++H + + +VF+ +LI +Y + G A
Sbjct: 216 PDFYTFPPVLKACGTLVD------GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIA 269
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F M +D+ +WNAMIS L N +AL + DEM+ +G++ N +T V++L C +
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 12/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G+++ A F+ M DVVSW SII + +N A F M +N +
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM--QLNGFQ 414
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T VS+ S A + VHG+I+R ++ V +G A++D+Y K+G L+
Sbjct: 415 PDLLTLVSLASIVA---QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDS 471
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A +VF+ +++KDV +WN +I+ A N EA+ ++ M+E K + N+ T+V++L A A
Sbjct: 472 AHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYA 531
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G+ + H + K + + C++D+ G+ G L +A +P E +
Sbjct: 532 HVGALQQGMRI-HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-W 589
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
A++ IHG + ++ +L+ ++P H +LS H+G
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G A LF++M RD+ SW ++I+G ++NG +A+ V M + ++
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM--RLEGIK 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T VS+L C L G + +H Y++++ + +F+ ALI++Y K G LE A
Sbjct: 314 MNFVTVVSILPVCPQL---GDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ M I DV +WN++I++ N A F +M+ G + + +T V++ + A++
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ + + ++ + ++ + VVD+ + GLL A +
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
K +H ++ V S+F+ T L++LY +G + + F + KDV TWN+MIS+
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193
Query: 144 SNSREKEALVMFDE-MKEKGLRANEITFVAVLTACA 178
N EA+ F + + +R + TF VL AC
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG 229
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
ID Y K GD+ SA +F++ +D++ W+++I+ + +N C EA +F +M G +RP
Sbjct: 370 IDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG--IRP 427
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
NE T VS+L CA G L +GK +H YI + I + + T+ +D+Y G ++ A
Sbjct: 428 NERTMVSLLMICA---KAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAH 484
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
R+F +D+ WNAMIS A + + AL +F+EM+ G+ N+ITF+ L AC+ +
Sbjct: 485 RLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSG 544
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G LFH M+ +F P +EHYGC+VDLLGRAGLL EA E ++SMP P+ +V G+
Sbjct: 545 LLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSF 604
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
L ACK+H + L ++ L L+P G V++SNI+A RW +R+AM + GI
Sbjct: 605 LAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIV 664
Query: 302 KIPAYSLIE 310
K P S IE
Sbjct: 665 KEPGVSSIE 673
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK ++ A +F+ + K ++SWT++I ++ E + +F M+G +
Sbjct: 268 LIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG--MF 325
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +S++ C G L LGK +H + LRN LS+ + TA ID+YGK G + A
Sbjct: 326 PNEITMLSLVKECG---TAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S KD+ W+AMISS A N+ EA +F M G+R NE T V++L CA+A
Sbjct: 383 RSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKA 442
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E+G + HS + K + M VD+ G + A + D S+ A
Sbjct: 443 GSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEAT-DRDISMWNA 500
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 501 MISGFAMHG 509
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 8/226 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G + A LLF+ + +DVVSW+++I + R+G EA+ + ++M +V V+P+E
Sbjct: 169 YSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDM--HVMRVKPSEI 226
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV--LSVFMGTALIDLYGKVGCLERAIR 122
+S+ A L + L LGK +H Y++RN V + TALID+Y K L A R
Sbjct: 227 GMISITHVLAELAD---LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
VF + + +W AMI++ + E + +F +M +G+ NEIT ++++ C A
Sbjct: 284 VFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGA 343
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
+ELG +L H+ + + +D+ G+ G + A+ S
Sbjct: 344 LELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDS 388
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNV----NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
+I +++N C +A ++ M G N V P SVL +C + + LG++
Sbjct: 95 LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIP------SVLKACCLIPS---FLLGQE 145
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VHG++++N VF+ ALI +Y +VG L A +F + KDV +W+ MI S +
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
EAL + +M ++ +EI +++ A ++LG
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLG 244
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 196/316 (62%), Gaps = 13/316 (4%)
Query: 3 DGYVKNG---------DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D YV+NG +D A+ +FE M +RD+VSW+S+I F +NG EA+ +F+ M
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
V V+P+E +SV+S+ + L G L LGK + G+I RN + +V +GTAL+D++ +
Sbjct: 178 -LVGTVKPDEVIVLSVVSAISIL---GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSR 233
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
GC+E ++RVF M ++V TW A+I+ LA + R EAL MF EM+ G + + +TF V
Sbjct: 234 CGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L AC+ LV G +F S+ ++ + P+ EHYGC+VDLLGRAGLL+EA +F+ MP P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
++ + LLGAC H ++L +V ++ EL H G YV+LSN++ G+ RW +R
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRN 413
Query: 294 AMVEAGIRKIPAYSLI 309
+M E I K P SLI
Sbjct: 414 SMREKRISKKPGCSLI 429
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 21/256 (8%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ T+ VL +CA L G +H + + V++ LI YG G L+
Sbjct: 83 VSPDHFTFPFVLKACARLQT------GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLD 136
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTAC 177
A++VF+ M +D+ +W++MI+ A N EAL +F M+ G ++ +E+ ++V++A
Sbjct: 137 FALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAI 196
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ +ELG + + + + + +VD+ R G + E+ M E +
Sbjct: 197 SILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLT 254
Query: 238 LGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRY-VVLSNIHAGL--ERWNRATD 290
AL+ +HG A+ + +E+ R QP H V+++ H GL E W+
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEM--RNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFES 312
Query: 291 LRKAMVEAGIRKIPAY 306
+R E G+ +P +
Sbjct: 313 IRN---EYGMEPLPEH 325
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D + + G ++ ++ +F+ M +R+V++WT++ING +G EA+ +F M + +
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHG--FQ 284
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGT--ALIDLYGKVGC 116
P+ T+ VL +C+ GLV+EG +RNE + ++DL G+ G
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEGWHVFES------IRNEYGMEPLPEHYGCMVDLLGRAGL 338
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNS 146
L A + M I+ + W ++ + +++
Sbjct: 339 LNEACKFVDGMPIRPNSIIWRTLLGACVNHN 369
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DGY+K GDM+ A +F+++ RDVV+WT++I G+ ++G +GEAI +F++M+G R
Sbjct: 353 LLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ--R 410
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++LS + L + G GKQ+HG +++ + SV + ALI +Y K G + A
Sbjct: 411 PNSYTLAAMLSVASSLASLGH---GKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSA 467
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R F + +D +W +MI +LA + +EAL +F+ M +GLR + IT+V V +AC
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G + F M +++P + HY C+VDL GRAGLL EA+EF+ MP EPD G
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+++ +DL RLL L+P++ G Y L+N+++ +W A +RK+M +
Sbjct: 588 SLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647
Query: 300 IRKIPAYSLIE 310
++K +S IE
Sbjct: 648 VKKEQGFSWIE 658
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 145/318 (45%), Gaps = 41/318 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +++ G MD A+ FE M +RD+V+W S+I+G+ + G A+ +F M+ + +++
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRD-SMLS 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLSVFMG----------- 104
P+ T SVLS+CA L L +G+Q+H +I+ + IVL+ +
Sbjct: 277 PDRFTLASVLSACANLEK---LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 105 -----------------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
TAL+D Y K+G + A +F S+ +DV W AMI +
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL 393
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ +F M + R N T A+L+ + + G ++ S + E+ +
Sbjct: 394 YGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSV-SVSN 452
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQ 265
++ + +AG ++ A + E D +++ A HG + E+ +L L+
Sbjct: 453 ALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512
Query: 266 PKHCGRYVVLSN-IHAGL 282
P H V S HAGL
Sbjct: 513 PDHITYVGVFSACTHAGL 530
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 16/266 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K GDMDS+ F+ + +RD VSWT++I G+ G + +AI + MM +
Sbjct: 86 VLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREG--IE 143
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +VL+S A L GK+VH +I++ + +V + +L+++Y K G A
Sbjct: 144 PSQFTLTNVLASVAA---TRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV+KD+ +WNAMI+ + A+ F++M E+ + +T+ ++++ +
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGYNQR 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDL---LGRAGLLSEAKEFMRSMPFEPDASV 237
L++F ML + P V+ L + + + + + F+ V
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV 316
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
L AL+ G V E RRL+E
Sbjct: 317 LNALISMYSRCGGV----ETARRLIE 338
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEG-----GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
P + ++L C L+ + G + + VH ++++ +V SV++ L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
A ++F M ++ +WN ++S+ A + FD + ++
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQR 109
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 85 GKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G +H L +E+ L + F ++ Y K G ++ + F + +D +W MI
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYK 122
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
+ + +A+ + EM +G+ ++ T VL + A + +E G ++ HS + K
Sbjct: 123 NIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKV-HSFIVKL 175
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++ GD +A +LF+ M +R VVSW ++I+G+ NG F +A+ VF+ M +R
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM--KKGDIR 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LG+ +H Y + I + +G+ALID+Y K G +E+A
Sbjct: 272 PNYVTLVSVLPAISRL---GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + ++V TW+AMI+ A + + +A+ F +M++ G+R +++ ++ +LTAC+
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGR+GLL EA+EF+ +MP +PD + A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ G V++ V L+++ P G YV LSN++A W+ +++R M E I
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508
Query: 301 RKIPAYSLIE 310
RK P SLI+
Sbjct: 509 RKDPGCSLID 518
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 55/288 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGE--AICVFKNMMGNVNLVRPNEATYV 67
D+D A +F M +R+ SW +II GF + AI +F MM + V PN T+
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSD-EFVEPNRFTFP 132
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS---------------------- 100
SVL +CA G + GKQ+HG L+ +E V+S
Sbjct: 133 SVLKACA---KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 101 ------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
+ + +ID Y ++G + A +F M + V +WN MIS
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
+ N K+A+ +F EMK+ +R N +T V+VL A +R +ELG E H + + + I
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLH-LYAEDSGIRI 307
Query: 203 MEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G ++D+ + G++ +A +P E + A++ IHG
Sbjct: 308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHG 354
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G+ G++D A F+ M ++D VSWT++I+G++R+ F EA+ +F+NM V+
Sbjct: 312 IVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN--VK 369
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L LG+ + YI RN+I +F+ ALID+Y K G +++A
Sbjct: 370 PDEFTMVSVLTACAHL---GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 426
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ M +D TW AMI LA N ++AL MF M + + +EIT++ VL+AC
Sbjct: 427 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 486
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M + + P + HYGC+VDLL RAG L EA E + +MP + ++ V GA
Sbjct: 487 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 546
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+++ D+ V +++LEL+P + YV+L NI+A +RWN +LR+ M++ GI
Sbjct: 547 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI 606
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 607 KKXPGCSLIE 616
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 37/260 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y+ G +D+A +F+ K DV++W II+ + + G F E+ +F ++ V
Sbjct: 180 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLF--LVMEDKQVL 237
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T V VLS+C+ L + L GK+VH Y+ ++ ++ + A+ID+Y G ++ A
Sbjct: 238 PTTVTLVLVLSACSKLKD---LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSA 294
Query: 121 IRVFKSM----VI---------------------------KDVCTWNAMISSLASNSREK 149
+ +F+SM +I KD +W AMI ++R K
Sbjct: 295 LGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 354
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F M+ ++ +E T V+VLTACA +ELG E + + + ++ + +
Sbjct: 355 EALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNAL 413
Query: 210 VDLLGRAGLLSEAKEFMRSM 229
+D+ + G + +A+ R M
Sbjct: 414 IDMYFKCGDVDKAESIFREM 433
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 6/221 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD A LF+ + + ++ W ++I G+ R + ++ M+ V+P+ T+
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRG--VKPDRYTFPF 144
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+ G + L G+Q+HG++L++ + +VF+ TAL+ +Y G L+ A VF
Sbjct: 145 LFK---GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 201
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
DV TWN +IS+ + +E+ +F M++K + +T V VL+AC++ + + G +
Sbjct: 202 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 261
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ HS + +V + ++D+ G + A RSM
Sbjct: 262 V-HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 301
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +D+A+ +F+ M +RD++SWT++INGFV+ G EA+ F+ M ++ VR
Sbjct: 137 MIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREM--QISGVR 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L G VH Y++ + +V + +LIDLY + GC+E A
Sbjct: 195 PDYVAIIAALNACTNL---GALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I A+N E+LV F +M+E+G + + +TF LTAC+
Sbjct: 252 REVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHV 311
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F +M + + P +EHYGC+VDL RAG L +A + + SMP +P+ V+G+
Sbjct: 312 GLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGS 371
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 372 LLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLG 431
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 432 LKKQPGFSSIE 442
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 36/236 (15%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VSWTS I RNG EA F +M ++ V PN T++++LS C G G L
Sbjct: 27 TVSWTSRITLLTRNGRLAEAAKXFSDM--RLSGVEPNHITFIALLSGC-GDFPSGSETLS 83
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER------------------------- 119
+HGY + + + V +GTA+I +Y K G +++
Sbjct: 84 NLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMR 143
Query: 120 ------AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
A+++F M +D+ +W AMI+ +EALV F EM+ G+R + + +A
Sbjct: 144 SGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAA 203
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L AC + GL + H + + + ++DL R G + A+E M
Sbjct: 204 LNACTNLGALSFGLWV-HRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 258
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +DSA +FE + +DV+SW ++I G+ +NG EAI V+K MM +
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK-MMEECKEII 517
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L + A + G L G ++HG +++ + L VF+ T LID+YGK G L A
Sbjct: 518 PNQGTWVSILPAYAHV---GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + TWNA+IS + ++ L +F EM ++G++ + +TFV++L+AC+ +
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G F ++ ++ + P ++HYGC+VDLLGRAG L A +F++ MP +PDAS+ GA
Sbjct: 635 GFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGA 693
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L RL E+ K+ G YV+LSNI+A + +W +R E G+
Sbjct: 694 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 753
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 754 KKTPGWSTIE 763
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ + F+ + ++DV +W S+I+ +V NG F EAI F ++ V+ +R
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL-LVSEIR 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C LV+ G+++H + + +VF+ +LI +Y + G A
Sbjct: 216 PDFYTFPPVLKACGTLVD------GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIA 269
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F M +D+ +WNAMIS L N +AL + DEM+ +G++ N +T V++L C +
Sbjct: 270 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 12/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G+++ A F+ M DVVSW SII + +N A F M +N +
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM--QLNGFQ 414
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T VS+ S A + VHG+I+R ++ V +G A++D+Y K+G L+
Sbjct: 415 PDLLTLVSLASIVA---QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDS 471
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A +VF+ + +KDV +WN +I+ A N EA+ ++ M+E K + N+ T+V++L A A
Sbjct: 472 AHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYA 531
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G+++ H + K + + C++D+ G+ G L +A +P E +
Sbjct: 532 HVGALQQGMKI-HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-W 589
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
A++ IHG + ++ +L+ ++P H +LS H+G
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 50/296 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G A LF++M RD+ SW ++I+G ++NG +A+ V M + ++
Sbjct: 256 LIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM--RLEGIK 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T VS+L C L G + +H Y++++ + +F+ ALI++Y K G LE A
Sbjct: 314 MNFVTVVSILPVCPQL---GDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA-- 178
+ F+ M I DV +WN++I++ N A F +M+ G + + +T V++ + A
Sbjct: 371 RKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Query: 179 ---------------RAQLVE------------LGLELFHSMLGKFEVVPIME--HYGCV 209
R L+E L L S FE++P+ + + +
Sbjct: 431 RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTL 490
Query: 210 VDLLGRAGLLSEAKEFMRSM-------PFE-------PDASVLGALLGACKIHGAV 251
+ + GL SEA E + M P + P + +GAL KIHG V
Sbjct: 491 ITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV 546
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
K +H ++ V S+F+ T L++LY +G + + F + KDV WN+MIS+
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193
Query: 144 SNSREKEALVMFDE-MKEKGLRANEITFVAVLTACA 178
N EA+ F + + +R + TF VL AC
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG 229
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+D Y K G +DSA +FE + +DV+SW ++I G+ +NG EAI V+K MM +
Sbjct: 226 FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK-MMEECKEII 284
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L + A + G L G ++HG +++ + L VF+ T LID+YGK G L A
Sbjct: 285 PNQGTWVSILPAYAHV---GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 341
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + TWNA+IS + ++ L +F EM ++G++ + +TFV++L+AC+ +
Sbjct: 342 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 401
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G F ++ ++ + P ++HYGC+VDLLGRAG L A +F++ MP +PDAS+ GA
Sbjct: 402 GFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGA 460
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L RL E+ K+ G YV+LSNI+A + +W +R E G+
Sbjct: 461 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 520
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 521 KKTPGWSTIE 530
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 26/267 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ + F+ + ++DV +W S+I+ +V NG F EAI F ++ V+ +R
Sbjct: 57 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL-LVSEIR 115
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C LV+ G+++H + + +VF+ +LI +Y + G A
Sbjct: 116 PDFYTFPPVLKACGTLVD------GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIA 169
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D+ +WNAMIS L N +AL + DEM+ +G++ N +T V++L
Sbjct: 170 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVD- 228
Query: 181 QLVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSM-------PF 231
+LG L S FE++P+ + + ++ + GL SEA E + M P
Sbjct: 229 MYAKLG--LLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPN 286
Query: 232 E-------PDASVLGALLGACKIHGAV 251
+ P + +GAL KIHG V
Sbjct: 287 QGTWVSILPAYAHVGALQQGMKIHGRV 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
K +H ++ V S+F+ T L++LY +G + + F + KDV WN+MIS+
Sbjct: 34 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93
Query: 144 SNSREKEALVMFDE-MKEKGLRANEITFVAVLTACA 178
N EA+ F + + +R + TF VL AC
Sbjct: 94 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG 129
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD+ A F+ M +RD VSW +II G+ ++G + EA+ +F + + +
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL- 392
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N AT+ LS+CA + L LGKQ+HG ++ F+G AL+ +Y K G ++ A
Sbjct: 393 -NRATFGCALSTCADIA---ALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ + KDV +WN M++ A + ++AL +F+ MK G++ +EIT V VL+AC+
Sbjct: 449 NDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHT 508
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G E F+SM + V+P +HY C++DLLGRAG L EA++ +R+MPF+P A+ GA
Sbjct: 509 GLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGA 568
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + + +++P++ G YV+LSN++A RW A +R M + G+
Sbjct: 569 LLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGV 628
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 629 QKVPGYSWVE 638
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ RDV +WT++++G+V+NG EA F M
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM------PE 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE +Y +++ AG V + + ++ + + ++ +I YG++G + +A
Sbjct: 295 KNEVSYNAMI---AGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F M +D +W A+I+ A + +EAL MF E+K+ G N TF L+ CA
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407
Query: 181 QLVELGLEL 189
+ELG ++
Sbjct: 408 AALELGKQI 416
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 123/286 (43%), Gaps = 72/286 (25%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY++N + A LF+ M +RD+ SW ++ G+VRN G+A +F ++M ++V
Sbjct: 86 MISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF-DLMPEKDVVS 144
Query: 61 PNEATYVSVLSSCA--GLVNEG----------------GLYLGKQVH------------- 89
N S+LS A G V+E GL L VH
Sbjct: 145 WN-----SLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL-LAAYVHNGRIEEACLLFES 198
Query: 90 --------------GYILRNEI-----------VLSVFMGTALIDLYGKVGCLERAIRVF 124
G++ + ++ V +I Y + G L +A R+F
Sbjct: 199 KSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF 258
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+DV TW AM+S N EA FDEM EK NE+++ A++ + + ++
Sbjct: 259 DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMD 314
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ELF SM + + + ++ G+ G +++A++F MP
Sbjct: 315 IARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMP 355
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 117/285 (41%), Gaps = 36/285 (12%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--------- 52
I +++NG DSA+ +F M +R VS+ ++I+G++RN F A +F M
Sbjct: 56 ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115
Query: 53 ---MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY------ILRNEIVLSVFM 103
G V R +A + L +V+ L G +GY + N +
Sbjct: 116 VMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS 175
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
L+ Y G +E A +F+S D+ +WN ++ + +A +FD+M +
Sbjct: 176 WNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVR-- 233
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSE 221
+ I++ +++ A+ + L F+ P + + + G + G+L E
Sbjct: 234 --DAISWNTMISGYAQGGGLSQARRL-------FDESPTRDVFTWTAMVSGYVQNGMLDE 284
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
AK F MP + + S + G + ++ R L E P
Sbjct: 285 AKTFFDEMPEKNEVSYNAMIAGYVQTKKM-----DIARELFESMP 324
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 27/242 (11%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D++ W I+ +RNG A+ VF M R + +Y +++S G + L
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSYNAMIS---GYLRNSKFNL 98
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ + + ++ F ++ Y + L A R+F M KDV +WN+++S A
Sbjct: 99 ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EA +FD M EK N I++ +L A +E LF S ++++
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESK-SDWDLIS--- 206
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+ C++ R L +A+ MP DA ++ G + RRL +
Sbjct: 207 -WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGL----SQARRLFDE 260
Query: 265 QP 266
P
Sbjct: 261 SP 262
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +DSA +F + +DVVSW ++I+G+ +NG EAI V++ MM ++
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYR-MMEECREIK 474
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T+VS+L++ A + G L G ++HG++++ + L VF+GT LIDLYGK G L A
Sbjct: 475 LNQGTWVSILAAYAHV---GALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDA 531
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + WNA+IS + ++AL +F EM+++G++ + +TF+++L+AC+ +
Sbjct: 532 MCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHS 591
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G FH ++ ++ + P ++HYGC+VDLLGRAG L A +F++ MP PDAS+ GA
Sbjct: 592 GLVDEGKWFFH-LMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGA 650
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L RL E+ ++ G YV+LSNI+A + +W +R E G+
Sbjct: 651 LLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 710
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 711 KKTPGWSSIE 720
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ + F+ + ++DV +W S+I+ +VRNG F EAI F ++ V +
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLL-LVTKFQ 172
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ VL +C LV+ G+++H ++ + VF+ +LI +Y + G + A
Sbjct: 173 ADFYTFPPVLKACQTLVD------GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIA 226
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F M +D+ +WNAMIS L N +AL + DEM+ +G+ + +T ++L CA+
Sbjct: 227 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQ 285
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 133/264 (50%), Gaps = 8/264 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+I Y + G + A LF++M RD+ SW ++I+G ++NG +A+ V M + +N+
Sbjct: 213 LIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM- 271
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ T S+L CA L G + +H Y++++ + +F+ ALI++Y K G L
Sbjct: 272 --DSVTVASILPVCAQL---GDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF+ M ++DV +WN++I++ N A F +M+ GL + +T V++ + A+
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ + + ++ + ++ + V+D+ + G++ A + +P + D
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWN 445
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE 263
L+ +G EV R + E
Sbjct: 446 TLISGYTQNGLASEAIEVYRMMEE 469
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ E + S+ SC + L K++H ++ + + S F+ L++LY +G +
Sbjct: 73 KNEEIDFNSLFDSCTKTL------LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSL 126
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE-MKEKGLRANEITFVAVLTACA 178
+ F + KDV TWN+MIS+ N +EA+ F + + +A+ TF VL AC
Sbjct: 127 SRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC- 185
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
Q + G ++ H + K + ++ + R G + A+ MPF
Sbjct: 186 --QTLVDGRKI-HCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPF 235
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++NG +D+A+ +F+ M +RD++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 135 MIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREM--QISGVK 192
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L G VH Y++ + +V + +LIDLY + GC+E A
Sbjct: 193 PDYVAIIAALNACTNL---GALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFA 249
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I A+N E+LV F +M+E+G + + +TF LTAC+
Sbjct: 250 REVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHV 309
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F +M + P +EHYGC+VDL RAG L EA + ++SMP +P+ V+G+
Sbjct: 310 GLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGS 369
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + L ++ K YV+LSN++A +W A+ +R+ M G
Sbjct: 370 LLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLG 429
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 430 LKKQPGFSSIE 440
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D I +VSWTS I RNG EA F +M + V PN T++++LS
Sbjct: 11 DPKIQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDM--RLAGVEPNHITFIALLS 68
Query: 72 SCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
C G + G LG +HGY + V +GTA++ +Y K +++A VF M K
Sbjct: 69 GC-GDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDK 127
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+ TWN MI N + A+ MFD+M E+ L I++ A++ + E L F
Sbjct: 128 NSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDL----ISWTAMINGFVKKGFHEEALAWF 183
Query: 191 HSM 193
M
Sbjct: 184 REM 186
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F + RDVV WT ++ G+V++ F +A+ F +M+ + V
Sbjct: 250 LMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDN--VA 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T SVLS+CA + G L G+ VH YI N+I ++V +GTAL+D+Y K G ++ A
Sbjct: 308 PNDFTLSSVLSACAQM---GALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEA 364
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M +K+V TW +I+ LA + AL +F M + G++ NE+TFV VL AC+
Sbjct: 365 LRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHG 424
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G LF M + + P M+HYGC+VD+LGRAG L +AK+ + +MP +P VLGA
Sbjct: 425 GFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGA 484
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L GAC +H A ++ +G L+ QP H G Y +L+N++ + W A +RK M +
Sbjct: 485 LFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRV 544
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 545 VKAPGYSRIE 554
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 8/250 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + +G ++SA +F+ +D V+WT++ING+V+N C GEA+ F M R
Sbjct: 148 LIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRD---R 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
+A V+ + A LV + G+ VHG Y+ + L ++ +AL+D+Y K G E
Sbjct: 205 SVDAVTVASILRAAALVGDADF--GRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCED 262
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF + +DV W +++ +++ ++AL F +M + N+ T +VL+ACA+
Sbjct: 263 ACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQ 322
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ G L H + ++ + +VD+ + G + EA +MP + +
Sbjct: 323 MGALDQG-RLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVK-NVYTWT 380
Query: 240 ALLGACKIHG 249
++ +HG
Sbjct: 381 VIINGLAVHG 390
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 8/174 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P++ T+ +L + + + + ++ I + L +F+G ALI + G +E
Sbjct: 104 VQPDKHTFPLLLKTFSKSIAQNPF----MIYAQIFKLGFDLDLFIGNALIPAFANSGFVE 159
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF +D W A+I+ N EAL F +M+ + + +T ++L A A
Sbjct: 160 SARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAA 219
Query: 179 RAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ G + F+ G+ ++ + + ++D+ + G +A + +P
Sbjct: 220 LVGDADFGRWVHGFYVEAGRVQLDGYV--FSALMDMYFKCGHCEDACKVFNELP 271
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 195/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V GD+ SA+ LF +M +RD+VSW +II GFV++G A FK M + V+
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG--VK 606
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ +L++CA + L G+++H I + V +GT LI +Y K G ++ A
Sbjct: 607 PDQITFTGLLNACA---SPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDA 663
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF ++ K+V +W +MI+ A + R KEAL +F +M+++G++ + ITFV L+ACA A
Sbjct: 664 HLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHA 723
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F SM F + P MEHYGC+VDL GRAGLL EA EF+ M +PD+ + GA
Sbjct: 724 GLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGA 782
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V+L +V ++ LEL P G YV+LSNI+A W T +RK M++ G+
Sbjct: 783 LLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGV 842
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 843 VKKPGQSWIE 852
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ ++K G +D A+ +F N+ +RD+++WTS+I G R+ F +A +F+ M V+
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVM--EEEGVQ 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ +VS+L +C + L GK+VH + + +++GTAL+ +Y K G +E A
Sbjct: 304 PDKVAFVSLLKACN---HPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + ++V +W AMI+ A + R +EA + F++M E G+ N +TF+++L AC+R
Sbjct: 361 LEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420
Query: 181 QLVELGLEL 189
++ G ++
Sbjct: 421 SALKQGRQI 429
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 153/296 (51%), Gaps = 38/296 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G+ +SA +F+ M +DV SW ++ G+V++ + EA + + M+ + V+
Sbjct: 145 LISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG--VK 202
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+V +L++CA N + G ++ IL +F+GTALI+++ K G ++ A
Sbjct: 203 PDKYTFVYMLNACADAKN---VDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC--- 177
++VF ++ +D+ TW +MI+ LA + + K+A +F M+E+G++ +++ FV++L AC
Sbjct: 260 LKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319
Query: 178 ----------ARAQLVELGLELF------------HSMLGKFEVVPIME-----HYGCVV 210
AR + V L E++ SM EV +++ + ++
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379
Query: 211 DLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ G + EA F M EP+ ++LGAC A+ ++ R+++
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK 435
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G M+ A+ +F + R+VVSWT++I GF ++G EA F M+ + + PN
Sbjct: 351 YTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG--IEPNRV 408
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T++S+L +C+ L G+Q+H I++ + + TAL+ +Y K G L A VF
Sbjct: 409 TFMSILGACS---RPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVF 465
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + ++V WNAMI++ + + A+ F + ++G++ + TF ++L C +E
Sbjct: 466 ERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALE 525
Query: 185 LG 186
LG
Sbjct: 526 LG 527
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +FE + K++VV+W ++I +V++ + A+ F+ ++ ++P+ +
Sbjct: 452 YAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG--IKPDSS 509
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L+ C + L LGK V I+R + + AL+ ++ G L A+ +F
Sbjct: 510 TFTSILNVCK---SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLF 566
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +WN +I+ + + A F M+E G++ ++ITF +L ACA + +
Sbjct: 567 NDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALT 626
Query: 185 LGLELFHSML 194
G L H+++
Sbjct: 627 EGRRL-HALI 635
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
+ +N + G EA+ V ++ + ++ + TY S+L C N G G+++H
Sbjct: 73 NAFLNRLSKAGQLSEAMLVLLSV--DSPHIQIHRQTYSSLLQLCIKHKNLGD---GERIH 127
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
+I ++I +FM LI +Y K G A ++F M KDV +WN ++ + R +
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
EA + ++M + G++ ++ TFV +L ACA A+ V+ G ELF +L
Sbjct: 188 EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLIL 232
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 194/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W ++I G+ G A +++ M + LV P+ TY ++ + + + + L
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTTMAD---VRL 139
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ +H ++R+ +++ +L+ LY G + A +VF M KD+ WN++I+ A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N + +EAL ++ EM KG++ + T V++L+ACA+ + LG + H + K + +
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV-HVYMIKVGLTRNLH 258
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL R G + EAK M
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLFDEM 283
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ A LF+ M+ ++ VSWTS+I G NG EAI +FK M L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLL- 321
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E T+V +L +C+ G+V EG Y + Y + I G ++DL + G ++
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI---EHFG-CMVDLLARAGQVK 377
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
+A KSM ++ +V W ++
Sbjct: 378 KAYEYIKSMPMQPNVVIWRTLL 399
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 198/310 (63%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K +D+A +F+N+ RDVVSW ++I G+++NG EAI ++ +M + L +
Sbjct: 311 MVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGL-K 369
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+VSVL + + L GGL G ++H ++ + L V++ T LIDLY K G L A
Sbjct: 370 PIQGTFVSVLPAYSYL---GGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEA 426
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M + WNA+I+ L + +AL +F +M+++ ++ + +TFV++L AC+ A
Sbjct: 427 MFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHA 486
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M + +VPI +HY C+VD+LGRAG L EA EF++SMP +PD++V GA
Sbjct: 487 GLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGA 546
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ + L EL P++ G YV++SN++A + +W+ +R + +
Sbjct: 547 LLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNL 606
Query: 301 RKIPAYSLIE 310
+K P +S +E
Sbjct: 607 QKTPGWSSME 616
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 148/295 (50%), Gaps = 16/295 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + A +F M RD+V+W SII+ + G A+ +F MM + V
Sbjct: 209 LIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESG--VC 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+ T VS+ S+ A +E G K VH Y+ R V + G A++D+Y K+ ++
Sbjct: 267 PDVLTLVSLASAVAQCGDELG---AKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDA 323
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A +VF ++ +DV +WN +I+ N EA+ ++++M +GL+ + TFV+VL A +
Sbjct: 324 AQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYS 383
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G+ + H++ K + + C++DL + G L EA MP
Sbjct: 384 YLGGLQQGMRM-HALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRR-STGPW 441
Query: 239 GALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGLERWNRA 288
A++ +HG A+ L ++ + E++P H +L+ HAGL R+
Sbjct: 442 NAIIAGLGVHGHGAKALSLFSQMQQE--EIKPDHVTFVSLLAACSHAGLVDQGRS 494
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 9/232 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G + A +F+ M +RDV +W ++++G RN +A+ + M+G V
Sbjct: 108 LVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEG--VA 165
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVL C L G L +H Y +++ + +F+ ALID+YGK+G L A
Sbjct: 166 GDAVTLSSVLPMCVVL---GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEA 222
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++D+ TWN++IS+ + A+ +F M E G+ + +T V++ +A A+
Sbjct: 223 HWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQC 282
Query: 181 QLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
ELG + H + + ++V I+ +VD+ + + A++ ++P
Sbjct: 283 G-DELGAKSVHCYVRRRGWDVGDIIAG-NAMVDMYAKMSKIDAAQKVFDNLP 332
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCL 117
+RP+ T+ ++ + G + Q+H LR ++ +VF +L+ Y + G +
Sbjct: 65 LRPDSFTFPPLVRAAPGPAS------AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRV 118
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A RVF M +DV WNAM+S L N+R +A+ + M +G+ + +T +VL C
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC 178
Query: 178 A----RA-QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
RA LV + H + G+ V ++D+ G+ G+L+EA M
Sbjct: 179 VVLGDRALALVMHVYAVKHGLSGELFVC------NALIDVYGKLGMLTEAHWVFGGMALR 232
Query: 233 PDA---SVLGALLGACKIHGAVDLCH 255
S++ A K+ AV+L H
Sbjct: 233 DLVTWNSIISANEQGGKVAAAVELFH 258
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 195/316 (61%), Gaps = 13/316 (4%)
Query: 3 DGYVKNG---------DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D YV+NG +D A+ FE M +RD+VSW+S+I F +NG EA+ +F+ M
Sbjct: 118 DVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQ 177
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
V V+P+E +SV+S+ + L G L LGK + G+I RN + +V +GTAL+D++ +
Sbjct: 178 -LVGTVKPDEVIVLSVVSAISIL---GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSR 233
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
GC+E ++RVF M ++V TW A+I+ LA + R EAL MF EM+ G + + +TF V
Sbjct: 234 CGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L AC+ LV G +F S+ ++ + P+ EHYGC+VDLLGRAGLL+EA +F+ MP P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
++ + LLGAC H ++L +V ++ EL H G YV+LSN++ G+ RW +R
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRN 413
Query: 294 AMVEAGIRKIPAYSLI 309
+M E I K P SLI
Sbjct: 414 SMREKRISKKPGCSLI 429
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 21/256 (8%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ T+ VL +CA L G +H + + V++ LI YG G L+
Sbjct: 83 VSPDHFTFPFVLKACARLQT------GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLD 136
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTAC 177
A++ F+ M +D+ +W++MI+ A N EAL +F M+ G ++ +E+ ++V++A
Sbjct: 137 FALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAI 196
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ +ELG + + + + + +VD+ R G + E+ M E +
Sbjct: 197 SILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLT 254
Query: 238 LGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRY-VVLSNIHAGL--ERWNRATD 290
AL+ +HG A+ + +E+ R QP H V+++ H GL E W+
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEM--RNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFES 312
Query: 291 LRKAMVEAGIRKIPAY 306
+R E G+ +P +
Sbjct: 313 IRN---EYGMEPLPEH 325
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D + + G ++ ++ +F+ M +R+V++WT++ING +G EA+ +F M + +
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHG--FQ 284
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGT--ALIDLYGKVGC 116
P+ T+ VL +C+ GLV+EG +RNE + ++DL G+ G
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEGWHVFES------IRNEYGMEPLPEHYGCMVDLLGRAGL 338
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNS 146
L A + M I+ + W ++ + +++
Sbjct: 339 LNEACKFVDGMPIRPNSIIWRTLLGACVNHN 369
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD+ A F+ M +RD VSW +II G+ ++G + EA+ +F + + +
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL- 392
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N AT+ LS+CA + L LGKQ+HG ++ F+G AL+ +Y K G ++ A
Sbjct: 393 -NRATFGCALSTCADIA---ALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ + KDV +WN M++ A + ++AL +F+ MK G++ +EIT V VL+AC+
Sbjct: 449 NDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHT 508
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G E F+SM + V+P +HY C++DLLGRAG L EA++ +R+MPF+P A+ GA
Sbjct: 509 GLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGA 568
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IHG +L + + +++P++ G YV+LSN++A RW A +R M + G+
Sbjct: 569 LLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGV 628
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 629 QKVPGYSWVE 638
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ RDV +WT++++G+V+NG EA F M
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM------PE 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE +Y +++ AG V + + ++ + + ++ +I YG++G + +A
Sbjct: 295 KNEVSYNAMI---AGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F M +D +W A+I+ A + +EAL MF E+K+ G N TF L+ CA
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADI 407
Query: 181 QLVELGLEL 189
+ELG ++
Sbjct: 408 AALELGKQI 416
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 123/286 (43%), Gaps = 72/286 (25%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY++N + A LF+ M +RD+ SW ++ G+VRN G+A +F ++M ++V
Sbjct: 86 MISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF-DLMPEKDVVS 144
Query: 61 PNEATYVSVLSSCA--GLVNEG----------------GLYLGKQVH------------- 89
N S+LS A G V+E GL L VH
Sbjct: 145 WN-----SLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL-LAAYVHNGRIEEACLLFES 198
Query: 90 --------------GYILRNEI-----------VLSVFMGTALIDLYGKVGCLERAIRVF 124
G++ + ++ V +I Y + G L +A R+F
Sbjct: 199 KSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF 258
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+DV TW AM+S N EA FDEM EK NE+++ A++ + + ++
Sbjct: 259 DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMD 314
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ELF SM + + + ++ G+ G +++A++F MP
Sbjct: 315 IARELFESMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMP 355
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 117/285 (41%), Gaps = 36/285 (12%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--------- 52
I +++NG DSA+ +F M +R VS+ ++I+G++RN F A +F M
Sbjct: 56 ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115
Query: 53 ---MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY------ILRNEIVLSVFM 103
G V R +A + L +V+ L G +GY + N +
Sbjct: 116 VMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS 175
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
L+ Y G +E A +F+S D+ +WN ++ + +A +FD+M +
Sbjct: 176 WNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVR-- 233
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSE 221
+ I++ +++ A+ + L F+ P + + + G + G+L E
Sbjct: 234 --DAISWNTMISGYAQGGGLSQARRL-------FDESPTRDVFTWTAMVSGYVQNGMLDE 284
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
AK F MP + + S + G + ++ R L E P
Sbjct: 285 AKTFFDEMPEKNEVSYNAMIAGYVQTKKM-----DIARELFESMP 324
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 38/129 (29%)
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G E F+ M ++ V P +HY C++DLLGR L E GAL
Sbjct: 779 LLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------GAL 821
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LGA +IHG +L + + ++ P++ G M + G++
Sbjct: 822 LGASRIHGNTELGEKAAQMFFKMGPQNSG---------------------ISKMRDVGVQ 860
Query: 302 KIPAYSLIE 310
K+P YS E
Sbjct: 861 KVPGYSWFE 869
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 27/242 (11%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D++ W I+ +RNG A+ VF M R + +Y +++S G + L
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSYNAMIS---GYLRNSKFNL 98
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ + + ++ F ++ Y + L A R+F M KDV +WN+++S A
Sbjct: 99 ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EA +FD M EK N I++ +L A +E LF S ++++
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESK-SDWDLIS--- 206
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+ C++ R L +A+ MP DA ++ G + RRL +
Sbjct: 207 -WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGL----SQARRLFDE 260
Query: 265 QP 266
P
Sbjct: 261 SP 262
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D + +F + +D V+W S+I+ F +NG EA+ +F+ M + V+
Sbjct: 490 LMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC--MEGVK 547
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVLS+CA L +Y GK++HG +++ I +F +ALID+YGK G LE A
Sbjct: 548 YSNVTISSVLSACASL---PAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+SM K+ +WN++I+S + KE++ + M+E+G +A+ +TF+A+++ACA A
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL LF M ++++ P MEH+ C+VDL RAG L +A E + MPF+PDA + GA
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+L + L +L P + G YV++SNI+A RW+ + +R+ M + +
Sbjct: 725 LLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKV 784
Query: 301 RKIPAYSLIE 310
+KIP YS ++
Sbjct: 785 QKIPGYSWVD 794
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A ++++ DVV +++I+G+V NG EA+ +F+ ++ +R
Sbjct: 389 LVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG--IR 446
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN SVL +CA + + LG+++H Y L+N ++ +AL+D+Y K G L+ +
Sbjct: 447 PNAVAIASVLPACASM---AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD TWN+MISS A N +EAL +F EM +G++ + +T +VL+ACA
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ G E+ H ++ K + + ++D+ G+ G L A SMP
Sbjct: 564 PAIYYGKEI-HGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 6/192 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K +D LF M + D+V+W +I+G V+NG +A+ +F +M + +R
Sbjct: 288 LVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG--IR 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+L + L + G GK++HGYI+RN + + VF+ +AL+D+Y K + A
Sbjct: 346 PDSVTLVSLLPA---LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMA 402
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
V+ S DV + MIS N +EA+ MF + E+G+R N + +VL ACA
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462
Query: 181 QLVELGLELFHS 192
++LG EL HS
Sbjct: 463 AAMKLGQEL-HS 473
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +F+ M +RD V W +++G+V+ G A+ +F +M +
Sbjct: 187 LIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDM--RASGCE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT LS A E L+ G Q+H ++ + V + L+ +Y K CL+
Sbjct: 245 PNFATLACFLSVSA---TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDG 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M D+ TWN MIS N +AL++F +M++ G+R + +T V++L A
Sbjct: 302 WKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDL 361
Query: 181 QLVELGLEL 189
G EL
Sbjct: 362 NGFNQGKEL 370
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 5/226 (2%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I G G + A+ + M + + P+ T+ V+ SCA L G + LG+
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL---GAIALGR 166
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + +F+G+ALI +Y G L A +VF M +D WN M+
Sbjct: 167 LVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAG 226
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F +M+ G N T L+ A + G++L H++ K+ + +
Sbjct: 227 SVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQL-HTLAVKYGLESEVAVA 285
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+V + + L + + MP + D ++ C +G VD
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVD 330
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 186/310 (60%), Gaps = 7/310 (2%)
Query: 3 DGYVKN--GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
GYV G +D A+ LFE + RBVV W++II GF RNG E+I +F+ M+ + V
Sbjct: 192 SGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQMLADS--VT 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ S++ +C+ L G L G+ VHGY++RN + L V T+ ID+Y K GC+ A
Sbjct: 250 PNSVTFASIVLACSSL---GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTA 306
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + K+V +W+ MI+ + EAL +F EM+ N +TFV+VL+AC+ +
Sbjct: 307 YRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHS 366
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G F SM + + P+ EHY C+VDLLGRAG + EA F+ +MP EP AS GA
Sbjct: 367 GRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGA 426
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +L EV ++LL L+ G YV+LSNI+A + W R M E G+
Sbjct: 427 LLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGL 486
Query: 301 RKIPAYSLIE 310
KI ++ IE
Sbjct: 487 LKIVGFTSIE 496
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 1 MIDG-YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI G Y++ G + A F ++ ++ SW +I+ +N CF + + +FK M+ LV
Sbjct: 1 MIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV 60
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLG-KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ V + +C GL L+ G K H ++ + ++ AL+++Y ++G LE
Sbjct: 61 --DSFNLVFAVKACFGL----SLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLE 114
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +VF+ + +K+ W MI + S E +F M+ G + ++ AC
Sbjct: 115 EAHKVFEEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQAC 173
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 117/269 (43%), Gaps = 30/269 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G ++ A +FE + ++ V W +I G++ F E VF+ R
Sbjct: 103 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGYLN---FSEEFGVFEL------FSR 153
Query: 61 PNEATYVSVLSSCAGLVNE-GGLYLGKQ---VHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+ + GL+ G +Y GK+ HG + V V G
Sbjct: 154 MRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLYFSSGYVYEV------------RGF 201
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+ A+ +F+ + +BV W+A+I+ A N R E++ MF +M + N +TF +++ A
Sbjct: 202 LDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLA 261
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ ++ G + H + + V +++Y +D+ + G + A +P E +
Sbjct: 262 CSSLGSLKQGRSV-HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVF 319
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQ 265
++ +HG LC E E++
Sbjct: 320 SWSTMINGFGMHG---LCAEALNLFYEMR 345
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 196/308 (63%), Gaps = 5/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M +++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 147 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS-VK 205
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A I++Y K G ++ A
Sbjct: 206 PNHITVVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 262
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F+ + +++C+WN+MI SLA++ + EAL +F +M +G + + +TFV +L AC
Sbjct: 263 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 322
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G ELF SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 323 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWG 382
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L +L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 383 TLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 442
Query: 300 IRKIPAYS 307
+ K YS
Sbjct: 443 MTKAAGYS 450
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H R+ F T LI Y K+G L A RVF M +DV WNAMI+
Sbjct: 97 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 156
Query: 148 EKEALVMFDEM--------------------------------KEKGLRANEITFVAVLT 175
K A+ +FD M K+K ++ N IT V+VL
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 216
Query: 176 ACARAQLVELG--LELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPF 231
ACA +E+G LE + G F+ + Y C +++ + G++ AK +
Sbjct: 217 ACANLGELEIGRRLEGYARENGFFDNI-----YVCNATIEMYSKCGMIDVAKRLFEELGN 271
Query: 232 EPDASVLGALLGACKIHGAVD 252
+ + +++G+ HG D
Sbjct: 272 QRNLCSWNSMIGSLATHGKHD 292
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 194/313 (61%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G A +F+ RDVV+W +IN + G +A + M NL R
Sbjct: 152 LIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNL-R 210
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGY---ILRNEIVLSVFMGTALIDLYGKVGCL 117
P+E T VS++ +CA L G L GK +H Y + + EI + + TAL+D+Y K G +
Sbjct: 211 PDEVTMVSLVPACAQL---GNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSI 267
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A++VF+ M +++V TWNA+I LA + ++A+ +FD+M+ L +++TF+A+L AC
Sbjct: 268 DLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCAC 327
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ A LV+ GL +F +M KF++ P MEHYGCVVDLL RA + +A F+ +MP + ++ +
Sbjct: 328 SHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVL 387
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGAC+ G DL ++GRR++EL+P CGRYV+LSN++AG+ +W+ A LRK M
Sbjct: 388 WATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKN 447
Query: 298 AGIRKIPAYSLIE 310
GI K P S IE
Sbjct: 448 KGIEKTPGCSWIE 460
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 9/245 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD++ A LF M D ++I G+ R+ EA+ ++ M+ V + TY
Sbjct: 58 SGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERG--VPVDNYTYP 115
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL++CA L G + LG++ H +L+N +F+ ALI Y G A VF
Sbjct: 116 FVLAACARL---GAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELG 186
++DV TWN MI++ + ++A + DEM K LR +E+T V+++ ACA+ +E G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232
Query: 187 --LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
L + L KFE+ + +VD+ + G + A + R M + AL+G
Sbjct: 233 KFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGG 291
Query: 245 CKIHG 249
+HG
Sbjct: 292 LAMHG 296
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 196/308 (63%), Gaps = 5/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M +++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS-VK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A I++Y K G ++ A
Sbjct: 213 PNHITVVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 269
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F+ + +++C+WN+MI SLA++ + EAL +F +M +G + + +TFV +L AC
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G ELF SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L +L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 390 TLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 449
Query: 300 IRKIPAYS 307
+ K YS
Sbjct: 450 MTKAAGYS 457
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H R+ F T LI Y K+G L A RVF M +DV WNAMI+
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 148 EKEALVMFDEM--------------------------------KEKGLRANEITFVAVLT 175
K A+ +FD M K+K ++ N IT V+VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 176 ACARAQLVELG--LELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPF 231
ACA +E+G LE + G F+ + Y C +++ + G++ AK +
Sbjct: 224 ACANLGELEIGRRLEGYARENGFFDNI-----YVCNATIEMYSKCGMIDVAKRLFEELGN 278
Query: 232 EPDASVLGALLGACKIHGAVD 252
+ + +++G+ HG D
Sbjct: 279 QRNLCSWNSMIGSLATHGKHD 299
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GYV+ G + LF+ M +R+ VSW+++I G+VR G F EA+ +F M+ ++
Sbjct: 183 LINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAML--ISGFW 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN A V +++CA L G L G+ +H YI RN + L MG ALID+Y K GC+E A
Sbjct: 241 PNHAGIVCAINACASL---GALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + +DV + +IS LA++ + A+ +F+ M +G+ NE+TFV+VL AC+R
Sbjct: 298 CSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRM 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +F +M + P ++HYGC+VDLLGRAG L EAK+ ++ MP +PD+ VLGA
Sbjct: 358 GLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGA 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +++G V+L E L +L H G +VVLSN++A +W+ +R+ M + +
Sbjct: 418 LLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKV 477
Query: 301 RKIPAYSLIE 310
RK+P SLI+
Sbjct: 478 RKVPGCSLIK 487
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A LF + R W ++I F +AI +FKNM+ + L PN TY +
Sbjct: 61 LSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFL--PNNYTYSFLF 118
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C L N LYLG H ++ F+ L+ ++ GC++ A ++F +
Sbjct: 119 KACTDLNN---LYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNR 175
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV TW A+I+ + +FD+M E+ N +++ A++T R E LELF
Sbjct: 176 DVITWTALINGYVRAGQVLIGRELFDKMPER----NSVSWSAMITGYVRVGFFEEALELF 231
Query: 191 HSML 194
++ML
Sbjct: 232 NAML 235
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 194/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 33 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 90
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 91 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 147
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 148 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 207
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 208 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 267
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 268 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 327
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 328 PGHSLVE 334
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG+ +H ++R+ +++ +L+ LY G + A +VF M KD+ WN++I+ A
Sbjct: 6 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
N + +EAL ++ EM KG++ + T V++L+ACA+ + LG + H + K + +
Sbjct: 66 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV-HVYMIKVGLTRNL 124
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL R G + EAK M
Sbjct: 125 HSSNVLLDLYARCGRVEEAKTLFDEM 150
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ A LF+ M+ ++ VSWTS+I G NG EAI +FK M L+
Sbjct: 130 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLL- 188
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E T+V +L +C+ G+V EG Y + Y + I G ++DL + G ++
Sbjct: 189 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI---EHFG-CMVDLLARAGQVK 244
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
+A KSM ++ +V W ++ +
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGA 268
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G++K G ++ A FE M +++V+W ++I G++ N + +FK M+ + R
Sbjct: 167 MITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESG--FR 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++ SVL C+ L L LGKQVH I ++ + ++ GT+L+ +Y K G LE A
Sbjct: 225 PNPSSLSSVLLGCSNL---SALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KDV TWNAMIS A + ++AL +FD+M+++G++ + ITFVAVL+AC A
Sbjct: 282 WKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+LG+E F+SM+ + V +HY CVVDLLGR G L EA + ++ MPF+P +++ G
Sbjct: 342 GFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGT 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++L + LL L P+ YV L+N++A + RW+ +R++M + +
Sbjct: 402 LLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKV 461
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 462 IKTPGYSWIE 471
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y+ N D++SA L F+ M +D SW ++I+GF +NG +A +F LV
Sbjct: 74 MLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF--------LVM 125
Query: 61 P--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P N ++ +++S G V G L L KQ + V SV TA+I + K G +E
Sbjct: 126 PVRNSVSWNAMIS---GYVESGDLDLAKQ----LFEVAPVRSVVAWTAMITGFMKFGKIE 178
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A + F+ M +K++ TWNAMI+ N + + L +F M E G R N + +VL C+
Sbjct: 179 LAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCS 238
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG ++ H ++ K V + ++ + + G L +A + MP + D
Sbjct: 239 NLSALKLGKQV-HQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDVVTW 296
Query: 239 GALLGACKIHGA 250
A++ HGA
Sbjct: 297 NAMISGYAQHGA 308
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 27/211 (12%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN-EGGLY 83
+V+S +I +R+G A+ VF++M T V+ S AG N G +
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESM---------TVKTTVTWNSMLAGYSNRRGKIK 54
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ +Q+ I +I F ++ Y +E A F M +KD +WN MIS +
Sbjct: 55 VARQLFDRIPEPDI----FSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFS 110
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
N +A +F M + N +++ A+++ + ++L +L FEV P+
Sbjct: 111 QNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQL-------FEVAPVR 159
Query: 204 EHYGCVVDLLG--RAGLLSEAKEFMRSMPFE 232
+ G + G + A+++ MP +
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEMPMK 190
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE--KEALVMFDE 157
+V +I + + G L A+RVF+SM +K TWN+M++ SN R K A +FD
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGY-SNRRGKIKVARQLFDR 62
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGR 215
+ E +I ++ AC LF F+ +P+ + + ++ +
Sbjct: 63 IPEP-----DIFSYNIMLACYLHNADVESARLF------FDQMPVKDTASWNTMISGFSQ 111
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
G++ +A+E MP S A++ G +DL ++L E+ P
Sbjct: 112 NGMMDQARELFLVMPVRNSVS-WNAMISGYVESGDLDL----AKQLFEVAP 157
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G M+ A +LF+ M +RDV W +++ G+V+N EAI +F M + V
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSK--VD 353
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V++LS+C+ L G L +G VH YI R+++ LSV +GT+L+D+Y K G +++A
Sbjct: 354 PNEITMVNLLSACSQL---GALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKA 410
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF + +++ TW +MI LA++ EA+ F M + GL+ +EITF+ VL+AC A
Sbjct: 411 ICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHA 470
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F M K+ + M+HY C++DLLGRAG L EA++ + +MP +PDA V GA
Sbjct: 471 GLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGA 530
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC++HG + L + +L+EL P G YV+L+N++A +A +R M G+
Sbjct: 531 LFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGV 590
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 591 EKVPGCSCIE 600
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 39/308 (12%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G M A LF+ RDVVSW ++I G+VR+G EA+ +F + + N VRP+E T +
Sbjct: 170 GPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIG 229
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK--- 125
+S CA + G L LGK++H ++ + +V + A++D+Y K G LE A VF+
Sbjct: 230 AVSGCAQM---GDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERIS 286
Query: 126 --------SMVI--------------------KDVCTWNAMISSLASNSREKEALVMFDE 157
+M++ +DV WNA+++ N + KEA+ +F E
Sbjct: 287 NRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHE 346
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M++ + NEIT V +L+AC++ +E+G+ + H + + ++ + +VD+ + G
Sbjct: 347 MQKSKVDPNEITMVNLLSACSQLGALEMGMWV-HHYIDRHKLHLSVALGTSLVDMYAKCG 405
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVL 275
+ +A +P + +A +++ HG D E +R+++ LQP VL
Sbjct: 406 NIKKAICVFNEIPVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 276 SN-IHAGL 282
S HAGL
Sbjct: 465 SACCHAGL 472
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T+ ++ +CA L G V G++ + VF+ A + + G +
Sbjct: 118 RPDHLTFPFLIKACARLQYRS---YGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAF 174
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTAC 177
A R+F ++DV +WN +I + +EAL +F + E G +R +E+T + ++ C
Sbjct: 175 ARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGC 234
Query: 178 ARAQLVELGLEL 189
A+ +ELG L
Sbjct: 235 AQMGDLELGKRL 246
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 201/313 (64%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV +G++ A +F+ M +RDVVSWT+II G+V+ GCF EA+ +F M+
Sbjct: 104 MIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP--P 161
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T S L++CA LV L G+ +H YI ++EI ++ + +L+D+Y K G ++ A
Sbjct: 162 PNEFTLASALAACANLV---ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFA 218
Query: 121 IRVFKS---MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+VF + +K V WNAMI A + + KEA+ +F++MK + + N++TFVA+L AC
Sbjct: 219 AKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 277
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ +LVE G F SM + + P +EHYGC+VDLLGR+GLL EA+E + +MP PDA++
Sbjct: 278 SHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATI 337
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALLGAC+IH ++ +G+ + EL H G +V+L+N+++ +W+ A +R+ +
Sbjct: 338 WGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEV 397
Query: 298 AGIRKIPAYSLIE 310
+G +K P S IE
Sbjct: 398 SGRKKTPGCSSIE 410
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+V V +C N G+ G+Q+ + ++ + ++F+ A+I +Y G ++ A
Sbjct: 30 PNRYTFVFVFKACG---NGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEA 86
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + +D+ +WN MI + A MFDEM E+ + +++ ++ +
Sbjct: 87 RRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDV----VSWTTIIAGYVQV 142
Query: 181 QLVELGLELFHSML 194
+ L+LFH ML
Sbjct: 143 GCFKEALDLFHEML 156
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYV+ G+++ A LF+ M +R VVSW +I G+ ++G F EA+ VF+ M + V
Sbjct: 199 MIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREM--QMAEVP 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LGK VH Y +RN I + +G+ALID+Y K G +E+A
Sbjct: 257 PNYVTLVSVLPAMSRL---GALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKA 313
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ + ++V TW+ +I+ LA + R K+ L F++M+ G+ +++T++ +L+AC+ A
Sbjct: 314 LQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHA 373
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F M+ + P +EHYGC+VDLLGRAGLL E++E + +MP +PD + A
Sbjct: 374 GLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKA 433
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK+HG V++ V L+EL P G YV LSNI+A L W +R M E +
Sbjct: 434 LLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDV 493
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 494 RKDPGCSWIE 503
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 60/290 (20%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D A +F +M + + S+ ++I + +A+ VF M+ + + V PN T+ SV
Sbjct: 60 DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCS-VEPNCFTFPSV 118
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS------------------------ 100
+C L G+QVHG ++ +E V+S
Sbjct: 119 FKACG---RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 175
Query: 101 -----------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
V + +ID Y ++G LE A +F M + V +WN MI+ A
Sbjct: 176 VDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYA 235
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG----LELFHSMLGKFEV 199
+ KEA+ +F EM+ + N +T V+VL A +R +ELG L + +G +V
Sbjct: 236 QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV 295
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ ++D+ + G + +A + +P + + ++ +HG
Sbjct: 296 LG-----SALIDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHG 339
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D + +F + +D V+W S+I+ F +NG EA+ +F+ M + V+
Sbjct: 490 LMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC--MEGVK 547
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVLS+CA L +Y GK++HG +++ I +F +ALID+YGK G LE A
Sbjct: 548 YSNVTISSVLSACASL---PAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+SM K+ +WN++I+S + KE++ + M+E+G +A+ +TF+A+++ACA A
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL LF M ++++ P MEH+ C+VDL RAG L +A E + MPF+PDA + GA
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+L + L +L P + G YV++SNI+A RW+ + +R+ M + +
Sbjct: 725 LLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKV 784
Query: 301 RKIPAYSLIE 310
+KIP YS ++
Sbjct: 785 QKIPGYSWVD 794
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 6/236 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A ++++ DVV +++I+G+V NG EA+ +F+ ++ +R
Sbjct: 389 LVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG--IR 446
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN SVL +CA + + LG+++H Y L+N ++ +AL+D+Y K G L+ +
Sbjct: 447 PNAVAIASVLPACASM---AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLS 503
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD TWN+MISS A N +EAL +F EM +G++ + +T +VL+ACA
Sbjct: 504 HYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASL 563
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ G E+ H ++ K + + ++D+ G+ G L A SMP + + S
Sbjct: 564 PAIYYGKEI-HGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVS 618
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 6/192 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K +D LF M + D+V+W +I+G V+NG +A+ +F +M + +R
Sbjct: 288 LVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG--IR 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+L + L + G GK++HGYI+RN + + VF+ +AL+D+Y K + A
Sbjct: 346 PDSVTLVSLLPA---LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMA 402
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
V+ S DV + MIS N +EA+ MF + E+G+R N + +VL ACA
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462
Query: 181 QLVELGLELFHS 192
++LG EL HS
Sbjct: 463 AAMKLGQEL-HS 473
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +F+ M +RD V W +++G+V+ G A+ +F +M +
Sbjct: 187 LIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDM--RASGCE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT LS A E L+ G Q+H ++ + V + L+ +Y K CL+
Sbjct: 245 PNFATLACFLSVSA---TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDG 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M D+ TWN MIS N +AL++F +M++ G+R + +T V++L A
Sbjct: 302 WKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDL 361
Query: 181 QLVELGLEL 189
G EL
Sbjct: 362 NGFNQGKEL 370
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 5/226 (2%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I G G + A+ + M + + P+ T+ V+ SCA L G + LG+
Sbjct: 110 LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL---GAIALGR 166
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + +F+G+ALI +Y G L A +VF M +D WN M+
Sbjct: 167 LVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAG 226
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F +M+ G N T L+ A + G++L H++ K+ + +
Sbjct: 227 SVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQL-HTLAVKYGLESEVAVA 285
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+V + + L + + MP + D ++ C +G VD
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVD 330
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 8/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-NVNLV 59
M+ GY ++G +D A LF+ M +DVV W ++I G+V EA+ +F M N+N
Sbjct: 252 MVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNIN-- 309
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+E T VS LS+C+ L G L +G +H YI ++E+ L+V +GTALID+Y K G + +
Sbjct: 310 -PDEVTMVSCLSACSQL---GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITK 365
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+VF+ + ++ TW A+IS LA + A+ F EM + + +E+TF+ +L+AC
Sbjct: 366 AIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 425
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G + F M KF + P ++HY C+VDLLGRAGLL EA+E ++SMP E DA V G
Sbjct: 426 GGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWG 485
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL AC+IHG V + +LL++ P G YV+L+N++ E W A RK M + G
Sbjct: 486 ALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRG 545
Query: 300 IRKIP-AYSLI 309
+ K P ++SL+
Sbjct: 546 VEKTPDSWSLL 556
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 48/244 (19%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V GD+D A +F+ RD+VSW S+ING+ N
Sbjct: 197 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGN-------------------------- 230
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
L S L + + N+ ++S T ++ Y + G L+ A ++F
Sbjct: 231 ----LESARKLFDS-------------MTNKTMVS---WTTMVVGYAQSGLLDMAWKLFD 270
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M KDV WNAMI +R KEAL +F+EM+ + +E+T V+ L+AC++ +++
Sbjct: 271 EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 330
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
G+ + H + K E+ + ++D+ + G +++A + + +P ++ A++
Sbjct: 331 GIWI-HHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGL 388
Query: 246 KIHG 249
+HG
Sbjct: 389 ALHG 392
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D + N + SW I GF+ + EA+ ++K ++ + +P+ TY +
Sbjct: 99 DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVL-QCDGTKPDNYTYPLL 157
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+CA L + +G ++ G++L +F+ A+I L G L+ A ++F +
Sbjct: 158 FKACARL---SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCV 214
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN+MI+ N L FD M K + +++ ++ A++ L+++ +L
Sbjct: 215 RDLVSWNSMINGYCGNLESARKL--FDSMTNKTM----VSWTTMVVGYAQSGLLDMAWKL 268
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
F M K +VVP G V L+ E M++M PD + + L AC G
Sbjct: 269 FDEMPDK-DVVPWNAMIGGYVHANRGKEALALFNE-MQAMNINPDEVTMVSCLSACSQLG 326
Query: 250 AVDL 253
A+D+
Sbjct: 327 ALDV 330
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDM SA LF M +++ VSWT++I+G+ RNG +A+ +F MM + VR
Sbjct: 264 MVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM--LFHVR 321
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ S L +CA + + L GKQ+H Y+LR + + +ALID+Y K G L
Sbjct: 322 PDQFTFSSCLCACASIAS---LKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIG 378
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF M K DV WN +IS+LA + +EA+ M D+M G + ++ITFV +L AC+
Sbjct: 379 RKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSH 438
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ GL F SM + +VP EHY C++DLLGRAG E + + MP++PD V
Sbjct: 439 SGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWN 498
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C+IHG ++L + RL+EL+P+ YV+LS+I+A L RW +R+ M E
Sbjct: 499 ALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQ 558
Query: 300 IRKIPAYSLIE 310
++K A S +E
Sbjct: 559 VKKERAISWLE 569
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 21/269 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY K G + A LF+ M ++DVVSW +++ + G + EA+ + +G
Sbjct: 132 MLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLG---- 187
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ N ++ VL+ C L G L +QVHG IL + +V + ++++D Y K G +
Sbjct: 188 IQCNGFSFAGVLTVCVKLKEVG---LTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMG 244
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F M +DV W M+S A K A +F EM EK N +++ A+++ A
Sbjct: 245 DARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEK----NPVSWTALISGYA 300
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPDA 235
R + LELF M+ F V P + + L K+ ++ + F+P+
Sbjct: 301 RNGMGHKALELFTKMM-LFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNT 359
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLEL 264
V+ AL+ G++ +GR++ +L
Sbjct: 360 IVVSALIDMYSKCGSLG----IGRKVFDL 384
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 42/206 (20%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCL 117
+R + T S+L CA + L GK+VH ++ L F+ LI++Y K G
Sbjct: 55 LRLDSRTLASLLQHCA---DSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKE 111
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK---------------- 161
A +VF M +++ +WN M+S A K A +FD+M EK
Sbjct: 112 VEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCG 171
Query: 162 ---------------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
G++ N +F VLT C + L E+GL + G+ V + +
Sbjct: 172 YWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVK--LKEVGLT--RQVHGQILVAGFLSNV 227
Query: 207 ---GCVVDLLGRAGLLSEAKEFMRSM 229
V+D + GL+ +A++ M
Sbjct: 228 VLSSSVLDAYVKCGLMGDARKLFDEM 253
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 201/313 (64%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV +G++ A +F+ M +RDVVSWT+II G+V+ GCF EA+ +F M+
Sbjct: 189 MIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP--P 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T S L++CA LV L G+ +H YI ++EI ++ + +L+D+Y K G ++ A
Sbjct: 247 PNEFTLASALAACANLV---ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFA 303
Query: 121 IRVFKS---MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+VF + +K V WNAMI A + + KEA+ +F++MK + + N++TFVA+L AC
Sbjct: 304 AKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 362
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ +LVE G F SM + + P +EHYGC+VDLLGR+GLL EA+E + +MP PDA++
Sbjct: 363 SHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATI 422
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALLGAC+IH ++ +G+ + EL H G +V+L+N+++ +W+ A +R+ +
Sbjct: 423 WGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEV 482
Query: 298 AGIRKIPAYSLIE 310
+G +K P S IE
Sbjct: 483 SGRKKTPGCSSIE 495
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
G + A LF+ + K DV + ++I V ++ +F +M+ V+ PN T+V
Sbjct: 63 GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMV-RVSGFLPNRYTFV 121
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
V +C N G+ G+Q+ + ++ + ++F+ A+I +Y G ++ A RVF
Sbjct: 122 FVFKACG---NGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS 178
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ +D+ +WN MI + A MFDEM E+ + +++ ++ + + L
Sbjct: 179 LDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDV----VSWTTIIAGYVQVGCFKEAL 234
Query: 188 ELFHSML 194
+LFH ML
Sbjct: 235 DLFHEML 241
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 194/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W ++I G+ G A +++ M + LV P+ TY ++ + + + + L
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTTMAD---VRL 139
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ +H ++R+ +++ +L+ LY G + A +VF M KD+ WN++I+ A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N + +EAL ++ EM KG++ + T V++L+ACA+ + LG + H + K + +
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV-HVYMIKVGLTRNLH 258
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL R G + EAK M
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLFDEM 283
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ A LF+ M+ ++ VSWTS+I G NG EAI +FK M L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLL- 321
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E T+V +L +C+ G+V EG Y + Y + I G ++DL + G ++
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI---EHFG-CMVDLLARAGQVK 377
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
+A KSM ++ +V W ++
Sbjct: 378 KAYEYIKSMPMQPNVVIWRTLL 399
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDG+ KNGDMD A+ LF+ M +++VVSWT++++GF RNG +A+ +F M+ VR
Sbjct: 287 LIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEG--VR 344
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VS LS+CA + GGL G ++H YI N + L+ +GTAL+D+Y K G +E A
Sbjct: 345 PNAFTIVSALSACAKI---GGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESA 401
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF K + TW MI A + ++A+ F +M G++ +E+ F+A+LTAC +
Sbjct: 402 SEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHS 461
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V++GL F SM + + P M+HY +VD+LGR+G L EA F+ MP PD + GA
Sbjct: 462 GQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGA 521
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC+ H + +LL+L+P H G Y+ LSN +A L +W A +R M G+
Sbjct: 522 LFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGV 581
Query: 301 RKIPAYSLIE 310
K +S IE
Sbjct: 582 HKNSGWSCIE 591
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 138/345 (40%), Gaps = 109/345 (31%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++ ++ +F + +++ ++ ++I G N F AI F+ M+ + ++P+ TY VL
Sbjct: 129 INHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSG--IKPDRLTYPFVL 186
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV---------------- 114
S AGL + LG +H ILR I L F+ +L+D+Y KV
Sbjct: 187 KSMAGLFST---ELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPER 243
Query: 115 --------------------GCLERAIRVFKSMVIKD----------------------- 131
G +++A+++FK+M K+
Sbjct: 244 FDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMEL 303
Query: 132 --------VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
V +W M+ + N ++AL MF +M E+G+R N T V+ L+ACA+ +
Sbjct: 304 FDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGL 363
Query: 184 ELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEF----------------- 225
E GL + H + K + + E G +VD+ + G + A E
Sbjct: 364 EAGLRI-HKYI-KDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIW 421
Query: 226 --------------MRSMPF---EPDASVLGALLGACKIHGAVDL 253
+ M F +PD V ALL AC G VD+
Sbjct: 422 GWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDI 466
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P EA ++S++ ++ Q+H I+ + + S + T LI + +
Sbjct: 79 PTEAHFISLIHGSKTILQL------HQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHS 132
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF K++ T+NA+I L +NS A+ F M G++ + +T+ VL + A
Sbjct: 133 LAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGL 192
Query: 181 QLVELGLELFHSML 194
ELG+ + H M+
Sbjct: 193 FSTELGMAI-HCMI 205
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+++A L+F+ M RD+VSWTS+I+G+ NG E + F M + V
Sbjct: 859 LVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG--VI 916
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +SVL +C L G L G+ H Y+++ + + TA++D+Y K G L+ A
Sbjct: 917 PNRVSILSVLLACGNL---GALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 973
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F KD+ W+AMI+S + ++A+ +FD+M + G+R + +TF VL+AC+ +
Sbjct: 974 RCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHS 1033
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F M +F + + +Y C+VDLLGRAG LSEA + + +MP EPDAS+ G+
Sbjct: 1034 GLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +DL ++ L L P H G +V+LSNI+A RWN +RK M G
Sbjct: 1094 LLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGA 1153
Query: 301 RKIPAYSLIE 310
KI +SL+E
Sbjct: 1154 NKIQGFSLVE 1163
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 197/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K D A+ LF+ + K+DVVSW ++++G+ +NG +++ VF+NM+ + ++
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDG--IQ 405
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +L++ + L G +HGY++R+ +VF+G +LI+LY K G L A
Sbjct: 406 PDAVAVVKILAASSEL---GIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDA 462
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
+++FK M+++DV W++MI++ + R EAL +FD+M K +R N +TF+++L+AC+
Sbjct: 463 VKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL++F M+ +++ P EH+G +VDLLGR G L +A + + MP V G
Sbjct: 523 AGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWG 582
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC+IH +++ + L L P H G Y++LSNI+A +W+ +LR + E G
Sbjct: 583 ALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERG 642
Query: 300 IRKIPAYSLIE 310
++K+ S++E
Sbjct: 643 LKKMFGQSMVE 653
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 10/269 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G M A+ +FE + D V WTS++ G+ +N EA+ +F M+ ++ V
Sbjct: 145 LVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV-MMDCVV 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VSV+S+CA L+N + G VHG ++R E + + +L++LY K GC + A
Sbjct: 204 LDPVTLVSVVSACAQLLN---VKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIA 260
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KDV +W+ MI+ A+N EAL +F EM EK N +T V+ L ACA +
Sbjct: 261 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 320
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ +E G ++ + K FE+ + ++D+ + EA + + +P + D
Sbjct: 321 RNLEEGKKIHKIAVWKGFELDFSVS--TALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWV 377
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQP 266
ALL +G V R +L +QP
Sbjct: 378 ALLSGYAQNGMAYKSMGVFRNMLSDGIQP 406
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 18/285 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV +D+A ++FE++ W +I GF +G F ++ ++ MM ++P++
Sbjct: 762 YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG--LKPDKF 819
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ L SCAGL + L GK +H +++ +F+ AL+D+Y K G +E A VF
Sbjct: 820 AFPFALKSCAGLSD---LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF 876
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M ++D+ +W +MIS A N E L FD M+ G+ N ++ ++VL AC +
Sbjct: 877 DKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALR 936
Query: 185 LGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
G E FHS + + FE ++ ++D+ + G L A+ + D A++
Sbjct: 937 KG-EWFHSYVIQTGFEFDILVA--TAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMI 992
Query: 243 GACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
+ IHG A+DL ++ + ++P H VLS H+GL
Sbjct: 993 ASYGIHGHGRKAIDLFDQMVKA--GVRPSHVTFTCVLSACSHSGL 1035
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 11/286 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G A LF M ++DV+SW+++I + N EA+ +F M+
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK--RFE 304
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VS L +CA N L GK++H + L + TALID+Y K C + A
Sbjct: 305 PNSVTVVSALQACAVSRN---LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ + KDV +W A++S A N +++ +F M G++ + + V +L A +
Sbjct: 362 VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ + L L H + + + +++L + G L +A + + M D + +
Sbjct: 422 GIFQQALCL-HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSS 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLE---LQPKHCGRYVVLSNI-HAGL 282
++ A IHG E+ ++++ ++P + +LS HAGL
Sbjct: 480 MIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGL 525
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 14/266 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + +A +F+ +V W S + + R + E + +F M+ P+
Sbjct: 46 YAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEA-PDNF 104
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLERAIRV 123
T L +CAGL L LGK +HG+ +N EI +F+G+AL++LY K G + A++V
Sbjct: 105 TIPIALKACAGLRM---LELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKV 161
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQL 182
F+ D W +M++ N+ +EAL +F +M + + +T V+V++ACA+
Sbjct: 162 FEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLN 221
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
V+ G H ++ + E + +++L + G A MP E D ++
Sbjct: 222 VKAG-SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI 279
Query: 243 GACKIHG-----AVDLCHEVGRRLLE 263
AC + A++L HE+ + E
Sbjct: 280 -ACYANNEAANEALNLFHEMIEKRFE 304
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H + + I+ F T L LY K L+ A +VF +V WN+ + S
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 147 REKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF-EVVPIME 204
+ +E L +F M G + T L ACA +++ELG ++ H K E+ M
Sbjct: 82 QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG-KVIHGFAKKNDEIGSDMF 140
Query: 205 HYGCVVDLLGRAGLLSEA----KEFMR 227
+V+L + G + EA +EF R
Sbjct: 141 VGSALVELYSKCGQMGEALKVFEEFQR 167
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ E+ Y ++ S G K+ H I + + T +Y ++
Sbjct: 711 IKATESKYKTI-GSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRID 769
Query: 119 RAIRVFKSMVIKDVCT--WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A VF+ I + C+ WN MI A++ R +L ++ +M EKGL+ ++ F L +
Sbjct: 770 AASIVFED--IPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKS 827
Query: 177 CA 178
CA
Sbjct: 828 CA 829
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 183/304 (60%), Gaps = 5/304 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +G M A+ +F M +R+ VSW S+I+GFV+NG EA+ F M + R
Sbjct: 390 MIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAK--R 447
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +TY LS+CA L L++G+Q H + R+ + F G ALI Y K G + A
Sbjct: 448 ADWSTYACCLSACADLA---ALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEA 504
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M D+ +WNA+I ASN EA+ +F EM++ +R +E+TFV VL+AC+ A
Sbjct: 505 RQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHA 564
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G + F+SM + + P+ EHY C+VDLLGR+G LSEA E ++ M +P+A V GA
Sbjct: 565 GLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGA 624
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC++H +L +L EL+P YV+LSNI A +W+ A ++R + E G+
Sbjct: 625 MLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGV 684
Query: 301 RKIP 304
K P
Sbjct: 685 HKTP 688
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 131/329 (39%), Gaps = 82/329 (24%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFK---------- 50
M++GYV+ GD+DSA LF + +VVSW +++NG+ R G GEA +F
Sbjct: 204 MLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAW 263
Query: 51 NMM--GNVNLVRPNEA----------TYVSVLSSCAGLVNEGGLYLGKQV---------- 88
N+M G + L EA +S + + LV G L K +
Sbjct: 264 NVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFA 323
Query: 89 ------HGYILRNEI-----------VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
HGY+ I V +I Y G L+ A+ +F+ M KD
Sbjct: 324 AKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKD 383
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGL---------------------------- 163
+ +WN MI+ A + + ++A+ +F +M ++
Sbjct: 384 MVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRR 443
Query: 164 ---RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
RA+ T+ L+ACA + +G + FHS+L + + ++ + G +
Sbjct: 444 DAKRADWSTYACCLSACADLAALHVGRQ-FHSLLARSGYIGDSFAGNALISAYAKCGRIL 502
Query: 221 EAKEFMRSMPFEPDASVLGALLGACKIHG 249
EA++ MP PD AL+ +G
Sbjct: 503 EARQVFDEMP-APDIVSWNALIDGYASNG 530
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K+G D A+ L M D++SW S++ G RNG A+ F M
Sbjct: 142 MISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPAR----- 196
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
VS G V G + + + +V V L++ Y + G + A
Sbjct: 197 ----DMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWV----TLLNGYCRAGRIGEA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + ++V WN M+S S +EA +F EM +K N I++ +++A R
Sbjct: 249 RELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDK----NSISWTTMISALVRG 304
Query: 181 QLVELGLELFHSM 193
++ +L M
Sbjct: 305 GKLQEAKDLLDKM 317
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
+ G L A R+F SM ++ ++NAM+S+LA + R +A +FDE+ R N +++
Sbjct: 22 ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIP----RRNTVSWN 77
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
A++ AC+ V +LF +M + + +V RAG L A++ + MP
Sbjct: 78 AMIAACSDHGRVADARDLFDAMPARDGF-----SWTLMVSCYARAGELGLARDALDRMPG 132
Query: 232 EPDASVLGALLGACKIHGAVD 252
+ + A++ HG D
Sbjct: 133 DKCTACYNAMISGYAKHGRFD 153
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 25/232 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ ++G + A LF+ + +R+ VSW ++I +G +A +F M
Sbjct: 48 MLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPAR----- 102
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++ SC E GL + R A+I Y K G + A
Sbjct: 103 --DGFSWTLMVSCYARAGELGL-----ARDALDRMPGDKCTACYNAMISGYAKHGRFDDA 155
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ + + M D+ +WN+++ L N A+ FDEM + + +++ +L RA
Sbjct: 156 VALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDM----VSWNLMLEGYVRA 211
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMP 230
V+ S G F VP V L G RAG + EA+E +P
Sbjct: 212 GDVD-------SAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIP 256
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDM+ A +LF+ M +++V+WT II+GF G EA ++ M ++
Sbjct: 257 MVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQM--EAAGLK 314
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S+L++CA G L LGK+VH I + I SV + AL+D+Y K G +++A
Sbjct: 315 PDDGTLISILAACA---ESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKA 371
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F M ++D+ +WN M+ LA + ++A+ +F +M+++G + +++T +A+L AC A
Sbjct: 372 LSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHA 431
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL F+SM +VP +EHYGC++DLLGR G L EA ++SMP EP+ + G
Sbjct: 432 GFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGT 491
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H AV L +V RL+ L+ G Y +LSNI A WN ++R M G+
Sbjct: 492 LLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGV 551
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 552 QKPSGASSIE 561
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G VK GD+ A LF+ M +RD VSW +I++G+V+ G +A +F+ M
Sbjct: 195 MIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKM-------- 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P RN + S ++ Y K G +E A
Sbjct: 247 PE-------------------------------RNVVSWST-----MVSGYCKTGDMEMA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K++ TW +IS A KEA ++++M+ GL+ ++ T +++L ACA +
Sbjct: 271 RMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAES 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ LG ++ H+ + K + + +VD+ + G + +A M D
Sbjct: 331 GLLVLGKKV-HASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR-DLVSWNC 388
Query: 241 LLGACKIHG 249
+L +HG
Sbjct: 389 MLQGLAMHG 397
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M+ A+ +F + +V + ++I V+N +A F +M N + + TY +L
Sbjct: 71 MNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNG--LFADNFTYPFLL 128
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--ERAIRVFKSMV 128
+C G +G L + +H ++ + +F+ +LID Y K G L A+++F M
Sbjct: 129 KACNG---KGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG 185
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KD+ +WN+MI L A +FDEM E+ + +++ +L +A +
Sbjct: 186 EKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER----DAVSWNTILDGYVKAGEMSQAFN 241
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
LF M + V + +V + G + A+ MPF+
Sbjct: 242 LFEKMPERNVV-----SWSTMVSGYCKTGDMEMARMLFDKMPFK 280
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K+VH I++ + +++ LI + + A+ VF + +V +N +I + N
Sbjct: 40 KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
S+ +A F +M++ GL A+ T+ +L AC
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKAC 131
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 192/298 (64%), Gaps = 5/298 (1%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA +F+ +D V+W+++I G+ R G A+ +F+ M V V P+E T VSVLS+
Sbjct: 285 SAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREM--QVTGVCPDEITMVSVLSA 342
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
CA L G L LGK + YI R I+ SV + ALID++ K G ++RA++VF+ M ++ +
Sbjct: 343 CADL---GALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTI 399
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
+W +MI LA + R EA+++FDEM E+G+ +++ F+ VL+AC+ + LV+ G F++
Sbjct: 400 VSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNT 459
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
M F +VP +EHYGC+VD+L RAG ++EA EF+R+MP EP+ + +++ AC G +
Sbjct: 460 MENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELK 519
Query: 253 LCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
L V + L+ +P H YV+LSNI+A L RW + T +R+ M G+RKIP ++IE
Sbjct: 520 LGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIE 577
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 13/231 (5%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D + ++I F + F N M + V PN+ T+ VL +CAG++ L L
Sbjct: 190 DAFLFNTLIRAFAQTTHSKPHALRFYNTMRR-HAVSPNKFTFPFVLKACAGMMR---LEL 245
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLY------GKVGCLERAIRVFKSMVIKDVCTWNAM 138
G VH +++ + L+ +Y G G + A +VF +KD TW+AM
Sbjct: 246 GGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAM 304
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
I A A+ +F EM+ G+ +EIT V+VL+ACA +ELG + S + +
Sbjct: 305 IGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKN 363
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++ +E ++D+ + G + A + R M S ++G +HG
Sbjct: 364 IMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLA-MHG 413
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K GD+D A+ +F M R +VSWTS+I G +G EA+ VF MM V
Sbjct: 374 LIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQG--VD 431
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ ++ VLS+C +GLV++G Y + + IV + ++D+ + G +
Sbjct: 432 PDDVAFIGVLSACSHSGLVDKGHYYFNTMENMF----SIVPKIEHYGCMVDMLSRAGRVN 487
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A+ ++M ++ + W +++++
Sbjct: 488 EALEFVRAMPVEPNQVIWRSIVTA 511
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 87 QVHGYILR-----NEIVLSVFMGTALIDLYGKVGCLERAIRVF------KSMVIKDVCTW 135
Q+H IL+ N +VL+ F T+ + A V D +
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATS-----SHFNAVHYASSVLFPNDQTTPPPSHDAFLF 194
Query: 136 NAMISSLASNSREK-EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
N +I + A + K AL ++ M+ + N+ TF VL ACA +ELG + SM+
Sbjct: 195 NTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMV 254
Query: 195 G-KFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
FE P + H C G +G +S K F S P + D+ A++G
Sbjct: 255 KFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDES-PVK-DSVTWSAMIG 306
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 190/310 (61%), Gaps = 9/310 (2%)
Query: 5 YVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
Y K G++ A +FE M + +D V WT++I+GFVRN A+ F+ M G VR
Sbjct: 175 YGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN--VR 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+C+ L G L +G+ VH Y+ + EI L++F+G ALI++Y + G ++ A
Sbjct: 233 PNEFTIVCVLSACSQL---GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 289
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV T+N MIS L+ N + ++A+ +F M + LR +TFV VL AC+
Sbjct: 290 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 349
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++FHSM + V P +EHYGC+VDLLGR G L EA + +R+M PD +LG
Sbjct: 350 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 409
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H ++L +V + L + G YV+LS+++A +W A +R M EAG+
Sbjct: 410 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 470 QKEPGCSSIE 479
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 16/260 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ +V +T++I+GFV +G + +AI ++ M+ + L P+ S+L
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSIL--PDNYLMASIL 137
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--- 127
+C + L G++VH L+ + + + +++LYGK G L A RVF+ M
Sbjct: 138 KACGSQL---ALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 194
Query: 128 -VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
V KD W AMI N AL F M+ + +R NE T V VL+AC++ +E+G
Sbjct: 195 VVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 254
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
HS + KFE+ + ++++ R G + EA+ M + D ++
Sbjct: 255 -RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLS 312
Query: 247 IHG----AVDLCH-EVGRRL 261
++G A++L +GRRL
Sbjct: 313 MNGKSRQAIELFRVMIGRRL 332
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + G +D A +F+ M RDV+++ ++I+G NG +AI +F+ M+G +R
Sbjct: 276 LINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG--RRLR 333
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T+V VL++C+ GLV+ G Y + +I ++DL G+VG LE
Sbjct: 334 PTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIE----HYGCMVDLLGRVGRLE 389
Query: 119 RAIRVFKSM 127
A + ++M
Sbjct: 390 EAYDLIRTM 398
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H ++RN FM L+ K ++ A R+F+ +V + A+I S+
Sbjct: 51 IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+A+ ++ M + + ++L AC + G E+ HS K +
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV-HSRALKLGLSSNRLVRL 169
Query: 208 CVVDLLGRAGLLSEAKEFMRSMP 230
+++L G+ G L +A+ MP
Sbjct: 170 RIMELYGKCGELGDARRVFEEMP 192
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G M+ A +LF+ M +RDV W +++ G+V+N EAI +F M + V
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEM--QESKVD 353
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V++LS+C+ L G L +G VH YI R+++ LSV +GT+L+D+Y K G +++A
Sbjct: 354 PNEITMVNLLSACSQL---GALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKA 410
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I +FK + K+ TW AMI LA++ EA+ F M + GL+ +EITF+ VL+AC A
Sbjct: 411 ICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHA 470
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M K+ + M+HY C++DLLGRAG L EA++ + +MP +PDA V GA
Sbjct: 471 GLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGA 530
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC++HG + L + +L+EL P G YV+L+N++A +A +R M G+
Sbjct: 531 LFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGV 590
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 591 EKVPGCSCIE 600
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 159/314 (50%), Gaps = 39/314 (12%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G M A LF+ RDVVSW ++I G+VR+G EA+ +F ++ + VRP+E T +
Sbjct: 169 SGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMI 228
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK-- 125
+S CA + G L LGK++H ++ + +V + A++D+Y K G LE A VF+
Sbjct: 229 GAVSGCAQM---GDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERI 285
Query: 126 ---------SMVI--------------------KDVCTWNAMISSLASNSREKEALVMFD 156
+M++ +DV WNA+++ N + KEA+ +F
Sbjct: 286 DNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFH 345
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
EM+E + NEIT V +L+AC++ +E+G+ + H + + ++ + +VD+ +
Sbjct: 346 EMQESKVDPNEITMVNLLSACSQLGALEMGMWV-HHYIDRHQLYLSVALGTSLVDMYAKC 404
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVV 274
G + +A + +P + +A A++ HG D E +R+++ LQP V
Sbjct: 405 GNIKKAICIFKEIP-DKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGV 463
Query: 275 LSN-IHAGLERWNR 287
LS HAGL + R
Sbjct: 464 LSACCHAGLVKEGR 477
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T+ +L +CA L G V G++ + VF+ A + + G +
Sbjct: 118 RPDHLTFPFLLKACARLQYRP---YGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVL 174
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTAC 177
A R+F +DV +WN +I + +EAL +F + E G +R +E+T + ++ C
Sbjct: 175 ARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGC 234
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
A+ +ELG L H + V + V+D+ + G L AK
Sbjct: 235 AQMGDLELGKRL-HEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAK 279
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV+N +D AI LF M +++ +SWT++ING+VR G EA + N M N +
Sbjct: 157 MIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLL-NQMPYRN--K 213
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+++T+ LSSCA L L +GKQ+H ++++ +F+ ALI +Y K G + A
Sbjct: 214 PDQSTFACGLSSCAHL---AALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK + DV +WN++I++ A N +EAL +F +M+ +G+ +E+TFV +L+AC+
Sbjct: 271 ELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL+LF M+ + + P+ EHY C+VDLLGRAG L EA + +R M +A + GA
Sbjct: 331 GLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGA 390
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG ++L +LLE +P YV+LSN+ A RW+ +R+ M E G
Sbjct: 391 LLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGA 450
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 451 EKQPGWSWIE 460
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 106/266 (39%), Gaps = 59/266 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY KN D A LF+ M +D+VSW S++ G+ RNG + F+ M
Sbjct: 33 MVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA------- 85
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS G V G L + I V V M + + G + A
Sbjct: 86 --ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG----FARFGKIAEA 139
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M I++V WNAMI++ N EA+ +F EM EK N I++ V+
Sbjct: 140 RRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYV-- 193
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF--EPDASVL 238
R G L EA++ + MP+ +PD S
Sbjct: 194 ----------------------------------RMGKLDEARQLLNQMPYRNKPDQSTF 219
Query: 239 GALLGACKIHGAVDLCHEVGRRLLEL 264
L +C A+ +VG++L +L
Sbjct: 220 ACGLSSCAHLAAL----QVGKQLHQL 241
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 107 LIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
+I Y + G L +A +F + K VC NAM++ A N + EA +FD M K L
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCC-NAMVAGYAKNRQFDEARRLFDAMPAKDL- 58
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+++ ++LT R + LGL+ F M + +VV + +VD G L+ + E
Sbjct: 59 ---VSWNSMLTGYTRNGEMRLGLQFFEEMAER-DVV----SWNLMVDGFVEVGDLNSSWE 110
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
F +P S + L G + + RRL + P
Sbjct: 111 FFEKIPNPNTVSWVTMLCGFARFGKIAE-----ARRLFDQMP 147
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 199/315 (63%), Gaps = 12/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G+M+SA LF+ + KRDVV+W ++I G+V G +A+ +F+ M L
Sbjct: 216 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-- 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI----LRNEIVLSVFMGTALIDLYGKVGC 116
P+E T +S+LS+C L G L G+++H I R+ LSV +G ALID+Y K G
Sbjct: 274 PDEVTMLSLLSACTDL---GDLDAGQRIHCCISEMGFRD---LSVLLGNALIDMYAKCGS 327
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ RA+ VF+ M KDV TWN+++ LA + ++++ +F EM++ +R +EITFV VL A
Sbjct: 328 IVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVA 387
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A VE G + F M ++ + P + HYGC+VDLLGRAGLL+EA +F+ +M EP+A
Sbjct: 388 CSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAI 447
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
V LLGAC+IHG V+L +LL+++ G YV+LSNI+A W+ +RK M
Sbjct: 448 VWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMD 507
Query: 297 EAGIRKIPAYSLIEA 311
++G+RK SLIE
Sbjct: 508 DSGVRKEAGCSLIEG 522
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 11/245 (4%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G M A LF ++ + D W ++I G ++ AI ++ M VRP++ T+
Sbjct: 60 SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGC--VRPDKFTFP 117
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C L + +G VHG + R + F+ LI + G L A +F
Sbjct: 118 FVLKACTRLC---WVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGS 174
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV W+A+ + A A +FDEM K L +++ ++T A+ +E
Sbjct: 175 AKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDL----VSWNVMITGYAKRGEMESAR 230
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+LF + K +VV V L G E E MRS+ PD + +LL AC
Sbjct: 231 KLFDE-VPKRDVVTWNAMIAGYV-LCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTD 288
Query: 248 HGAVD 252
G +D
Sbjct: 289 LGDLD 293
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G M+ A +FE + KRD+VSW S+I ++ AI +F+ M V+ +
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM--GVSGIC 539
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L +E GK +HG+++++ + V+ + LID+Y K G L+ A
Sbjct: 540 YDCVSISAALSACANLPSES---FGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAA 596
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACAR 179
+ VFK+M K++ +WN++I++ ++ + K++L +F EM EK G+R ++ITF+ ++++C
Sbjct: 597 MNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCH 656
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ G+ F SM + + P EHY CVVDL GRAG L+EA E ++SMPF PDA V G
Sbjct: 657 VGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWG 716
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V+L +L++L P + G YV++SN HA W T +R M E
Sbjct: 717 TLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKERE 776
Query: 300 IRKIPAYSLIE 310
++KIP YS IE
Sbjct: 777 VQKIPGYSWIE 787
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 133/261 (50%), Gaps = 11/261 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + A +F DVV +T++I+G++ NG + +++ +F+ ++ +
Sbjct: 381 LIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVK--IS 438
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS+L L+ L LG+++HG+I++ +G A+ID+Y K G + A
Sbjct: 439 PNEITLVSILPVIGILL---ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLA 495
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + +D+ +WN+MI+ A + A+ +F +M G+ + ++ A L+ACA
Sbjct: 496 YEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANL 555
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G + H + K + + ++D+ + G L A ++M E + +
Sbjct: 556 PSESFG-KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNS 613
Query: 241 LLGACKIHGAV--DLC--HEV 257
++ AC HG + LC HE+
Sbjct: 614 IIAACGNHGKLKDSLCLFHEM 634
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 10/226 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G D A LF M + D V+W +I+G+V++G E++ F M+ + V
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG--VL 337
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ S+L S + N L KQ+H YI+R+ I L +F+ +ALID Y K + A
Sbjct: 338 PDAITFSSLLPSVSKFEN---LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMA 394
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F DV + AMIS N ++L MF + + + NEIT V++L
Sbjct: 395 QNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGIL 454
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGC-VVDLLGRAGLLSEAKE 224
++LG EL ++ K F+ + GC V+D+ + G ++ A E
Sbjct: 455 LALKLGRELHGFIIKKGFDN---RCNIGCAVIDMYAKCGRMNLAYE 497
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 9/186 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y++ G +D LF+ +L++D V W ++NG+ + G I F M ++ +
Sbjct: 179 LIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM--RMDQIS 236
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+ VLS CA L++ LG Q+HG ++ + + + +L+ +Y K G +
Sbjct: 237 PNAVTFDCVLSVCASKLLID-----LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F+ M D TWN MIS + +E+L F EM G+ + ITF ++L + +
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Query: 179 RAQLVE 184
+ + +E
Sbjct: 352 KFENLE 357
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 120/273 (43%), Gaps = 42/273 (15%)
Query: 20 NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79
++ + + W SII+ FVRNG +A+ + M+ V P+ +T+ ++ +C L N
Sbjct: 97 DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKML--CFGVSPDVSTFPCLVKACVALKNF 154
Query: 80 GGL-YLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
G+ +L V + NE F+ ++LI Y + G ++ ++F ++ KD WN
Sbjct: 155 KGIDFLSDTVSSLGMDCNE-----FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNV 209
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-------- 189
M++ A + F M+ + N +TF VL+ CA L++LG++L
Sbjct: 210 MLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSG 269
Query: 190 -------------FHSMLGKFE----VVPIMEH-----YGCVVDLLGRAGLLSEAKEFMR 227
+S G+F+ + +M + C++ ++GL+ E+ F
Sbjct: 270 VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFY 329
Query: 228 SMPFE---PDASVLGALLGACKIHGAVDLCHEV 257
M PDA +LL + ++ C ++
Sbjct: 330 EMISSGVLPDAITFSSLLPSVSKFENLEYCKQI 362
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLS----SCAGLVNEGGLYLGKQVHGYILRNEI 97
F AI +K + N R E T LS +C+ N L GKQVH +++ N I
Sbjct: 10 FAPAIAPYKKSLPLRNSSRFLEETIPRRLSLLLQACS---NPNLLRQGKQVHAFLIVNSI 66
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMF 155
+ ++ +Y G ++F + ++ + WN++ISS N +AL +
Sbjct: 67 SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFY 126
Query: 156 DEMKEKGLRANEITFVAVLTAC 177
+M G+ + TF ++ AC
Sbjct: 127 FKMLCFGVSPDVSTFPCLVKAC 148
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + + +F + +RD +SW SII G V+NG F E + F+ M+ + ++
Sbjct: 280 LIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML--MAKIK 337
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P ++ S++ +CA L L+LGKQ+HGYI RN ++F+ ++L+D+Y K G + A
Sbjct: 338 PKSYSFSSIMPACAHLTT---LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 394
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M ++D+ +W AMI A + + +A+ +F++M+ +G++ N + F+AVLTAC+
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHG 454
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ + F+SM F + P +EHY V DLLGRAG L EA +F+ M P S+
Sbjct: 455 GLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWAT 514
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +D+ +V R+LE+ P + G Y++L+NI++ RW A R +M GI
Sbjct: 515 LLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 574
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 575 RKTPACSWIE 584
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 12/279 (4%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
DS +FE M ++D+VSW +II G RNG + E + + + M G NL +P+ T SVL
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM-GGANL-KPDSFTLSSVLP 247
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
A V+ + GK++HG +R + +++ ++LID+Y K + + RVF + +D
Sbjct: 248 LIAENVD---ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERD 304
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
+WN++I+ N E L F +M ++ +F +++ ACA + LG +L H
Sbjct: 305 GISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL-H 363
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251
+ + + +VD+ + G + AK+ M S ++G C +HG
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG-CALHGQA 422
Query: 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL--ERW 285
E+ ++ ++P H VL+ H GL E W
Sbjct: 423 PDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAW 461
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 37/211 (17%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ ++ LF + ++W S+I + +G +++ F M+ + + P+ + SVL
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASG--LYPDHNVFPSVL 113
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE------------ 118
SCA L++ L LG+ +HGYI+R + ++ G AL+++Y K+ LE
Sbjct: 114 KSCALLMD---LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170
Query: 119 --------RAIR------------VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
R++R +F+ M KD+ +WN +I+ A N +E L M EM
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLEL 189
L+ + T +VL A + G E+
Sbjct: 231 GGANLKPDSFTLSSVLPLIAENVDISRGKEI 261
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 189/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD++ A+ LF M R+V SWT++I+G+ +NG + +A+ +F MM +R
Sbjct: 154 MIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFL-MMEEETEMR 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA L G L +G+++ Y N ++++ AL+++Y + G +++A
Sbjct: 213 PNEVTLASVLPACANL---GALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKA 269
Query: 121 IRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+ + +++C+WN+MI LA + R EA+ +F +M +G +++TFV VL AC
Sbjct: 270 WGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G F SM F + P +EHYGC+VDLLGRAG L EA + + MP EPD+ V G
Sbjct: 330 GGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V+L + L EL+P + G YV+LSNI+A RW+ LRK M
Sbjct: 390 TLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGK 449
Query: 300 IRKIPAYSLIE 310
I K YS IE
Sbjct: 450 ITKAAGYSFIE 460
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 125/280 (44%), Gaps = 42/280 (15%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+ + K V + +I + +G + ++ M + PNE ++ + S+CA L
Sbjct: 38 LFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMC--LQGCSPNEHSFTFLFSACASL 95
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G+ +H + +++ VF TAL+D+Y K+G L A + F M ++DV TWN
Sbjct: 96 SSHQQ---GRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWN 152
Query: 137 -------------------------------AMISSLASNSREKEALVMFDEMKEKG-LR 164
AMIS A N + +AL MF M+E+ +R
Sbjct: 153 SMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMR 212
Query: 165 ANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
NE+T +VL ACA +E+G +E++ G F+ + + ++++ R G + +A
Sbjct: 213 PNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSN---ALLEMYARCGRIDKA 269
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262
+ + +++ +HG D E+ ++L
Sbjct: 270 WGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKML 309
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY + D ++A + M K+D+V+W ++I+ + +NG EA+ VF + N ++
Sbjct: 306 MLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN-IK 364
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T VS LS+CA + G L LG+ +H YI +N I ++ ++ +ALI +Y K G LE+A
Sbjct: 365 LNQITLVSTLSACAQV---GALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ +DV W+AMI LA + EA+ MF +M+E ++ N +TF V AC+
Sbjct: 422 REVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 481
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ LF+ M + +VP +HY C+VD+LGR+G L +A +F+ +MP P SV GA
Sbjct: 482 GLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 541
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIH + L RLLEL+P++ G +V+LSNI+A +W+ ++LRK M G+
Sbjct: 542 LLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGL 601
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 602 KKEPGCSSIE 611
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 152/293 (51%), Gaps = 43/293 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+DSA +F + ++DVVSW S+INGFV+ G +A+ +FK M V+
Sbjct: 174 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED--VK 231
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V VLS+CA + + L G++V YI N + +++ + A++D+Y K G +E A
Sbjct: 232 ASHVTMVGVLSACAKIRD---LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 288
Query: 121 IRVF-------------------------------KSMVIKDVCTWNAMISSLASNSREK 149
R+F +M KD+ WNA+IS+ N +
Sbjct: 289 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPN 348
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EAL++F E++ +K ++ N+IT V+ L+ACA+ +ELG HS + K +
Sbjct: 349 EALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSA 407
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
++ + + G L +A+E S+ + D V A++G +HG AVD+ +++
Sbjct: 408 LIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHGCGSEAVDMFYKM 459
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 129/259 (49%), Gaps = 9/259 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
++ A +F+ + + + +W ++I + +I F +M+ + + PN+ T+
Sbjct: 79 ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
++ + A + L LG+ +HG +++ + VF+ +LI Y G L+ A +VF ++
Sbjct: 139 LIKAAAEV---SSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 195
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KDV +WN+MI+ +AL +F +M+ + ++A+ +T V VL+ACA+ + +E G
Sbjct: 196 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ S + + V + ++D+ + G + +AK +M + + + L G
Sbjct: 256 VC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY---- 310
Query: 249 GAVDLCHEVGRRLLELQPK 267
A+ +E R +L PK
Sbjct: 311 -AISEDYEAAREVLNAMPK 328
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 194/312 (62%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
++D Y K G++ + +F+ M +RDV+SW SII + +NG E++ +F M+ G +N
Sbjct: 302 LMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 361
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N T +VL +CA + G LGK +H +++ + +VF+GT++ID+Y K G +E
Sbjct: 362 ---NAVTLSAVLLACA---HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 415
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A + F M K+V +W+AM++ + KEAL +F EM G++ N ITFV+VL AC+
Sbjct: 416 MARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+E G F +M +F+V P +EHYGC+VDLLGRAG L EA + ++ M PD V
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 535
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC++H VDL R+L EL PK+CG YV+LSNI+A RW +R M +
Sbjct: 536 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNS 595
Query: 299 GIRKIPAYSLIE 310
G+ K P +SL++
Sbjct: 596 GLVKPPGFSLVD 607
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 152/303 (50%), Gaps = 27/303 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------- 53
++D Y K G++ A LF+ + R++VSWTS+I G+V+N A+ +FK +
Sbjct: 193 LVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSE 252
Query: 54 --GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
G V V P VSVLS+C+ V+E + G VHG++++ + + L+D Y
Sbjct: 253 GDGEV-CVDP--IAMVSVLSACS-RVSEKSITEG--VHGFLIKRGFEGDLGVENTLMDAY 306
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITF 170
K G L + RVF M +DV +WN++I+ A N E++ +F M + G + N +T
Sbjct: 307 AKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 366
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
AVL ACA + LG + H + K + + ++D+ + G + A++ M
Sbjct: 367 SAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 425
Query: 231 FEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--E 283
E + A++ +HG A+++ +E+ + ++P + VL+ HAGL E
Sbjct: 426 -EKNVKSWSAMVAGYGMHGHAKEALEVFYEMN--MAGVKPNYITFVSVLAACSHAGLLEE 482
Query: 284 RWN 286
W+
Sbjct: 483 GWH 485
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K +V SW S+I R+G EA+ F +M ++L +PN +T+ + SC+ L++ L
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMR-KLSL-KPNRSTFPCAIKSCSALLD---L 168
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
+ G+Q H L +F+ +AL+D+Y K G L A +F + +++ +W +MI+
Sbjct: 169 HSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGY 228
Query: 143 ASNSREKEALVMFDE--MKEKGLRA------NEITFVAVLTACAR 179
N AL++F E ++E G + I V+VL+AC+R
Sbjct: 229 VQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSR 273
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K G D A +FE M +DV+SWTS++ G V NG + EA+ +F M MG
Sbjct: 8 LVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG---- 63
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P++ +VLS+CA L L GKQVH L++ + S+ + +L+ +Y K GC+E
Sbjct: 64 IHPDQIVIAAVLSACAELTV---LEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM I+DV TW A+I A N R +E+L +++M G++ + ITF+ +L AC+
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LVE G F SM + + P EHY C++DLLGR+G L EAKE + M +PDA+V
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 240
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALL AC++HG V+L L EL+PK+ YV+LSN+++ +W A R+ M
Sbjct: 241 KALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 301 GVSKEPGCSWIE 312
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+ AL+D+Y K G + A VF+ M KDV +W ++++ N +EAL +F EM+
Sbjct: 3 LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
G+ ++I AVL+ACA ++E G ++ H+ K + + +V + + G + +
Sbjct: 63 GIHPDQIVIAAVLSACAELTVLEFGKQV-HANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121
Query: 222 AKEFMRSMPFE 232
A + SM +
Sbjct: 122 ANKVFDSMEIQ 132
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 136/315 (43%), Positives = 199/315 (63%), Gaps = 12/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G+M+SA LF+ + KRDVV+W ++I G+V G +A+ +F+ M L
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-- 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI----LRNEIVLSVFMGTALIDLYGKVGC 116
P+E T +S+LS+C L G L G+++H I R+ LSV +G ALID+Y K G
Sbjct: 239 PDEVTMLSLLSACTDL---GDLDAGQRIHCCISEMGFRD---LSVLLGNALIDMYAKCGS 292
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ RA+ VF+ M KDV TWN+++ LA + ++++ +F EM++ +R +EITFV VL A
Sbjct: 293 IVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVA 352
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A VE G + F M ++ + P + HYGC+VDLLGRAGLL+EA +F+ +M EP+A
Sbjct: 353 CSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAI 412
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
V LLGAC+IHG V+L +LL+++ G YV+LSNI+A W+ +RK M
Sbjct: 413 VWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMD 472
Query: 297 EAGIRKIPAYSLIEA 311
++G+RK SLIE
Sbjct: 473 DSGVRKEAGCSLIEG 487
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 11/245 (4%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G M A LF ++ + D W ++I G ++ AI ++ M VRP++ T+
Sbjct: 25 SGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGC--VRPDKFTFP 82
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C L + +G VHG + R + F+ LI + G L A +F
Sbjct: 83 FVLKACTRLC---WVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGS 139
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV W+A+ + A A +FDEM K L +++ ++T A+ +E
Sbjct: 140 AKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDL----VSWNVMITGYAKRGEMESAR 195
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+LF + K +VV V L G E E MRS+ PD + +LL AC
Sbjct: 196 KLFDE-VPKRDVVTWNAMIAGYV-LCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTD 253
Query: 248 HGAVD 252
G +D
Sbjct: 254 LGDLD 258
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 189/317 (59%), Gaps = 12/317 (3%)
Query: 1 MIDGYVKNGDMDSAILLF-------ENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
+I GY+ G AI +F + ML++D+VSW+S+I G+ NG EA+ +F M+
Sbjct: 180 IISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKML 239
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
RP+ V VL +CA L G L LG + RNE + + +GTALID+Y K
Sbjct: 240 NEG--FRPDCYAMVGVLCACARL---GALELGNWASNLMDRNEFLGNPVLGTALIDMYAK 294
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G ++ A VF+ M KD+ WNA IS LA + K A +F +M++ G+ + TFV +
Sbjct: 295 CGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGL 354
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L AC A LV+ G + F+SM F + P +EHYGC+VDLLGRAG L EA + ++SMP E
Sbjct: 355 LCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEA 414
Query: 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
+A V GALLG C++H L V ++L+ L+P + G YV+LSNI++ +W A +R
Sbjct: 415 NAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRS 474
Query: 294 AMVEAGIRKIPAYSLIE 310
M E GI+K+P YS IE
Sbjct: 475 IMSERGIKKVPGYSWIE 491
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 49/283 (17%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G+ + + +F + ++ + ++I+G V N F E+I ++ +M + P+ T+
Sbjct: 56 GNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEG--LSPDSFTFPF 113
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE---------- 118
+L +CA L++ LG ++HG +++ F+ T+L+ LYGK G ++
Sbjct: 114 LLKACARLLDSK---LGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP 170
Query: 119 ----------------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
RA VF M+ KD+ +W++MI ASN KE
Sbjct: 171 EKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKE 230
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV--PIMEHYGC 208
AL +F +M +G R + V VL ACAR +ELG +++ + E + P++
Sbjct: 231 ALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG-NWASNLMDRNEFLGNPVLG--TA 287
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251
++D+ + G + A E R M + D V A + + G V
Sbjct: 288 LIDMYAKCGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSGHV 329
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK +D A +F+ +L RDV+SWT +I+G V+ +A+ VF M + V+
Sbjct: 252 VLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEM--QKSRVK 309
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ +VLS+C L G L G+ VH YI R I V +GT+L+D+Y K GCLE +
Sbjct: 310 PDKVVLSTVLSACTSL---GALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETS 366
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +K++ +WNA+I+ A + +EAL FD M GL NE++F+ VL AC +
Sbjct: 367 LSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHS 426
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+LF SM +++ P EHYG VVDLLGRAGL+ EA ++MP P GA
Sbjct: 427 GLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGA 486
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H VD ++ R + EL+ G Y +LSNI+A RW +R M E G+
Sbjct: 487 LLSACQAHRQVDFSQQILRHVHELESSESGVYALLSNIYAVNHRWADVKRVRGLMSEKGL 546
Query: 301 RKIPAYSLIE 310
+K P S+IE
Sbjct: 547 QKEPGSSVIE 556
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G+ A +F+ M RDVVSWT++++ FVR G F EA+ ++G +++V PNE T
Sbjct: 162 GECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALV----LVGQMDVV-PNEGTLAC 216
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +C L G GK VHG+ LR E L + +G A++D+Y K L+ A RVF ++
Sbjct: 217 VLVACGRL---GAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLL 273
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++DV +W MIS L +AL +F+EM++ ++ +++ VL+AC +E G
Sbjct: 274 VRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESG-R 332
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
H + + + + +VD+ + G L + R MP + + S AL+ +H
Sbjct: 333 WVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLK-NLSSWNALINGFALH 391
Query: 249 G 249
G
Sbjct: 392 G 392
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEATYVSVLSSCAGLVNE 79
L+ + ++I+ +G A F ++ G RP+ T + L +CA L
Sbjct: 64 LRASAHPFNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAG 123
Query: 80 GGLYL---GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G G+QVH + + + + AL+ LYG G A RVF M +DV +W
Sbjct: 124 GDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWT 183
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A++S+ R EALV+ +M + NE T VL AC R
Sbjct: 184 ALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGR 223
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY + D ++A + +M ++D+V+W ++I+ + +NG EA+ VF + N+ +
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM-K 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T VS LS+CA + G L LG+ +H YI ++ I ++ + +ALI +Y K G LE++
Sbjct: 363 LNQITLVSTLSACAQV---GALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ +DV W+AMI LA + EA+ MF +M+E ++ N +TF V AC+
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ LFH M + +VP +HY C+VD+LGR+G L +A +F+ +MP P SV GA
Sbjct: 480 GLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 539
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIH ++L RLLEL+P++ G +V+LSNI+A L +W ++LRK M G+
Sbjct: 540 LLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 600 KKEPGCSSIE 609
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 43/293 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+DSA +F + ++DVVSW S+INGFV+ G +A+ +FK M V+
Sbjct: 172 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED--VK 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V VLS+CA + N L G+QV YI N + +++ + A++D+Y K G +E A
Sbjct: 230 ASHVTMVGVLSACAKIRN---LEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286
Query: 121 IRVF-------------------------------KSMVIKDVCTWNAMISSLASNSREK 149
R+F SM KD+ WNA+IS+ N +
Sbjct: 287 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN 346
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EAL++F E++ +K ++ N+IT V+ L+ACA+ +ELG HS + K +
Sbjct: 347 EALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSA 405
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
++ + + G L +++E S+ + D V A++G +HG AVD+ +++
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 128/259 (49%), Gaps = 10/259 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
++ A +F+ + K + +W ++I + +I F +M+ PN+ T+
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY-PNKYTFPF 136
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
++ + A + L LG+ +HG +++ + VF+ +LI Y G L+ A +VF ++
Sbjct: 137 LIKAAAEV---SSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KDV +WN+MI+ +AL +F +M+ + ++A+ +T V VL+ACA+ + +E G +
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ S + + V + ++D+ + G + +AK +M + + + L G
Sbjct: 254 VC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY---- 308
Query: 249 GAVDLCHEVGRRLLELQPK 267
A+ +E R +L P+
Sbjct: 309 -AISEDYEAAREVLNSMPQ 326
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G + G +D A LF M +RD VSWT++I+G+V+ F EA+ +F+ M + V
Sbjct: 217 LLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREM--QCSNVS 274
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSV+++CA L G L +G+ V Y+ R I + F+G ALID+Y K G +ERA
Sbjct: 275 ADEFTMVSVITACAQL---GALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERA 331
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M +D TW A+I LA N +EA+ MF M +E+TF+ VLTAC A
Sbjct: 332 LDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHA 391
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F SM + + P + HYGC++DL GRAG ++EA + + MP P++++ G
Sbjct: 392 GLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGT 451
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG ++ V RLL++ P++ Y +LSNI+A RW LR ++E GI
Sbjct: 452 LLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGI 511
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 512 KKEPGCSLIE 521
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 23 KRDV-VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81
+RD V W ++I+G R FGEA C F +M P TYVSVLS+C G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAG--AAPTPVTYVSVLSACGK--GTGD 160
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI------------ 129
+ LG QVHG ++ + ++ + + AL+D+Y + +E A ++F M +
Sbjct: 161 VLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSG 220
Query: 130 -------------------KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF 170
+D +W AMI +R +EAL MF EM+ + A+E T
Sbjct: 221 LTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTM 280
Query: 171 VAVLTACARAQLVELG 186
V+V+TACA+ +E+G
Sbjct: 281 VSVITACAQLGALEMG 296
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G++ +A LF+ M +RDV+SWT++I + + G F EA+ +FK MM + V+
Sbjct: 250 MIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESK--VK 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SVLS+CA + G L +G+ H YI + ++ +++G ALID+Y K G +E+A
Sbjct: 308 PDEITVASVLSACA---HTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKA 364
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M KD +W ++IS LA N AL F M + ++ + FV +L ACA A
Sbjct: 365 LEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHA 424
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE F SM + + P M+HYGCVVDLL R+G L A EF++ MP PD +
Sbjct: 425 GLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRI 484
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A ++HG + L ++LLEL P + G YV+ SN +AG RW A +R+ M ++ +
Sbjct: 485 LLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNV 544
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 545 QKPSGSSCIE 554
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 43/317 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y G + A +F+ M +RD+VSW S++ G+ + F E + VF+ M V V+
Sbjct: 118 LINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAM--RVAGVK 175
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG-------- 112
+ T V V+ +C L G + + YI N + + V++G LID+YG
Sbjct: 176 GDAVTMVKVVLACTSLGEWG---VADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLA 232
Query: 113 -----------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
K G L A +F +M +DV +W MI+S + +
Sbjct: 233 RGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFT 292
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F EM E ++ +EIT +VL+ACA +++G E H + K++V + +
Sbjct: 293 EALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVG-EAAHDYIQKYDVKADIYVGNAL 351
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPK 267
+D+ + G++ +A E + M + D+ +++ ++G D + R+L +QP
Sbjct: 352 IDMYCKCGVVEKALEVFKEMR-KKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPS 410
Query: 268 HCGRYV--VLSNIHAGL 282
H G +V +L+ HAGL
Sbjct: 411 H-GAFVGILLACAHAGL 426
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 12/233 (5%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+ + + + W +I G+ + EAI ++ N+M L+ N TY+ + +CA +
Sbjct: 33 LFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMY-NLMYRQGLL-GNNLTYLFLFKACARV 90
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ + G +H +L+ +++ ALI++YG G L A +VF M +D+ +WN
Sbjct: 91 PD---VSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWN 147
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+++ R +E L +F+ M+ G++ + +T V V+ AC L E G+ +M+
Sbjct: 148 SLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLAC--TSLGEWGVA--DAMVDY 203
Query: 197 FEV--VPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
E V I + G ++D+ GR GL+ A+ M + S ++G K
Sbjct: 204 IEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGK 256
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D + +F M +D V+W S+I+ F +NG EA+ +F+ M + ++
Sbjct: 485 LMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMC--MEGIK 542
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T S LS+CA L +Y GK++HG I++ I +F +ALID+Y K G +E A
Sbjct: 543 YNNVTISSALSACASL---PAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELA 599
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M K+ +WN++IS+ ++ KE++ M+E+G + + +TF+A+++ACA A
Sbjct: 600 LRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHA 659
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+LF M ++ + P MEH+ C+VDL R+G L +A +F+ MPF+PDA + GA
Sbjct: 660 GLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGA 719
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+L + L +L P + G YV++SNI+A RW+ + +R+ M + I
Sbjct: 720 LLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKI 779
Query: 301 RKIPAYSLIE 310
KIP YS ++
Sbjct: 780 LKIPGYSWVD 789
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 152/285 (53%), Gaps = 10/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D+ +A L++ DVV +++I+G+V NG +A+ +F+ ++ ++
Sbjct: 384 LVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQC--IK 441
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVL +CA + L LG+++HGY+LRN ++ +AL+D+Y K G L+ +
Sbjct: 442 PNAVTVASVLPACASI---SALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLS 498
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +KD TWN+MISS + N +EAL +F +M +G++ N +T + L+ACA
Sbjct: 499 HYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASL 558
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H ++ K + + ++D+ + G + A MP + + S +
Sbjct: 559 PAIYYGKEI-HGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVS-WNS 616
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGL 282
++ A HG V R+ E +P H ++S HAGL
Sbjct: 617 IISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGL 661
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K +D A LFE + + D+V+W +I+G V+NG EA+ +F +M+ + R
Sbjct: 283 LLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG--AR 340
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+L + L + GL GK+VHGYI+RN + + F+ +AL+D+Y K + A
Sbjct: 341 PDSVTLVSLLPA---LTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTA 397
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ + DV + +IS N ++AL MF + E+ ++ N +T +VL ACA
Sbjct: 398 RNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASI 457
Query: 181 QLVELGLEL 189
+ LG E+
Sbjct: 458 SALPLGQEI 466
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A F+ M RD V W +++G+++ G G A+ +F+NM V+
Sbjct: 182 LIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM--RVSGCE 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT LS CA E L G Q+H ++ + V + L+ +Y K CL+ A
Sbjct: 240 PNFATLACFLSVCAA---EADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
R+F+ + D+ TWN MIS N EAL +F +M G R + +T V++L A
Sbjct: 297 WRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 5/226 (2%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I GF G A+ + M + P+ T V+ SCA L G + LG+
Sbjct: 105 LPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL---GAVSLGR 161
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + V++G+ALI +Y G L A F M +D WN M+
Sbjct: 162 LVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAG 221
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F M+ G N T L+ CA + G++L HS+ K + +
Sbjct: 222 DVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQL-HSLAVKCGLEQEVAVA 280
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
++ + + L +A +P + D ++ C +G +D
Sbjct: 281 NTLLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGCVQNGLLD 325
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 194/312 (62%), Gaps = 5/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y G +D A+ LF+ M +RD+VSW+++I+ V+N EA+ VF+ M +R
Sbjct: 118 LINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRDIR 177
Query: 61 P--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ A +SV+S+ + L G + LG VH +I+R IV++V +GTALI++Y + G ++
Sbjct: 178 NWLDRAIMLSVISAVSSL---GVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLID 234
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
R+++VF M ++V TW A+I+ LA + R +EAL +F EMKE GL+ + F+ VL AC+
Sbjct: 235 RSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACS 294
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G +F SM +F + P++EHYGC+VDLLGRAGL+ EA +F+ MP +P++ +
Sbjct: 295 HGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPNSVIW 354
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
LLGAC H + L + R++EL P H G YV+LSN + + W LR +M +
Sbjct: 355 RTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNSMKQN 414
Query: 299 GIRKIPAYSLIE 310
I K P S +
Sbjct: 415 RIVKEPGLSFVH 426
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
++F+ ALI+ YG G L+ A+++F M +D+ +W+ +IS L N+ EAL +F +M+
Sbjct: 111 NIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQ 170
Query: 160 --EKGLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
+ +R + ++V++A + ++ELG+ + HS + + +V + ++++ R
Sbjct: 171 MGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWV-HSFIVRMGIVMTVPLGTALINMYSR 229
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
GL+ + + MP E + AL+ +HG
Sbjct: 230 CGLIDRSVKVFDEMP-ERNVVTWTALINGLAVHG 262
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 198/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LF+ + K+DV+SW ++I G + EA+ +F+ M+ +
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE--S 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +SVL +CA L G + +G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 296 PNDVTMLSVLPACAHL---GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIE 352
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ + + +WNAMI A + + A +F +M++ G+ ++ITFV +L+AC+
Sbjct: 353 AAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACS 412
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG GL EAKE +R+MP EPD +
Sbjct: 413 HSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIW 472
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+H V+L + L++++P++ G YV+LSNI+A RW++ +R + +
Sbjct: 473 CSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDK 532
Query: 299 GIRKIPAYSLIE 310
GI+K P S IE
Sbjct: 533 GIKKAPGCSSIE 544
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 9/254 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G +++A LF+ + +DVVSW ++I+G+V F EA+ ++K+MM V+
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN--VK 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+CA G + LG+Q+H +I + ++ + LIDLY K G +E A
Sbjct: 195 PDESTMVTVVSACA---QSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T ++VL ACA
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G H + K V ++D+ + G + AK+ SM S
Sbjct: 312 GAIDIG-RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSW 369
Query: 239 GALLGACKIHGAVD 252
A++ +HG +
Sbjct: 370 NAMIFGFAMHGKAN 383
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 39/241 (16%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEATYVSVLSS 72
AI +FE + + +++ W ++ G N +++ K + ++L + PN ++ +L S
Sbjct: 18 AISIFETIQEPNLLIWNTMFRGHALNS---DSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV--------- 123
CA L G+Q+HG++L+ L +++ T+LI +Y + G LE A +V
Sbjct: 75 CA---KSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131
Query: 124 ----------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
F + +KDV +WNAMIS KEAL ++ +M +
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
++ +E T V V++ACA++ +ELG +L HS + ++ ++DL + G +
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQL-HSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250
Query: 222 A 222
A
Sbjct: 251 A 251
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +D+A +F+ M +RD++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM--QISGVK 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L G VH Y+L + +V + +LIDLY + GC+E A
Sbjct: 204 PDYVAIIAALNACTNL---GALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFA 260
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M + V +WN++I A+N E+LV F +M+EKG + + +TF LTAC+
Sbjct: 261 RQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHV 320
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 321 GLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS 380
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC HG + L + + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 381 LLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 440
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 441 LKKQPGFSSIE 451
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VSWTS IN RNG EA F +M + V PN T++++LS C G G LG
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDM--TLAGVEPNHITFIALLSGC-GDFTSGSEALG 92
Query: 86 KQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+HGY + RN V +GTA+I +Y K G ++A VF M K+ TWN MI
Sbjct: 93 DLLHGYACKLGLDRNH----VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+ + A MFD+M E+ L I++ A++ + E L F M
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDL----ISWTAMINGFVKKGYQEEALLWFREM 197
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 192/311 (61%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + GD++SA +FE M +RD+VSW ++I+G V N EA+C+F+ MM +
Sbjct: 114 MVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV-- 171
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVLS+C G G L GK VH ++ + + F+GTAL+D+Y K G +E A
Sbjct: 172 PNRGTVVSVLSACTG---AGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
+ VF + ++ CTWNAMI+ LA N +AL MF +M+ G A +E+TFV VL AC+
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V+ G E F+++ K+ V I+EHY C+VDLL R+G L EA + + MP +PD V
Sbjct: 289 AGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWR 348
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C++H V + V + E++ G +V+LSN++A + RWN D+R+ M G
Sbjct: 349 ALLGGCRLHKNVKMAENV---ISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKG 405
Query: 300 IRKIPAYSLIE 310
I KIP S +E
Sbjct: 406 IEKIPGCSSVE 416
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 44/186 (23%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I GY G + A +F+ M +RD VS+ S+I+G+ +G G A +F+ ++
Sbjct: 52 FIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLA------ 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S+++ + + G +E A
Sbjct: 106 PTPVTWTSMVAG--------------------------------------FCRAGDVESA 127
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M +D+ +WNAMIS N EAL +F M E+G N T V+VL+AC A
Sbjct: 128 RRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGA 187
Query: 181 QLVELG 186
+E G
Sbjct: 188 GALETG 193
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 6/197 (3%)
Query: 56 VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
+ L R N+ T++S+L S A + +H + +L A I Y G
Sbjct: 1 MQLSRLNQQTFLSLLKSAASASPSAYSHHLPSLHAVCTKLGFLLCTRTNNAFIQGYCSAG 60
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A RVF M +D ++N+MI A + A +F E+ L +T+ +++
Sbjct: 61 RVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLF----ERVLAPTPVTWTSMVA 116
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
RA VE +F M + V GCV + L L +M F P+
Sbjct: 117 GFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALC--LFRWMMEEGFVPNR 174
Query: 236 SVLGALLGACKIHGAVD 252
+ ++L AC GA++
Sbjct: 175 GTVVSVLSACTGAGALE 191
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 191/315 (60%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K + +A L+F NM++R+VVSW ++I G+ +NG EA+ +F ++ +
Sbjct: 325 MVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIW 382
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL------SVFMGTALIDLYGKV 114
P T+ ++L++CA L + L LG+Q H +IL++ +F+G +LID+Y K
Sbjct: 383 PTHYTFGNLLNACANLAD---LKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKC 439
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G +E VF+ M+ +D +WNAMI A N EAL +F EM G R + +T + VL
Sbjct: 440 GLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVL 499
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC+ A LVE G F SM + +VP+ +HY C+VDLLGRAG L EA +++MP EPD
Sbjct: 500 SACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPD 559
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A V G+LL ACK+HG + L V RLLE+ P + G YV+LSN++A L RW +RK
Sbjct: 560 AVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619
Query: 295 MVEAGIRKIPAYSLI 309
M + G+ K P S I
Sbjct: 620 MRQMGVIKQPGCSWI 634
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
K G +D A+ LF+ M +RD SW ++++GF + F EA+ +M ++ NE +
Sbjct: 96 TKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVL--NEYS 153
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ S LS+CAGL++ L +G Q+HG I ++ L V+MG+AL+D+Y K + A R F
Sbjct: 154 FGSALSACAGLMD---LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFD 210
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++++ +WN++I+ N +AL +F M G+ +EIT +V +ACA +
Sbjct: 211 DMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIRE 270
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
GL++ ++ + + +VD+ + ++EA+ MP S + G
Sbjct: 271 GLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYA 330
Query: 246 K 246
K
Sbjct: 331 K 331
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 54/326 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + SA F++M R++VSW S+I + +NG G+A+ VF MM +
Sbjct: 192 LVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG--IE 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-----RNEIVLSVFMGTALIDLYGKVG 115
P+E T SV S+CA L + G Q+H ++ RN++VL G AL+D+Y K
Sbjct: 250 PDEITLASVASACASL---SAIREGLQIHARVMKHDKYRNDLVL----GNALVDMYAKCR 302
Query: 116 CLERAIRVFKSMVIKDVCT-------------------------------WNAMISSLAS 144
+ A VF M ++DV + WNA+I+
Sbjct: 303 RVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQ 362
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE-----LFHSMLGKFEV 199
N +EA+ +F +K + + TF +L ACA ++LG + L H K
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGE 422
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
+ ++D+ + GL+ + + M E D A++ +G E+ R
Sbjct: 423 DSDIFVGNSLIDMYMKCGLVEDGRLVFERM-LERDNVSWNAMIVGYAQNGYGTEALEIFR 481
Query: 260 RLLEL--QPKHCGRYVVLSNI-HAGL 282
+L +P H VLS HAGL
Sbjct: 482 EMLVSGERPDHVTMIGVLSACSHAGL 507
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 37/211 (17%)
Query: 50 KNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
+ ++G+++ + + + + +L +C V ++ + VH I++ + +F+ L+D
Sbjct: 8 RKVVGDLSFL--DSSPFAKLLDTC---VKSKSVFEARLVHARIIKTQFSSEIFIQNRLVD 62
Query: 110 LYGKVGCLERAIRVF-------------------------------KSMVIKDVCTWNAM 138
+YGK G LE A +VF K M +D C+WNAM
Sbjct: 63 VYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAM 122
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
+S A R +EAL +M + NE +F + L+ACA + +G+++ H ++ K
Sbjct: 123 VSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQI-HGLIAKSR 181
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ +VD+ + +++ A+ M
Sbjct: 182 YSLDVYMGSALVDMYSKCRVVASAQRAFDDM 212
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 200/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+GD+ SA L+F+ M +RDVV+W+S+I+G+V+ G + +A+ +F MM + +
Sbjct: 180 ILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMM-RMGSSK 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSV+ +CA L G L GK VH YIL + L+V + T+LID+Y K G + A
Sbjct: 239 ANEVTMVSVICACAHL---GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDA 295
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF +K D WNA+I LAS+ +E+L +F +M+E + +EITF+ +L AC+
Sbjct: 296 WSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 355
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ F S L + P EHY C+VD+L RAGL+ +A +F+ MP +P S+L
Sbjct: 356 HGGLVKEAWHFFKS-LKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSML 414
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C HG ++L VG++L+ELQP + GRYV L+N++A +++ A +R+AM +
Sbjct: 415 GALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 474
Query: 299 GIRKIPAYSLIE 310
G++KI +S+++
Sbjct: 475 GVKKIAGHSILD 486
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 50/331 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD+D A + W +I GF + ++I V+ M+ L+ P+ TY
Sbjct: 55 SGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQML-RFGLL-PDHMTYP 112
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------- 112
++ S + L N LG +H ++++ + +F+ LI +YG
Sbjct: 113 FLMKSSSRLSNRK---LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 169
Query: 113 ----------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
K G + A VF M +DV TW++MI +AL +FD
Sbjct: 170 PHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFD 229
Query: 157 EMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLG 214
+M G +ANE+T V+V+ ACA + G + +L + I++ ++D+
Sbjct: 230 QMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ--TSLIDMYA 287
Query: 215 RAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHC 269
+ G + +A F R+ E DA + A++G HG ++ L H++ R ++ P
Sbjct: 288 KCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKM--RESKIDPDEI 345
Query: 270 GRYVVLSNI-HAGL--ERWNRATDLRKAMVE 297
+L+ H GL E W+ L+++ E
Sbjct: 346 TFLCLLAACSHGGLVKEAWHFFKSLKESGAE 376
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 192/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M ++ ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--DLKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+ H Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ K GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E++ MP +P+ + LLG
Sbjct: 341 KEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G+RK+
Sbjct: 401 ACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W ++I G+ G A+ +++ M + V P+ TY +L + + + + L
Sbjct: 84 NVFIWNTLIRGYAEIGNSVSAVSLYREMRAS-GFVEPDTHTYPFLLKAVGKMAD---VRL 139
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ +H ++R+ +++ +L+ LY G + A +VF M KD+ WN++I+ A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N + +EAL ++ EM KG++ + T V++L+ACA+ + LG + FH + K + +
Sbjct: 200 NGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG-KRFHVYMIKVGLTRNLH 258
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL R G + EAK M
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLFDEM 283
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ A LF+ M+ ++ VSWTS+I G NG EAI +FKNM L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLL- 321
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E T+V +L +C+ G+V EG Y + Y + I G ++DL + G ++
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRI---EHFG-CMVDLLARAGQVK 377
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
+A M ++ +V W ++ +
Sbjct: 378 KAYEYILKMPMQPNVVIWRTLLGA 401
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K+G++D+A +LF+ M +RD V W +I+G+ +NG EA+ +F+ M+ +
Sbjct: 196 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK--AK 253
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLS+C L G L G+ VH YI N I +V +GTAL+D+Y K G LE A
Sbjct: 254 PNEVTVLSVLSACGQL---GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 310
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV WN+MI A + +EAL +F M GL ITF+ +L+AC +
Sbjct: 311 RLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHS 370
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G ++F+ M ++ + P +EHYGC+V+LLGRAG + +A E +++M EPD + G
Sbjct: 371 GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGT 430
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG + L ++ L++ + G Y++LSNI+A + W+ LR M ++G+
Sbjct: 431 LLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 490
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 491 KKEPGCSSIE 500
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 43/251 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G +D ++ LF V WT+II+G G +A+ + M+ V PN
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQML--TQGVEPNAF 129
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L C + GK +H ++ +++ T L+D+Y + G + A ++F
Sbjct: 130 TFSSILKLCP-------IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 182
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG---------------------- 162
+M K + + AM++ A + A V+FD M+E+
Sbjct: 183 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 242
Query: 163 ---------LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDL 212
+ NE+T ++VL+AC + +E G HS + + + H G +VD+
Sbjct: 243 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYI-ENNGIQFNVHVGTALVDM 300
Query: 213 LGRAGLLSEAK 223
+ G L +A+
Sbjct: 301 YSKCGSLEDAR 311
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 6/166 (3%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H + R+ + + L Y +G L+ ++ +F V W A+I A
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
++AL + +M +G+ N TF ++L C +E G L HS K +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKAL-HSQAVKLGFDSDLYVR 162
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
++D+ R G + A++ +MP E L A+L HG +D
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELD 207
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 188/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G +D A ++F+ M+++++VSW+++I+G+ RN + +AI +F+ M L
Sbjct: 199 LISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLA- 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VSVLS+CA L G L LGK +H +I RN+I + +F+G AL D+Y K GC+ A
Sbjct: 258 PNDVTLVSVLSACAHL---GALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV +W+ +I LA EA F EM E GL N+I+F+ +LTAC A
Sbjct: 315 KGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHA 374
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE F M + + P +EHYGCVVDLL RAG L +A+ + SMP +P+ V GA
Sbjct: 375 GLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGA 434
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+I+ + V R+LEL H G V L+N++A + R + A R M +
Sbjct: 435 LLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKS 494
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 495 MKTPGCSWIE 504
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 37/255 (14%)
Query: 8 NGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+G++ ++L+F + L ++ ++ +++ F ++ + I F N + N P+E T+
Sbjct: 71 HGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTF 130
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
SVL +CAGL + G++VH ++ + ++F+ +L+DLY KVGC A ++F
Sbjct: 131 TSVLKACAGLAQ---VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE 187
Query: 127 MVIKDVCTWN-------------------------------AMISSLASNSREKEALVMF 155
MV++DV +WN MIS A N + +A+ +F
Sbjct: 188 MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELF 247
Query: 156 DEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
+M+ E GL N++T V+VL+ACA ++LG + H + + ++ + + D+
Sbjct: 248 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYA 306
Query: 215 RAGLLSEAKEFMRSM 229
+ G + EAK M
Sbjct: 307 KCGCVLEAKGVFHEM 321
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G A LF M ++++ W +ING V + + EA+ +F M ++ V+
Sbjct: 279 LMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM--QLSGVK 336
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T S+L +C L G L LGK +H YI + +I + V +GTAL+D+Y K G +E A
Sbjct: 337 GDKVTMASLLIACTHL---GALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 393
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M KDV TW A+I LA + +AL +F EM+ ++ + ITFV VL AC+ A
Sbjct: 394 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 453
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G+ F+SM K+ + P +EHYGC+VD+LGRAG ++EA++ +++MP PD VL
Sbjct: 454 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 513
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IHG + + ++L+EL PK+ G YV+LSNI++ ++ W A +R+ MVE I
Sbjct: 514 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI 573
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 574 KKPPGCSAIE 583
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 23/294 (7%)
Query: 3 DGYVKNGDMD---------SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D Y++N M+ SA +F+ M+ + VVSW ++I + + EAI +F+ M
Sbjct: 171 DAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRM- 229
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
+ V+PNE T V+VL++CA L KQVH YI I + +AL+D+Y K
Sbjct: 230 -EIASVKPNEITLVNVLTACA---RSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCK 285
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
GC A +F M K++ WN MI+ +S +EAL +F+EM+ G++ +++T ++
Sbjct: 286 CGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 345
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L AC +ELG + H + K ++ + +VD+ + G + A + MP E
Sbjct: 346 LIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EK 403
Query: 234 DASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
D AL+ + G A++L HE+ ++ E++P VL+ HAGL
Sbjct: 404 DVMTWTALIVGLAMCGQGLKALELFHEM--QMSEVKPDAITFVGVLAACSHAGL 455
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A L+F + + SII G+ +AI ++ MM + + P+ T+
Sbjct: 87 SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMM--LQGLDPDRFTFP 144
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
S+ SC G L GKQ+H + + ++ L+++Y GCL A +VF M
Sbjct: 145 SLFKSC------GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
V K V +W MI + A EA+ +F M+ ++ NEIT V VLTACAR++ +E
Sbjct: 199 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAK 258
Query: 188 EL----------FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ FH++L ++D+ + G A++ MP
Sbjct: 259 QVHKYIDETGIGFHTVLT-----------SALMDVYCKCGCYPLARDLFNKMP 300
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K DM +A LF++M +R+++SWT++I+G+ +AI +F+ M + V
Sbjct: 183 MLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTM--QLQNVV 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T ++VLS+CA L G L LG+ + YI + + +V + ALID+Y K G ++RA
Sbjct: 241 PDEITLLAVLSACAQL---GALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+SM K + TW MI+ LA + +AL MF M+ ++ NEITF+AVL+AC+
Sbjct: 298 LLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHV 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+L F +M ++ + P +EHYGC++DLLGRAG L EA++ ++ MPFEP+A++ G+
Sbjct: 358 GLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGS 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A HG L + L+EL+P + G Y +LSNI+A L RW + +RK M + G+
Sbjct: 418 LLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGV 477
Query: 301 RKIPAYSLIE 310
+KIP S IE
Sbjct: 478 KKIPGGSFIE 487
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V + A++ Y K+ + A +F SM +++ +W A+IS A +R +A+ +F M+
Sbjct: 176 NVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQ 235
Query: 160 EKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
+ + +EIT +AVL+ACA+ +ELG + + + G VP+ + ++D+ ++G
Sbjct: 236 LQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPL---HNALIDMYAKSG 292
Query: 218 LLSEAKEFMRSM 229
+ A SM
Sbjct: 293 NIKRALLIFESM 304
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 185/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +A L+F M +R+VVSW ++I G+ +NG EA+ +F + V
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESVC 383
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P ++ ++L +CA L L+LG Q H ++L++ +F+G +LID+Y K
Sbjct: 384 PTHYSFANILKACADLAE---LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKC 440
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
GC+E VF+ M+ +D +WNAMI A N EAL +F EM E G + + IT + VL
Sbjct: 441 GCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVL 500
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC A VE G F SM F V P+ +HY C+VDLLGRAG L EAK + MP +PD
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPD 560
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + G+LL ACK+H + L V +LLE++P + G YV+LSN++A L +W ++RK+
Sbjct: 561 SVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKS 620
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S I+
Sbjct: 621 MRKEGVTKQPGCSWIK 636
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G K G +D A LF +M +RD +W S+++GF ++ EA+C F MM V
Sbjct: 92 VVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA-MMHKEGFVL 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ SVLS+C+GL + G QVH I ++ + V++G+AL+D+Y K G + A
Sbjct: 151 -NEYSFASVLSACSGL---NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDA 206
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M ++V +WN++I+ N EAL +F M E + +E+T +V++ACA
Sbjct: 207 QRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASL 266
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+++G E+ ++ ++ + VD+ + + EA+ SMP
Sbjct: 267 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 151/326 (46%), Gaps = 54/326 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+++ A +F+ M R+VVSW S+I F +NG EA+ VF+ M+ + V
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES--RVE 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGKVG 115
P+E T SV+S+CA L + +G++VHG + LRN+I+LS A +D+Y K
Sbjct: 251 PDEVTLASVISACASL---SAIKVGQEVHGRVVKNDKLRNDIILS----NAFVDMYAKCS 303
Query: 116 CLERAIRVFKSMVIKDV-------------------------------CTWNAMISSLAS 144
++ A +F SM I++V +WNA+I+
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIM 203
N +EAL +F +K + + +F +L ACA + LG++ H + F+
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423
Query: 204 EHY----GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
E ++D+ + G + E R M E D A++ +G + E+ R
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 260 RLLEL--QPKHCGRYVVLSNI-HAGL 282
+LE +P H VLS HAG
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGF 508
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 39/218 (17%)
Query: 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G L G+QV + + I + +++ K+G L+ A +F+SM +D CTWN+M+
Sbjct: 69 GSLEDGRQVFDKMPQRNI----YTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
S A + R +EAL F M ++G NE +F +VL+AC+ + G+++ HS++ K
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV-HSLIAKSPF 183
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKE-------------------FMRSMP---------- 230
+ + +VD+ + G +++A+ F ++ P
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQM 243
Query: 231 -----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
EPD L +++ AC A+ + EV R+++
Sbjct: 244 MLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K+G++D+A +LF+ M +RD V W +I+G+ +NG EA+ +F+ M+ +
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK--AK 187
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLS+C L G L G+ VH YI N I +V +GTAL+D+Y K G LE A
Sbjct: 188 PNEVTVLSVLSACGQL---GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 244
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV WN+MI A + +EAL +F M GL ITF+ +L+AC +
Sbjct: 245 RLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHS 304
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G ++F+ M ++ + P +EHYGC+V+LLGRAG + +A E +++M EPD + G
Sbjct: 305 GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGT 364
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG + L ++ L++ + G Y++LSNI+A + W+ LR M ++G+
Sbjct: 365 LLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 424
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 425 KKEPGCSSIE 434
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 88 VHGYILRNEIV-----------LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+HG+ LR ++V S+ TA++ Y K G L+ A +F M +D WN
Sbjct: 100 IHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 159
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
MI N EALV+F M + + NE+T ++VL+AC + +E G HS + +
Sbjct: 160 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYI-E 217
Query: 197 FEVVPIMEHYG-CVVDLLGRAGLLSEAK 223
+ H G +VD+ + G L +A+
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDAR 245
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H + R+ + + L Y +G L+ ++ +F V W A+I A
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A +FD M EK L ++ A+LT A+ ++ LF M + V +
Sbjct: 108 DVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----W 158
Query: 207 GCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVD 252
++D + G+ +EA R M +P+ + ++L AC GA++
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 207
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D + +F M ++D V+W S+I+ F +NG EA+ +F+ M + ++
Sbjct: 485 LMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMC--MEGIK 542
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T + LS+CA L +Y GK++HG ++ I +F +ALID+Y K G LE A
Sbjct: 543 YNNITISAALSACASL---PAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELA 599
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M K+ +WN++IS+ ++ KE++ + M+E+G + + +TF+A+++ACA A
Sbjct: 600 LRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHA 659
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G++LF M K+ + P MEH+ C+VDL R+G L +A +F+ MPF+PDA + GA
Sbjct: 660 GLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGA 719
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+L + L +L P + G YV++SNI+A RW+ + +R+ M + I
Sbjct: 720 LLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKI 779
Query: 301 RKIPAYSLIE 310
KIP YS ++
Sbjct: 780 LKIPGYSWVD 789
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D+ A L++ DVV +++I+G+V NG EA+ +F+ ++ ++
Sbjct: 384 LVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQC--IK 441
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVL CA + L LG+Q+HGY+LRN ++ +AL+D+Y K G L+ +
Sbjct: 442 PNAVTIASVLPGCASM---AALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLS 498
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KD TWN+MISS + N + +EAL +F +M +G++ N IT A L+ACA
Sbjct: 499 HYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASL 558
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H + K + + ++D+ + G L A MP + + S +
Sbjct: 559 PAIYYGKEI-HGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVS-WNS 616
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL 282
++ A HG +V L H G + +P H ++S HAGL
Sbjct: 617 IISAYGAHGLVKESVSLLH--GMQEEGYKPDHVTFLALISACAHAGL 661
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K +D A LFE M + D+V+W +I+G V+NG F EA +F +M + RP+
Sbjct: 287 YAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSG--ARPDSI 344
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L + L + GL GK+VHGYI+RN + + VF+ +AL+D+Y K + A ++
Sbjct: 345 TLVSLLPA---LTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLY 401
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ DV + MIS N +EAL MF + E+ ++ N +T +VL CA +
Sbjct: 402 DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALP 461
Query: 185 LGLEL 189
LG ++
Sbjct: 462 LGQQI 466
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G + +A F+ + +RD V W +++G ++ G A+ +F+NM +
Sbjct: 182 LVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNM--RASGCE 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT LS CA + L G Q+H ++ + V + L+ +Y K CL+ A
Sbjct: 240 PNFATLACFLSVCA---TDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
R+F+ M D+ TWN MIS N EA +F +M+ G R + IT V++L A
Sbjct: 297 WRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I GF G A+ + M + P+ T V+ SCA L G + LG+
Sbjct: 105 LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL---GAMSLGR 161
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + V++G+AL+ +Y G L A F + +D WN M+
Sbjct: 162 LVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAG 221
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F M+ G N T L+ CA + G +L HS+ K + P +
Sbjct: 222 DVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQL-HSLAVKCGLEPEVAVA 280
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++ + + L +A MP + D ++ C +G
Sbjct: 281 NTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGCVQNG 322
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ +V +G + A LF+ M +R+ W SI+ G+ G E+ F M+ + +
Sbjct: 652 MVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESD--IE 709
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ T V++++ C+ L L G Q+H I++ V SV + TAL+D+Y K G + +
Sbjct: 710 YDVLTMVTIVNLCSSLP---ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITK 766
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M K++ +WNAMIS + + KEAL++++EM +KG+ NE+TF+A+L+AC+
Sbjct: 767 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 826
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE GL +F SM + + EHY C+VDLLGRAG L +AKEF+ MP EP+ S G
Sbjct: 827 TGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 886
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC++H +D+ +RL EL P++ G YV++SNI+A RW D+R+ M G
Sbjct: 887 ALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKG 946
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 947 VKKDPGVSWIE 957
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 11/305 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DGY + G MD A+ + + VV+W ++I G+V+ + EA +F M+ V
Sbjct: 216 LVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIG--VC 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ S L C L + G GKQVH ++ F+G ALID+Y K E
Sbjct: 274 PDNFTFASALRVCGALRSRDG---GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M ++ TWN++IS+ A +ALV+F M+E G ++N ++L A A
Sbjct: 331 LKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGL 390
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G EL H L + + + +VD+ + G++ EA + RS+ + S
Sbjct: 391 ADIGKGREL-HGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449
Query: 241 LLGAC---KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
L G K A++L H++ + +QP + L + A N+ + ++
Sbjct: 450 LAGYVQEGKAEEALELYHDM-QSEDGIQPDQF-TFTTLLTLCANQRNDNQGRQIHAHLIR 507
Query: 298 AGIRK 302
A I K
Sbjct: 508 ANITK 512
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 123/226 (54%), Gaps = 13/226 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F ++L+R+ VS+ +++ G+V+ G EA+ ++ +M + ++
Sbjct: 418 LVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSE-DGIQ 476
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ ++L+ CA N+ G+Q+H +++R I ++ + T L+ +Y + G L A
Sbjct: 477 PDQFTFTTLLTLCANQRNDNQ---GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 533
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++ +WN+MI N +EAL +F +M+ G++ + + ++L++C
Sbjct: 534 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 593
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG----CVVDLLGRAGLLSEA 222
+ G EL + F V ME G +VD+ + G + A
Sbjct: 594 SDSQKGRELHN-----FIVRNTMEEEGILQVVLVDMYAKCGSMDYA 634
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 47/297 (15%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G ++ A +F M +R+ SW S+I G+ +NG EA+ +FK M +N ++P+
Sbjct: 524 YSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ--LNGIKPDCF 581
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ S+LSSC L + G+++H +I+RN + + L+D+Y K G ++ A +V+
Sbjct: 582 SLSSMLSSCVSLSDSQK---GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVY 638
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---------------KGLRANE-- 167
+ KDV N M+S+ ++ R +A +FD+M++ KGL+
Sbjct: 639 DQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFN 698
Query: 168 --------------ITFVAVLTACARAQLVELGLELFHSMLGKFEVVP---IMEHYGCVV 210
+T V ++ C+ +E G +L HS++ K V ++E +V
Sbjct: 699 HFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQL-HSLIIKKGFVNCSVVLE--TALV 755
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
D+ + G +++A+ +M + S A++ HG C + L E PK
Sbjct: 756 DMYSKCGAITKARTVFDNMNGKNIVS-WNAMISGYSKHG----CSKEALILYEEMPK 807
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 101/193 (52%), Gaps = 9/193 (4%)
Query: 5 YVKNGDMDS---AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
Y ++G +D A LFE M +R++ +W ++I + R + E + ++ M G+ N
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNF--S 173
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
++ T+ SV+ +C + + GG+ +Q+ +++ + ++F+G AL+D Y + G ++ A+
Sbjct: 174 DKFTFPSVIKACIAMEDMGGV---RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAV 230
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+ V TWNA+I+ +EA +FD M + G+ + TF + L C +
Sbjct: 231 TSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALR 290
Query: 182 LVELGLELFHSML 194
+ G ++ HS L
Sbjct: 291 SRDGGKQV-HSKL 302
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER-- 119
N Y S++ C ++ GK +H ++ N ++ T ++ LY + GCL+
Sbjct: 70 NPLPYSSLIQDC---IDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126
Query: 120 -AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A ++F+ M +++ WN MI + A E L ++ M+ G +++ TF +V+ AC
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYVK+GD+ A LF+ M R+VVSWT +I + + EAI VF+ M V +
Sbjct: 144 MIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM--QVEGIE 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +SVLS+C L G + LG+ VH ++LR + + + A+ID+Y K G +++A
Sbjct: 202 PDGVALLSVLSACGDL---GVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K + TW MI+ A + EA+ +F M+++ + N+ITF+AVL+ C+
Sbjct: 259 LEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHV 318
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L +LG F +M+ ++++ P +EHYGC++DLLGRAG L EA+ ++ MPF+ +A++ GA
Sbjct: 319 GLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGA 378
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A + HG +L + L+EL+P + G Y++LSNI+A ERW+ +LR +M + G+
Sbjct: 379 LLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGL 438
Query: 301 RKIPAYSLIE 310
R +P S I+
Sbjct: 439 RNVPGASSID 448
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 39/178 (21%)
Query: 87 QVHGYILRN----------------------EIVLSVFMGTA----------LIDLYGKV 114
Q+H ++R VF TA +ID Y K
Sbjct: 92 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G L RA +F M ++V +W +I + A + +EA+ +F M+ +G+ + + ++VL
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211
Query: 175 TACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+AC +V+LG E H + G + +P+M ++D+ + G + +A E M
Sbjct: 212 SACGDLGVVDLG-EWVHRFVLRRGLCQEIPLM---NAIIDMYVKCGSVKKALEVFEGM 265
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 197/312 (63%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K G+M A FE+M ++DV SW+S+I+G+V+ G + EA+ +F+ M +
Sbjct: 186 MLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGP--K 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSV +CA + G L G+ ++ YI+ N + L++ + T+L+D+Y K G +E A
Sbjct: 244 ANEVTMVSVSCACAHM---GALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEA 300
Query: 121 IRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ +F+ S DV WNA+I LA++ +E+L +F EM+ G+ +E+T++ +L ACA
Sbjct: 301 LLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACA 360
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ F S L K + P EHY C+VD+L RAG L+ A +F+ MP EP AS+L
Sbjct: 361 HGGLVKEAWFFFES-LSKCGMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASML 419
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C H + L VGR+L+EL+P H GRY+ LSN++A +RW+ A +R+AM
Sbjct: 420 GALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERR 479
Query: 299 GIRKIPAYSLIE 310
G++K P +S +E
Sbjct: 480 GVKKSPGFSFVE 491
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 44/280 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEAT 65
+GD++ + +F + + SW +II G+ + +++ +F M+ G V P+ T
Sbjct: 61 SGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLG----VAPDYLT 116
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI----------------- 108
Y ++ + A L+N+ G VH +I++ F+ +LI
Sbjct: 117 YPFLVKASARLLNQE---TGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFD 173
Query: 109 --------------DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM 154
D Y K G + A + F+SM KDV +W+++I EA+ +
Sbjct: 174 SIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAI 233
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLL 213
F++M+ G +ANE+T V+V ACA +E G ++ ++ + +++ +VD+
Sbjct: 234 FEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQ--TSLVDMY 291
Query: 214 GRAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHGAVD 252
+ G + EA F R + D + A++G HG V+
Sbjct: 292 AKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVE 331
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 188/322 (58%), Gaps = 17/322 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ +F N +RDVVSW S+I FV+ GC EA+ +F+ M V+
Sbjct: 177 LIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM--ETQNVK 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V VLS+CA + G+ VH YI RN I S+ + A++D+Y K G +E A
Sbjct: 235 PNGITMVGVLSACA---KKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDA 291
Query: 121 IRVFKSMVIKDVCTWNAMI------------SSLASNSREKEALVMFDEMKEKGLRANEI 168
R+F M KD+ +W M+ LA + K+A+ +F +M+E ++ N +
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAV 351
Query: 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
TF +L AC+ LVE G F+ M + V+P ++HY C+VD+LGRAGLL EA E +
Sbjct: 352 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 411
Query: 229 MPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288
MP P ASV GALLGAC IH V L + +L+EL+P + G YV+LSNI+A +W+R
Sbjct: 412 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 471
Query: 289 TDLRKAMVEAGIRKIPAYSLIE 310
+ LRK M + G++K P S IE
Sbjct: 472 SGLRKLMRDVGLKKEPGCSSIE 493
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 5/237 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ + ++ +W ++I + + +++ +F M+ P++ T+ ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDF-PDKFTFPFLI 143
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + L L+ GK HG +++ + VF+ +LI Y K G L RVF + +
Sbjct: 144 KAASELEE---LFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRR 200
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN+MI++ +EAL +F EM+ + ++ N IT V VL+ACA+ E G
Sbjct: 201 DVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWV 259
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
HS + + + + ++D+ + G + +AK MP + S L+G KI
Sbjct: 260 HSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 190/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+KNG ++ A LF M +D VSW+++I G V+N EA+ VF NM + ++
Sbjct: 341 MISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNM--RAHEIK 398
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L L GK VH YI + + +++ +GT+LID+Y K GC+E A
Sbjct: 399 PDEVTLVSVISACTNLC---ALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAA 455
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACAR 179
+ VF + K WNA+I LA N +L MF EM+ G+ +EITF VL+AC
Sbjct: 456 LEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRH 515
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G + F M K++++P + HYGC+VDLLGRAG + EA++ ++SMP PD G
Sbjct: 516 GGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWG 575
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC H ++ VG++L++L P H G +LSNI+A W DLR +M +
Sbjct: 576 ALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSMKQ-H 634
Query: 300 IRKIPAYSLIEA 311
+ K+ S++E+
Sbjct: 635 VAKVAGCSVVES 646
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 31/252 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + + G ++ A +F+ RD +WT++I+ F RN F EA+ VF +M V
Sbjct: 209 MVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPV- 267
Query: 61 PNEATYVSVLSSCA------------GLVNEGGL-----YLGKQVHGY-----------I 92
+EA VSV+++CA GLV GL +H Y +
Sbjct: 268 -DEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRL 326
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+ L F ++I Y K G +E A +F M KD +W+AMI+ N++ EAL
Sbjct: 327 FDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEAL 386
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+FD M+ ++ +E+T V+V++AC +E G +L H + +++ + ++D+
Sbjct: 387 TVFDNMRAHEIKPDEVTLVSVISACTNLCALEQG-KLVHEYIRQYQYNITIVLGTSLIDM 445
Query: 213 LGRAGLLSEAKE 224
+ G + A E
Sbjct: 446 YMKCGCMEAALE 457
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 45/170 (26%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D VSW +I+ +VR+G +A+ VF M E + +V
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVGVFARM---------PERSAAAV--------------- 206
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
++++ L+ + G +E A VF +D TW AMIS
Sbjct: 207 --------------------SSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFER 246
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
N EAL +F +M+E+G +E V+V+ ACA++++++ G E+ H ++
Sbjct: 247 NDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNG-EVCHGLV 295
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+QVH + +++ ++++ AL+ +Y GC+ A RVF + + D +WN ++++
Sbjct: 125 GRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVR 184
Query: 145 NSREKEALVMFDEMKEKGLRA 165
+ ++A+ +F M E+ A
Sbjct: 185 DGDVEQAVGVFARMPERSAAA 205
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 192/306 (62%), Gaps = 4/306 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G +D A +FE + RDV+SW ++I G+ +NG EAI + NMM +
Sbjct: 391 LVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIV 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L + + + G L G ++HG +++N + L VF+ T LID+YGK G LE A
Sbjct: 450 PNQGTWVSILPAYSHV---GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + WNA+ISSL + ++AL +F +M+ G++A+ ITFV++L+AC+ +
Sbjct: 507 MSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHS 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ F +M ++ + P ++HYGC+VDL GRAG L +A + +MP + DAS+ G
Sbjct: 567 GLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGT 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IHG +L RLLE+ ++ G YV+LSNI+A + +W A +R + G+
Sbjct: 627 LLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGL 686
Query: 301 RKIPAY 306
RK P +
Sbjct: 687 RKTPGW 692
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 135/251 (53%), Gaps = 9/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G + A +F+ M RD+VSW SII + +N A+ FK M+ +R
Sbjct: 289 LINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEML--FVGMR 346
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
P+ T VS+ S L + +G+ VHG+++R + + + +G AL+++Y K+G ++
Sbjct: 347 PDLLTVVSLASIFGQLSDR---RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDC 403
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A VF+ + +DV +WN +I+ A N EA+ ++ M+E + + N+ T+V++L A +
Sbjct: 404 ARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYS 463
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G+++ H L K + + C++D+ G+ G L +A +P E
Sbjct: 464 HVGALQQGMKI-HGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-W 521
Query: 239 GALLGACKIHG 249
A++ + IHG
Sbjct: 522 NAIISSLGIHG 532
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 122/225 (54%), Gaps = 8/225 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ + F+++ ++++ SW S+++ +VR G + +++ ++ +++ VRP+
Sbjct: 93 YATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELL-SLSGVRPDFY 151
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ VL +C L + G+++H ++L+ V++ +LI LY + G +E A +VF
Sbjct: 152 TFPPVLKACLSLAD------GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVF 205
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M ++DV +WNAMIS N EAL + D MK + ++ + +T ++L CA++ V
Sbjct: 206 VDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDV- 264
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+G L H + K + + ++++ + G L +A+ M
Sbjct: 265 VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGM 309
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 5/175 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G ++ A +F +M RDV SW ++I+GF +NG EA+ V M V+
Sbjct: 188 LIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRM--KTEEVK 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T S+L CA + G G VH Y++++ + VF+ ALI++Y K G L+ A
Sbjct: 246 MDTVTVSSMLPICAQSNDVVG---GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDA 302
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
RVF M ++D+ +WN++I++ N AL F EM G+R + +T V++ +
Sbjct: 303 QRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLAS 357
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ KQ+H +L V + T L+ LY +G L + FK + K++ +WN+M+S+
Sbjct: 66 VAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYV 125
Query: 144 SNSREKEALVMFDEMKE-KGLRANEITFVAVLTAC 177
R ++++ E+ G+R + TF VL AC
Sbjct: 126 RRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC 160
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G+ D+A +F+ M +D+ +W ++I+ + + G EA+ +F + + +
Sbjct: 309 MLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLS-KTAK 367
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS LS+CA L G + LG +H YI + + L+ + T+LID+Y K G L++A
Sbjct: 368 PDEVTLVSTLSACAQL---GAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKA 424
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF S+ KDV W+AMI+ LA + K+A+ +F +M+E ++ N +TF +L AC+
Sbjct: 425 LMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHV 484
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F+ M + V+P ++HY C+VD+LGRAGLL EA E + MP P ASV GA
Sbjct: 485 GLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGA 544
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IH V L + +L+EL+P + G YV+LSNI+A +W+R + LRK M + G+
Sbjct: 545 LLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGL 604
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 605 KKEPGCSSIE 614
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 37/218 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ +F N+ +RDVVSW S+I FV+ GC EA+ +F+ M V+
Sbjct: 177 LIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM--ETQNVK 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V VLS+CA + G+ VH YI RN I S+ + A++D+Y K G +E A
Sbjct: 235 PNGITMVGVLSACA---KKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDA 291
Query: 121 IRVFKSMVIKDVCT-------------------------------WNAMISSLASNSREK 149
R+F M KD+ + WNA+IS+ + K
Sbjct: 292 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPK 351
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELG 186
EAL +F E++ K + +E+T V+ L+ACA+ ++LG
Sbjct: 352 EALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 121/237 (51%), Gaps = 5/237 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A +F+ + ++ +W ++I + + +++ +F M+ + + P++ T+ ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML-HQSPDFPDKFTFPFLI 143
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + L L+ GK HG +++ + VF+ +LI Y K G L RVF ++ +
Sbjct: 144 KAASELEE---LFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRR 200
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN+MI++ +EAL +F EM+ + ++ N IT V VL+ACA+ E G
Sbjct: 201 DVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWV 259
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
HS + + + + ++D+ + G + +AK MP + S L+G KI
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 192/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ ++G + LF+ M +RDV+SW +++ +V NG GEA+ FK M + LV
Sbjct: 1 MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRES-GLV- 58
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT V++LS+ A L L G+ +H I + +++ +GTAL+D+Y K GC+E++
Sbjct: 59 PDEATLVTMLSASAQLCL---LEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQS 115
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F++M +DV TWN MI LAS+ K+AL +F+ +GL +TFV VL AC+RA
Sbjct: 116 RLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRA 175
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M + + P MEHYGC+VDLLGRAGL+ EA + + SM PD +
Sbjct: 176 GLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAM 235
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC+IHG +L ++G RL+EL P + G YV L++I+A +W +R+ M E
Sbjct: 236 VLCACRIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNT 295
Query: 301 RKIPAYSLIEA 311
K+ +SLIEA
Sbjct: 296 SKVAGWSLIEA 306
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K G++++A LFE + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 276 LIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--S 333
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PNE T +S+L +CA L G + +G+ +H YI + + + T+LID+Y K G +E
Sbjct: 334 PNEVTMLSILPACAHL---GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIE 390
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ + + +WNAMI A + R A +F M++ G+ ++ITFV +L+AC+
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACS 450
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + SM +PD +
Sbjct: 451 HSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIW 510
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + L++++PK+ G YV+LSNI+A RWN R + +
Sbjct: 511 CSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDK 570
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 571 GMKKVPGCSSIE 582
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 146/305 (47%), Gaps = 43/305 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY NG + SA +F+ + +DVVSW ++I+G+ G + EA+ +FK MM V+
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN--VK 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+VLS+CA + LG+QVH +I + ++ + ALIDLY K G +E A
Sbjct: 233 PDESTMVTVLSACA---QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G NE+T +++L ACA
Sbjct: 290 SGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHL 349
Query: 181 QLVELGL-----------------ELFHSMLGKFEVVPIMEHYGCVVD------------ 211
+++G L S++ + +E V D
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409
Query: 212 ------LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE-- 263
+ GRA + MR EPD LL AC G +DL + R + E
Sbjct: 410 MIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDY 469
Query: 264 -LQPK 267
+ PK
Sbjct: 470 KITPK 474
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 37/250 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +F+++ + +++ W ++ G + A+ ++ M+ ++ LV PN T+ +L +C
Sbjct: 56 AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLV-PNSYTFPFLLKAC 113
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------- 126
A G+Q+HG++L+ L +++ T+LI +Y K G E A +VF
Sbjct: 114 A---KSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVV 170
Query: 127 ------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +KDV +WNA+IS A KEAL +F EM +
Sbjct: 171 SYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN 230
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
++ +E T V VL+ACA++ +ELG ++ HS + ++ ++DL + G + A
Sbjct: 231 VKPDESTMVTVLSACAQSASIELGRQV-HSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
Query: 223 KEFMRSMPFE 232
+ ++
Sbjct: 290 SGLFEGLSYK 299
>gi|359475492|ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 532
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 184/291 (63%), Gaps = 8/291 (2%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
KR V+ W II+ +V+NGC EA+ +F+ M+ ++NL RPN T VSVLS+CA + G L
Sbjct: 113 KRSVLPWNVIISAYVQNGCSFEALSLFRVMIEDLNL-RPNHVTMVSVLSACAQV---GDL 168
Query: 83 YLGKQVHGYILR---NEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
LGK +HGY+ IV S F+ TALID+Y K G L +A VF+ MV KDV ++NAM
Sbjct: 169 DLGKWIHGYVKSEGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAM 228
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
I LA N +EAL +F +M+E LR N TF+ VL AC+ + L++ G ++F M+ F
Sbjct: 229 IMGLAINGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFS 288
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVG 258
V P +EHY C VDLL R GLL EA E + SMPF P+ V GALL C++H ++L +V
Sbjct: 289 VPPELEHYACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVS 348
Query: 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
++L+++ P++ YV+ SN A ++W + LR M E G+RK P S I
Sbjct: 349 QKLVKVDPENSAGYVMFSNALASDQQWGEVSGLRWLMREKGVRKHPGCSWI 399
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 26/237 (10%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL----VNEGGLYL 84
WTS+I G ++G E + +F MM NL RP T VSVLS+C+ L + + + L
Sbjct: 10 WTSLIAGSAQSGQTEEVLRLFF-MMVKENL-RPENDTIVSVLSACSKLEAVEIEKWVMIL 67
Query: 85 GKQVH----GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV---IKDVCTWNA 137
+ ++ G R+ + T L LYGK G +E+ F +V + V WN
Sbjct: 68 SEFINDDDTGSFGRDSV------NTVLAYLYGKWGKVEKCKERFDEIVGIGKRSVLPWNV 121
Query: 138 MISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+IS+ N EAL +F M E LR N +T V+VL+ACA+ ++LG + H +
Sbjct: 122 IISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLG-KWIHGYVKS 180
Query: 197 FEVVPIMEH----YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
I+E ++D+ + G L +AK+ M D A++ I+G
Sbjct: 181 EGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQM-VSKDVVSFNAMIMGLAING 236
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ A +FE M+ +DVVS+ ++I G NG EA+ +F M ++L R
Sbjct: 197 LIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGLAINGEGEEALRLFSKMQ-ELSL-R 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA-LIDLYGKVGCLER 119
PN T++ VL +C+ + G L G+Q+ ++ + V A +DL +VG LE
Sbjct: 255 PNSGTFLGVLCACS---HSGLLDTGRQMFLDMIPHFSVPPELEHYACYVDLLARVGLLEE 311
Query: 120 AIRVFKSM-VIKDVCTWNAMISSLASNSR 147
A V SM + + W A++ +SR
Sbjct: 312 AFEVVASMPFVPNNFVWGALLQGCRLHSR 340
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K+G++D+A +LF+ M +RD V W +I+G+ +NG EA+ +F+ M+ +
Sbjct: 143 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK--AK 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLS+C L G L G+ VH YI N I +V +GTAL+D+Y K G LE A
Sbjct: 201 PNEVTVLSVLSACGQL---GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV WN+MI A +EAL +F M GL ITF+ +L+AC +
Sbjct: 258 RLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHS 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G ++F+ M ++ + P +EHYGC+V+LLGRAG + +A E +++M EPD + G
Sbjct: 318 GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGT 377
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG + L ++ L++ + G Y++LSNI+A + W+ LR M ++G+
Sbjct: 378 LLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 437
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 438 KKEPGCSSIE 447
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 43/251 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G +D ++ LF V WT+II+G G +A+ + M+ V PN
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQML--TQGVEPNAF 76
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L C + GK +H ++ +++ T L+D+Y + G + A ++F
Sbjct: 77 TFSSILKLCP-------IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG---------------------- 162
+M K + + AM++ A + A V+FD M+E+
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189
Query: 163 ---------LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDL 212
+ NE+T ++VL+AC + +E G HS + + + H G +VD+
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYI-ENNGIQFNVHVGTALVDM 247
Query: 213 LGRAGLLSEAK 223
+ G L +A+
Sbjct: 248 YSKCGSLEDAR 258
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 111 YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF 170
Y +G L+ ++ +F V W A+I A ++AL + +M +G+ N TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++L C +E G L HS K + ++D+ R G + A++ +MP
Sbjct: 79 SSILKLCP----IEPGKAL-HSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133
Query: 231 FEPDASVLGALLGACKIHGAVD 252
E L A+L HG +D
Sbjct: 134 -EKSLVSLTAMLTCYAKHGELD 154
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 197/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V+ G M SA +F+ M R +VSWT++ING+ R GC+ +A+ +F+ M V +
Sbjct: 178 LISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREM--QVVGIE 235
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +SVL +CA L G L +GK +H Y ++ + + + AL+++Y K GC++ A
Sbjct: 236 PDEISVISVLPACAQL---GALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEA 292
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M+ KDV +W+ MI LA++ + A+ +F++M++ G+ N +TFV VL+ACA A
Sbjct: 293 WGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHA 352
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L GL F M + + P +EHYGC+VDLLGR+G + +A + + MP +PD+ +
Sbjct: 353 GLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNS 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+IH +++ +LL+L+P+ G YV+L+NI+A L++W +++RK + I
Sbjct: 413 LLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRI 472
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 473 KKTPGCSLIE 482
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 37/270 (13%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A ++F+ + +V S+ +II + N AI VF N M P++ T+ V+
Sbjct: 55 VDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVF-NQMLTTKSASPDKFTFPFVI 113
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SCAGL+ LG+QVH ++ + ALID+Y K G + A +V++ M +
Sbjct: 114 KSCAGLLCR---RLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTER 170
Query: 131 DVCTWNAMISSLA-----SNSRE--------------------------KEALVMFDEMK 159
D +WN++IS ++RE +AL +F EM+
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G+ +EI+ ++VL ACA+ +E+G + H K + + +V++ + G +
Sbjct: 231 VVGIEPDEISVISVLPACAQLGALEVG-KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCI 289
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHG 249
EA M E D ++G HG
Sbjct: 290 DEAWGLFNQM-IEKDVISWSTMIGGLANHG 318
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VR E +V+ L +C + K++H +I++ + S F+ T ++DL + ++
Sbjct: 3 VRELENRFVTTLRNCPKIAEL------KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVD 56
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTAC 177
A +F+ + +V ++NA+I + N + A+ +F++M K ++ TF V+ +C
Sbjct: 57 YATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSC 116
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A LG ++ H+ + KF ++D+ + G +S A + M E DA
Sbjct: 117 AGLLCRRLGQQV-HAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMT-ERDAVS 174
Query: 238 LGALL 242
+L+
Sbjct: 175 WNSLI 179
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G + +A+ LF+ M + D++SWT+++NGFV+ G EA+ F+ M ++ V+
Sbjct: 121 MIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREM--QISGVK 178
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L LG VH Y++ + +V + +LIDLY + GC+E A
Sbjct: 179 PDYVAIIAALNACTNL---GALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFA 235
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I A+N E+LV F +M+E+G + N +TF LTAC+
Sbjct: 236 REVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHV 295
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL F SM + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 296 GLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGS 355
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 356 LLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLG 415
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 416 LKKQPGFSSIE 426
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 44/240 (18%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+VSWTS I R+ EA F +M + V P T++++LS C G G LG
Sbjct: 11 IVSWTSRITLLTRSAXLAEAAKEFADM--RLAGVEPTHITFIALLSGC-GDFPSGSETLG 67
Query: 86 KQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN---- 136
+HGY + RN V +GTA++ +Y K G +++A VF M K+ TWN
Sbjct: 68 DLLHGYACKLGLDRNH----VMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMID 123
Query: 137 ---------------------------AMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
AM++ +EALV F EM+ G++ + +
Sbjct: 124 GYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVA 183
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+A L AC + LGL + H + + + ++DL R G + A+E M
Sbjct: 184 IIAALNACTNLGALSLGLWV-HRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 242
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G VK G +D A LF+ M +R++VSW ++++G+V+ G F +A+ VF M V
Sbjct: 177 MVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEM--RARGVD 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + +C G G L G++VH ++ R+ I + + TA++D+Y K GC+E A
Sbjct: 235 GNAFVAATAVVACTG---AGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGCVEEA 291
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+++ + + +WN MI A + R ++AL +F M+ +G+ +++T V VLTACA A
Sbjct: 292 WRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACAHA 351
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V G F+ + ++ +VP MEHYGC+VDL GRAG L EAK+ ++ MP EPD VLGA
Sbjct: 352 GMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVIQDMPMEPDVGVLGA 411
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L GA KIHG VDL +G R++EL P++ GRYV+L+N+ A RW +R+ M E +
Sbjct: 412 LFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNV 471
Query: 301 RKIPAYSLIE 310
K S+IE
Sbjct: 472 SKEAGRSVIE 481
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
L V T ++ K+G ++ A +F M +++ +WNAM+S R +AL +FDE
Sbjct: 168 ALDVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDE 227
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ +G+ N + AC A + G E+ H + + + + VVD+ + G
Sbjct: 228 MRARGVDGNAFVAATAVVACTGAGALARGREV-HRWVERSGIEMDDKLATAVVDMYCKCG 286
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ EA ++P + ++G +HG
Sbjct: 287 CVEEAWRVFEALPAR-GLTSWNCMIGGFAVHG 317
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 200/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LF+ + +DV+SW ++I G+ + EA+ +F++M+ + +
Sbjct: 276 LIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE--K 333
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+LS+CA L G + +G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 334 PNDVTMLSILSACAHL---GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 390
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ + + +WNAMI A + R A +F M++ G+ ++ITFV +L+AC+
Sbjct: 391 AAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM ++++P +EHYGC++DL G +GL EA++ + +M EPD +
Sbjct: 451 HSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIW 510
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + L++++P++ G YV+LSNI+A ERWN R + +
Sbjct: 511 CSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDK 570
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 571 GMKKVPGCSSIE 582
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 156/322 (48%), Gaps = 46/322 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G ++SA +F+ + +DVVSW + I+G+ G + EA+ +FK MM VR
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTN--VR 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+VLS+CA G + LG+QVH +I + ++ + ALIDLY K G LE A
Sbjct: 233 PDESTMVTVLSACA---QSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA 289
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F +M G + N++T +++L+ACA
Sbjct: 290 CGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHL 349
Query: 181 QLVELGL-----------------ELFHSMLGKFEVVPIMEHYGCVVD------------ 211
+++G L S++ + +E V D
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409
Query: 212 ------LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR---RLL 262
+ GRA + MR EPD LL AC G +DL + R R
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDY 469
Query: 263 ELQPK--HCGRYVVLSNIHAGL 282
+L PK H G + L H+GL
Sbjct: 470 KLMPKLEHYGCMIDLXG-HSGL 490
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 39/241 (16%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEATYVSVLSS 72
AI +F+ + + ++ W ++ G + + + K + V+L + PN T+ +L S
Sbjct: 56 AISVFDTIQEPXLLIWNTMFRG---HALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS 112
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV--------- 123
CA G+Q+HG +L+ L +++ T+LI +Y + G LE A +V
Sbjct: 113 CA---KSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169
Query: 124 ----------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
F + +KDV +WNA IS A KEAL +F +M +
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
+R +E T V VL+ACA++ +ELG ++ HS + ++ ++DL + G L
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQV-HSWINDHGFGXNLKIVNALIDLYSKCGELET 288
Query: 222 A 222
A
Sbjct: 289 A 289
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 190/306 (62%), Gaps = 3/306 (0%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA +F + +DV+SW +II+G+ +NG EAI ++ M + N+
Sbjct: 394 YAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQG 453
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVL +C+ G L G ++HG +L+N + L VF+GT+L D+YGK G L+ A+ +F
Sbjct: 454 TWVSVLPACS---QAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLF 510
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + WN +I+ + ++A+++F EM ++G++ + ITFV +L+AC+ + LV+
Sbjct: 511 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 570
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F M + + P ++HYGC+VDL GRAG L A F++SMP +PDAS+ GALL A
Sbjct: 571 EGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSA 630
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG VDL L E++P+H G +V+LSN++A +W ++R G+RK P
Sbjct: 631 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTP 690
Query: 305 AYSLIE 310
+S +E
Sbjct: 691 GWSSME 696
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 147/288 (51%), Gaps = 13/288 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G + +F+ M RD++SW SII + N AI +F+ M ++ ++
Sbjct: 288 LIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEM--RLSRIQ 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T +S+ S + L G + + V G+ LR L + +G A++ +Y K+G ++
Sbjct: 346 PDCLTLISLASILSQL---GEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTAC 177
A VF + KDV +WN +IS A N EA+ M++ M+E+G + AN+ T+V+VL AC
Sbjct: 403 ARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPAC 462
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
++A + G++L +L + + + D+ G+ G L +A +P ++
Sbjct: 463 SQAGALRQGMKLHGRLLKNGLYLDVFVGTS-LADMYGKCGRLDDALSLFYQIP-RVNSVP 520
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
L+ HG + + + +L+ ++P H +LS H+GL
Sbjct: 521 WNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 568
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y G++ A F+++ RDV +W +I+G+ R G E I F M + L +
Sbjct: 92 LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGL-Q 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVL +C + + G ++H L+ + V++ +LI LY + G + A
Sbjct: 151 PDYRTFPSVLKACRNVTD------GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNA 204
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
+F M +D+ +WNAMIS + KEAL + D GLRA + +T V++L+AC
Sbjct: 205 RILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSD-----GLRAMDSVTVVSLLSACTE 259
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A G+ + HS K + + ++DL G L + ++ M
Sbjct: 260 AGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + +A +LF+ M RD+ SW ++I+G+ ++G EA+ + +
Sbjct: 191 LIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA------ 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VS+LS+C G G +H Y +++ + +F+ LIDLY + G L+
Sbjct: 245 MDSVTVVSLLSAC---TEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDC 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++D+ +WN++I + N + A+++F EM+ ++ + +T +++ A +
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISL--ASILS 359
Query: 181 QLVEL 185
QL E+
Sbjct: 360 QLGEI 364
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 5/166 (3%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L K +H ++ + + +V + L++LY +G + A F + +DV WN MIS
Sbjct: 67 LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126
Query: 142 LASNSREKEALVMFD-EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
E + F M GL+ + TF +VL AC V G ++ H + KF +
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKI-HCLALKFGFM 182
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ ++ L R G + A+ MP S + G C+
Sbjct: 183 WDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 200/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+GD+ SA L+F+ M +RDVV+W+S+I+G+V+ G + +A+ +F MM + +
Sbjct: 926 ILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMM-RMGSSK 984
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSV+ +CA L G L GK VH YIL + L+V + T+LID+Y K G + A
Sbjct: 985 ANEVTMVSVICACAHL---GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDA 1041
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF +K D WNA+I LAS+ +E+L +F +M+E + +EITF+ +L AC+
Sbjct: 1042 WSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 1101
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ F S L + P EHY C+VD+L RAGL+ +A +F+ MP +P S+L
Sbjct: 1102 HGGLVKEAWHFFKS-LKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSML 1160
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C HG ++L VG++L+ELQP + GRYV L+N++A +++ A +R+AM +
Sbjct: 1161 GALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 1220
Query: 299 GIRKIPAYSLIE 310
G++KI +S+++
Sbjct: 1221 GVKKIAGHSILD 1232
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 140/332 (42%), Gaps = 50/332 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
D+D A + W +I GF + ++I V+ M+ L+ P+ TY
Sbjct: 801 TSDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQML-RFGLL-PDHMTYP 858
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------- 112
++ S + L N LG +H ++++ + +F+ LI +YG
Sbjct: 859 FLMKSSSRLSNRK---LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 915
Query: 113 ----------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
K G + A VF M +DV TW++MI +AL +FD
Sbjct: 916 PHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFD 975
Query: 157 EMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLG 214
+M G +ANE+T V+V+ ACA + G + +L + I++ ++D+
Sbjct: 976 QMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ--TSLIDMYA 1033
Query: 215 RAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHC 269
+ G + +A F R+ E DA + A++G HG ++ L H++ R ++ P
Sbjct: 1034 KCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKM--RESKIDPDEI 1091
Query: 270 GRYVVLSNI-HAGL--ERWNRATDLRKAMVEA 298
+L+ H GL E W+ L+++ E
Sbjct: 1092 TFLCLLAACSHGGLVKEAWHFFKSLKESGAEP 1123
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 2 IDGYVKNGDMDSAILLFENMLKR----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN 57
IDG +KN +D + LF ++ DV+++ +I + EA +F M+
Sbjct: 586 IDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKG- 644
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
++P ATY S++ G EG + G + +E V T+LI G
Sbjct: 645 -LKPTVATYNSMID---GWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRP 700
Query: 118 ERAIRVFKSMVIKDV----CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
AI + M KD T+ A+I L EALV F EM+EK + + ++++
Sbjct: 701 SEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSL 760
Query: 174 LTACARAQLVELGLELFHSML--GKFEV 199
+++ ++ + G +F M+ G+F V
Sbjct: 761 VSSFLSSENINAGFGIFREMVHKGRFPV 788
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 1 MIDGYVKNGDMDSA----ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
MIDG+ K G++D + ++E+ DV+++TS+I+G +G EAI + M G
Sbjct: 655 MIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKD 714
Query: 57 NLVRPNEATYVSVLS 71
PN T+++++
Sbjct: 715 --CYPNRITFMALIQ 727
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++G+++NG+++ AI LF+ M RD +SWT++ING +++G +A+ F M + V
Sbjct: 167 MLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG--VA 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + ++VL++CA L G L LG VH +++ E ++ + +LID+Y + GC+E A
Sbjct: 225 ADYVSIIAVLAACADL---GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + + +WN++I A N E+L F M+++G + + +++ LTAC+ A
Sbjct: 282 RQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLELF +M ++ P +EHYGC+VDL GRAG L +A + MP +P+ VLG+
Sbjct: 342 GLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGS 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V+L + + L +L P+ YV+LSNI+A + +W+ A ++R+ M G+
Sbjct: 402 LLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGV 461
Query: 301 RKIPAYSLIE 310
+K P YS +E
Sbjct: 462 QKKPGYSSVE 471
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+V WTS + + RNG EA F M + V PN T++++LS+CA +E +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRM--RLAGVEPNHITFITLLSACADFPSES-FFFA 113
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKV------------------------------ 114
+HGY + + V +GTALID+Y K
Sbjct: 114 SSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMR 173
Query: 115 -GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G +E AI++F M +D +W A+I+ L + ++AL F +M+ G+ A+ ++ +AV
Sbjct: 174 NGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAV 233
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L ACA + LGL + H + E ++ ++D+ R G + A++ M
Sbjct: 234 LAACADLGALTLGLWV-HRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM 288
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
F + + W + ++ N + EA F M+ G+ N ITF+ +L+ACA
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA 103
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+KNGD+D A+ LF+ + ++VVSWT +I GFV+ C+ EA+ F+ M + V
Sbjct: 163 MIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREM--QLAGVV 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++++S+CA L G L LG VH +++ E +V + +LID+Y + GC+E A
Sbjct: 221 PDFVTVIAIISACANL---GALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELA 277
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +++ +WN++I A N +AL F MK++GL N +++ + LTAC+ A
Sbjct: 278 RQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHA 337
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL++F + P +EHYGC+VDL RAG L EA + ++ MP P+ VLG+
Sbjct: 338 GLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGS 397
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ G V+L +V + +EL P YV+ SNI+A + +W+ A+ +R+ M E G+
Sbjct: 398 LLAACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGL 457
Query: 301 RKIPAYSLIE 310
+K A+S IE
Sbjct: 458 QKNLAFSSIE 467
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 35/254 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
N + + + L VSWTS I+ +N F +A F M+ V PN T +
Sbjct: 34 NPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAE--VEPNHITLI 91
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKS 126
++LS+CA ++ + G +H + ++ ++ V +GTALID+Y K G L+ A VF
Sbjct: 92 TLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQ 151
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFD------------------------------ 156
M ++++ +WN MI N +AL +FD
Sbjct: 152 MGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECF 211
Query: 157 -EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
EM+ G+ + +T +A+++ACA + LGL + H ++ K E ++ ++D+ R
Sbjct: 212 REMQLAGVVPDFVTVIAIISACANLGALGLGLWV-HRLVMKKEFRDNVKVLNSLIDMYAR 270
Query: 216 AGLLSEAKEFMRSM 229
G + A++ M
Sbjct: 271 CGCIELARQVFDGM 284
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D YVKNG A +F+ + RD+VSWT +I G V++ +++ +F +MM + +
Sbjct: 243 MLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF-SMMRTLG-IS 300
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L G VH YI + I + +GTA++D+Y K GC+E A
Sbjct: 301 PDAIILTSVLSACASL---GTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMA 357
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F SM ++ TWNA++ LA + EAL +F+ M G++ NEITF+A+LTAC
Sbjct: 358 LKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHC 417
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F +M + ++P +EHYGC++DL RAGLL EA E R+MP +PD + G
Sbjct: 418 GLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGL 477
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC G ++L H + +LEL G +V+LSNI A +RW+ T LR+ M + G+
Sbjct: 478 LLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGV 537
Query: 301 RKIPAYSLIE 310
RK P S+IE
Sbjct: 538 RKAPGSSVIE 547
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 20/260 (7%)
Query: 1 MIDGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN 51
+ D YV+N GD A +F+ ML RDVVSW S+I+GF++ G F EAI VF
Sbjct: 137 LADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFR 196
Query: 52 MMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
M V P+ T VSVL++CA G L GK +HG I R +++ +G A++D+Y
Sbjct: 197 MD-----VEPSMTTLVSVLAACA---RNGDLCTGKGIHGVIER-RFKVNLVLGNAMLDMY 247
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
K GC A +F + +D+ +W MI+ L + K++L +F M+ G+ + I
Sbjct: 248 VKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILT 307
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
+VL+ACA ++ G + H + + + + +VD+ + G + A + SM
Sbjct: 308 SVLSACASLGTLDFGTWV-HEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMS- 365
Query: 232 EPDASVLGALLGACKIHGAV 251
+ + ALL +HG V
Sbjct: 366 QRNTFTWNALLCGLAMHGLV 385
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 44/259 (16%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+ING+V A+ V++ M+ + + P+ T+ +L +C+ N G G+QV
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFV--PDMFTFPVLLKACS---NFSGSREGRQV 127
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG +++ ++ ++ +LI YG G A +VF M+++DV +WN++IS
Sbjct: 128 HGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHF 187
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+ +F M + + T V+VL ACAR + G + + +F+V ++ +
Sbjct: 188 DEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGN--A 242
Query: 209 VVDLLGRAGLLSEAK----------------------------------EFMRSMPFEPD 234
++D+ + G EAK MR++ PD
Sbjct: 243 MLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPD 302
Query: 235 ASVLGALLGACKIHGAVDL 253
A +L ++L AC G +D
Sbjct: 303 AIILTSVLSACASLGTLDF 321
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYVK+GD+ A LF+ M R+VVSWT +I + + EAI VF+ M V +
Sbjct: 148 MIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRM--QVEGIE 205
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +SVLS+C L G + LG+ VH ++LR + + + A+ID+Y K G +++A
Sbjct: 206 PDGVALLSVLSACGDL---GVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKA 262
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K + TW MI+ A + EA+ +F M+++ + N+ITF+AVL+ C+
Sbjct: 263 LEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHV 322
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L +LG F +M+ ++++ P +EHYGC++DLLGRAG L EA+ ++ MPF+ +A++ GA
Sbjct: 323 GLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGA 382
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A + HG +L + L+EL+P + G Y++LSNI+A ERW+ +LR +M + G+
Sbjct: 383 LLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGL 442
Query: 301 RKIPAYSLIE 310
R +P S I+
Sbjct: 443 RNVPGASSID 452
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 39/178 (21%)
Query: 87 QVHGYILR------------------------------NEIVLS--VFMGTALIDLYGKV 114
Q+H ++R +E S V +ID Y K
Sbjct: 96 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G L RA +F M ++V +W +I + A + +EA+ +F M+ +G+ + + ++VL
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215
Query: 175 TACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+AC +V+LG E H + G + +P+M ++D+ + G + +A E M
Sbjct: 216 SACGDLGVVDLG-EWVHRFVLRRGLCQEIPLM---NAIIDMYVKCGSVKKALEVFEGM 269
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 195/305 (63%), Gaps = 8/305 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G + A LF+ M R+ +W+ +I+G V +G EA+ +F +M+ + +V
Sbjct: 183 MLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLFGDMVHSSGIV- 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
PNE VSV+S+CA + + L G VH Y + + +SV + +A+ID+YGK G +
Sbjct: 242 PNEPALVSVVSACAQMRS---LEHGAWVHAYAEQELQGAMSVVLASAIIDMYGKCGGIHS 298
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AIRVF +M ++++ +WNAMI+ LA N E++AL + +M+ G++ N+ITF+ +L+AC
Sbjct: 299 AIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPNDITFIGLLSACTH 358
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV G LF SM+ F + P +HYG +VDL+GR+G + EA F++SMP EP + G
Sbjct: 359 SGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFVKSMPVEPHPGLWG 418
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL ACK+HG V+L EV ++L+EL+P+H RY++LSN++ + RW+ +RK +
Sbjct: 419 ALASACKMHGKVELGEEVAKKLIELEPRHGSRYILLSNLYGSVNRWDDMASVRKILKR-- 476
Query: 300 IRKIP 304
RK+P
Sbjct: 477 -RKVP 480
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 93/238 (39%), Gaps = 55/238 (23%)
Query: 2 IDGYVKNGDMDSAILLFENMLKR--DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ Y D+ SA LF + DVV+WT+++ G G G A F + M N+V
Sbjct: 120 VSSYFAASDVASADRLFAEVSTDVADVVTWTTMVTGHASAGGLGRARHFF-DAMSERNVV 178
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
N A++ Y + G L
Sbjct: 179 SWN-------------------------------------------AMLSAYARAGMLTE 195
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A +F +M ++ TW+ MIS L + R EAL +F +M G+ NE V+V++ACA
Sbjct: 196 ARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVSVVSACA 255
Query: 179 RAQLVELGLELF----HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+ + +E G + + G VV ++D+ G+ G + A +MP
Sbjct: 256 QMRSLEHGAWVHAYAEQELQGAMSVVLA----SAIIDMYGKCGGIHSAIRVFAAMPMR 309
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 197/314 (62%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+ GY K G+M +A LFE M + RDVVSWT++I+G+ + EAI +F+ M+ +
Sbjct: 199 MLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIML--LQN 256
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGC 116
V+P+E ++VLS+CA L G L LG+ +H YI + N++ +V + +LID+Y K G
Sbjct: 257 VQPDEIAILAVLSACADL---GALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGD 313
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ +A ++F++M K + TW +IS LA + KEAL +F M++ ++ NE+T +AVL+A
Sbjct: 314 ISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSA 373
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ LVELG +F SM K+ + P +EHYGC++DLLGRAG L EA E +R MP E +A+
Sbjct: 374 CSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAA 433
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
V G+LL A +G L E R L L+P +CG Y +LSN +A L W A +RK M
Sbjct: 434 VWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTYAALGWWKEAAMVRKVMR 493
Query: 297 EAGIRKIPAYSLIE 310
+ K+P S +E
Sbjct: 494 DTCAEKVPGVSFVE 507
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 45/207 (21%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ VL + L +++GKQ+H + + + + T+L+ +Y L A
Sbjct: 125 PDSYSFPFVLKAVVCL---SAVHVGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSSA 181
Query: 121 IRVFKSMVIKDVCTWNAMISSLA-----SNSRE--------------------------- 148
++F K WNAM++ A SN+R
Sbjct: 182 RKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHS 241
Query: 149 -KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF-----EVVPI 202
EA+ +F M + ++ +EI +AVL+ACA ++LG E H+ + K + VP+
Sbjct: 242 PNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLG-EWIHNYIEKHNNKLRKTVPL 300
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++D+ ++G +S+A++ ++M
Sbjct: 301 C---NSLIDMYAKSGDISKARQLFQNM 324
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 198/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YV+ + SA LFE M KRDVVSWT++I G+ ++G EA+ VF+NM+ +V
Sbjct: 202 LLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMV-HVGEAI 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT V+VLS+C+ + L+LG+ VH YI R+++++ +G ALI++Y K G +E
Sbjct: 261 PNEATLVNVLSACSSI---SALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEM 317
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI +FK++ KD+ +W+ +IS LA N K+A V+F M G+ ++ITF+ +L+AC+
Sbjct: 318 AILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSH 377
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+ G+ +F +M + + P M HY C+VD+ G+AGLL EA+ F++ MP E + V G
Sbjct: 378 GGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWG 437
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++HG +V LL + G + +LSN +A +RWN A D+R AM G
Sbjct: 438 ALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRG 497
Query: 300 IRKIPAYSLIE 310
++K+ S IE
Sbjct: 498 LKKMAGRSWIE 508
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 10/191 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ +GD+ SA L+F+++ DVVSWTSII+G + G EA+ F +M VRPN
Sbjct: 108 YILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN-----VRPNST 162
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V+ LS+C+ L L LGK +HG +R +V + AL+D Y + L A +F
Sbjct: 163 TLVTALSACSSL---RCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLF 219
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLV 183
+ M +DV +W MI A + +EA+ +F M G NE T V VL+AC+ +
Sbjct: 220 EKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISAL 279
Query: 184 ELGLELFHSML 194
LG + HS +
Sbjct: 280 HLG-QWVHSYI 289
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 15/200 (7%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N T+ L +C L G ++H +++++ + +F+ +L+ Y G + A
Sbjct: 62 NHFTFTYALKACCFLHQTQK---GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSAS 118
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+F S+ DV +W ++IS L+ EKEAL F M +R N T V L+AC+ +
Sbjct: 119 LIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN---VRPNSTTLVTALSACSSLR 175
Query: 182 LVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LG + H + + E I+E+ ++D R L A+ MP + D
Sbjct: 176 CLKLG-KAIHGLRMRTLNEENVILEN--ALLDFYVRCAYLRSAENLFEKMP-KRDVVSWT 231
Query: 240 ALLGACKIHGAVDLCHEVGR 259
++G G LC E R
Sbjct: 232 TMIGGYAQSG---LCEEAVR 248
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY ++GD+ +A+ LFE+M +RDV SW +I+ +NG F EA+ +F+ M+ N +R
Sbjct: 199 MLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMI-NEPSIR 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA G L L K +H + R ++ VF+ +L+DLYGK G LE A
Sbjct: 258 PNEVTVVCVLSACA---QTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---KGLRANEITFVAVLTAC 177
VFK K + WN+MI+ A + R +EA+ +F+EM + ++ + ITF+ +L AC
Sbjct: 315 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNAC 374
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LV G F M +F + P +EHYGC++DLLGRAG EA E M +M + D ++
Sbjct: 375 THGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAI 434
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL ACKIHG +DL + L+ L P + G +++N++ + W A RK +
Sbjct: 435 WGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKH 494
Query: 298 AGIRKIPAYSLIE 310
K P +S IE
Sbjct: 495 QNAYKPPGWSRIE 507
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 43/258 (16%)
Query: 49 FKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108
F +M N ++ RPN Y VL S L + VH ++ ++ L V + TAL+
Sbjct: 112 FFRLMVNRSVPRPNHFIYPLVLKSTPYL---SSAFSTPLVHTHLFKSGFHLYVVVQTALL 168
Query: 109 DLYGK-VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------ 161
Y V + A ++F M ++V +W AM+S A + A+ +F++M E+
Sbjct: 169 HSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWN 228
Query: 162 --------------------------GLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
+R NE+T V VL+ACA+ ++L + H+
Sbjct: 229 AILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGI-HAFAY 287
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
+ ++ + +VDL G+ G L EA + M + + +++ +HG +
Sbjct: 288 RRDLSSDVFVSNSLVDLYGKCGNLEEASSVFK-MASKKSLTAWNSMINCFALHGRSEEAI 346
Query: 256 EVGRRLLEL-----QPKH 268
V +++L +P H
Sbjct: 347 AVFEEMMKLNINDIKPDH 364
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 197/310 (63%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +++A +F++M RD VSW ++I G+++NG EAI V+ +M + L +
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL-K 371
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+VSVL + + L G L G ++H ++ + L V++GT +IDLY K G L+ A
Sbjct: 372 PIQGTFVSVLPAYSHL---GALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEA 428
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ + WNA+IS + + +AL +F +M+++G+ + +TFV++L AC+ A
Sbjct: 429 MLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHA 488
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + + PI +HY C+VD+ GRAG L +A +F+R+MP +PD+++ GA
Sbjct: 489 GLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGA 548
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ + L EL PK+ G YV++SN++A + +W+ ++R + +
Sbjct: 549 LLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 608
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 609 QKTPGWSSIE 618
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 9/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MID Y K G ++ +F+ M RD+V+W SII+G + G A+ +F M + V
Sbjct: 211 MIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSG--VS 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+ T +S+ S+ A G + G+ VH Y++R V + G A++D+Y K+ +E
Sbjct: 269 PDVLTLLSLASAIAQC---GDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEA 325
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A R+F SM ++D +WN +I+ N EA+ ++D M K +GL+ + TFV+VL A +
Sbjct: 326 AQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYS 385
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G + H++ K + + CV+DL + G L EA P
Sbjct: 386 HLGALQQGTRM-HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPW 443
Query: 239 GALLGACKIHG 249
A++ +HG
Sbjct: 444 NAVISGVGVHG 454
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 5/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G + A F+ M RDV +W ++++G RN EA+ +F M+ + V
Sbjct: 110 LVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV--MEGVA 167
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVL C L G L +H Y +++ + +F+ A+ID+YGK+G LE
Sbjct: 168 GDAVTVSSVLPMCVLL---GDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEV 224
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ TWN++IS + A+ MF M++ G+ + +T +++ +A A+
Sbjct: 225 RKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQC 284
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ G + M+ + V + +VD+ + + A+ SMP
Sbjct: 285 GDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 87 QVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
Q+H LR ++ F AL+ Y + G + A R F M +DV WNAM+S L N
Sbjct: 89 QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACA--RAQLVELGLELF---HSMLGKFEVV 200
+R EA+ +F M +G+ + +T +VL C + + L + L+ H + + V
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
M +D+ G+ G+L E ++ M
Sbjct: 209 NAM------IDVYGKLGMLEEVRKVFDGM 231
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++NG +D+A+ +F+ M +RD++SWT++I GFV+ G EA+ F+ M ++ V
Sbjct: 143 MIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREM--QISGVN 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++++ A N G L G H Y++ + +V + +LIDLY + GC+E A
Sbjct: 201 PD---YVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFA 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M + V +WN++I A+N E+LV F +M+E+G + + +TF LTAC+
Sbjct: 258 RQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHV 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F M + + P +EH+GC+VDL RAG L +A + + SMP +P+ V+G+
Sbjct: 318 GLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGS 377
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + + +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 378 LLAACRNHGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLG 437
Query: 300 IRKIPAYSLIE 310
++K P YS IE
Sbjct: 438 LKKQPGYSSIE 448
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
+ +++ I +VSWTS I R+ EA F +M + + PN T
Sbjct: 13 TRKNNVNPKIQKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDM--RLAGIEPNHIT 70
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVF 124
++S+LS+C G G L +HGY + + S V +GTA++ +Y K G + +A VF
Sbjct: 71 FISLLSAC-GNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVF 129
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWN MI N + A+ +FDEM E+ L I++ A++T + E
Sbjct: 130 DYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDL----ISWTAMITGFVKKGFHE 185
Query: 185 LGLELFHSM 193
L F M
Sbjct: 186 EALAWFREM 194
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +D+A +F+ M +RD++SWT++INGFV G EA+ F+ M ++ V+
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREM--QISGVK 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L G VH Y++ + +V + +LIDLY + GC+E A
Sbjct: 204 PDYVAIIAALNACTNL---GALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFA 260
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN++I A+N E+LV F +M+E+ + + +TF LTAC+
Sbjct: 261 RQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHV 320
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M+ + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 321 GLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS 380
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L ++ + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 381 LLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 440
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 441 LKKQPGFSSIE 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+ VSWTS I RNG EA F +M + V PN T++++LS C G G L
Sbjct: 35 NTVSWTSRITLLTRNGRLAEAAKEFSDM--RLAGVEPNHITFIAILSGC-GDFPSGSEAL 91
Query: 85 GKQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G +HGY + RN V +GTA+I +Y K G +++A VF M K+ TWN MI
Sbjct: 92 GDLLHGYACKLGLDRNH----VMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMI 147
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+ + A MFD+M E+ L I++ A++ E L F M
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDL----ISWTAMINGFVNKGFHEEALAWFREM 197
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA-- 178
I+ ++ +W + I+ L N R EA F +M+ G+ N ITF+A+L+ C
Sbjct: 25 IQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDF 84
Query: 179 -----------RAQLVELGLELFHSMLG 195
+LGL+ H M+G
Sbjct: 85 PSGSEALGDLLHGYACKLGLDRNHVMVG 112
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY K GD++SA F+ +++ V W+++I G+ +N E++ +F MM V
Sbjct: 430 MVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERG--VV 487
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
P E T VSVLS+C L L LG +H Y + +I+ LSV + A++D+Y K G ++
Sbjct: 488 PIEHTLVSVLSACGQLT---CLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDA 544
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M +++ +WN MI+ A+N R K+A+ +FD+M+ G N ITFV++LTAC+
Sbjct: 545 ATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSH 604
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+ G E F +M K+ + P HY C+VDLLGR GLL EA + + +MP +P + G
Sbjct: 605 GGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWG 664
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++HG V+L LL L P+ G YV+L+N A +W+ +R M + G
Sbjct: 665 ALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKG 724
Query: 300 IRKIPAYSLIE 310
++KIP YSLIE
Sbjct: 725 VKKIPGYSLIE 735
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 38/262 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + +A +F+ +DVV+WT++I+G+ + C EA+ VF+ M+ ++ V
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELML--LSHVE 355
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T ++V+S+C+ + G L +GK+VH + + S+ + AL+D+Y K CL A
Sbjct: 356 PNEVTLIAVVSACSDM---GNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDA 412
Query: 121 IRVFKSMVIKDVCTW-------------------------------NAMISSLASNSREK 149
+F M KDV +W +AMI+ + N++ K
Sbjct: 413 RELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPK 472
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGC 208
E+L +F EM E+G+ E T V+VL+AC + + LG + H +++P+ +
Sbjct: 473 ESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG-DWIHQYFVVGKIIPLSVTLENA 531
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+VD+ + G + A E +MP
Sbjct: 532 IVDMYAKCGSIDAATEVFSTMP 553
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 20/301 (6%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGF--VRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
+GD+ A +F + + + W ++I G+ R F + V+ + V + +
Sbjct: 204 SGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLR----VEMDSRS 259
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+V L +C ++ G+ V+ + + + + LI Y + G L+ A +VF
Sbjct: 260 FVFALKACQQFET---VFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFD 316
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
KDV TW MI A++ +EA+ +F+ M + NE+T +AV++AC+ +E+
Sbjct: 317 ESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEM 376
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
G + H + + + + + ++D+ + L +A+E M + S + G
Sbjct: 377 GKRV-HEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYA 435
Query: 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD---LRKAMVEAGIRK 302
K DL E RR + P+ V S + AG + N+ + L M+E G+
Sbjct: 436 K---CGDL--ESARRFFDQTPRKNA--VCWSAMIAGYSQNNKPKESLKLFHEMMERGVVP 488
Query: 303 I 303
I
Sbjct: 489 I 489
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++G+++NG+++ AI LF+ M RD +SWT++ING +++G +A+ F M + V
Sbjct: 167 MLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG--VA 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + ++VL++CA L G L LG VH +++ E ++ + +LID+Y + GC+E A
Sbjct: 225 ADYVSIIAVLAACADL---GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + + +WN++I A N E+L F M+++G + + +++ LTAC+ A
Sbjct: 282 RQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLELF +M ++ P +EHYGC+VDL GRAG L +A + MP +P+ VLG+
Sbjct: 342 GLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGS 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V+L + + L +L P+ YV+LSNI+A + +W+ A ++R+ M G+
Sbjct: 402 LLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGV 461
Query: 301 RKIPAYSLIE 310
+K P YS +E
Sbjct: 462 QKKPGYSSVE 471
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+V WTS + + RNG EA F M + V PN T++++LS+CA +E +
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRM--RLAGVEPNHITFITLLSACADFPSES-FFFA 113
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKV------------------------------ 114
+HGY + + V +GTALID+Y K
Sbjct: 114 SSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMR 173
Query: 115 -GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G +E AI++F M +D +W A+I+ L + ++AL F +M+ G+ A+ ++ +AV
Sbjct: 174 NGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAV 233
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L ACA + LGL + H + E ++ ++D+ R G + A++ M
Sbjct: 234 LAACADLGALTLGLWV-HRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKM 288
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
F + + W + ++ N + EA F M+ G+ N ITF+ +L+ACA
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA 103
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 189/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + GD++SA+ +F ML RDV SW ++I G +NG F + I +F+ M+ N R
Sbjct: 177 MVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECN--R 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V LS+C + G L LG+ +HGY+ +N + F+ AL+D+YGK G L +A
Sbjct: 235 PNGVTVVCALSACGHM---GMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKA 291
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACA 178
+VF+ K + +WN+MI+ A + + A+ +F++M E G +R +E+TFV +L AC
Sbjct: 292 RKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACT 351
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G F M+ ++ + P +EHYGC++DLLGRAG EA + ++ M EPD V
Sbjct: 352 HGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVW 411
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL CK+HG DL ++L+E+ P + G ++L+N++ L +W+ ++ + + +
Sbjct: 412 GSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQ 471
Query: 299 GIRKIPAYSLIE 310
K+P S IE
Sbjct: 472 KSYKVPGCSWIE 483
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 38/285 (13%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNEATYVS 68
++ A L+F+++ + +T++I + + A+ +F++M+ + RPN +
Sbjct: 54 NLTYARLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRS-QPPRPNHFIFPH 112
Query: 69 VLSSC-------------------------AGLVNE-----GGLYLGKQVHGYILRNEIV 98
L +C LV+ GGL K+V +
Sbjct: 113 ALKTCPESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDR--- 169
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
SV TA++ + +VG +E A+RVF M+ +DV +WNA+I+ N + + +F M
Sbjct: 170 -SVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRM 228
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
+ R N +T V L+AC +++LG H + K + +VD+ G+ G
Sbjct: 229 VFECNRPNGVTVVCALSACGHMGMLQLG-RWIHGYVYKNGLAFDSFVLNALVDMYGKCGS 287
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
L +A++ P E + +++ +HG D + +++E
Sbjct: 288 LGKARKVFEMNP-EKGLTSWNSMINCFALHGQSDSAIAIFEQMVE 331
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 197/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YV+ + SA LFE M KRDVVSWT++I G+ ++G EA+ VF+NM+ +V
Sbjct: 157 LLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMV-HVGEAI 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT V+VLS+C+ + L+LG+ VH YI R+++++ +G ALI++Y K G +E
Sbjct: 216 PNEATLVNVLSACSSI---SALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEM 272
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI +FK+ KD+ +W+ +IS LA N K+A V+F M G+ +++TF+ +L+AC+
Sbjct: 273 AILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSH 332
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+ G+ +F +M + + P M HY C+VD+ G+AGLL EA+ F++ MP E + V G
Sbjct: 333 GGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWG 392
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++HG +V LL + G + +LSN +A +RWN A D+R AM G
Sbjct: 393 ALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRG 452
Query: 300 IRKIPAYSLIE 310
++K+ S IE
Sbjct: 453 LKKMAGRSWIE 463
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 10/191 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ +GD+ SA L+F+++ DVVSWTSII+G + G EA+ F +M VRPN
Sbjct: 63 YILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN-----VRPNST 117
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V+ LS+C+ L L LGK +HG +R +V + AL+D Y + L A +F
Sbjct: 118 TLVTALSTCSSL---RCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLF 174
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLV 183
+ M +DV +W MI A + +EA+ +F M G NE T V VL+AC+ +
Sbjct: 175 EKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISAL 234
Query: 184 ELGLELFHSML 194
LG + HS +
Sbjct: 235 HLG-QWVHSYI 244
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 15/203 (7%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ N T+ L +C L G ++H +++++ + +F+ +L+ Y G +
Sbjct: 14 ISHNHFTFTYALKACCFLHQTQK---GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVS 70
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F S+ DV +W ++IS L+ EKEAL F M +R N T V L+ C+
Sbjct: 71 SASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN---VRPNSTTLVTALSTCS 127
Query: 179 RAQLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ ++LG + H + + E I+E+ ++D R L A+ MP + D
Sbjct: 128 SLRCLKLG-KAIHGLRMRTLNEENVILEN--ALLDFYVRCAYLRSAENLFEKMP-KRDVV 183
Query: 237 VLGALLGACKIHGAVDLCHEVGR 259
++G G LC E R
Sbjct: 184 SWTTMIGGYAQSG---LCEEAVR 203
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K ++D+A +F + R +VSW ++I GF +NG EA+ F M V+
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART--VK 435
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYVSV+++ A L + K +HG ++RN + +VF+ TAL+D+Y K G + A
Sbjct: 436 PDTFTYVSVITAIAEL---SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V TWNAMI ++ K AL +F+EM++ +R N +TF++V++AC+ +
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHS 552
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ FH M + + P M+HYG +VDLLGRAG L+EA +F+ MP +P +V GA
Sbjct: 553 GLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+IH V+ +V RL EL P+ G +V+L+NI+ W + +R +M+ G+
Sbjct: 613 MLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 301 RKIPAYSLIE 310
RK P S++E
Sbjct: 673 RKTPGCSMVE 682
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + +A LLF+ ML+R+VVSW S+I+ +V+N EA+ +F+ M+ V+
Sbjct: 277 LVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG--VK 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + + + L +CA L G L G+ +H + E+ +V + +LI +Y K ++ A
Sbjct: 335 PTDVSVMGALHACADL---GDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + + + +WNAMI A N R EAL F +M+ + ++ + T+V+V+TA A
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIA 449
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 107/182 (58%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A +F+ M +RD+VSW +I+ G+ +NG A+ + N+M NL +P+
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV-NLMCEENL-KPSFI 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL + + L + +GK++HGY +R V + TAL+D+Y K G L+ A +F
Sbjct: 238 TIVSVLPAVSAL---RLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ ++V +WN+MI + N KEA+V+F +M ++G++ +++ + L ACA +E
Sbjct: 295 DGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLE 354
Query: 185 LG 186
G
Sbjct: 355 RG 356
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 116/224 (51%), Gaps = 8/224 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + + G +D A +FE + K+ V + +++ GF + +A+ F M + V
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDE--VE 132
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + +L C +E L +GK++HG ++++ L +F T L ++Y K + A
Sbjct: 133 PVVYNFTYLLKVCG---DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ +WN +++ + N + AL M + M E+ L+ + IT V+VL A +
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSAL 249
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+L+ +G E+ ++M F+ ++ +VD+ + G L A+
Sbjct: 250 RLIRIGKEIHGYAMRAGFD--SLVNIATALVDMYAKCGSLKTAR 291
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDM+ A +LF+ M +++VSWT I++G+ G +AI F+ M ++
Sbjct: 80 MVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQM--EEAGLK 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S+L+SCA G L LGK+VH I R SV + AL+D+Y K G ++RA
Sbjct: 138 PDDGTVISILASCA---ESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRA 194
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M KD+ +WN M+ LA + ++AL +F M+++G R +++T VAVL AC A
Sbjct: 195 LSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHA 254
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F++M + +VP +EHYGC+VDLLGR G L EA ++SMP EP+ + G
Sbjct: 255 GFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGT 314
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H AV L EV L +L+P G Y +LSNI A W+ ++R M GI
Sbjct: 315 LLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGI 374
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 375 QKPSGASSIE 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G +K G++ A LF+ M +D VSW +I++G+V+ G +A +F++M
Sbjct: 18 MIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESM-------- 69
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P RN + S ++ Y K G +E A
Sbjct: 70 PE-------------------------------RNVVSWST-----MVSGYCKAGDMEMA 93
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +K++ +W ++S A K+A+ F++M+E GL+ ++ T +++L +CA +
Sbjct: 94 RMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAES 153
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ LG + H+ + + + +VD+ + G + A M + D
Sbjct: 154 GLLGLGKRV-HTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNC 211
Query: 241 LLGACKIHG 249
+L +HG
Sbjct: 212 MLQGLAMHG 220
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+R+FK M +DV +WN+MI L EA +FDEM K + +++ +L +A
Sbjct: 1 MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYVKA 56
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LF SM + V + +V +AG + A+ MP
Sbjct: 57 GEMNKAFGLFESMPERNVV-----SWSTMVSGYCKAGDMEMARMLFDRMP 101
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 196/315 (62%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G+++NG ++ A +F M + ++++WT++I+G ++G EAI F+ M
Sbjct: 1586 VILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAG 1645
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+RP+ A+ SVL +C + + L+ G+ +HG+I R+E LSV + T+L+D+Y K G
Sbjct: 1646 --IRPSIASITSVLLACTDIPS---LWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGS 1700
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A +VF M K++ +NAMIS+ A + + EAL +F ++++G+ + ITF ++L+A
Sbjct: 1701 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSA 1760
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A LV GL LF M+ K + PIMEHYGCVV LL R G L EA + +MPF+PDA
Sbjct: 1761 CSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAH 1820
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LG+LL AC+ H ++L + + L +L+P + G YV LSN +A RW +++R M
Sbjct: 1821 ILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 1880
Query: 297 EAGIRKIPAYSLIEA 311
G+RK P S I+
Sbjct: 1881 VRGLRKNPGCSWIQT 1895
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 5/188 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F++M++++VV+W S+I G+V+NG EAI VF +M V +
Sbjct: 1318 LVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM--RVEGIE 1375
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T S LS+ A L L GKQ H + N + L +G+++I+ Y KVG +E A
Sbjct: 1376 PTRVTVASFLSASANL---DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDA 1432
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M+ KDV TWN +ISS + + +AL M M+ + LR + +T ++L+A A
Sbjct: 1433 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 1492
Query: 181 QLVELGLE 188
++LG E
Sbjct: 1493 SNIKLGKE 1500
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 13/256 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A+ LF + R+V SW +I+ R G +A+ F M N V P+
Sbjct: 1221 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENG--VFPDNF 1278
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+VL +C L G LGK VHGY+L+ VF+ ++L+D+YGK G LE A +VF
Sbjct: 1279 VLPNVLKACGSLQLIG---LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 1335
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-LV 183
SMV K+V TWN+MI N +EA+ +F +M+ +G+ +T + L+A A L+
Sbjct: 1336 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 1395
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E ++L ++ I+ +++ + GL+ +A E + S E D L+
Sbjct: 1396 EGKQGHAIAILNSLDLDNILG--SSIINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLIS 1452
Query: 244 ACKIH----GAVDLCH 255
+ H A+++CH
Sbjct: 1453 SYVQHHQVGKALNMCH 1468
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 9/248 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ A L+F ML++DVV+W +I+ +V++ G+A+ + ++M + NL R
Sbjct: 1419 IINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMC-HLMRSENL-R 1476
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T S+LS+ A N + LGK+ H Y +R + V + ++ID+Y K ++ A
Sbjct: 1477 FDSVTLSSILSASAVTSN---IKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDA 1533
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF S +D+ WN ++++ A EAL +F +M+ + N I++ +V+ R
Sbjct: 1534 RKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRN 1593
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
V ++F S + P + + ++ L ++G EA F + M P +
Sbjct: 1594 GQVNEAKDMF-SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIAS 1652
Query: 238 LGALLGAC 245
+ ++L AC
Sbjct: 1653 ITSVLLAC 1660
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Query: 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
I+ ++G E++ + M + P Y +L C V E L+ G+Q+H I
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPE--IYGELLQGC---VYERALHTGQQIHARI 1200
Query: 93 LRNEIVLSV--FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
L+N + ++ T L+ Y K E A+R+F + +++V +W A++ ++
Sbjct: 1201 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 1260
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
AL+ F EM+E G+ + VL AC QL+ LG + H + K + +V
Sbjct: 1261 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGV-HGYVLKMGFGACVFVSSSLV 1319
Query: 211 DLLGRAGLLSEAKEFMRSM 229
D+ G+ G+L +A++ SM
Sbjct: 1320 DMYGKCGVLEDARKVFDSM 1338
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 196/315 (62%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G+++NG ++ A +F M + ++++WT++I+G ++G EAI F+ M
Sbjct: 491 VILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAG 550
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+RP+ A+ SVL +C + + L+ G+ +HG+I R+E LSV + T+L+D+Y K G
Sbjct: 551 --IRPSIASITSVLLACTDIPS---LWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGS 605
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A +VF M K++ +NAMIS+ A + + EAL +F ++++G+ + ITF ++L+A
Sbjct: 606 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSA 665
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A LV GL LF M+ K + PIMEHYGCVV LL R G L EA + +MPF+PDA
Sbjct: 666 CSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAH 725
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LG+LL AC+ H ++L + + L +L+P + G YV LSN +A RW +++R M
Sbjct: 726 ILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 785
Query: 297 EAGIRKIPAYSLIEA 311
G+RK P S I+
Sbjct: 786 VRGLRKNPGCSWIQT 800
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 5/188 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F++M++++VV+W S+I G+V+NG EAI VF +M V +
Sbjct: 223 LVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM--RVEGIE 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T S LS+ A L L GKQ H + N + L +G+++I+ Y KVG +E A
Sbjct: 281 PTRVTVASFLSASANL---DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDA 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M+ KDV TWN +ISS + + +AL M M+ + LR + +T ++L+A A
Sbjct: 338 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 397
Query: 181 QLVELGLE 188
++LG E
Sbjct: 398 SNIKLGKE 405
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 13/256 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A+ LF + R+V SW +I+ R G +A+ F M N V P+
Sbjct: 126 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENG--VFPDNF 183
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+VL +C L G LGK VHGY+L+ VF+ ++L+D+YGK G LE A +VF
Sbjct: 184 VLPNVLKACGSLQLIG---LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 240
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-LV 183
SMV K+V TWN+MI N +EA+ +F +M+ +G+ +T + L+A A L+
Sbjct: 241 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E ++L ++ I+ +++ + GL+ +A E + S E D L+
Sbjct: 301 EGKQGHAIAILNSLDLDNILG--SSIINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLIS 357
Query: 244 ACKIH----GAVDLCH 255
+ H A+++CH
Sbjct: 358 SYVQHHQVGKALNMCH 373
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 9/248 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ A L+F ML++DVV+W +I+ +V++ G+A+ + ++M + NL R
Sbjct: 324 IINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMC-HLMRSENL-R 381
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T S+LS+ A N + LGK+ H Y +R + V + ++ID+Y K ++ A
Sbjct: 382 FDSVTLSSILSASAVTSN---IKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDA 438
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF S +D+ WN ++++ A EAL +F +M+ + N I++ +V+ R
Sbjct: 439 RKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRN 498
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
V ++F S + P + + ++ L ++G EA F + M P +
Sbjct: 499 GQVNEAKDMF-SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIAS 557
Query: 238 LGALLGAC 245
+ ++L AC
Sbjct: 558 ITSVLLAC 565
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 8/204 (3%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
S+ I+ ++G E++ + M + P Y +L C V E L+ G+Q
Sbjct: 46 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPE--IYGELLQGC---VYERALHTGQQ 100
Query: 88 VHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+H IL+N + ++ T L+ Y K E A+R+F + +++V +W A++
Sbjct: 101 IHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRM 160
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
++AL+ F EM+E G+ + VL AC QL+ LG + H + K +
Sbjct: 161 GFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGV-HGYVLKMGFGACVFV 219
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
+VD+ G+ G+L +A++ SM
Sbjct: 220 SSSLVDMYGKCGVLEDARKVFDSM 243
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 193/306 (63%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + A +FE +D++ W S+I G+ G F A F+ + G + RPN
Sbjct: 379 YANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEH--RPNFI 436
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L C + G L GK++HGY+ ++ + L+V +G +LID+Y K G LE +VF
Sbjct: 437 TVVSILPICTQM---GALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVF 493
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K M++++V T+N MIS+ S+ + ++ L +++MKE+G R N++TF+++L+AC+ A L++
Sbjct: 494 KQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLD 553
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G L++SM+ + + P MEHY C+VDL+GRAG L A +F+ MP PDA+V G+LLGA
Sbjct: 554 RGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGA 613
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++H V+L + R+L+L+ G YV+LSN++A +RW + +R + + G+ K P
Sbjct: 614 CRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKP 673
Query: 305 AYSLIE 310
S I+
Sbjct: 674 GSSWIQ 679
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YV G + A L F + + +++W +I+ G V G F +AI + +M+ + V
Sbjct: 73 LVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHG--VT 130
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY VL +C+ L L LG+ VH + + +V++ A+ID++ K G +E A
Sbjct: 131 PDNYTYPLVLKACSSL---HALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDA 186
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F+ M +D+ +W A+I N EAL++F +M+ +GL + + ++L AC R
Sbjct: 187 RRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRL 246
Query: 181 QLVELGLEL 189
+ V+LG+ L
Sbjct: 247 EAVKLGMAL 255
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD A +F +M+ DVVSW+++I G+ +N + E+ ++ M+ NV L
Sbjct: 274 VIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMI-NVGLAT 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N SVL + L L GK++H ++L+ ++ V +G+ALI +Y G ++ A
Sbjct: 333 -NAIVATSVLPALGKL---ELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEA 388
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ KD+ WN+MI + A F + R N IT V++L C +
Sbjct: 389 ESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQM 448
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H + K + + ++D+ + G L ++ + M + +
Sbjct: 449 GALRQGKEI-HGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVR-NVTTYNT 506
Query: 241 LLGACKIHG 249
++ AC HG
Sbjct: 507 MISACGSHG 515
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 5/194 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K G ++ A +FE M RD+ SWT++I G + NG EA+ +F+ M +
Sbjct: 173 VIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEG--LM 230
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S+L +C L + LG + +R+ +++ A+ID+Y K G A
Sbjct: 231 PDSVIVASILPACGRL---EAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEA 287
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV DV +W+ +I+ + N +E+ ++ M GL N I +VL A +
Sbjct: 288 HRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKL 347
Query: 181 QLVELGLELFHSML 194
+L++ G E+ + +L
Sbjct: 348 ELLKQGKEMHNFVL 361
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
+ L+++Y G L+ A F+++ K + WNA++ L + +A+ + M + G+
Sbjct: 70 ASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV 129
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ T+ VL AC+ ++LG + +M GK + ++ V+D+ + G + +A+
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQ--CAVIDMFAKCGSVEDAR 187
Query: 224 EFMRSMPFEPDASVLGALLGA 244
MP AS + G
Sbjct: 188 RMFEEMPDRDLASWTALICGT 208
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V G M A LF+ M R +VSWT++I+G+ R G + +A+ VF+ M + V
Sbjct: 191 IISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQM--QIVGVE 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +SVL +CA L G L +GK +H Y RN ++ + AL+++Y K GC+ +A
Sbjct: 249 PDEISIISVLPACAQL---GALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M DV +W+ MI LA++ + +EA+ +F MK+ + N ITF+ +L+ACA A
Sbjct: 306 YQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHA 365
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
GL F SM + + P +EHYGC+VD+LGRAG LS+A + + MP +PD+ + G+
Sbjct: 366 GFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGS 425
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ H +D+ L EL+P G YV+LSNI+A L +W+ + +RK + +
Sbjct: 426 LLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSM 485
Query: 301 RKIPAYSLIE 310
+K P SLI+
Sbjct: 486 KKTPGSSLID 495
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 46/326 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-----GN 55
M+D K D+ A LLF+ + + + + ++I N + AI +K M+ +
Sbjct: 52 MVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPES 111
Query: 56 VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
N + P+ T+ V+ SC+GLV LGKQVH ++ + ++ M ALID+Y K
Sbjct: 112 ENPIFPDRFTFPFVIKSCSGLVCYN---LGKQVHAHLCKFGPKSNITMENALIDMYTKCA 168
Query: 116 CLERAIRVFKSMVIKDVCTWN-------------------------------AMISSLAS 144
L A +VF MV +D +WN AMIS
Sbjct: 169 SLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTR 228
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+AL +F +M+ G+ +EI+ ++VL ACA+ +E+G + H + ++
Sbjct: 229 LGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVG-KWIHMYCDRNGLLRKTS 287
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL--L 262
++++ + G + +A + M + D ++G HG E+ +R+
Sbjct: 288 ICNALMEMYSKCGCIGQAYQLFDQMS-KGDVISWSTMIGGLANHGKAREAIELFKRMKKA 346
Query: 263 ELQPKHCGRYVVLSN-IHAGLERWNR 287
+++P +LS HAG WN
Sbjct: 347 KIEPNGITFLGLLSACAHAGF--WNE 370
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+R E +V +L +C +V K +H ++++ + S F+ T ++D+ K L
Sbjct: 10 IRELENFFVPILQNCKNIVEL------KSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLG 63
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-------KEKGLRANEITFV 171
A +FK + + +NAMI + N A++ + EM E + + TF
Sbjct: 64 YASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFP 123
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
V+ +C+ LG ++ H+ L KF + ++D+ + L +A + M
Sbjct: 124 FVIKSCSGLVCYNLGKQV-HAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGM-V 181
Query: 232 EPDA 235
E DA
Sbjct: 182 ERDA 185
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G M+SA LF++M R +VSWT++I G+ R GC+G+A+ VF+ M + +
Sbjct: 183 LIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREM--QMVGIE 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + ++VL +CA L G L +GK +H Y +N + + ALI++Y K GC++ A
Sbjct: 241 PDEISIIAVLPACAQL---GALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +V KDV +W+ MI LA++ + EA+ +F+EM + + NEITF+ VL AC+
Sbjct: 298 WNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHT 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL+ F M + + P +EHYGC++DLLGR+G L +A + + MP +PD+ + +
Sbjct: 358 GLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNS 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+IH + + ++L+EL+P+ G YV+L+N++A +W +++RK + I
Sbjct: 418 LLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRI 477
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 478 KKTPGSSSIE 487
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 37/281 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN-VNLV 59
M+D G + A LLF+ +L ++ ++ +II + N AI VF M+ + N V
Sbjct: 48 MLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSV 107
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P++ T+ V+ SC G++ LG QVHG + + ALID+Y K G L
Sbjct: 108 FPDKFTFPFVIKSCTGILCH---RLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTN 164
Query: 120 AIRVFKSMVIKDVCTWNAMISSLA-----SNSRE-------------------------- 148
A +VF+ M +DV +WN++I +++RE
Sbjct: 165 ACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCY 224
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
+AL +F EM+ G+ +EI+ +AVL ACA+ +E+G + H K +
Sbjct: 225 GDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG-KWIHMYADKNGFLRKTGICNA 283
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++++ + G + EA + E D ++G HG
Sbjct: 284 LIEMYAKCGCIDEAWNLFDQL-VEKDVISWSTMIGGLANHG 323
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 91/195 (46%), Gaps = 14/195 (7%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+R E Y++ L +C + K++H ++++ + S F+ T ++D +G +
Sbjct: 5 FIRELENRYITSLKNCFKITQL------KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHV 58
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM---KEKGLRANEITFVAVL 174
A +FK ++ ++ T+NA+I + A N A+ +F +M + ++ TF V+
Sbjct: 59 SYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVI 118
Query: 175 TACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+C LG+++ H ++ KF + I E+ ++D+ + G L+ A + M
Sbjct: 119 KSCTGILCHRLGMQV-HGLVYKFGADFHCITEN--ALIDMYTKFGDLTNACKVFEEMSHR 175
Query: 233 PDASVLGALLGACKI 247
S + G K+
Sbjct: 176 DVISWNSLIFGYVKL 190
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+V+ G + A LF M ++DV+SW +II+G V+NG +A+ FK + G L R
Sbjct: 206 MIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKEL-GEQKL-R 263
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEA VS+L++ A L G L GK++H ++ +GTAL+D+Y K GC++ +
Sbjct: 264 PNEAILVSLLAAAAQL---GTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDES 320
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KD +WN MI LA++ +EAL +F++ +G +TF+ VLTAC+RA
Sbjct: 321 RFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRA 380
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F M + + P MEHYGC+VDLL RAG + +A E + MP PD + +
Sbjct: 381 GLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWAS 440
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LG+C++HG ++L E+G +L+++ P H G YV L+ I A L +W + +R+ M E
Sbjct: 441 VLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNS 500
Query: 301 RKIPAYSLIEA 311
KI +SLIEA
Sbjct: 501 NKIAGWSLIEA 511
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 40/271 (14%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D A+ ++ ++ V + ++I FV+ +I ++ +M + + PN+ T VL
Sbjct: 83 DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSF-VAAPNKHTLTFVLQ 141
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF------- 124
+C+ N + G QV ++++ V VF+ ALI LY +E A +VF
Sbjct: 142 ACS---NAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSR 198
Query: 125 -----KSMVI--------------------KDVCTWNAMISSLASNSREKEALVMFDEMK 159
SM++ KDV +W +IS N ++AL F E+
Sbjct: 199 DVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELG 258
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGL 218
E+ LR NE V++L A A+ +E G + HS+ P+ G +VD+ + G
Sbjct: 259 EQKLRPNEAILVSLLAAAAQLGTLEYGKRI-HSIANSLR-FPMTASLGTALVDMYAKCGC 316
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ E++ MP E D ++ HG
Sbjct: 317 IDESRFLFDRMP-EKDKWSWNVMICGLATHG 346
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 190/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY GD++SA +F+ ML+RDV+SW ++I G+V+NG + +AI VF M V V
Sbjct: 185 MVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQ-KVGGVV 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T VSVLS+CA + G L G+ + ++ L++++G ALID+Y K G +E A
Sbjct: 244 PDDVTLVSVLSACAHV---GALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV +W+ MI ++ EA + +M E G++ NE+TF+ +L+AC+ A
Sbjct: 301 RRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHA 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ELF M+ ++ +VP + HYGCV+DLL RAG L EA++ + SMP EP+ V GA
Sbjct: 361 GLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGA 420
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IH V + LLEL ++ G YV ++ A + R + A + M GI
Sbjct: 421 LLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGI 480
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 481 IKDPGCSKIE 490
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 141/319 (44%), Gaps = 44/319 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I N ++ A L+F + +V SW +II + G + A+ F + +
Sbjct: 51 LIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPN 110
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE Y S++ +CAGL + G +VH ++++ + ++ +GT+L+D+Y K A
Sbjct: 111 PNEYIYTSLIKACAGL---EAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASA 167
Query: 121 IRVFKSMVIKDVCTW-------------------------------NAMISSLASNSREK 149
+VF M ++DV +W NAMI N +
Sbjct: 168 GQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYS 227
Query: 150 EALVMFDEMKE-KGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHY 206
+A+ +F EM++ G+ +++T V+VL+ACA ++ G ++ F G+ + +
Sbjct: 228 DAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGN-- 285
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--L 264
++D+ + G + EA+ M E D ++ HG D ++LE +
Sbjct: 286 -ALIDMYAKCGTMEEARRIFDGMR-ERDVISWSTMICGSGTHGDADEAFGYYSKMLECGV 343
Query: 265 QPKHCGRYVVLSNI-HAGL 282
+P +LS HAGL
Sbjct: 344 KPNEVTFMGLLSACSHAGL 362
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ AI FE M R++VSW +++ G+V+N +A+ +F+ M+ N V+
Sbjct: 180 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQ 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L GKQ+H + ++ + ++ +GT+L+ +Y K G L A
Sbjct: 239 PNASTLSSVLLGCSNL---SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +DV WNAMIS A + KEA+ +F+ MK++G+ N ITFVAVLTAC
Sbjct: 296 CKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHT 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G+ F M + + P ++HY C+VDLL RAG L A + +RSMPFEP S G
Sbjct: 356 GLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGT 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ +L+E P+ G YV L+NI+AG +W+ + +R+ M + +
Sbjct: 416 LLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAV 475
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 476 VKTPGYSWIE 485
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 19/252 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + +GD D A LF +M RDVVSW ++++G ++G EA VF M VR
Sbjct: 86 LLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP-----VR 140
Query: 61 PNEATYVSVLS--SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N ++ +++S +C+ ++ + + + VL TA++ Y +G +
Sbjct: 141 -NSVSWNAMVSGFACSRDMSAAEEWFRNAPE----KGDAVL----WTAMVSGYMDIGNVV 191
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTAC 177
+AI F++M ++++ +WNA+++ NS +AL +F M +E ++ N T +VL C
Sbjct: 192 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + G ++ H K + + +V + + G LS A + M D
Sbjct: 252 SNLSALGFGKQI-HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVA 309
Query: 238 LGALLGACKIHG 249
A++ HG
Sbjct: 310 WNAMISGYAQHG 321
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 193/302 (63%), Gaps = 5/302 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G ++ A +F+ M K D VSW+++I G+VR G +AI +F+ M + V P+E T VS
Sbjct: 63 GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREM--QIKGVCPDEITMVS 120
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VLS+C GL G L LGK V Y+ + + +V + ALID++ K G +++A +F+SM
Sbjct: 121 VLSACTGL---GALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR 177
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+++ +W ++I LA + R EA+ +F+EM G+ +++ F+ +L+AC+ + LV+ G
Sbjct: 178 ERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKR 237
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
F SM F +VP +EHYGC+VD+L RAGL+ EA +F++ MP +P+ V L+ AC+ H
Sbjct: 238 YFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAH 297
Query: 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308
G + L ++ R+L+ +P H YV+LSNI+A + W + T +R+AM G++KIP ++
Sbjct: 298 GELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357
Query: 309 IE 310
IE
Sbjct: 358 IE 359
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 9/193 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY----GKVGC 116
PN+ TY VL +CAG+ G L LGK VHG +++ V + L+ +Y G G
Sbjct: 8 PNKFTYPFVLKACAGI---GNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGG 64
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF M D +W+AMI R +A+ +F EM+ KG+ +EIT V+VL+A
Sbjct: 65 IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C +ELG + S + K V +E ++D+ + G + +A RSM E +
Sbjct: 125 CTGLGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-ERNIV 182
Query: 237 VLGALLGACKIHG 249
+++G +HG
Sbjct: 183 SWTSVIGGLAMHG 195
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K GD+D A LF +M +R++VSWTS+I G +G EA+ VF+ M+ + V
Sbjct: 156 LIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG--VT 213
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ ++ +LS+C +GLV++G Y + IV + ++D+ + G ++
Sbjct: 214 PDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDF----SIVPKIEHYGCMVDMLCRAGLVK 269
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A++ + M I + W +I++
Sbjct: 270 EALKFVQEMPIDPNPVVWRTLINA 293
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ AI FE M R++VSW +++ G+V+N +A+ +F+ M+ N V+
Sbjct: 229 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQ 287
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L GKQ+H + ++ + ++ +GT+L+ +Y K G L A
Sbjct: 288 PNASTLSSVLLGCSNL---SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 344
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +DV WNAMIS A + KEA+ +F+ MK++G+ N ITFVAVLTAC
Sbjct: 345 CKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHT 404
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G+ F M + + P ++HY C+VDLL RAG L A + +RSMPFEP S G
Sbjct: 405 GLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGT 464
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ +L+E P+ G YV L+NI+AG +W+ + +R+ M + +
Sbjct: 465 LLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAV 524
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 525 VKTPGYSWIE 534
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 19/252 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + +GD D A LF +M RDVVSW ++++G ++G EA VF M VR
Sbjct: 135 LLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP-----VR 189
Query: 61 PNEATYVSVLS--SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N ++ +++S +C+ ++ + + + VL TA++ Y +G +
Sbjct: 190 -NSVSWNAMVSGFACSRDMSAAEEWFRNAPE----KGDAVL----WTAMVSGYMDIGNVV 240
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTAC 177
+AI F++M ++++ +WNA+++ NS +AL +F M +E ++ N T +VL C
Sbjct: 241 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 300
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + G ++ H K + + +V + + G LS A + M D
Sbjct: 301 SNLSALGFGKQI-HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVA 358
Query: 238 LGALLGACKIHG 249
A++ HG
Sbjct: 359 WNAMISGYAQHG 370
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 186/299 (62%), Gaps = 5/299 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI VK GD + A LF M +R+V SWTS+I G+ + G EAI +F M + L+
Sbjct: 185 MIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEM-EDAGLL- 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V+VL +CA + G L LG+++H + R+ ++ + LID+Y K GCLE A
Sbjct: 243 PNEVTVVAVLVACADM---GNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F +M + V +W+AMI+ LA++ R ++AL +F++M G++ N +TF+ +L AC+
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+VE G + F SM + +VP +EHYGC+VDL RAGLL EA EF+ +MP P+ V GA
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLG CK+H V L E R L +L P + G YVVLSNI+A RW +RK M + G
Sbjct: 420 LLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 38/273 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
N A L+F+ + +V W + + F +AI +F + + P+ T
Sbjct: 60 NSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFD--ISPDHYTCS 117
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C+ L++ + GK VHGY+ + + ++F+ ++ LY G + A +VF M
Sbjct: 118 FVLKACSRLLD---VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174
Query: 128 VIKDVCTWNAMISSL-------------------------------ASNSREKEALVMFD 156
+DV TWN MI+ L A + KEA+ +F
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
EM++ GL NE+T VAVL ACA + LG + H + + ++D+ +
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI-HDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G L +A +M E A++ HG
Sbjct: 294 GCLEDACRIFDNME-ERTVVSWSAMIAGLAAHG 325
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GDM + +F+ M RDVVSWT +I G+ + +A+ F+ M V
Sbjct: 150 LLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQM--QYAGVV 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V+ LS+CA G L +G +H +I R+ V +GT+LID+YGK G +E
Sbjct: 208 PNHVTMVNALSACADF---GALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEG 264
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+SM K+V TWN++I LA EA+ F M+++G++A+E+T +AVL AC+ +
Sbjct: 265 LVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHS 324
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V++G ++F S++ GK+E P ++HY CV+DLL RAG+L EA E M MPFEP+ + G
Sbjct: 325 GMVQMGRQIFGSLMNGKYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWG 384
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A L C+ HG ++L R+L+EL+P + YV+LSNI+A + RW+ +R+ M E G
Sbjct: 385 AFLAGCRAHGDLELSEFAARKLVELEPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKEGG 444
Query: 300 IRKIPAYSLIE 310
+ K S IE
Sbjct: 445 LTKDLGCSSIE 455
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 12/215 (5%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F + K V S+I F N ++ +M N L PN T+ +L S A
Sbjct: 66 FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSIL--PNNFTFPFLLKSLADF- 122
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
GL G+ +H ++++ +++ +L+++Y G + +RVF M +DV +W
Sbjct: 123 --KGLSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTV 180
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL---ELFHSML 194
+I+ S R +AL+ F++M+ G+ N +T V L+ACA +E+G+ E
Sbjct: 181 LITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSG 240
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+F+V+ ++D+ G+ G + E RSM
Sbjct: 241 WEFDVILGTS----LIDMYGKCGRIEEGLVVFRSM 271
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G M A +F+ M KRDVVSWT+++ G+ G E+ FK M+ V
Sbjct: 388 LINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQG--VE 445
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ TY+ VL +C+ N L GK++H +++ I + + AL+ +Y K G +E A
Sbjct: 446 ANKITYMCVLKACS---NPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDA 502
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
IRV + M +DV TWN +I LA N R EAL F+ MK + +R N TFV V++AC
Sbjct: 503 IRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVR 562
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + +VP +HY C+VD+L RAG L EA++ + +MPF+P A++ GA
Sbjct: 563 NLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGA 622
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V++ + + L+L+P++ G YV LS I+A W LRK M E G+
Sbjct: 623 LLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGV 682
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 683 KKEPGRSWIE 692
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 144/299 (48%), Gaps = 42/299 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+K G + A +FE + RDV++W ++I G V +G EA +F M+ V P+
Sbjct: 291 YIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC--VAPDRV 348
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+++LS+CA GGL GK++H +++ +V V G ALI++Y K G ++ A +VF
Sbjct: 349 TYLAILSACA---RPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVF 405
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +W A++ A + E+ F +M ++G+ AN+IT++ VL AC+ ++
Sbjct: 406 DRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALK 465
Query: 185 LGLELFHSML--GKFEVVPI----MEHY---GCVVDLL---------------------- 213
G E+ ++ G F + + M Y G V D +
Sbjct: 466 WGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLA 525
Query: 214 --GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270
GR + E M+S P+A+ ++ AC++ V E GRR K G
Sbjct: 526 QNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLV----EEGRRQFASMRKDYG 580
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A +F+ M RD VSWT++ + +G E++ + M+ VR
Sbjct: 186 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEG--VR 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY++VLS+C L L GKQ+H I+ +E V + TAL +Y K G ++ A
Sbjct: 244 PSRITYMNVLSACGSL---AALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV WN MI L + + +EA MF M ++ + + +T++A+L+ACAR
Sbjct: 301 REVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARP 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H+ K +V + ++++ +AG + +A++ MP + D A
Sbjct: 361 GGLACGKEI-HARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTA 418
Query: 241 LLG 243
L+G
Sbjct: 419 LVG 421
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 131/259 (50%), Gaps = 7/259 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV G ++ A LF+ + VVSW +I+G+ G EA +F +M L P++
Sbjct: 89 YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLF-TLMQQEGL-EPDKF 146
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VS+LS+C+ + L G++VH ++ + + +G ALI +Y K G + A RVF
Sbjct: 147 TFVSILSACS---SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF 203
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M +D +W + + A + +E+L + M ++G+R + IT++ VL+AC +E
Sbjct: 204 DAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALE 263
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G ++ H+ + + E + + + + G + +A+E +P D ++G
Sbjct: 264 KGKQI-HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGG 321
Query: 245 CKIHGAVDLCHEVGRRLLE 263
G ++ H + R+L+
Sbjct: 322 LVDSGQLEEAHGMFHRMLK 340
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
YV +L SC V L +GKQVH +ILR + +V++ L+ LY G + A R+F
Sbjct: 47 YVKLLQSC---VKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFD 103
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
K V +WN MIS A +EA +F M+++GL ++ TFV++L+AC+ +
Sbjct: 104 KFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNW 163
Query: 186 GLEL 189
G E+
Sbjct: 164 GREV 167
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 191/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ A+ F M R++VSW +++ G+V+N G+A+ VFK M+ + +V+
Sbjct: 172 MVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDA-IVQ 230
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L G+QVH + ++ + S+ +GT+L+ +Y K G L+ A
Sbjct: 231 PNPSTLSSVLLGCSNL---SALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDA 287
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KD+ WNAMIS A + ++A+ +F++MK++G+ + IT +AVLTAC
Sbjct: 288 CKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHT 347
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G++ F +M + + P ++HY C+VDLL RAGLL A + SMPFEP S G
Sbjct: 348 GLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGT 407
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ R+L+E P++ G YV L+NI+A RW+ + +R+ M + +
Sbjct: 408 LLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAV 467
Query: 301 RKIPAYSLIE 310
K P YS +E
Sbjct: 468 VKTPGYSWME 477
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+D A +F M RDV SW ++++G +NG EA +F+ M N ++ +
Sbjct: 86 GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR------NAVSWNA 139
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
++++ A + G + RN + TA++ Y G +++A+ F++M
Sbjct: 140 MVAARASSGDMGAAE-------NLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAM 192
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQLVELG 186
++++ +WNA+++ NSR +AL +F M E + + N T +VL C+ + G
Sbjct: 193 PVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFG 252
Query: 187 LEL 189
++
Sbjct: 253 RQV 255
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY +L+ A G L +++ I + V L+ + G ++ A RVF
Sbjct: 40 TYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSY----NTLLSCHFACGDIDGAWRVF 95
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M ++DV +WN M+S L+ N +EA MF M + N +++ A++ A A + +
Sbjct: 96 STMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSWNAMVAARASSGDMG 151
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LF + K + + + +V G + +A E+ R+MP
Sbjct: 152 AAENLFRNAPEKTDAI----LWTAMVSGYMDTGNVQKAMEYFRAMP 193
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K+G+M+SA LF+ +D+VSW ++I G+V EA+ +F M G
Sbjct: 210 MITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGEC-- 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
P+E T +S+LS+CA L G L G++VH I+ N+ LS +G AL+D+Y K G + +
Sbjct: 268 PDEVTMLSLLSACADL---GDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGK 324
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF + KDV +WN++IS LA + +E+L +F EMK + +E+TFV VL AC+
Sbjct: 325 AVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSH 384
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V+ G FH M K+++ P + H GCVVD+LGRAGLL EA F+ SM EP+A V
Sbjct: 385 AGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWR 444
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGACK+HG V+L +LL ++ G YV+LSN++A W+ A ++RK M + G
Sbjct: 445 SLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNG 504
Query: 300 IRKIPAYSLIEA 311
+ K S +EA
Sbjct: 505 VTKNRGSSFVEA 516
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 11/252 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +F + + D W + I G ++ A+ ++ M + V+P+ T+ VL +C
Sbjct: 60 ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQM--DQRSVKPDNFTFPFVLKAC 117
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L + G VHG +LR +V + L+ + K G L+ A +F DV
Sbjct: 118 TKLF---WVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVV 174
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
W+A+I+ A A +FDEM ++ L +++ ++T + +E LF
Sbjct: 175 AWSALIAGYAQRGDLSVARKLFDEMPKRDL----VSWNVMITVYTKHGEMESARRLFDEA 230
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
K V G V+ L R L E + M + PD + +LL AC G ++
Sbjct: 231 PMKDIVSWNALIGGYVLRNLNREAL--ELFDEMCGVGECPDEVTMLSLLSACADLGDLES 288
Query: 254 CHEVGRRLLELQ 265
+V +++E+
Sbjct: 289 GEKVHAKIIEMN 300
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 187/310 (60%), Gaps = 9/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y++ GD+DSA LF M R+VV+W S+I G+ +NG AI +FK M+ L
Sbjct: 175 MISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT- 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L G L LG V ++ N+I LS+ A+I +Y + G +E A
Sbjct: 234 PDEVTMVSVISACGHL---GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M +DV ++N +IS A++ EA+ + MKE G+ + +TF+ VLTAC+ A
Sbjct: 291 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G ++F S+ P ++HY C+VDLLGR G L +AK M MP EP A V G+
Sbjct: 351 GLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 405
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH V+L +L EL+P + G +++LSNI+A RW +R+AM + G+
Sbjct: 406 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 465
Query: 301 RKIPAYSLIE 310
+K +S +E
Sbjct: 466 KKTTGWSWVE 475
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 45/250 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K D+++A F+ M +R VVSW ++++G+ +NG EA+ +F M+G
Sbjct: 111 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLG------ 164
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
RN + + A+I Y +VG L+ A
Sbjct: 165 -------------------------------AYRNSVTWN-----AMISAYMRVGDLDSA 188
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
++F +M ++V TWN+MI+ A N + A+ +F EM K L +E+T V+V++AC
Sbjct: 189 RKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 248
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ELG + L + ++ + + ++ + R G + +AK + M D
Sbjct: 249 LGALELGNWVVR-FLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYN 306
Query: 240 ALLGACKIHG 249
L+ HG
Sbjct: 307 TLISGFAAHG 316
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 19/217 (8%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V TA++ Y KV LE A R F M + V +WNAM+S A N +EAL +FDEM
Sbjct: 104 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM- 162
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G N +T+ A+++A R ++ +LF++M G+ V + ++ + G
Sbjct: 163 -LGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT-----WNSMIAGYAQNGQS 216
Query: 220 SEAKEFMRSM----PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275
+ A E + M PD + +++ AC GA++L + V R L E Q K + +
Sbjct: 217 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK-----LSI 271
Query: 276 SNIHAGLERWNRA---TDLRKAMVEAGIRKIPAYSLI 309
S +A + ++R D ++ E R + +Y+ +
Sbjct: 272 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 308
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +++A LFE + +DVVSW ++I G+ + EA+ +F+ M+ +
Sbjct: 239 LIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE--S 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
PN+ T VS+L +CA L G + +G+ +H YI + ++ + + T+LID+Y K G +E
Sbjct: 297 PNDVTIVSILPACAHL---GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIE 353
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ K + +WNAMI A + R +F M++ G+ ++ITFV +L+AC+
Sbjct: 354 AAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACS 413
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ ++LG +F SM +++ P +EHYGC++DLLG +GL EAKE +++MP EPD +
Sbjct: 414 HSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIW 473
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL AC+ HG ++L R L++++P++ G YV+LSNI+A W+ +R +
Sbjct: 474 CSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGK 533
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 534 GMKKVPGCSSIE 545
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 140/263 (53%), Gaps = 9/263 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G++ SA +F+ + +DVVSW ++I+G+ G + EA+ +FK MM VR
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN--VR 195
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V+VLS+CA + LG+QVH +I + ++ + ALIDLY K G +E A
Sbjct: 196 PDEGTMVTVLSACA---QSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T V++L ACA
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312
Query: 181 QLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G H + K +V ++D+ + G + A + SM S
Sbjct: 313 GAIDIG-RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSW 370
Query: 239 GALLGACKIHGAVDLCHEVGRRL 261
A++ +HG + ++ R+
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRM 393
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 37/240 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +F + + + + W +++ G+ + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 19 AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI-SLGLL-PNSYTFPFLLKSC 76
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK-------- 125
A G+Q+HG++L+ +++ T+LI +Y + G LE A +VF
Sbjct: 77 A---KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVV 133
Query: 126 -----------------------SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +KDV +WNAMIS A KEAL +F EM +
Sbjct: 134 SYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN 193
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T V VL+ACA+++ VELG ++ HS + ++ ++DL + G + A
Sbjct: 194 VRPDEGTMVTVLSACAQSRSVELGRQV-HSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ AI FE M R++VSW +++ G+V+N +A+ +F+ M+ N V+
Sbjct: 180 MVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQ 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L GKQ+H + ++ + ++ +GT+L+ +Y K G L A
Sbjct: 239 PNASTLSSVLLGCSNL---SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +DV WNAMIS A + KEA+ +F+ MK++G+ N ITFVAVLTAC
Sbjct: 296 CKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHT 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G+ F M + + P ++HY C+VDLL RAG L A + +RSMPFEP S G
Sbjct: 356 GLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGT 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ +L+E P+ G YV L+NI+AG +W+ + +R+ M + +
Sbjct: 416 LLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAV 475
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 476 VKTPGYSWIE 485
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 19/252 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + +GD D A LF +M RDVVSW ++++G ++G EA VF M VR
Sbjct: 86 LLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP-----VR 140
Query: 61 PNEATYVSVLS--SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N ++ +++S +C+ ++ + + + VL TA++ Y +G +
Sbjct: 141 -NSVSWNAMVSGFACSRDMSAAEEWFRNAPE----KGDAVL----WTAMVSGYMDIGNVV 191
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTAC 177
+AI F++M ++++ +WNA+++ NS +AL +F M +E ++ N T +VL C
Sbjct: 192 KAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + G ++ H K + + +V + + G LS A + M D
Sbjct: 252 SNLSALGFGKQI-HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVA 309
Query: 238 LGALLGACKIHG 249
A++ HG
Sbjct: 310 WNAMISGYAQHG 321
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 186/292 (63%), Gaps = 4/292 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + ++ A LF+ M RD SW+++++G+ + G EA+ +F M+ ++
Sbjct: 213 MISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMI- 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEA VS +S+CA L L G+ +H YI ++ ++V +GT L+D+YGK G + A
Sbjct: 272 PNEAALVSAVSACAQLR---ALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++V +WN+MI+ LA N KEAL +F +M+ G N ITF+A+LT C+ +
Sbjct: 329 AGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHS 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G LF M + + P ++HYGC+VDLLGRAGL+ EA +F+ MP +P + + GA
Sbjct: 389 GLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGA 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292
L+GAC+IHG V+L E+G+RL++L+P H GRY +L NI A +RW+ +R
Sbjct: 449 LVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVR 500
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
++ V T LI + G ++ A ++F M +K+ +WNAMIS A +SR EA +FDE
Sbjct: 173 LVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDE 232
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
M ++ + ++ A+++ ++ + L+LF M+ +++P
Sbjct: 233 MPDR----DAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIP 272
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G++ A +F++M++R+V +WT +I G ++GC +A F M+ +
Sbjct: 665 LVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG--IV 722
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYVS+LS+CA + G L K+VH + + +V + +G AL+ +Y K G ++ A
Sbjct: 723 PDATTYVSILSACA---STGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDA 779
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV +DV +W MI LA + R EAL F +MK +G + N ++VAVLTAC+ A
Sbjct: 780 RSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHA 839
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM + + P MEHY C+VDLLGRAGLL EA+ F+ +MP EPD + GA
Sbjct: 840 GLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGA 899
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC +G +++ + L+L+PK YV+LSNI+A +W + +R M GI
Sbjct: 900 LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGI 959
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 960 RKEPGRSWIE 969
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 14/305 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YVK G ++ A L+F+ M++R+V+SWT +I G G EA +F M +
Sbjct: 260 LVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI-- 317
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TYVS+L++ A + G L K+VH + + + L + +G AL+ +Y K G ++ A
Sbjct: 318 PNSYTYVSILNANA---SAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 374
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +D+ +W MI LA + R +EA +F +M+ G N T++++L A A A
Sbjct: 375 RVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIA 434
Query: 181 QLVEL-GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L +++ H + + + ++ + + G + +A+ M + D
Sbjct: 435 STSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWN 493
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAM 295
A++G +G HE L++Q + Y+ L N H + ++ K
Sbjct: 494 AMMGGLAQNGC---GHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550
Query: 296 VEAGI 300
VE G+
Sbjct: 551 VETGL 555
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 7/245 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G + A +F+ +LK+++ WT++I G+ G +A+ V+ M +PNE
Sbjct: 163 YIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG--QPNEI 220
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+S+L +C VN L GK++H +I+++ V + TAL+++Y K G +E A +F
Sbjct: 221 TYLSILKACCCPVN---LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV ++V +W MI LA R +EA +F +M+ +G N T+V++L A A A +E
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
E+ HS + + +V + ++G + +A+ M E D ++G
Sbjct: 338 WVKEV-HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGG 395
Query: 245 CKIHG 249
HG
Sbjct: 396 LAQHG 400
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G +D A L+F+ M RDV+SW +++ G +NGC EA VF M LV
Sbjct: 464 LIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQE-GLV- 521
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY+S+L++ + L +VH + + ++ +G+A I +Y + G ++ A
Sbjct: 522 PDSTTYLSLLNTHG---STDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDA 578
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + ++ V TWNAMI A +EAL +F +M+ +G + TF+ +L+A
Sbjct: 579 RLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE 638
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ +E E+ HS +V + +V + G + AK+ M E + +
Sbjct: 639 EALEWVKEV-HSHATDAGLVDLRVG-NALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTM 695
Query: 241 LLGACKIHG 249
++G HG
Sbjct: 696 MIGGLAQHG 704
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 123/249 (49%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y++ G +D A LLF+ + R V +W ++I G + C EA+ +F M +
Sbjct: 565 FIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFI-- 622
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T++++LS+ V+E L K+VH + +V + +G AL+ Y K G ++ A
Sbjct: 623 PDATTFINILSAN---VDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYA 678
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF MV ++V TW MI LA + +A F +M +G+ + T+V++L+ACA
Sbjct: 679 KQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAST 738
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E E+ H+ +V + +V + + G + +A+ M E D
Sbjct: 739 GALEWVKEV-HNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTV 796
Query: 241 LLGACKIHG 249
++G HG
Sbjct: 797 MIGGLAQHG 805
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+YV++L C + + + L KQVH I+++ + ++++ L+ +Y + G L+ A +VF
Sbjct: 120 SYVNILQRC---LKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++ K++ W MI A ++A+ ++D+M+++ + NEIT++++L AC
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKAC 229
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK +D A +F+ +L RD+VSWT +I+G V+ EA+ VF M ++ V+
Sbjct: 257 LLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAM--QISGVK 314
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ +VLS+CA L G L G+ VH YI R I V +GT+++D+Y K GCL+ A
Sbjct: 315 PDKVVLSTVLSACASL---GALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTA 371
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +K+V +WNA+I+ A + R +EAL FD M GL NE+TF+ VL AC +
Sbjct: 372 VSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHS 431
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF M +++ P +HYGC+VDLLGRAGL+ EA + +++MP P
Sbjct: 432 GLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVT 491
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG +D ++ + EL+ G YV+LSN++A +RW R M E G+
Sbjct: 492 LLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGM 551
Query: 301 RKIPAYSLIE 310
+K P S+IE
Sbjct: 552 QKEPGSSVIE 561
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 10/249 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G A +F+ M +RDVVSWT++++ F R G F EA+ V M V
Sbjct: 159 LVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD-----VT 213
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +C N G GK VHG+ R E L++ +G AL+D+Y K L+ A
Sbjct: 214 PNEVTLASVLVACG---NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF ++ +D+ +W MIS L R EAL +F+ M+ G++ +++ VL+ACA
Sbjct: 271 RRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASL 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G H + + + + VVD+ + G L A + MP + + S A
Sbjct: 331 GALESG-RWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNA 388
Query: 241 LLGACKIHG 249
L+ +HG
Sbjct: 389 LINGFALHG 397
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T + L +CA L GGL G Q H + + V + AL+ YG G
Sbjct: 114 RPDGYTLPAALKACARL--GGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGD 171
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC-- 177
A +VF M +DV +W A++S+ EAL + EM + NE+T +VL AC
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVACGN 228
Query: 178 ---ARA----------QLVELGLELFHSMLGKFEVVPIMEHYGCVVD-LLGR-------- 215
ARA + EL L + +++L + ++ V D LL R
Sbjct: 229 LGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVM 288
Query: 216 -AGLL-----SEAKEFMRSMPF---EPDASVLGALLGACKIHGAVD 252
+GL+ SEA E +M +PD VL +L AC GA++
Sbjct: 289 ISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALE 334
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 197/315 (62%), Gaps = 10/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LF+ + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 263 LIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--T 320
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI---LRNEIVLSVFMGTALIDLYGKVGCL 117
PN+ T +S+L +CA L G + +G+ +H YI L+ + + T+LID+Y K G +
Sbjct: 321 PNDVTMLSILPACAHL---GAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDI 377
Query: 118 ERAIRVF-KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A +VF SM + + TWNAMIS A + R A +F M+ G+ ++ITFV +L+A
Sbjct: 378 DAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSA 437
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ + +++LG +F SM +E+ P +EHYGC++DLLG +GL EA+E + +MP EPD
Sbjct: 438 CSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGV 497
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ +LL ACKIHG ++L ++L++++P + G YV+LSNI+A RWN +R +
Sbjct: 498 IWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLN 557
Query: 297 EAGI-RKIPAYSLIE 310
+ G+ +K+P S IE
Sbjct: 558 DKGMKKKVPGCSSIE 572
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 143/263 (54%), Gaps = 6/263 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV G ++SA LF+ + +DVVSW ++I+G+V G + EA+ +FK MM N VR
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTN-VR 219
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+CA + LG+ VH +I + ++ + ALIDLY K G +E A
Sbjct: 220 PDESTMVTVVSACA---QSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 277 CELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 336
Query: 181 QLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G + ++ + K V + ++D+ + G + A++ S S
Sbjct: 337 GAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTW 396
Query: 239 GALLGACKIHGAVDLCHEVGRRL 261
A++ +HG + ++ R+
Sbjct: 397 NAMISGFAMHGRANAAFDIFSRM 419
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 45/265 (16%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEATYVSVLSS 72
AI +F+ + + +++ W ++ G + + + K + ++L + P+ T+ +L S
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRG---HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKS 98
Query: 73 CAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV------- 123
CA + EG +Q+HG++L+ L +++ T+LI +Y + G LE A +V
Sbjct: 99 CAKSKIRKEG-----QQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHR 153
Query: 124 ------------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMFDE-M 158
F + KDV +WNAMIS KEAL +F E M
Sbjct: 154 DVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMM 213
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
+R +E T V V++ACA++ +ELG + HS + ++ ++DL + G
Sbjct: 214 MMTNVRPDESTMVTVVSACAQSDSIELGRHV-HSWINDHGFASNLKIVNALIDLYSKFGE 272
Query: 219 LSEAKEFMRSMPFEPDASVLGALLG 243
+ A E + + D L+G
Sbjct: 273 VETACELFDGL-WNKDVISWNTLIG 296
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 194/302 (64%), Gaps = 5/302 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G ++SA +F+ M K D V+W+++I G+ R G EA+ +F+ M + V P+E T VS
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREM--QMAEVCPDEITMVS 239
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+LS+C L G L LGK + YI R+EI V + ALID++ K G + +A+++F++M
Sbjct: 240 MLSACTDL---GALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMN 296
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
K + +W ++I +A + R +EA +F+EM G+ +++ F+ +L+AC+ + LVE G E
Sbjct: 297 EKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGRE 356
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
F SM+ K+++VP +EHYGC+VD+ R GL+ EA EF+R+MP EP+ +L L+ AC+ H
Sbjct: 357 YFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGH 416
Query: 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308
G L ++ + L++ +P H YV+LSNI+A W + T +R+ M G++K+P ++
Sbjct: 417 GEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTM 476
Query: 309 IE 310
IE
Sbjct: 477 IE 478
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 25 DVVSWTSIINGFVRNG-CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
D + ++I + + G +A+ ++ M+ + L PN+ TY VL +CAGL L
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAIL--PNKFTYPFVLKACAGL---EVLN 149
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYG-KVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
LG+ VHG +++ + + ++ +Y G + A +VF M D TW+AMI
Sbjct: 150 LGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGY 209
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
A R EA+ +F EM+ + +EIT V++L+AC +ELG + + + + E+
Sbjct: 210 ARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKP 268
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E ++D+ + G +S+A + R+M
Sbjct: 269 VEVSNALIDMFAKCGDISKALKLFRAM 295
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K GD+ A+ LF M ++ +VSWTS+I G +G EA C+F+ M + V
Sbjct: 275 LIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSG--VA 332
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ ++ +LS+C +GLV G Y G + Y ++V + ++D+Y + G ++
Sbjct: 333 PDDVAFIGLLSACSHSGLVERGREYFGSMMKKY----KLVPKIEHYGCMVDMYCRTGLVK 388
Query: 119 RAIRVFKSMVIK 130
A+ ++M I+
Sbjct: 389 EALEFVRNMPIE 400
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V+NGDM+SA +F M D+VSW ++I V+ F EAI +F+ M +
Sbjct: 413 LIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG--IT 470
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T V V S+C L G L L K +HGYI + +I + +GTAL+D++ + G + A
Sbjct: 471 ADKVTMVGVASACGYL---GALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF MV +DV W A I ++A A+ +FDEM ++G++ + + FVA+LTA +
Sbjct: 528 MQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHG 587
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F SM + + P HYGC+VDLLGRAGLLSEA + SM EP+ + G+
Sbjct: 588 GLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGS 647
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H VD+ R+ EL P+ G +V+LSNI+A RW+ +R + E G
Sbjct: 648 LLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGA 707
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 708 HKMPGSSSIE 717
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 109/186 (58%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G++D +F+ M +R+VVSWTS+I G+ + GC+ EA+ +F M+ V +R
Sbjct: 180 LIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMV-EVG-IR 237
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V V+S+CA L + L LG+QV I E+ ++ M AL+D+Y K G +++A
Sbjct: 238 PNSVTMVGVISACAKLQD---LQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKA 294
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F V K++ +N ++S+ +E L + EM + G R + IT ++ ++AC+
Sbjct: 295 RKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSEL 354
Query: 181 QLVELG 186
V G
Sbjct: 355 DDVSCG 360
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 38/280 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K G +D A +F+ + +++V + +I++ +VR G E + V M+ + R
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP--R 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +S +S+C+ L + + GK HGY+LRN + + A+I++Y K G E A
Sbjct: 339 PDRITMLSAVSACSELDD---VSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMA 395
Query: 121 IRVFKSMVIK-------------------------------DVCTWNAMISSLASNSREK 149
RVF M+ K D+ +WN MI +L S K
Sbjct: 396 CRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFK 455
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EA+ +F M+ +G+ A+++T V V +AC ++L + H + K ++ M +
Sbjct: 456 EAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTAL 514
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
VD+ R G A + M + D S A +GA + G
Sbjct: 515 VDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEG 553
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
++S+I GF G +AI VF+ +M G V P+ T+ VLS+C L G
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAV----PDNFTFPFVLSAC---TKSAALTEGF 159
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
QVHG I++ +F+ +LI YG+ G ++ RVF M ++V +W ++I A
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
KEA+ +F EM E G+R N +T V V++ACA+ Q ++LG E + +G+ E+
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLG-EQVCTCIGELELEVNALMV 278
Query: 207 GCVVDLLGRAGLLSEAKE 224
+VD+ + G + +A++
Sbjct: 279 NALVDMYMKCGAIDKARK 296
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 193/327 (59%), Gaps = 23/327 (7%)
Query: 1 MIDGYVKNGDMDSA----------------ILLFENMLKRDVVSWTSIINGFVRNGCFGE 44
++D Y+K G+++SA +LF+ M +DVV W ++I G+V E
Sbjct: 221 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE 280
Query: 45 AICVFKNMMG-NVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103
A+ +F M N+N P+E T VS LS+C+ L G L +G +H YI ++E+ L+V +
Sbjct: 281 ALALFNEMQAMNIN---PDEVTMVSCLSACSQL---GALDVGIWIHHYIEKHELSLNVAL 334
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
GTALID+Y K G + +AI+VF+ + ++ TW A+IS LA + A+ F EM + +
Sbjct: 335 GTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSV 394
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+E+TF+ +L+AC LVE G + F M KF + P ++HY C+VDLLGRAGLL EA+
Sbjct: 395 MPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAE 454
Query: 224 EFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283
E ++SMP E DA V GAL AC+IHG V + +LL++ P G YV+L+N++ E
Sbjct: 455 ELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAE 514
Query: 284 RWNRATDLRKAMVEAGIRKIPAYSLIE 310
W A RK M + G+ K P S IE
Sbjct: 515 MWKEAGKXRKLMRQRGVEKTPGCSSIE 541
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 143/260 (55%), Gaps = 23/260 (8%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V GD+D A +F+ RD+VSW S+ING+VR G EA+ ++ M V ++P+E T
Sbjct: 125 VSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREM--KVEGIKPDEVT 182
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ V+SSCA L + L LG++ H YI N + L+V + AL+D+Y K G LE A ++F
Sbjct: 183 MIGVVSSCAQLED---LDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFD 239
Query: 126 SMV----------------IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
SM KDV WNAMI +R KEAL +F+EM+ + +E+T
Sbjct: 240 SMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVT 299
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
V+ L+AC++ +++G+ + H + K E+ + ++D+ + G +++A + + +
Sbjct: 300 MVSCLSACSQLGALDVGIWI-HHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL 358
Query: 230 PFEPDASVLGALLGACKIHG 249
P ++ A++ +HG
Sbjct: 359 PGR-NSLTWTAIISGLALHG 377
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 112/220 (50%), Gaps = 5/220 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D + N + SW I GF+ + EA+ ++K ++ + +P+ TY +
Sbjct: 27 DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVL-QCDGTKPDNYTYPLL 85
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+CA L + +G ++ G++L +F+ A+I L G L+ A ++F +
Sbjct: 86 FKACARL---SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCV 142
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN+MI+ EAL + EMK +G++ +E+T + V+++CA+ + ++LG E
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE- 201
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
H + + + + ++D+ + G L A++ SM
Sbjct: 202 SHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSM 241
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY ++G M++A+ LF M R+V+SWT++I+G+ +NG + +A+ +F + N +
Sbjct: 154 LIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGL-ENEKGTK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + SVL +C+ L G L +GK++ Y N + ++ A+++L+ + G +E A
Sbjct: 213 PNEVSIASVLPACSQL---GALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEA 269
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF + K ++C+WN MI LA + R +AL ++D+M + +R +++TFV +L AC
Sbjct: 270 QQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G +LF SM KF+V P +EHYGC+VDLLGRAG L EA +++MP PD+ + G
Sbjct: 330 GGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V+L L +L+P + G YV+LSNI+A W+ LRK M
Sbjct: 390 TLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGH 449
Query: 300 IRKIPAYSLIE 310
I K YS IE
Sbjct: 450 ITKRAGYSYIE 460
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 42/258 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ ++ D+ A LF+ + K V + I F G ++ M
Sbjct: 22 LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQG--CS 79
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ ++ + +CA L N +Y G+ +H + ++ +F TAL+D+Y K+G L A
Sbjct: 80 PNQYSFTFLFPACASLFN---VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSA 136
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK--------------------- 159
++F M ++D+ TWN++I+ A + + AL +F++M
Sbjct: 137 RQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYA 196
Query: 160 -----------EKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHY 206
EKG + NE++ +VL AC++ +++G +E + G F+ +
Sbjct: 197 KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSN-- 254
Query: 207 GCVVDLLGRAGLLSEAKE 224
V++L R G + EA++
Sbjct: 255 -AVLELHARCGNIEEAQQ 271
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H Y LRN + + F+ L+ L L A +F + V +N I + +S
Sbjct: 5 KQIHAYSLRNGLDHTKFLIEKLLQLPD----LPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+++ +M +G N+ +F + ACA V G ++ HS K M
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QMLHSHFCKSGFASDMFA 119
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMP 230
++D+ + G+L A++ MP
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMP 144
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++NG +D+A+ +F+ M RD++SWT++I GFV+ G EA+ F+ M ++ V
Sbjct: 131 MIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREM--QISGVN 188
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++S+ A N G L G VH Y+L + +V + +LIDLY + GC+E A
Sbjct: 189 PD---YVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFA 245
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN++I A+N E+LV F +M+ +G + +TF LTAC+
Sbjct: 246 RQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHV 305
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F M + + P +EHYGC+VDL RAG L +A + SMP +P+ V+G+
Sbjct: 306 GLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGS 365
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + + +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 366 LLAACRNHGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 425
Query: 300 IRKIPAYSLIE 310
++K P YS IE
Sbjct: 426 LKKQPGYSSIE 436
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+VSWTS I R+G EA+ F +M + + PN T++++LS+C G G LG
Sbjct: 21 IVSWTSRITLLSRDGRLAEAVREFSDM--RLAGIEPNHITFIALLSAC-GNFPSGSEGLG 77
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+HGY + + S V +GTA++ +Y K G L +A VF + K+ TWN MI
Sbjct: 78 YLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMR 137
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
N + A+ +FD+M ++ L I++ A++T + E L F M
Sbjct: 138 NGQVDNAVDVFDKMPDRDL----ISWTAMITGFVKKGFHEEALAWFREM 182
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 190/312 (60%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GDM +A ++F + D V+WTS+I+G V NG +A+ ++ M + V
Sbjct: 1148 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM--RQSRVM 1205
Query: 61 PNEATYVSVL--SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T+ +++ SSC + +G +Q+H +++ + V F+GT+L+D+Y K G +E
Sbjct: 1206 PDEYTFATLIKASSCVTALEQG-----RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 1260
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+FK M ++++ WNAM+ LA + +EA+ +F MK G+ + ++F+ +L+AC+
Sbjct: 1261 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L E HSM + + P +EHY C+VD LGRAGL+ EA + + +MPF+ AS+
Sbjct: 1321 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 1380
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALLGAC+I G V+ V RL L+P YV+LSNI+A RW+ TD RK M
Sbjct: 1381 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 1440
Query: 299 GIRKIPAYSLIE 310
++K P +S I+
Sbjct: 1441 NVKKDPGFSWID 1452
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMG-NVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
DV W ++ + G AI F NM G N++ + T + VL++ AG + L
Sbjct: 868 DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDY---DAVTLLVVLAAVAGTDD---LE 921
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LGKQVHG +++ + V + +L+++Y K+GC A VF M D+ +WN+MISS A
Sbjct: 922 LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+S E+E++ +F ++ +GL+ + T +VL AC+
Sbjct: 982 QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFV-----RNGCFGEAICVFKNMMGNVNLV 59
Y K G + SA +F+ +RD+V+W +I+ + +G E + +F+ + +L
Sbjct: 666 YSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR--LLRASLG 723
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
T VL C +N G L+ + VHGY ++ + VF+ AL+++Y K G +
Sbjct: 724 STTRMTLAPVLKLC---LNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 780
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M +DV WN M+ EKEA +F E GLR +E + +L +
Sbjct: 781 ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSE 840
Query: 180 AQLVE 184
E
Sbjct: 841 VNWDE 845
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K+G M+ A LF+N D+ W +++ G++ +A+ +F + + + +
Sbjct: 1047 LIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFS--LIHKSGEK 1104
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T + +C LV L GKQ+H + ++ + + + ++D+Y K G + A
Sbjct: 1105 SDQITLATAAKACGCLV---LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA 1161
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + D W +MIS N E +AL ++ M++ + +E TF ++ A +
Sbjct: 1162 GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCV 1221
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E G +L H+ + K + V +VD+ + G + +A + M
Sbjct: 1222 TALEQGRQL-HANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 1269
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 46/276 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G M A LLF+ M +RDVV W ++ G+V+ G EA +F + + +R
Sbjct: 768 LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF--HRSGLR 825
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +L+ + + + G +L QV Y A
Sbjct: 826 PDEFSVQLILNGVSEVNWDEGKWLADQVQAY----------------------------A 857
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ S DV WN +S A+ F M + + +T + VL A A
Sbjct: 858 AKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGT 917
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ELG ++ H + K + + +V++ + G A+E M D +
Sbjct: 918 DDLELGKQV-HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNS 975
Query: 241 LLGAC--------KIHGAVDLCHEVGRRLLELQPKH 268
++ +C ++ +DL HE L+P H
Sbjct: 976 MISSCAQSSLEEESVNLFIDLLHE------GLKPDH 1005
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
++ L LGK H I+ + F+ L+ +Y K G L A +VF + +D+ TWN
Sbjct: 632 ISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWN 691
Query: 137 AMISSLAS-----NSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A++ + A+ + +E L +F ++ +T VL C
Sbjct: 692 AILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLC 737
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 198/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++++A LFE +L +DV+SW ++I G+ + EA+ +F+ M+ + R
Sbjct: 307 LMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--R 364
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + +G+ +H YI + + + T+LID+Y K G +E
Sbjct: 365 PNDVTMLSILPACAHL---GAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIE 421
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF S++ K + +WNAMI A + R A +F M++ G+ ++ITFV +L+AC+
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACS 481
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
R+ +++LG +F +M +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 482 RSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIW 541
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACKI G V+L + L++++P++ G YV+LSNI+A RWN +R + +
Sbjct: 542 CSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDK 601
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 602 GMKKVPGCSSIE 613
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 141/263 (53%), Gaps = 9/263 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G ++SA LF+ + +DVVSW ++I+G+ G + EA+ +FK MM +R
Sbjct: 206 LIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN--IR 263
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+CA G + LG+QVH +I + ++ + +L+DLY K G LE A
Sbjct: 264 PDESTMVTVVSACA---QSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ ++ KDV +WN +I + KEAL++F EM G R N++T +++L ACA
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHL 380
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G H + K ++D+ + G + A + S+ S
Sbjct: 381 GAIDIG-RWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSW 438
Query: 239 GALLGACKIHGAVDLCHEVGRRL 261
A++ +HG D ++ R+
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRM 461
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 37/240 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 87 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLL-PNSYTFPFLLKSC 144
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK-------- 125
A G+Q+HG++L+ L +F+ T+LI +Y + G LE A +VF
Sbjct: 145 A---KSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201
Query: 126 -----------------------SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +KDV +WNAMIS A KEAL +F EM +
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T V V++ACA++ +ELG ++ HS + ++ ++DL + G L A
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQV-HSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AI VF+++ ++ WN M A +S AL ++ M GL N TF +L +
Sbjct: 84 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA+++ + G ++ +L + + H ++ + + G L +A++ P D
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTS-LISVYVQNGRLEDARKVFDRSPHR-DVV 201
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAM 295
AL+ G + E ++L + P K + + + +A + A +L K M
Sbjct: 202 SYTALIKGYASRGYI----ESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM 257
Query: 296 VEAGIR 301
++ IR
Sbjct: 258 MKTNIR 263
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G ++ A +F+ M ++D VSW +++ + + GC E + +F M V
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV- 381
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + VLS+CA + L G Q+HG ++R + F+G AL+ +Y K G +E A
Sbjct: 382 -NRSAFACVLSTCADIA---ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +DV +WN MI+ A + KEAL +FD M+ + ++IT V VL AC+ +
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F+SM F V EHY C++DLLGRAG L+EA + M+ MPFEPD+++ GA
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IH +L ++ EL+P++ G YV+LSNI+A +W A +R M E G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 618 KKVPGFSWIE 627
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 62/337 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GDM A LF+ RDV +WT++++G+ +NG EA VF M
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM-------- 281
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + A + + K++ + RN V ++ Y + G LE
Sbjct: 282 -PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEE 335
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M KD +W AM+++ + +E L +F EM G N F VL+ CA
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395
Query: 180 AQLVELGLELF---------------HSMLGKFEVVPIMEH---------------YGCV 209
+E G++L +++L + ME + +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 455
Query: 210 VDLLGRAGLLSEAKE---FMRSMPFEPDASVLGALLGACKIHGAVD--------LCHEVG 258
+ R G EA E MR+ +PD L +L AC G V+ + H+ G
Sbjct: 456 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515
Query: 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ +P+H Y + ++ R A DL K M
Sbjct: 516 ---VTAKPEH---YTCMIDLLGRAGRLAEAHDLMKDM 546
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 28/273 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +G + A F+ ++D VSW ++ +VRNG EA +F +
Sbjct: 137 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-------- 188
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + +G V G + +++ + ++V M + Y + G + A
Sbjct: 189 -TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM----VSGYARRGDMVEA 243
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + ++DV TW A++S A N +EA +FD M E+ N +++ A++ A +
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQR 299
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++++ ELF+ M + + + ++ +AG+L EAK +MP + DA A
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273
+L A G C E +L ++ CG +V
Sbjct: 354 MLAAYSQGG----CSEETLQLF-IEMGRCGEWV 381
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I +++ G + A LF M +R ++ +++ G+ NG A +F+ + RP
Sbjct: 45 ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA------IPRP 98
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ +Y ++L + A + ++L D G
Sbjct: 99 DNYSYNTLLHALA----------------------------VSSSLADARG--------- 121
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+F M ++D T+N MISS A++ A FD EK + +++ +L A R
Sbjct: 122 -LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAYVRNG 176
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
VE LF+S +++V+ + ++ + G +SEA+E MP
Sbjct: 177 RVEEARGLFNSRT-EWDVI----SWNALMSGYVQWGKMSEARELFDRMP 220
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G ++ A +F+ M ++D VSW +++ + + GC E + +F M V
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV- 381
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + VLS+CA + L G Q+HG ++R + F+G AL+ +Y K G +E A
Sbjct: 382 -NRSAFACVLSTCADIA---ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +DV +WN MI+ A + KEAL +FD M+ + ++IT V VL AC+ +
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F+SM F V EHY C++DLLGRAG L+EA + M+ MPFEPD+++ GA
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IH +L ++ EL+P++ G YV+LSNI+A +W A +R M E G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 618 KKVPGFSWIE 627
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 62/337 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GDM A LF+ RDV +WT++++G+ +NG EA VF M
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM-------- 281
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + A + + K++ + RN V ++ Y + G LE
Sbjct: 282 -PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEE 335
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M KD +W AM+++ + +E L +F EM G N F VL+ CA
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395
Query: 180 AQLVELGLELF---------------HSMLGKFEVVPIMEH---------------YGCV 209
+E G++L +++L + ME + +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 455
Query: 210 VDLLGRAGLLSEAKE---FMRSMPFEPDASVLGALLGACKIHGAVD--------LCHEVG 258
+ R G EA E MR+ +PD L +L AC G V+ + H+ G
Sbjct: 456 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515
Query: 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ +P+H Y + ++ R A DL K M
Sbjct: 516 ---VTAKPEH---YTCMIDLLGRAGRLAEAHDLMKDM 546
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 28/273 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +G + A F+ ++D VSW ++ +VRNG EA +F +
Sbjct: 137 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-------- 188
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + +G V G + +++ + ++V M + Y + G + A
Sbjct: 189 -TEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM----VSGYARRGDMVEA 243
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + ++DV TW A++S A N +EA +FD M E+ N +++ A++ A +
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQR 299
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++++ ELF+ M + + + ++ +AG+L EAK +MP + DA A
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273
+L A G C E +L ++ CG +V
Sbjct: 354 MLAAYSQGG----CSEETLQLF-IEMGRCGEWV 381
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 190/308 (61%), Gaps = 5/308 (1%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
GYV+ G + +A +FE M RD VSW++++ G+V+ G A+ VF++M+ VR NE
Sbjct: 206 GYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKG--VRVNE 263
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
A V+ LS+ A + G L G+ VH + R + +SV +G AL+D++ K GC+ A V
Sbjct: 264 AAVVTALSAAAQM---GLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREV 320
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F M +DV WNAMI LAS+ ++A+ +F ++GL +ITFV VL AC+R LV
Sbjct: 321 FDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLV 380
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G F M+ K+ + P MEHYGC+VDLLGRAGL+SEA E + M PD + G +L
Sbjct: 381 AEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLS 440
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
ACK H VDL VG +L+EL+P H G YV+L++I+A ++W+ ++RK M G K
Sbjct: 441 ACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKS 500
Query: 304 PAYSLIEA 311
+SL+EA
Sbjct: 501 AGWSLMEA 508
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V A++ Y + G + A VF+ M ++D +W+ ++ AL +F +
Sbjct: 194 VRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRD 253
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRA 216
M EKG+R NE V L+A A+ L+E G H ++ + +P+ + G +VD+ +
Sbjct: 254 MVEKGVRVNEAAVVTALSAAAQMGLLEHG-RFVHEVVQRTG-MPVSVNVGAALVDMFSKC 311
Query: 217 GLLSEAKEFMRSMP 230
G ++ A+E MP
Sbjct: 312 GCVAVAREVFDGMP 325
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 187/306 (61%), Gaps = 6/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + ++ A LF+ ++ + SW ++I+G+ +NG AI +F+ MM ++ PN
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLS---PNPV 416
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+LS+CA L G L +GK VHG I + +V++ TAL+D+Y K G + A ++F
Sbjct: 417 TVTSILSACAQL---GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV K+V TWNAMI+ + KEAL +F EM + G+ +TF+++L AC+ + LV
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+FHSM + P+ EHY C+VD+LGRAG L+ A EF+ MP EP +V GALLGA
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH ++ + +RL +L P++ G YV+LSNI++ + +A +R+ + + + K P
Sbjct: 594 CMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTP 653
Query: 305 AYSLIE 310
+LIE
Sbjct: 654 GCTLIE 659
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF + K D+ + +I GF NG +I ++ ++ NL RP+ TY +S+ + L
Sbjct: 68 LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNL-RPDNFTYAFAISAASRL 126
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+E +G +H + + + + ++F+G+A++DLY K E A +VF M +D WN
Sbjct: 127 EDE---RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWN 183
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
MIS + NS ++++ +F +M + GL + T VLTA A Q LG+
Sbjct: 184 TMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 119/249 (47%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G +LF+ + + D++S+ ++I+G+ N A+ +F+ ++ + R
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ--R 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T V ++ L L + + L+ I+L + TAL +Y ++ ++ A
Sbjct: 313 VNSSTLVGLIPVYLPF---NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N A+ +F EM + L N +T ++L+ACA+
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQL 428
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ +G + H ++ + + +VD+ + G + EA++ M + + A
Sbjct: 429 GALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNA 486
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 487 MITGYGLHG 495
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M +RD V W ++I+GF RN F ++I VF +M+ +V L
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML-DVGLSF 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +VL++ A L LG + + + V++ T LI LY K G +
Sbjct: 213 -DSTTLATVLTAVAELQE---YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
+F + D+ ++NAMIS N + A+ +F E+ G R N T V ++
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A LF+ M+ ++VV+W ++I G+ +G EA+ +F M+ + +
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG--IP 513
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++S+L +C +GLV+EG + Y + +S ++D+ G+ G L
Sbjct: 514 PTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQP---MSEHYA-CMVDILGRAGQLT 569
Query: 119 RAIRVFKSMVIKD-VCTWNAMI 139
A+ + M ++ W A++
Sbjct: 570 NALEFIERMPLEPGPAVWGALL 591
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYV+ GD+ ++ LF++M + VVSW +I+G +NG F EAI +F +M + V
Sbjct: 196 MIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM--QLGDVP 253
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G + LGK VH + +NEI + +G+ALID+Y K G +++A
Sbjct: 254 PNYVTLVSVLPAVSRL---GAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKA 310
Query: 121 IRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++VF+ + K+ TW+A+I LA + R ++AL F M++ G+ +++ ++ VL+AC+
Sbjct: 311 VQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSH 370
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G +++ M+ ++P +EHYGC+VDLLGRAG L EA++ + +MP +PD +L
Sbjct: 371 AGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILK 430
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG +++ + + L+ P G YV LSN+ A W +R M E
Sbjct: 431 ALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELD 490
Query: 300 IRKIPAYSLIE 310
IRK P S IE
Sbjct: 491 IRKDPGCSWIE 501
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 48/274 (17%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFG-------EAICVFKNMMGNVNLVRPNEATYVSV 69
F + + SW +II + EA+ F +M+ + LV PN+ T+ V
Sbjct: 71 FFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTD-GLVEPNKFTFPCV 129
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS------------------------ 100
L +CA L + GKQ+HG++++ +E V S
Sbjct: 130 LKACAKLAR---IEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRL 186
Query: 101 ---VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V + +ID Y ++G L + +F SM K V +WN MIS A N KEA+ MF +
Sbjct: 187 EGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHD 246
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
M+ + N +T V+VL A +R +ELG + LF + + E+ ++ ++D+ +
Sbjct: 247 MQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLF-AEKNEIEIDDVLG--SALIDMYSK 303
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G + +A + + + + A++G +HG
Sbjct: 304 CGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHG 337
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G ++ A +F+ M ++D VSW +++ + + GC E + +F M V
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV- 381
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + VLS+CA + L G Q+HG ++R + F+G AL+ +Y K G +E A
Sbjct: 382 -NRSAFACVLSTCADIA---ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +DV +WN MI+ A + KEAL +FD M+ + ++IT V VL AC+ +
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F+SM F V EHY C++DLLGRAG L+EA + M+ MPFEPD+++ GA
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IH +L ++ EL+P++ G YV+LSNI+A +W A +R M E G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 618 KKVPGFSWIE 627
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 62/337 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GDM A LF+ RDV +WT++++G+ +NG EA VF M
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM-------- 281
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + A + + K++ + RN V ++ Y + G LE
Sbjct: 282 -PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEE 335
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M KD +W AM+++ + +E L +F EM G N F VL+ CA
Sbjct: 336 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 395
Query: 180 AQLVELGLELF---------------HSMLGKFEVVPIMEH---------------YGCV 209
+E G++L +++L + ME + +
Sbjct: 396 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 455
Query: 210 VDLLGRAGLLSEAKE---FMRSMPFEPDASVLGALLGACKIHGAVD--------LCHEVG 258
+ R G EA E MR+ +PD L +L AC G V+ + H+ G
Sbjct: 456 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 515
Query: 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ +P+H Y + ++ R A DL K M
Sbjct: 516 ---VTAKPEH---YTCMIDLLGRAGRLAEAHDLMKDM 546
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 28/273 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +G + A F+ ++D VSW ++ +VRNG EA +F +
Sbjct: 137 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-------- 188
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + +G V G + +++ + ++V M + Y + G + A
Sbjct: 189 -TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM----VSGYARRGDMVEA 243
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + ++DV TW A++S A N +EA +FD M E+ N +++ A++ A +
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQR 299
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++++ ELF+ M + + + ++ +AG+L EAK +MP + DA A
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 353
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273
+L A G C E +L ++ CG +V
Sbjct: 354 MLAAYSQGG----CSEETLQLF-IEMGRCGEWV 381
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I +++ G + A LF M +R ++ +++ G+ NG A +F+ + RP
Sbjct: 45 ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA------IPRP 98
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ +Y ++L + A + ++L D G
Sbjct: 99 DNYSYNTLLHALA----------------------------VSSSLADARG--------- 121
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+F M ++D T+N MISS A++ A FD EK + +++ +L A R
Sbjct: 122 -LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK----DAVSWNGMLAAYVRNG 176
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
VE LF+S +++V+ + ++ + G +SEA+E MP
Sbjct: 177 RVEEARGLFNSRT-EWDVIS----WNALMSGYVQWGKMSEARELFDRMP 220
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 187/306 (61%), Gaps = 6/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + ++ A LF+ ++ + SW ++I+G+ +NG AI +F+ MM ++ PN
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLS---PNPV 416
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+LS+CA L G L +GK VHG I + +V++ TAL+D+Y K G + A ++F
Sbjct: 417 TVTSILSACAQL---GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV K+V TWNAMI+ + KEAL +F EM + G+ +TF+++L AC+ + LV
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+FHSM + P+ EHY C+VD+LGRAG L+ A EF+ MP EP +V GALLGA
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH ++ + +RL +L P++ G YV+LSNI++ + +A +R+ + + + K P
Sbjct: 594 CMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTP 653
Query: 305 AYSLIE 310
+LIE
Sbjct: 654 GCTLIE 659
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF + K D+ + +I GF NG +I ++ ++ NL RP+ TY +S+ + L
Sbjct: 68 LFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL-RPDNFTYAFAISAASRL 126
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+E +G +H + + + + ++F+G+A++DLY K E A +VF M +D WN
Sbjct: 127 EDE---RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWN 183
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
MIS + NS ++++ +F +M + GL + T VLTA A Q LG+
Sbjct: 184 TMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 119/249 (47%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G +LF+ + + D++S+ ++I+G+ N A+ +F+ ++ + R
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ--R 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +T V ++ L L + + L+ I+L + TAL +Y ++ ++ A
Sbjct: 313 VNSSTLVGLIPVYLPF---NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N A+ +F EM + L N +T ++L+ACA+
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQL 428
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ +G + H ++ + + +VD+ + G + EA++ M + + A
Sbjct: 429 GALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNA 486
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 487 MITGYGLHG 495
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M +RD V W ++I+GF RN F ++I VF +M+ +V L
Sbjct: 154 IVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML-DVGLSF 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +VL++ A L LG + + + V++ T LI LY K G +
Sbjct: 213 -DSTTLATVLTAVAELQE---YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
+F + D+ ++NAMIS N + A+ +F E+ G R N T V ++
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A LF+ M+ ++VV+W ++I G+ +G EA+ +F M+ + +
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG--IP 513
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++S+L +C +GLV+EG + Y + +S ++D+ G+ G L
Sbjct: 514 PTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQP---MSEHYA-CMVDILGRAGQLT 569
Query: 119 RAIRVFKSMVIKD-VCTWNAMI 139
A+ + M ++ W A++
Sbjct: 570 NALEFIERMPLEPGPAVWGALL 591
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY ++G M++A+ LF M R+V+SWT++I+G+ +NG + +A+ +F + N +
Sbjct: 154 LIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGL-ENEKGTK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + SVL +C+ L G L +GK++ Y N + ++ A+++L+ + G +E A
Sbjct: 213 PNEVSIASVLPACSQL---GALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEA 269
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF + K ++C+WN MI LA + R +AL ++D+M + +R +++TFV +L AC
Sbjct: 270 QQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G +LF SM KF+V P +EHYGC+VDLLGRAG L EA +++MP PD+ + G
Sbjct: 330 GGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V+L L +L+P + G YV+LSNI+A W+ LRK M
Sbjct: 390 TLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGH 449
Query: 300 IRKIPAYSLIE 310
I K YS IE
Sbjct: 450 ITKRAGYSYIE 460
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 125/283 (44%), Gaps = 42/283 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ ++ D+ A LF+ + K V + I F G ++ M
Sbjct: 22 LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQG--CS 79
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ ++ + +CA L N +Y G+ +H + ++ +F TAL+D+Y K+G L A
Sbjct: 80 PNQYSFTFLFPACASLFN---VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSA 136
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM---------------------- 158
++F M ++D+ TWN++I+ A + + AL +F++M
Sbjct: 137 RQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYA 196
Query: 159 ----------KEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHY 206
EKG + NE++ +VL AC++ +++G +E + G F+ +
Sbjct: 197 KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSN-- 254
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
V++L R G + EA++ + + + ++ +HG
Sbjct: 255 -AVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H Y LRN + + F+ L+ L L A +F + V +N I + +S
Sbjct: 5 KQIHAYSLRNGLDHTKFLIEKLLQLPD----LPYACTLFDQIPKPSVYLYNKFIQTFSSI 60
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+++ +M +G N+ +F + ACA V G ++ HS K M
Sbjct: 61 GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPG-QMLHSHFCKSGFASDMFA 119
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMP 230
++D+ + G+L A++ MP
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMP 144
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK+G++ A LF+ M R+VVSWT++I + + EA+ VF+ M +
Sbjct: 141 MISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEG-IE 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +SVLS+C L G + LG+ VH +++R + + + A+ID+Y K+GC+ +A
Sbjct: 200 PDGVALLSVLSACGDL---GAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K V TW +I+ A + EA+ MF M+ + + N++TF+A+L+AC+
Sbjct: 257 VEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHV 316
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L +LG F M+ ++ + +EHYGC+VDLLGRAG L EA++ ++ MPF+ +A++ GA
Sbjct: 317 GLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGA 376
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A + HG +L + L+EL+P + G Y++LSNI+A ERW+ + LRK M + G+
Sbjct: 377 LLAAARTHGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGL 436
Query: 301 RKIPAYSLIE 310
R +P S IE
Sbjct: 437 RNVPGASSIE 446
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 36/176 (20%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG Q+H I+R + + +LI Y G + A VF KD+ WN MIS
Sbjct: 87 LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
+ A +FD M + N +++ V+ A A+ + +E+F M
Sbjct: 147 KSGNLACARELFDVMPAR----NVVSWTTVIGAYAQMKQPVEAVEVFRRM---------- 192
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
+ +E + EPD L ++L AC GAVDL V R
Sbjct: 193 -----------------QVEEGI-----EPDGVALLSVLSACGDLGAVDLGEWVHR 226
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 190/312 (60%), Gaps = 5/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-NVNLV 59
+I K G + A LF+ M +++V+SW+ +I+G+V G + A+ +F+++ + +
Sbjct: 132 IIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQL 191
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPNE T SVLS+CA L G L GK VH YI + + + V +GT+LID+Y K G +ER
Sbjct: 192 RPNEFTMSSVLSACARL---GALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248
Query: 120 AIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F ++ KDV W+AMI++ + + +E L +F M G+R N +TFVAVL AC
Sbjct: 249 AKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACV 308
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV G E F M+ ++ V P+++HYGC+VDL RAG + +A ++SMP EPD +
Sbjct: 309 HGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIW 368
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL +IHG V+ C +LLEL P + YV+LSN++A L RW LR M
Sbjct: 369 GALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVR 428
Query: 299 GIRKIPAYSLIE 310
GI+K+P SL+E
Sbjct: 429 GIKKLPGCSLVE 440
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 46/283 (16%)
Query: 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE 96
V+N F A+ ++ M ++ V P+ T+ +L S +N + G+Q+H IL
Sbjct: 39 VQNPAFPPALSLYLRM--RLHAVLPDLHTFPFLLQS----INTP--HRGRQLHAQILLLG 90
Query: 97 IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
+ F+ T+LI++Y G A + F + D+ +WNA+I + A A +FD
Sbjct: 91 LANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFD 150
Query: 157 EMKEKG----------------------------------LRANEITFVAVLTACARAQL 182
+M EK LR NE T +VL+ACAR
Sbjct: 151 QMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGA 210
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
++ G + H+ + K + + ++D+ + G + AK ++ E D A++
Sbjct: 211 LQHG-KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMI 269
Query: 243 GACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVL-SNIHAGL 282
A +HG + C E+ R++ ++P VL + +H GL
Sbjct: 270 TAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGL 312
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+++A LFE + +DVVSW ++I G+ + EA+ +F+ M+ +
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC-- 298
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +SVL +CA L G + +G+ +H YI + + + T+LID+Y K G +E
Sbjct: 299 PNDVTLLSVLPACAHL---GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIE 355
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ + + +WNAMI A + R A +F M+ + ++ITFV +L+AC+
Sbjct: 356 AAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACS 415
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ L++LG ++F SM + + P +EHYGC++DLLG +GL EA+E + +MP EPD +
Sbjct: 416 HSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIW 475
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK HG ++L ++L++++P++ G YV+LSNI+A RW +R +
Sbjct: 476 CSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGK 535
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 536 GMKKVPGCSSIE 547
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 47/309 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY GD SA +F+ + +RDVVSW ++I G+V NG + EA+ +FK MM VR
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN--VR 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR----NEIVLSVFMGTALIDLYGKVGC 116
P+E T VSV+S+CA G + LG+QVH ++ + S+ + ALIDLY K G
Sbjct: 194 PDEGTLVSVVSACA---QSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +F+ + KDV +WN +I + KEAL++F EM G N++T ++VL A
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310
Query: 177 CARAQLVELGLELFHSMLGKFE-VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF---- 231
CA +++G + + K + V ++D+ + G + A + SM +
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370
Query: 232 ------------------------------EPDASVLGALLGACKIHGAVDLCHEVGRRL 261
EPD LL AC G +DL ++ + +
Sbjct: 371 SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430
Query: 262 LE---LQPK 267
+ L PK
Sbjct: 431 TQDYNLTPK 439
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 36/207 (17%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W +++ G + A+ ++ M+ +L PN ++ +L SC
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL--PNSYSFPFLLKSC 74
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------- 126
A G+Q+H +L+ L ++ T+LI +Y + G LE A +VF +
Sbjct: 75 A---KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVV 131
Query: 127 ------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +DV +WNAMI+ N R +EAL +F EM
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191
Query: 163 LRANEITFVAVLTACARAQLVELGLEL 189
+R +E T V+V++ACA++ +ELG ++
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQV 218
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AI VF+++ ++ WN M+ AS+S AL M+ M G N +F +L +
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 177 CARAQLVELGLELFHSML 194
CA+++ E G ++ +L
Sbjct: 74 CAKSKAFEEGRQIHAQVL 91
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 192/313 (61%), Gaps = 6/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN---VN 57
++ GY G ++ A +F+ M R+ S++++++G+VRNG F E + +F+ +
Sbjct: 157 LVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCA 216
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
++ N A VSVL++C + G GK +H Y+ N + + +GTALID Y K G +
Sbjct: 217 CLKFNGALLVSVLNACTMV---GAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWV 273
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +VF M +KDV TW+AMI LA N K AL +F++M++ G + NE+TFV VLTAC
Sbjct: 274 KGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTAC 333
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
L LF M K+ + P +EHYGCVVD+L R+G + +A F+ SM EPD ++
Sbjct: 334 NHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAI 393
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL C +HG +L +VG+ L+E +PKH GRYV+L+N++A + +W +++RK M +
Sbjct: 394 WGSLLNGCLMHGHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKD 453
Query: 298 AGIRKIPAYSLIE 310
G+ + +S IE
Sbjct: 454 RGVMIVSGWSFIE 466
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 34/289 (11%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD A LF ++ ++ + SII + N F + VF M+ N N +RPN T+ +
Sbjct: 36 GDFRYAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKML-NTN-IRPNSHTFTT 93
Query: 69 VLSSCAGLV-------------NEGGLYLGKQV------HGYILRNEIVL------SVFM 103
++ +C L N +Y V H I V +V
Sbjct: 94 LVKACVSLSSLEQVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVC 153
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG- 162
T+L+ Y G + A VF M +++ +++AM+S N E + +F E+K+K
Sbjct: 154 WTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDK 213
Query: 163 ----LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
L+ N V+VL AC E G + HS + + + +E ++D + G
Sbjct: 214 GCACLKFNGALLVSVLNACTMVGAFEEG-KWIHSYVEENGLEYDLELGTALIDFYMKCGW 272
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
+ A++ MP + D + A++ I+G + E+ ++ ++ PK
Sbjct: 273 VKGAEKVFNKMPVK-DVATWSAMILGLAINGNNKMALELFEKMEKVGPK 320
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 187/310 (60%), Gaps = 9/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+DSA LF M R+VV+W S+I G+ +NG AI +FK M+ L
Sbjct: 301 LLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT- 359
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L G L LG V ++ N+I LS+ A+I +Y + G +E A
Sbjct: 360 PDEVTMVSVISACGHL---GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 416
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M +DV ++N +IS A++ EA+ + MKE G+ + +TF+ VLTAC+ A
Sbjct: 417 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 476
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G ++F S+ P ++HY C+VDLLGR G L +AK M MP EP A V G+
Sbjct: 477 GLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 531
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH V+L +L EL+P + G +++LSNI+A RW +R+AM + G+
Sbjct: 532 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 591
Query: 301 RKIPAYSLIE 310
+K +S +E
Sbjct: 592 KKTTGWSWVE 601
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
M+ GY K D+++A F+ M +R VVSW ++++G+ +NG EA+ +F M VN +
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM---VNAGI 256
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+E T+V+V+S+C+ + G L + + + I L+ F+ TAL+D+Y K G L+
Sbjct: 257 EPDETTWVTVISACS---SRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDS 313
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A ++F +M ++V TWN+MI+ A N + A+ +F EM K L +E+T V+V++AC
Sbjct: 314 ARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 373
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG + L + ++ + + ++ + R G + +AK + M D
Sbjct: 374 HLGALELGNWVV-RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSY 431
Query: 239 GALLGACKIHG 249
L+ HG
Sbjct: 432 NTLISGFAAHG 442
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 44/248 (17%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V TA++ Y KV LE A R F M + V +WNAM+S A N +EAL +FDEM
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G+ +E T+V V++AC+ L L ++ K + ++D+ + G L
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTA-LLDMYAKFGDL 311
Query: 220 SEAKEFMRSMP-----------------------------------FEPDASVLGALLGA 244
A++ +MP PD + +++ A
Sbjct: 312 DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 371
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA---TDLRKAMVEAGIR 301
C GA++L + V R L E Q K + +S +A + ++R D ++ E R
Sbjct: 372 CGHLGALELGNWVVRFLTENQIK-----LSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426
Query: 302 KIPAYSLI 309
+ +Y+ +
Sbjct: 427 DVVSYNTL 434
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
LLF + L +V +TS++ + + + +++ M G VRP+ Y +L AG
Sbjct: 55 LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCG--VRPDAFVY-PILIKSAG 111
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVC 133
GG+ H ++L+ F+ A+ID+Y ++G + A +VF + + V
Sbjct: 112 T---GGI----GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVA 164
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
WNAM+S E +A +FD M E+ N IT+ A++T A+ + +E F M
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCM 220
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGA 250
+ V + ++ + GL EA M EPD + ++ AC G
Sbjct: 221 PERSVVS-----WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRG- 274
Query: 251 VDLC 254
D C
Sbjct: 275 -DPC 277
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/315 (44%), Positives = 187/315 (59%), Gaps = 8/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
M+ Y K+G + A +LFE M +DVV W +I+G+ ++GC EA+ F+ MM +
Sbjct: 189 MLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNG 248
Query: 59 ---VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
VRPNE T V+VLSSC + G L GK VH Y+ N I ++V +GTAL+D+Y K G
Sbjct: 249 NGKVRPNEITVVAVLSSCGQV---GALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCG 305
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
LE A +VF M KDV WN+MI + EAL +F EM G++ ++ITFVAVLT
Sbjct: 306 SLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLT 365
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
ACA A LV G E+F SM + + P +EHYGC+V+LLGRAG + EA + +RSM EPD
Sbjct: 366 ACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDP 425
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G LL AC+IH V L E+ L+ G YV+LSN++A W +R M
Sbjct: 426 VLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMM 485
Query: 296 VEAGIRKIPAYSLIE 310
+G+ K P S IE
Sbjct: 486 KGSGVEKEPGCSSIE 500
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 53/295 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + ++ LF +V WT IIN F A+ + M+ + ++PN
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQML--THPIQPNAF 122
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG------------ 112
T S+L +C L+ + VH + ++ + +++ T L+D Y
Sbjct: 123 TLSSLLKACT-------LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLF 175
Query: 113 -------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
K G L A +F+ M +KDV WN MI A + EALV
Sbjct: 176 DAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALV 235
Query: 154 MFDE-------MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
F + +R NEIT VAVL++C + +E G + HS + + +
Sbjct: 236 FFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVG 294
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
+VD+ + G L +A++ M + D +++ IHG A+ L HE+
Sbjct: 295 TALVDMYCKCGSLEDARKVFDVMEGK-DVVAWNSMIMGYGIHGFSDEALQLFHEM 348
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +LR + + L Y +G L ++ +F +V W +I++ A
Sbjct: 41 QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTAC----ARAQLVELGLELFHSMLGKFEVVPI 202
AL + +M ++ N T ++L AC ARA HS KF +
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARA---------VHSHAIKFGLSSH 151
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ +VD R G ++ A++ +MP
Sbjct: 152 LYVSTGLVDAYARGGDVASAQKLFDAMP 179
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ K GD+ A LF++M +RD VSW ++I G+ + G EA+ +FK M ++ V+
Sbjct: 182 MVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLM--QMDGVK 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE + +SV+++C L G L GK H YI +N+I ++V +GTAL+D+Y K G ++RA
Sbjct: 240 VNEVSMISVVTACTHL---GALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M K+V TW+ I LA N ++ L +F MK +G+ NEITF++VL C+
Sbjct: 297 LKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVV 356
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G F SM + P +EHYGC+VDL GRAG L EA F+ +MP +P A GA
Sbjct: 357 GFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGA 416
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++L R+L+E++ K+ G YV LSNI+A W+R +++R++M GI
Sbjct: 417 LLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGI 476
Query: 301 RKIPAYSLIE 310
K+P S++E
Sbjct: 477 SKLPGCSVME 486
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 121/278 (43%), Gaps = 42/278 (15%)
Query: 16 LLFENML-----KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
LL+ N + K + + S+I + ++ ++ + ++ + +++ P+ T+ ++
Sbjct: 59 LLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLV 118
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS---- 126
+CA E G VHG ++++ + + LI +Y ++ CL RVF+S
Sbjct: 119 RTCAQSACEAG----PAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKP 174
Query: 127 ---------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
M +D +WNAMI+ A + +EAL +F M+
Sbjct: 175 DLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQ 234
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G++ NE++ ++V+TAC ++ G + H+ + K ++ + +VD+ + G +
Sbjct: 235 MDGVKVNEVSMISVVTACTHLGALDQG-KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNV 293
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
A + M E + +G ++G C E+
Sbjct: 294 DRALKVFWEMN-EKNVYTWSTAIGGLAMNGYGQKCLEL 330
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+ SA +F++M +DVV+W +II G+ +NG EAI +F M
Sbjct: 270 LIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGM--REAGPH 327
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T + VLS+C+ + G L LGK V + + V++ +ALID+Y K G L+ A
Sbjct: 328 PDRVTMIEVLSACSTI---GALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDA 384
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKG-LRANEITFVAVLTACA 178
+RVF+SM K+ +WNAMIS+LA + + +EAL +F M K+ G ++ N+ITF+ VL+AC
Sbjct: 385 VRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACV 444
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ G +LF SM F +VP +EHY C+VDL RAGLL EA + ++ MP +PD VL
Sbjct: 445 HAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVL 504
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC+ D+ V + LE++ + G YV+ S I+A + RW+ + +R M +
Sbjct: 505 GSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQC 564
Query: 299 GIRKIPAYSLIE 310
G+ K P S I+
Sbjct: 565 GVSKTPGCSWID 576
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 157/289 (54%), Gaps = 16/289 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G+M A +F+ M RD+VSW S+I+G+ + G EAI +F M
Sbjct: 169 LITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM--REEGFE 226
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL +C L G L LG+ V G++L ++ ++ +MG+ALID+YGK G L A
Sbjct: 227 PDEMTLVSVLGACGDL---GDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA 283
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF SM KDV TWNA+I+ A N EA+V+F+ M+E G + +T + VL+AC+
Sbjct: 284 RRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTI 343
Query: 181 QLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG +E S G V + ++D+ + G L +A SMP + + S
Sbjct: 344 GALDLGKWVETHASEKGLQHDVYVAS---ALIDMYAKCGSLDDAVRVFESMPHKNEVS-W 399
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE----LQPKHCGRYVVLSN-IHAGL 282
A++ A HG + RR+ + +QP VLS +HAGL
Sbjct: 400 NAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGL 448
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 12/244 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ A L+F + K ++ ++ ++ G + + ++ L + N TY +
Sbjct: 76 DLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGL-KANNFTYPFL 134
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+C N GL GK H + + + ++ +LI +Y + G + A +VF M
Sbjct: 135 FIACG---NVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGD 191
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN+MIS + KEA+ +F EM+E+G +E+T V+VL AC L +LGL
Sbjct: 192 RDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGAC--GDLGDLGLGR 249
Query: 190 F---HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ + K EV M ++D+ G+ G L A+ SMP D A++
Sbjct: 250 WVEGFVLEKKMEVNSYMG--SALIDMYGKCGDLISARRVFDSMP-NKDVVTWNAIITGYA 306
Query: 247 IHGA 250
+GA
Sbjct: 307 QNGA 310
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H +L N I F+ + +IDL L A VF + ++ +N M+ LA+
Sbjct: 50 KQIHAQMLINSIPKPNFLLSKIIDLKD----LAYASLVFNQLTKPNIYAFNVMLRGLATT 105
Query: 146 SREKEALV-MFDEMKEKGLRANEITFVAVLTACARAQ-----------LVELGLE----L 189
++ + V ++ ++K GL+AN T+ + AC + + + GL+ +
Sbjct: 106 WKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYV 165
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE------------AKEF------MRSMPF 231
HS++ + M V D +G L+S KE MR F
Sbjct: 166 NHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGF 225
Query: 232 EPDASVLGALLGAC 245
EPD L ++LGAC
Sbjct: 226 EPDEMTLVSVLGAC 239
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 199/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+GD+ SA L+F+ M RDVV+W+S+I+G+V++G + EA+ +F MM + +
Sbjct: 926 ILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMM-RMGSSK 984
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSVL +CA L G L GK VH YIL + L+V + T+LID+Y K G + A
Sbjct: 985 ANEVTMVSVLCACAHL---GELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDA 1041
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF +K D WNAMI LAS+ +E+L++F +M+E + +EITF+ +L AC+
Sbjct: 1042 WGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDPDEITFLCLLAACS 1101
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ F S L + P EHY C+VD+L RAGL+ +A +F+ M +P SVL
Sbjct: 1102 HGGLVKEAWHFFTS-LKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMLIKPTGSVL 1160
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL C HG ++L VG++L+ELQP + GRYV L+N++A +++ A +R+AM +
Sbjct: 1161 GALFNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFGAARSMREAMEKK 1220
Query: 299 GIRKIPAYSLIE 310
G++KI +S+I+
Sbjct: 1221 GVKKIAGHSIIK 1232
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 48/331 (14%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
D++ A L + W +I GF + ++I V+ ++ + P+ TY
Sbjct: 801 TSDVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSG--FSPDHMTYP 858
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------- 112
+L S + L N +G +H +++ + +F+ LI +YG
Sbjct: 859 FLLKSSSRLSNRE---IGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEM 915
Query: 113 ----------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
K G + A VF M ++DV TW++MI + EAL +FD
Sbjct: 916 PYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFD 975
Query: 157 EMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
+M G +ANE+T V+VL ACA + G ++ H + + + ++D+ +
Sbjct: 976 QMMRMGSSKANEVTMVSVLCACAHLGELNRG-KVVHRYILDVHLPLTVILQTSLIDMYAK 1034
Query: 216 AGLLSEA-KEFMRSMPFEPDASVLGALLGACKIHGAVD----LCHEVGRRLLELQPKHCG 270
G + +A F + + DA + A++G HG + L H++ R E+ P
Sbjct: 1035 CGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKM--RESEIDPDEIT 1092
Query: 271 RYVVLSNI-HAGL--ERWNRATDLRKAMVEA 298
+L+ H GL E W+ T L+++ E
Sbjct: 1093 FLCLLAACSHGGLVKEAWHFFTSLKESGAEP 1123
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY-VSVLSSCAGLVNEGGL 82
R +VS+T+ I G +RN + +F++ N + P+ Y V + + C
Sbjct: 577 RHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGHC--PDVIAYHVLIKALCKAC------ 628
Query: 83 YLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGCLERA----IRVFKSMVIKDVC 133
+ L NE+V SV ++ID + K G ++R +R+++ DV
Sbjct: 629 ---RTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVI 685
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
T+ ++I L ++ R EA+ ++EMK K N ITF+A++ L F M
Sbjct: 686 TYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREM 745
Query: 194 LGKFEVVP 201
K E+ P
Sbjct: 746 EEK-EMEP 752
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 2 IDGYVKNGDMDSAILLFENMLKR----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN 57
I+G ++N +D + LF + DV+++ +I + EA +F M+
Sbjct: 586 IEGLIRNEGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKG- 644
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
++P+ ATY S++ G EG + G + +E V T+LI
Sbjct: 645 -LKPSVATYNSMID---GWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASRRP 700
Query: 118 ERAIRVFKSMVIKDV----CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
AI + M KD T+ A+I L + EALV F EM+EK + + ++++
Sbjct: 701 SEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPDSAVYLSL 760
Query: 174 LTACARAQLVELGLELFHSML--GKFEV 199
+++ ++ + G +F M+ G+F V
Sbjct: 761 VSSFLSSENISAGFGIFREMVHKGRFPV 788
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 1 MIDGYVKNGDMDSA----ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
MIDG+ K G++D + ++E+ DV+++TS+I+G + EAI + M G
Sbjct: 655 MIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKD 714
Query: 57 NLVRPNEATYVSVLSSCAGLVNEG 80
PN T+++++ GL N G
Sbjct: 715 --CYPNRITFMALIQ---GLCNCG 733
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK GD A LF+ M +R+VVSWT++I G+ + +A+ VF+ M V +
Sbjct: 150 MIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRM--QVEGIE 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +SVL++C L G + LG+ VH +++R + + + ++ID+Y K GC+E+A
Sbjct: 208 ADGVALLSVLAACGDL---GAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKA 264
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M K V TW +I+ A + +A+ MF M+ + + N +TF+A+L+AC+
Sbjct: 265 VEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHV 324
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L +LG F+ M+ ++ + P +EHYGC+VDLLGRAG L EA++ +++MP + +A++ GA
Sbjct: 325 GLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGA 384
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A + HG L + L+EL+P + G Y++LSNI A ERW + LRKAM E G+
Sbjct: 385 LLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGL 444
Query: 301 RKIPAYSLIE 310
R +P S IE
Sbjct: 445 RNVPGASSIE 454
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V +I Y K G A +F +M ++V +W +I A R ++A+ +F
Sbjct: 141 VRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRR 200
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLG 214
M+ +G+ A+ + ++VL AC V+LG E H + G + +P+M ++D+
Sbjct: 201 MQVEGIEADGVALLSVLAACGDLGAVDLG-EWVHRFVVRRGLCQEIPLM---NSIIDMYM 256
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G + +A E M E L+ +HG
Sbjct: 257 KCGCIEKAVEVFEGME-EKSVVTWTTLIAGFALHG 290
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ K GD+ A LF+ M +D ++W ++I+G+V+ G EA+ +F N+M V+
Sbjct: 183 MVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLF-NLMQREG-VK 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE + VSVLS+C+ L G L G+ H YI RN++ +++ +GTALID+Y K G + +A
Sbjct: 241 VNEVSMVSVLSACSHL---GALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M K+V TW++ I LA N ++ L +F MK+ ++ NEITFV+VL C+
Sbjct: 298 MEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVV 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM + + P +EHYGC+VDL GRAG L EA F+ SMP P GA
Sbjct: 358 GLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGA 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKI+ +++ R+++EL+ K+ G YV+LSNI+A + W+R +++R+ M G+
Sbjct: 418 LLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGV 477
Query: 301 RKIPAYSLIE 310
RK P S+IE
Sbjct: 478 RKQPGCSVIE 487
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 119/272 (43%), Gaps = 36/272 (13%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+ +N + ++ S+I ++ + + ++ + + P+ T+ ++ + A L
Sbjct: 65 VLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQL 124
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS---------- 126
+ G G VHG ++ + + LI +Y ++G L+ RVF S
Sbjct: 125 LAHG---TGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQT 181
Query: 127 ---------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
M KD WNAMIS + +EAL +F+ M+ +G++
Sbjct: 182 AMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKV 241
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
NE++ V+VL+AC+ ++ G H+ + + ++ + ++D+ + G +++A E
Sbjct: 242 NEVSMVSVLSACSHLGALDQG-RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEV 300
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
M E + + +G ++GA + C E+
Sbjct: 301 FWGMK-EKNVYTWSSAIGGLAMNGAGEKCLEL 331
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 190/312 (60%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GDM +A ++F + D V+WTS+I+G V NG +A+ ++ M + V
Sbjct: 71 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM--RQSRVM 128
Query: 61 PNEATYVSVL--SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T+ +++ SSC + +G +Q+H +++ + V F+GT+L+D+Y K G +E
Sbjct: 129 PDEYTFATLIKASSCVTALEQG-----RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 183
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+FK M ++++ WNAM+ LA + +EA+ +F MK G+ + ++F+ +L+AC+
Sbjct: 184 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 243
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L E HSM + + P +EHY C+VD LGRAGL+ EA + + +MPF+ AS+
Sbjct: 244 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 303
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALLGAC+I G V+ V RL L+P YV+LSNI+A RW+ TD RK M
Sbjct: 304 RALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 363
Query: 299 GIRKIPAYSLIE 310
++K P +S I+
Sbjct: 364 NVKKDPGFSWID 375
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ ++ T + +C LV L GKQ+H + ++ + + + ++D+Y K G +
Sbjct: 27 KSDQITLATAAKACGCLV---LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVN 83
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF + D W +MIS N E +AL ++ M++ + +E TF ++ A +
Sbjct: 84 AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSC 143
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E G +L H+ + K + V +VD+ + G + +A + M
Sbjct: 144 VTALEQGRQL-HANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM 192
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 9/307 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY NGD+D A LF+ M ++DVVSWT +++G+ R G +A+ +F+ M VR
Sbjct: 261 MVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGD--VR 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
PNE T VSV S+CA L L G+ H +I + +VL +G ALID+Y K G +
Sbjct: 319 PNEVTMVSVFSACARLA---ALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPD 375
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF+S+ K+V WNA+I+ LA+N + + +F++MK + + +TFV+VL ACA
Sbjct: 376 VAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACA 435
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
RA LV+ G F SM F V P ++HYGC+VDLLGRAGL+ EA+E +R MP PD VL
Sbjct: 436 RAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVL 495
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGR--YVVLSNIHAGLERWNRATDLRKAMV 296
LLGAC++ D+ V RR+ L K R Y ++S++ A +RW A + M
Sbjct: 496 ATLLGACRVRRRPDVAERVRRRIQSLNTKQPSRESYFMISDVRATADRWAVALKAKGFMH 555
Query: 297 EAGIRKI 303
+ I K+
Sbjct: 556 KYNIMKL 562
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 17/260 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY + G++ +A F+ M +R+ SW++++ + G + V ++M
Sbjct: 166 VVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAG----QLDVARDMFDRAPAAG 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ S++ AGL G L L +++ + +V A++ Y G ++ A
Sbjct: 222 RSVVTWNSMV---AGLARHGLLPLARKMFDEMPARNLV----SWNAMVRGYAVNGDVDGA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +M KDV +W M+S A R +AL +F M+ +R NE+T V+V +ACAR
Sbjct: 275 RELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARL 334
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY---GCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
++ G H+ +GK +V + + + ++D+ + G A + RS+ + + S
Sbjct: 335 AALKEG-RWAHAFIGKRGMV-LDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRK-NVSA 391
Query: 238 LGALLGACKIHGAVDLCHEV 257
AL+ +G C +V
Sbjct: 392 WNALIAGLAANGDARRCIDV 411
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 185/315 (58%), Gaps = 8/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNVN 57
+++ Y K G +D A LF+ M +R+V+SW+ +ING+V G + EA+ +F+ M N
Sbjct: 134 VVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEA 193
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VRPNE T +VLS+C L G L GK VH YI + + + + +GTALID+Y K G L
Sbjct: 194 FVRPNEFTMSTVLSACGRL---GALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 118 ERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLT 175
ERA RVF ++ KDV ++AMI LA E +F EM + N +TFV +L
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC L+ G F M+ +F + P ++HYGC+VDL GR+GL+ EA+ F+ SMP EPD
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G+LL ++ G + C +RL+EL P + G YV+LSN++A RW +R M
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEM 430
Query: 296 VEAGIRKIPAYSLIE 310
GI K+P S +E
Sbjct: 431 EVKGINKVPGCSYVE 445
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 45/275 (16%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGE---AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78
LK + W II V N + I V+ M + V P+ T+ +L S N
Sbjct: 20 LKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNH--RVSPDFHTFPFLLPS---FHN 74
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
L LG++ H IL + F+ T+L+++Y G L A RVF KD+ WN++
Sbjct: 75 PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSV 134
Query: 139 ISSLASNSREKEALVMFDEMKEKG------------------------------------ 162
+++ A +A +FDEM E+
Sbjct: 135 VNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAF 194
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R NE T VL+AC R +E G + H+ + K+ V + ++D+ + G L A
Sbjct: 195 VRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERA 253
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
K ++ + D A++ ++G D C ++
Sbjct: 254 KRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 196/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G K G++D + LF+ ML R+ VSW S+I+G+VR G F EA+ +F M ++
Sbjct: 169 MIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEG--IK 226
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS+L++CA L G L G+ +H YI++N L+ + TA+ID+Y K G +++A
Sbjct: 227 PSEFTMVSLLNACACL---GALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKA 283
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VFKS K + WN++I LA + R EA+ +F +++ L+ + ++F+ VLTAC A
Sbjct: 284 LQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHA 343
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M +++ P ++HY C+VD+LGRAGLL EA+E ++SMP PDA + G+
Sbjct: 344 GMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGS 403
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ +G +++ + +R+ EL P +++LSN++A + A + R ++ E +
Sbjct: 404 LLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQM 463
Query: 301 RKIPAYSLIE 310
K P SLIE
Sbjct: 464 DKEPGCSLIE 473
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 39/255 (15%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD++ A L+F + ++ W +II GF ++ AI +F +MM +P TY S
Sbjct: 43 GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V + A L G + G Q+HG +++ + F+ ++++Y G L A R+F
Sbjct: 103 VFKAYAQL---GLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGAT 159
Query: 129 IKDVCTWNAMISSLAS----------------------NS---------REKEALVMFDE 157
DV TWN MI LA NS R EA+ +F
Sbjct: 160 GFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSR 219
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGR 215
M+E+G++ +E T V++L ACA + G E H + K F + I+ ++D+ +
Sbjct: 220 MQEEGIKPSEFTMVSLLNACACLGALRQG-EWIHDYIVKNNFALNSIV--ITAIIDMYSK 276
Query: 216 AGLLSEAKEFMRSMP 230
G + +A + +S P
Sbjct: 277 CGSIDKALQVFKSAP 291
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G ++ A +F+ M ++D VSW +++ + + GC E + +F M V
Sbjct: 198 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV- 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + VLS+CA + L G Q+HG ++R + F+G AL+ +Y K G +E A
Sbjct: 257 -NRSAFACVLSTCADIA---ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +DV +WN MI+ A + KEAL +FD M+ + ++IT V VL AC+ +
Sbjct: 313 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F+SM F V EHY C++DLLGRAG L+EA + M+ MPFEPD+++ GA
Sbjct: 373 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IH +L ++ EL+P++ G YV+LSNI+A +W A +R M E G+
Sbjct: 433 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 492
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 493 KKVPGFSWIE 502
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 62/337 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GDM A LF+ RDV +WT++++G+ +NG EA VF M
Sbjct: 105 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM-------- 156
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + A + + K++ + RN V ++ Y + G LE
Sbjct: 157 -PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN-----VASWNTMLTGYAQAGMLEE 210
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M KD +W AM+++ + +E L +F EM G N F VL+ CA
Sbjct: 211 AKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCAD 270
Query: 180 AQLVELGLELF---------------HSMLGKFEVVPIMEH---------------YGCV 209
+E G++L +++L + ME + +
Sbjct: 271 IAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTM 330
Query: 210 VDLLGRAGLLSEAKE---FMRSMPFEPDASVLGALLGACKIHGAVD--------LCHEVG 258
+ R G EA E MR+ +PD L +L AC G V+ + H+ G
Sbjct: 331 IAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFG 390
Query: 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ +P+H Y + ++ R A DL K M
Sbjct: 391 ---VTAKPEH---YTCMIDLLGRAGRLAEAHDLMKDM 421
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 28/273 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +G + A F+ ++D VSW ++ +VRNG EA +F +
Sbjct: 12 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR-------- 63
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + +G V G + +++ + ++V M + Y + G + A
Sbjct: 64 -TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM----VSGYARRGDMVEA 118
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + ++DV TW A++S A N +EA +FD M E+ N +++ A++ A +
Sbjct: 119 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQR 174
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++++ ELF+ M + + + ++ +AG+L EAK +MP + DA A
Sbjct: 175 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAA 228
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273
+L A G C E +L ++ CG +V
Sbjct: 229 MLAAYSQGG----CSEETLQLF-IEMGRCGEWV 256
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F+ M +D+VSWT++I+ +G E +F+++MG+ VR
Sbjct: 237 LLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSG--VR 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ VL++CA L E +GK+VHGY+ R F +AL+ +Y K G E A
Sbjct: 295 PNEYTFAGVLNACADLAAE---QMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETA 351
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M D+ +W ++I A N + AL F+ + G + +EITFV VL+AC A
Sbjct: 352 RRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHA 411
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++GLE FHS+ K +V +HY CV+DLL R+G EA+ + +MP +PD + +
Sbjct: 412 GLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWAS 471
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IHG ++L + L EL+P++ Y+ LSNI+A W T +R M GI
Sbjct: 472 LLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGI 531
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 532 VKKPGKSWIE 541
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 136/285 (47%), Gaps = 9/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G ++ A LF+ M RD SW ++I+G+V G + EA+ +F+ M N
Sbjct: 135 MISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN----E 190
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ ++ S+ A L GK++HGY++R+ + L + TAL+DLYGK G L A
Sbjct: 191 SSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEA 250
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KD+ +W MI + R+KE +F ++ G+R NE TF VL ACA
Sbjct: 251 RGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADL 310
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++G E+ H + + P +V + + G A+ MP PD +
Sbjct: 311 AAEQMGKEV-HGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTS 368
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGL 282
L+ +G D+ + LL +P VLS HAGL
Sbjct: 369 LIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGL 413
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ +P+ Y +++++C + L LGK+VH + + + + + LI +Y K G L
Sbjct: 58 IPQPSPRLYSTLIAAC---LRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSL 114
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +F + KD+C+WN MIS A+ R ++A +FDEM + + ++ AV++
Sbjct: 115 VDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGY 170
Query: 178 ARAQLVELGLELFHSM 193
L+LF M
Sbjct: 171 VSQGWYMEALDLFRMM 186
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 190/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY + G++ +A LF+ M +R VVSW +I+G+ +NG + EAI +F MM + V
Sbjct: 205 MVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM-QMGDVL 263
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LGK VH Y +N+I + +G+AL+D+Y K G +E+A
Sbjct: 264 PNRVTLVSVLPAISRL---GVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKA 320
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I+VF+ + +V TWNA+I LA + + + M++ G+ +++T++A+L+AC+ A
Sbjct: 321 IQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHA 380
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M+ + P +EHYGC+VDLLGRAG L EA+E + +MP +PD + A
Sbjct: 381 GLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKA 440
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA K+H + + L+++ P G YV LSN++A W+ +R M + I
Sbjct: 441 LLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDI 500
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 501 RKDPGCSWIE 510
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 60/326 (18%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-EAICVFKNMMGNVNLVRPNEATYVS 68
D+ A+ +F+ + +R+ +W ++I +A+ VF M+ V PN+ T+ S
Sbjct: 64 DIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEAT-VEPNQFTFPS 122
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS----------------------- 100
VL +CA + L GKQVHG +L+ +E V++
Sbjct: 123 VLKACAVMAR---LAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNV 179
Query: 101 -------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
V + ++D Y +VG L+ A +F M + V +WN MIS
Sbjct: 180 EGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISG 239
Query: 142 LASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLEL-FHSMLGKFEV 199
A N KEA+ +F M + G + N +T V+VL A +R ++ELG + ++ K +
Sbjct: 240 YAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRI 299
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
++ +VD+ + G + +A + +P + + A++G +HG +
Sbjct: 300 DDVLG--SALVDMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGGLAMHGKANDIFNYLS 356
Query: 260 RLLE--LQPKHCGRYVVLSNI-HAGL 282
R+ + + P +LS HAGL
Sbjct: 357 RMEKCGISPSDVTYIAILSACSHAGL 382
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+G++K GDM A LF M +++VVSWT+++NGF +NG +A+ F M+ R
Sbjct: 247 LINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEG--AR 304
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VS LS+CA + G L G ++H Y+ N L++ +GTAL+D+Y K G +E A
Sbjct: 305 PNDYTIVSALSACAKI---GALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHA 361
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF K + W+ MI A + ++AL F+ MK G + + + F+AVL AC+ +
Sbjct: 362 EKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHS 421
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V GL+ F +M + + P M+HY VVD+LGRAG L EA +F+R+MP PD V GA
Sbjct: 422 GQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGA 481
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC+ H V++ ++LL+L+PKH G YV LSN +A + RW+ A +R +M + G
Sbjct: 482 LFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGA 541
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 542 HKDPGWSFIE 551
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 131/343 (38%), Gaps = 108/343 (31%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D AI +F+ ++ + ++I G N F +I F M+ + P+ T+ VL
Sbjct: 90 VDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWK--ISPDRLTFPFVL 147
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV---------------- 114
S A L N G +G+ +H IL+ + F+ +L+D+Y KV
Sbjct: 148 KSAAALSNGG---VGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPES 204
Query: 115 -------------------GCLERAIRVFKSMVIKDVCTWNA------------------ 137
G L +A +F SM KD +WN+
Sbjct: 205 VKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELF 264
Query: 138 -------------MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M++ + N ++AL F M E+G R N+ T V+ L+ACA+ ++
Sbjct: 265 VKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALD 324
Query: 185 LGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAK-------------------- 223
GL + + + G F++ ++ +VD+ + G + A+
Sbjct: 325 AGLRIHNYLSGNGFKLNLVIG--TALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWG 382
Query: 224 --------------EFMRSMPFEPDASVLGALLGACKIHGAVD 252
E+M+ +PD+ V A+L AC G V+
Sbjct: 383 WAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVN 425
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+Q+HG + R + S + T I + ++ AI +F+ +K+ +NA+I LA N
Sbjct: 59 RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
SR + ++ F M + + + +TF VL + A
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAA 151
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI Y + AI LF M + ++ W +ING V + + EA+ +F M ++ V
Sbjct: 147 MIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEM--QLSGV 204
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ ++ T S+L +C L G L LGK +H YI + +I + V +GTAL+D+Y K G +E
Sbjct: 205 KGDKVTMASLLIACTHL---GALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF+ M KDV TW A+I LA + +AL +F EM+ ++ + ITFV VL AC+
Sbjct: 262 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 321
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+ F+SM K+ + P +EHYGC+VD+LGRAG ++EA++ +++MP PD VL
Sbjct: 322 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 381
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+IHG + + ++L+EL PK+ G YV+LSNI++ ++ W A +R+ MVE
Sbjct: 382 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 441
Query: 300 IRKIPAYSLIE 310
I+K P S IE
Sbjct: 442 IKKPPGCSAIE 452
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 137/312 (43%), Gaps = 49/312 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A L+F + + SII G+ +AI ++ MM + + P+ T+
Sbjct: 25 SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMM--LQGLDPDRFTFP 82
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
S+ SC G L GKQ+H + + ++ L+++Y GCL A +VF M
Sbjct: 83 SLFKSC------GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 136
Query: 128 VIKDVCTWNAMISSLAS--------------------------------NSREKEALVMF 155
V K V +W MI + A +S +EAL +F
Sbjct: 137 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLF 196
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
+EM+ G++ +++T ++L AC +ELG + H + K ++ + +VD+ +
Sbjct: 197 NEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAK 255
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGR 271
G + A + MP E D AL+ + G A++L HE+ ++ E++P
Sbjct: 256 CGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEM--QMSEVKPDAITF 312
Query: 272 YVVLSNI-HAGL 282
VL+ HAGL
Sbjct: 313 VGVLAACSHAGL 324
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 198/315 (62%), Gaps = 12/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY + G+++ A LF +M +RDV+SWT++I+G+ + G EA+ +FK M +G
Sbjct: 287 MVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALG---- 342
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQV-HGYILRNEIVLSVFMGTALIDLYGKVGCL 117
++P+E T V+VLS+CA L G LGK++ H YI + + A++D+Y K G +
Sbjct: 343 IKPDEVTLVAVLSACARL---GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSI 399
Query: 118 ERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A+ +F+ + +K +N+MI+ LA + + A+ +F E+ GL+ +E+TFV VL
Sbjct: 400 DSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLC 459
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC + L+E G +LF SM + + P MEHYGC+VDLLGR G L EA + ++ MPFE ++
Sbjct: 460 ACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS 519
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ ALL AC+ HG V + G++LLE++ +H RYV+LSNI A +W A +RK M
Sbjct: 520 VIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVM 579
Query: 296 VEAGIRKIPAYSLIE 310
+ GIRK P +S IE
Sbjct: 580 EDHGIRKPPGWSYIE 594
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 43/263 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G+++ A LF+ L RD+VS+ ++I G+ A+C+F M + +
Sbjct: 152 LIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSG--IL 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
P+E T+V++ S C+ ++NE +GKQ+H + +N I ++ + +A++D+Y K G +
Sbjct: 210 PDEFTFVALFSVCS-VLNEPN--VGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLIN 266
Query: 119 RAIRVFKSMVI--------------------------------KDVCTWNAMISSLASNS 146
A RVF +M +DV +W AMIS +
Sbjct: 267 IAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAG 326
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVPIME 204
+ EAL +F EM+ G++ +E+T VAVL+ACAR +LG L+H + G F I+
Sbjct: 327 QCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILT 386
Query: 205 HYGCVVDLLGRAGLLSEAKEFMR 227
V+D+ + G + A E R
Sbjct: 387 --AAVMDMYAKCGSIDSALEIFR 407
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 145/297 (48%), Gaps = 11/297 (3%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K+G +D + LLF + ++ W ++I G+ R+ EAI ++ +M+ + PN T+
Sbjct: 57 KDG-LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAK-GIAPPNNFTF 114
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L+SCA L L G +VH +I+++ +F+ ALI LY G L A +F
Sbjct: 115 PFLLNSCARL---SSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDE 171
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+++D+ ++N MI A ++ + AL +F EM+ G+ +E TFVA+ + C+ +G
Sbjct: 172 SLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVG 231
Query: 187 LELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
++ + + + +VD+ + GL++ A+ +M A+ +++
Sbjct: 232 KQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGY 291
Query: 246 KIHGAVDLCHEVGRRLL-ELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
G ++ V R+L + + + + + ++ + + A +L K M GI+
Sbjct: 292 ARCGEIN----VARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGC---LERAIRVFKSMVIKDVCTWNAMISS 141
G Q+H + N + +F + LI + +G L+ + +F + ++ WN MI
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 142 LASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+ + +EA+V++ M KG+ N TF +L +CAR +E G E+ HS + K
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV-HSHIIK 139
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +DSA +FE + +DV+SW S+I G+ +NG EAI V+ +M V
Sbjct: 383 IIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV- 441
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L++ + L G L G + HG +++N + +F+ T L+D+YGK G L A
Sbjct: 442 PNQGTWVSILTAHSQL---GALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADA 498
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + +WNA+IS + +A+ +F EM+ +G++ + ITFV++L+AC+ +
Sbjct: 499 LSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHS 558
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M + + P ++HYGC+VDL GRAG L +A F+++MP PD SV GA
Sbjct: 559 GLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGA 618
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V+L V LL+++ ++ G YV+LSNI+A L W ++R + G+
Sbjct: 619 LLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGL 678
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 679 KKTPGWSSIE 688
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 153/289 (52%), Gaps = 16/289 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G++ SA +F M RD+VSW S++ F +N A+ V+ N M ++ +V
Sbjct: 281 LINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVY-NKMHSIGVV- 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T VS+ S A L G + +HG++ R L + +G A+ID+Y K+G ++
Sbjct: 339 PDLLTLVSLASVAAEL---GNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDS 395
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACA 178
A +VF+ + +KDV +WN++I+ + N EA+ ++ M+ G N+ T+V++LTA +
Sbjct: 396 ARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHS 455
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ ++ G++ ++ F I C+VD+ G+ G L++A +P + S
Sbjct: 456 QLGALKQGMKAHGQLIKNFLYFDIFVS-TCLVDMYGKCGKLADALSLFYEVPHQSSVS-W 513
Query: 239 GALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
A++ +HG AV L E+ ++P H +LS H+GL
Sbjct: 514 NAIISCHGLHGYGLKAVKLFKEMQSE--GVKPDHITFVSLLSACSHSGL 560
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y GD+ A L F+ + +DV +W S+I+ + R G F A+ F + + + ++
Sbjct: 81 LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFL-STSFLQ 139
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ V+ +C G L G++VH +L+ V++ + I Y + G + A
Sbjct: 140 SDHYTFPPVIRAC------GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLA 193
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F +M+I+D+ TWNAMIS N + EAL +FDEM+ K + + +T ++L C +
Sbjct: 194 CNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQ 252
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 15/235 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y + G + A LF+NM+ RD+ +W ++I+GF NG EA+ VF M V
Sbjct: 180 FIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEM--RFKSVS 237
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T S+L C L + + G +H Y ++ + +F+ ALI++Y K G L A
Sbjct: 238 MDSVTISSLLPICVQLDD---IISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSA 294
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++D+ +WN+++++ N + AL ++++M G+ + +T V++ + A
Sbjct: 295 ETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA-- 352
Query: 181 QLVELGLELFHSMLGKFEV-----VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
ELG L + F + + ++D+ + G + A++ +P
Sbjct: 353 ---ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLP 404
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
++L KQ+H ++ + S+F+ LI+ Y +G + A F + KDV TWN+MIS+
Sbjct: 56 VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115
Query: 142 LASNSREKEALVMFDE-MKEKGLRANEITFVAVLTAC 177
A A+ F+E + L+++ TF V+ AC
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC 152
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV +G+M A LF+ M +RDVVSW++II G+V+ GCF EA+ F M+ +
Sbjct: 187 LIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGP--K 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS L++C+ LV L GK +H YI + EI ++ + ++ID+Y K G +E A
Sbjct: 245 PNEYTLVSALAACSNLV---ALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESA 301
Query: 121 IRVF-KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF + V + V WNAMI A + EA+ +F++MK + + N++TF+A+L AC+
Sbjct: 302 SRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSH 361
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+VE G F M+ + + P +EHYGC+VDLL R+GLL EA++ + SMP PD ++ G
Sbjct: 362 GYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWG 421
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR-KAMVEA 298
ALL AC+I+ ++ + +GR + + P H G +V+LSNI++ RWN A LR K +
Sbjct: 422 ALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISR 481
Query: 299 GIRKIPAYSLIE 310
+KIP S IE
Sbjct: 482 DRKKIPGCSSIE 493
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 121/266 (45%), Gaps = 39/266 (14%)
Query: 17 LFENMLKRDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
LF+ + + D+ + ++I + + C I VF+++ ++ L PN ++V S+C
Sbjct: 69 LFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLI-VFRSLTQDLGLF-PNRYSFVFAFSACG 126
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
N G+ G+QV + ++ + +VF+ ALI +YGK G + + +VF+ V +D+ +
Sbjct: 127 ---NGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYS 183
Query: 135 WNAMISS------------LASNSREK-------------------EALVMFDEMKEKGL 163
WN +I++ L RE+ EAL F +M + G
Sbjct: 184 WNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGP 243
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ NE T V+ L AC+ ++ G + H+ +GK E+ ++D+ + G + A
Sbjct: 244 KPNEYTLVSALAACSNLVALDQG-KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESAS 302
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
+ + A++G +HG
Sbjct: 303 RVFFEHKVKQKVWLWNAMIGGFAMHG 328
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 190/312 (60%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GDM +A ++F + D V+WTS+I+G V NG +A+ ++ M + V
Sbjct: 433 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM--RQSRVM 490
Query: 61 PNEATYVSVL--SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T+ +++ SSC + +G +Q+H +++ + V F+GT+L+D+Y K G +E
Sbjct: 491 PDEYTFATLIKASSCVTALEQG-----RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 545
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+FK M ++++ WNAM+ LA + +EA+ +F MK G+ + ++F+ +L+AC+
Sbjct: 546 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L E HSM + + P +EHY C+VD LGRAGL+ EA + + +MPF+ AS+
Sbjct: 606 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 665
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALLGAC+I G V+ V RL L+P YV+LSNI+A RW+ TD RK M
Sbjct: 666 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 725
Query: 299 GIRKIPAYSLIE 310
++K P +S I+
Sbjct: 726 NVKKDPGFSWID 737
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G M A LLF+ M +RDVV W ++ G+V+ G EA +F + + +R
Sbjct: 224 LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF--HRSGLR 281
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +L+ C L LGKQVHG +++ + V + +L+++Y K+GC A
Sbjct: 282 PDEFSVQLILNGCL-WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFA 340
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF M D+ +WN+MISS A +S E+E++ +F ++ +GL+ + T ++ A A
Sbjct: 341 REVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 28/279 (10%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFV-----RNGCFGEAICVFKNMMGNVNLV 59
Y K G + SA +F+ +RD+V+W +I+ + +G E + +F+ + +L
Sbjct: 122 YSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR--LLRASLG 179
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
T VL C +N G L+ + VHGY ++ + VF+ AL+++Y K G +
Sbjct: 180 STTRMTLAPVLKLC---LNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 236
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC-- 177
A +F M +DV WN M+ EKEA +F E GLR +E + +L C
Sbjct: 237 ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLW 296
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A +ELG ++ H + K + + +V++ + G A+E M D
Sbjct: 297 AGTDDLELGKQV-HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLIS 354
Query: 238 LGALLGAC--------KIHGAVDLCHEVGRRLLELQPKH 268
+++ +C ++ +DL HE L+P H
Sbjct: 355 WNSMISSCAQSSLEEESVNLFIDLLHE------GLKPDH 387
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 12/254 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G A +F +M D++SW S+I+ ++ E++ +F +++ ++
Sbjct: 327 LVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG--LK 384
Query: 61 PNEATYVSVL-----SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
P+ T S+ +C LV L GKQ+H + ++ + + + ++D+Y K G
Sbjct: 385 PDHFTLASITLATAAKACGCLV---LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG 441
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A VF + D W +MIS N E +AL ++ M++ + +E TF ++
Sbjct: 442 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 501
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
A + +E G +L H+ + K + V +VD+ + G + +A + M +
Sbjct: 502 ASSCVTALEQGRQL-HANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NI 559
Query: 236 SVLGALLGACKIHG 249
++ A+L HG
Sbjct: 560 ALWNAMLVGLAQHG 573
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
++ L LGK H I+ + F+ L+ +Y K G L A +VF + +D+ TWN
Sbjct: 88 ISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWN 147
Query: 137 AMISSLAS-----NSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A++ + A+ + +E L +F ++ +T VL C
Sbjct: 148 AILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLC 193
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K G ++ A +F+ M +++V+W S+I G+V N + + VFK M+ + VR
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIES--RVR 292
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + SVL C+ L L LG+Q+H + ++ + T+LI +Y K G L+ A
Sbjct: 293 PNPLSLSSVLLGCSNL---SALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KDV TWNAMIS A + ++AL +FD+M+ ++ + ITFVAV+ AC A
Sbjct: 350 WKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHA 409
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+LG++ F SM +F + HY CV+DLLGRAG L EA ++ MPF P A++ G
Sbjct: 410 GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGT 469
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +DL R LL L P YV L+NI+A +W++ +RK M E +
Sbjct: 470 LLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNV 529
Query: 301 RKIPAYSLIE 310
KIP YS IE
Sbjct: 530 VKIPGYSWIE 539
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 22/267 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y+++ + +A+ F M +D+ SW ++I+GF +NG +A +F M
Sbjct: 142 MLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM-------- 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS + +G V G L ++++ +N + SV + TA++ Y K G +E A
Sbjct: 194 -PEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKVELA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F+ M +K++ TWN+MI+ N R ++ L +F M E +R N ++ +VL C+
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG ++ H ++ K + ++ + + G L A + MP D A
Sbjct: 309 SALPLGRQM-HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNA 366
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPK 267
++ HGA GR+ L L K
Sbjct: 367 MISGYAQHGA-------GRKALHLFDK 386
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNS-REKEALVMFDEMKEKGLRANEITFVAVLT 175
LE A VF+ M ++ TWN M+S + + KEA +FD++ E + +++ +L
Sbjct: 89 LESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVSYNIMLV 144
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
R+ V+ L F+ M V + + ++ + G + +A + MP E +
Sbjct: 145 CYLRSYGVKAALAFFNKM-----PVKDIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNG 198
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRL 261
A++ HG ++ E+ + +
Sbjct: 199 VSWSAMISGYVEHGDLEAAEELYKNV 224
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 197/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LFE + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 264 LIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--T 321
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + +G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 322 PNDVTMLSILPACAHL---GAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIE 378
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF S++ K + +WNAMI A + R + +F M++ G+ ++ITFV +L+AC+
Sbjct: 379 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACS 438
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 439 HSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 498
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + L++++P++ G YV+LSNI+A RWN + R + +
Sbjct: 499 CSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDK 558
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 559 GMKKVPGCSSIE 570
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 141/263 (53%), Gaps = 9/263 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G +++A +F+ + +DVVSW ++I+G+ G + EA+ +FK+MM VR
Sbjct: 163 LIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN--VR 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+CA G + LG+QVH +I + ++ + ALIDLY K G LE A
Sbjct: 221 PDESTMVTVVSACA---QSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETA 277
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 278 CGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 337
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G H + K V ++D+ + G + A + S+ S
Sbjct: 338 GAIDIG-RWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSW 395
Query: 239 GALLGACKIHGAVDLCHEVGRRL 261
A++ +HG D ++ R+
Sbjct: 396 NAMIFGFAMHGRADASFDIFSRM 418
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 38/262 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 44 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLL-PNSYTFPFLLKSC 101
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------- 126
A G+Q+HG++L+ L +++ T+LI +Y + G LE A +VF
Sbjct: 102 A---KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVV 158
Query: 127 ------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +KDV +WNAMIS A KEAL +F +M +
Sbjct: 159 SYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 218
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T V V++ACA++ +ELG ++ HS + ++ ++DL + G L A
Sbjct: 219 VRPDESTMVTVVSACAQSGSIELGRQV-HSWIDDHGFGSNLKIVNALIDLYSKCGELETA 277
Query: 223 KEFMRSMPFEPDASVLGALLGA 244
+P++ D L+G
Sbjct: 278 CGLFEGLPYK-DVISWNTLIGG 298
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AI VF+++ ++ WN M A +S AL ++ M GL N TF +L +
Sbjct: 41 LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
CA+++ + G ++ +L GC +DL L+S
Sbjct: 101 CAKSKAFKEGQQIHGHVL----------KLGCDLDLYVHTSLIS 134
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 196/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A +F+ ++ +D+V+W ++I G+ +NG EAI +F +M + +RP++
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM--RIAGMRPDKI 356
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VLS+C+ + G L LG ++ GY R + +V++GTAL+D+Y K G L++AI VF
Sbjct: 357 TLAGVLSACSAV---GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ M K+V +WNA+I LA N R EA+ F M+ E+GL+ ++ITF+ VL+AC A LV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VDLL R+G L EA +F+ +P + DA +LGALL
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A +R + + +R M E G+ K
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593
Query: 304 PAYSLIE 310
P S +E
Sbjct: 594 PGCSWVE 600
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D +A +F+ + RDVVSW +++ + R G GE +F++M+ V
Sbjct: 193 LITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKE-GTVA 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VL++C ++G L LG+ V + + + +G+AL+ +Y K G + A
Sbjct: 252 PNAVTVAVVLAACR---DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +++ KD+ WNAMI+ A N EA+ +F M+ G+R ++IT VL+AC+
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG EL + S G + V + +VD+ + G L +A E R MP + AS
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGT---ALVDMYAKCGDLDKAIEVFRKMPCKNVAS-W 424
Query: 239 GALLGACKIHGAVD--LCH-EVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
AL+ +G D + H ++ R L+P VLS +HAGL +RW
Sbjct: 425 NALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 47/236 (19%)
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+LI +Y + A +VF + +DV +WNAM+ + E MF +M ++G A
Sbjct: 192 SLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVA 251
Query: 166 NEITFVAVLTACARAQ----------------LVELGLELFHSMLGKF----EVVPIMEH 205
VAV+ A R Q +E+ + ++LG + E+
Sbjct: 252 PNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRV 311
Query: 206 YGCVVD---------LLGRA--GLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAV 251
+ ++D + G A G+ +EA SM PD L +L AC GA+
Sbjct: 312 FDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGAL 371
Query: 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWNRATDLRKAMVEAGIRKIP 304
+L E+ + R + SN++ G ++ + + DL KA +E RK+P
Sbjct: 372 ELGSELD--------GYASRRGLYSNVYVGTALVDMYAKCGDLDKA-IEV-FRKMP 417
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 184/309 (59%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+MD A +F+ M +DVV+W +++ G+ NG EA+ +F M V +RP
Sbjct: 219 VDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAM--QVEGMRP 276
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ T LS+C L G L LG++V G + +E++ + +GTALID+Y K G A
Sbjct: 277 DCYTVAGALSACTRL---GALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAW 333
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M +D+ WNAMI L EK A + +MK+ G+ N+ TF+ +L +C
Sbjct: 334 MVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTG 393
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
LV+ G F +M + + P +EHYG +VDLL RAGLL EA + ++ MP E +A V GAL
Sbjct: 394 LVKDGRRYFRNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGAL 453
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH DL V ++L++L+P + G YVVLSNI++ RW A LR M G+
Sbjct: 454 LGGCKIHRNADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVE 513
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 514 KVPASSWVE 522
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 11/232 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+++ Y + G + A F+ M + VSWT++I ++ G EAI V ++ + V
Sbjct: 116 LLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASG--V 173
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T V VL++CA + + L G++V + I +VF+ TA +DLY K G +++
Sbjct: 174 RPDSFTAVRVLTACARVAD---LVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDK 230
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M KDV W AM+ ASN +EAL +F M+ +G+R + T L+AC R
Sbjct: 231 ARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTR 290
Query: 180 AQLVELGLELFHSMLGKFEVV--PIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++LG + ML EV+ P++ ++D+ + G EA + M
Sbjct: 291 LGALDLGRRVV-GMLQWDEVLGNPVLG--TALIDMYAKCGSTGEAWMVFQKM 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M RD++ W ++I G G A + M + +
Sbjct: 319 LIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTL- 377
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GLV +G Y Y +R I M +DL + G L+
Sbjct: 378 -NDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPRIEHYGIM----VDLLSRAGLLQ 432
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
A ++ + M ++ + W A++
Sbjct: 433 EAHQLIQDMPMEANAVVWGALL 454
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G++ A +F M +D VSW+++I GF NG F +A F+ + +R
Sbjct: 209 MLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREV--RREGMR 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + VLS+CA G G+ +HG++ ++ + + + ALID Y K G L+ A
Sbjct: 267 PNEVSLTGVLSACA---QAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMA 323
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M+ + +W AMI+ +A + +EA+ +F+EM+E ++ + ITF+++L AC+ A
Sbjct: 324 RLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHA 383
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+LG F M+ + + P++EHYGC+VDL GRAG L +A +F+ MP P+ V
Sbjct: 384 GLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRT 443
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG + L +V R+L EL P++ G +V+LSNI+A +W LR++M +
Sbjct: 444 LLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRL 503
Query: 301 RKIPAYSLIE 310
+K P +S+IE
Sbjct: 504 KKTPGWSMIE 513
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL---SSC 73
LF ++ DV + ++I G + A+ +F M ++ P+ ++ +L ++C
Sbjct: 61 LFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRK-SVALPDSFSFAFLLKAAANC 119
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L N GL L GY L + + F+GT LI +Y + CL A +VF M+ ++
Sbjct: 120 RALTN--GLQLHCLAVGYGLDSHL----FVGTTLISMYAECACLVFARKVFDEMIEPNIV 173
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
WNA++++ K+A +F M + L + I +L +A ++L E+F M
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNI----MLAGYTKAGELQLAREVFMKM 229
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGA 250
K +V + ++ G ++A F R + E P+ L +L AC GA
Sbjct: 230 PLKDDV-----SWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGA 284
Query: 251 VDL 253
+
Sbjct: 285 FEF 287
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 196/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A +F+ ++ +D+V+W ++I G+ +NG EAI +F +M + +RP++
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM--RIAGMRPDKI 356
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VLS+C+ + G L LG ++ GY R + +V++GTAL+D+Y K G L++AI VF
Sbjct: 357 TLAGVLSACSAV---GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ M K+V +WNA+I LA N R EA+ F M+ E+GL+ ++ITF+ VL+AC A LV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VDLL R+G L EA +F+ +P + DA +LGALL
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A +R + + +R M E G+ K
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593
Query: 304 PAYSLIE 310
P S +E
Sbjct: 594 PGCSWVE 600
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D +A +F+ + RDVVSW +++ + R G GE +F++M+ V
Sbjct: 193 LITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKE-GTVA 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VL++C ++G L LG+ V + + + +G+AL+ +Y K G + A
Sbjct: 252 PNVVTVAVVLAACR---DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +++ KD+ WNAMI+ A N EA+ +F M+ G+R ++IT VL+AC+
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG EL + S G + V + +VD+ + G L +A E R MP + AS
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGT---ALVDMYAKCGDLDKAIEVFRKMPCKNVAS-W 424
Query: 239 GALLGACKIHGAVD--LCH-EVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
AL+ +G D + H ++ R L+P VLS +HAGL +RW
Sbjct: 425 NALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 47/236 (19%)
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+LI +Y + A +VF + +DV +WNAM+ + E MF +M ++G A
Sbjct: 192 SLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVA 251
Query: 166 NEITFVAVLTACARAQ----------------LVELGLELFHSMLGKF----EVVPIMEH 205
+ VAV+ A R Q +E+ + ++LG + E+
Sbjct: 252 PNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRV 311
Query: 206 YGCVVD---------LLGRA--GLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAV 251
+ ++D + G A G+ +EA SM PD L +L AC GA+
Sbjct: 312 FDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGAL 371
Query: 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWNRATDLRKAMVEAGIRKIP 304
+L E+ + R + SN++ G ++ + + DL KA +E RK+P
Sbjct: 372 ELGSELD--------GYASRRGLYSNVYVGTALVDMYAKCGDLDKA-IEV-FRKMP 417
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + + +A L+F NM++++VVSW ++I G+ +NG EA+ +F ++ +
Sbjct: 325 MVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIW 382
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P T+ ++L++CA L + L LG+Q H IL++ +F+G +LID+Y K
Sbjct: 383 PTHYTFGNLLNACANLAD---LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKC 439
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G +E VF+ MV +DV +WNAMI A N AL +F +M G + + +T + VL
Sbjct: 440 GMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVL 499
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC+ A LVE G FHSM + + P+ +H+ C+VDLLGRAG L EA + +++MP +PD
Sbjct: 500 SACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPD 559
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
V G+LL ACK+HG ++L V +L+E+ P + G YV+LSN++A L RW +RK
Sbjct: 560 NVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S IE
Sbjct: 620 MRQRGVIKQPGCSWIE 635
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 5/226 (2%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
K G +D A +F++M + D SW ++++GF ++ F EA+ F +M ++ NE +
Sbjct: 96 TKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVL--NEYS 153
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ S LS+CAGL + L +G Q+H I ++ +L V+MG+AL+D+Y K G + A R F
Sbjct: 154 FGSALSACAGLTD---LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFD 210
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++++ +WN++I+ N +AL +F M + G+ +EIT +V++ACA +
Sbjct: 211 GMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIRE 270
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
GL++ ++ + + + +VD+ + ++EA+ MP
Sbjct: 271 GLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 45/230 (19%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A F+ M R++VSW S+I + +NG G+A+ VF MM N V
Sbjct: 192 LVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG--VE 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-----RNEIVLSVFMGTALIDLYGK-- 113
P+E T SV+S+CA + G Q+H ++ RN++VL G AL+D+Y K
Sbjct: 250 PDEITLASVVSACASW---SAIREGLQIHARVVKRDKYRNDLVL----GNALVDMYAKCR 302
Query: 114 -----------------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
++ A +F +M+ K+V +WNA+I+
Sbjct: 303 RVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQ 362
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
N +EA+ +F +K + + TF +L ACA ++LG + +L
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQIL 412
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 35/199 (17%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE--- 118
+ + + +L SC + ++ G+ +++H I++ + +F+ L+D YGK G E
Sbjct: 18 DSSPFAKLLDSC--VRSKSGID-ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDAR 74
Query: 119 ----------------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
A VFKSM D C+WNAM+S A + R +E
Sbjct: 75 KVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEE 134
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
AL F +M + NE +F + L+ACA + +G+++ H+++ K + + +V
Sbjct: 135 ALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQI-HALISKSRYLLDVYMGSALV 193
Query: 211 DLLGRAGLLSEAKEFMRSM 229
D+ + G+++ A+ M
Sbjct: 194 DMYSKCGVVACAQRAFDGM 212
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +D A +F+ M RDVVSWT++++ + G GE +F MM + L
Sbjct: 203 LADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGIL-- 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE TY VL +CA +E LGKQVHG + ++ S F G+AL+ +Y K G + A
Sbjct: 261 PNEFTYAGVLRACAEFTSEK---LGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M D+ +W AMIS A N + EAL FD + G R + +TFV VL+ACA A
Sbjct: 318 MRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHA 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +FHS+ K+ + +HY CV+DLL R+GL A++ + +MP +P+ + +
Sbjct: 378 GLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWAS 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IH V L L E++P++ YV L+NI+A + ++ ++R+ M GI
Sbjct: 438 LLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGI 497
Query: 301 RKIPAYSLIE 310
K+PA S IE
Sbjct: 498 TKMPASSWIE 507
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 7/273 (2%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA LF+ M +RD SW++I++ VR+G A+ +++ M+ + + S+
Sbjct: 111 SARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNE--FTASSA 168
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
A G+++H +++R I + +AL D+Y K G L+ A VF M ++DV
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
+W AM+ R+ E +F M G+ NE T+ VL ACA +LG ++ H
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQV-HG 287
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ K +V + + G + A R MP +PD A++ +G D
Sbjct: 288 RMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMP-KPDLVSWTAMISGYAQNGQPD 346
Query: 253 LCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGL 282
LL +P H VLS HAGL
Sbjct: 347 EALHCFDMLLSSGFRPDHVTFVGVLSACAHAGL 379
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 194/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +D A +F+ M +RD++SWT++INGFV+ G EA+ F+ M V+ V+
Sbjct: 135 MIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREM--QVSGVK 192
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+V+++ A N G L G VH +++ + +V + +LIDLY + GC+E A
Sbjct: 193 PD---YVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFA 249
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN++I A+N E+LV F M+E+ + + +TF LTAC+
Sbjct: 250 RQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHV 309
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F +M + + P +EHYGC+VDL RAG L EA + + SMP +P+ V+G+
Sbjct: 310 GLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGS 369
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG +L + +RL EL+ K YV+LSN++A +W A+ +R+ M G
Sbjct: 370 LLAACRTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLG 429
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 430 LKKQPGFSSIE 440
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VSWTS I RNG EA F M + V PN T +++LS CA G
Sbjct: 29 TVSWTSRITLLSRNGRLAEAAKEFTAM--RLAGVEPNHITLIALLSGCADCEP-----FG 81
Query: 86 KQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+HGY + RN++++ GTA++ +Y K +A VF + K+ TWN MI
Sbjct: 82 DSLHGYACKLGLDRNQVMV----GTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMID 137
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+ R +A +FDEM E+ L I++ A++ + L E L F M
Sbjct: 138 GYMRSGRVDDAAKVFDEMPERDL----ISWTAMINGFVKKGLHEEALAWFREM 186
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G M A +F+ M RD +SW++++ G+V+ A+ VF+NM+ VR
Sbjct: 219 VLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQG--VR 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+A V+ LS+ A L G L GK VH + R+ + + + +G AL+D+Y K GC+ A
Sbjct: 277 PNQAAVVTALSAAARL---GLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV WNAMI LA++ ++A+ +F+ +GL +TFV VL C+R+
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F ++ K+ + P MEHYGC+VDLLGRAGL+ EA E + M PD + G
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +CK HG VDL VG +L+EL P H G YV+LS I+A +W+ ++RK M G
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 514 NKSAGWSLMEA 524
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGL------YLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111
R N ++ +L+S + +N G +LG VH ++ +F+ AL+ Y
Sbjct: 134 RRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGV 193
Query: 112 -GKVGCLER-----------------------------AIRVFKSMVIKDVCTWNAMISS 141
G VG + R A VF M ++D +W+ ++
Sbjct: 194 SGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGG 253
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ AL +F M E+G+R N+ V L+A AR L+E G + H+++ + +
Sbjct: 254 YVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPV 312
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
M +VD+ + G ++ A+E M
Sbjct: 313 CMNVGAALVDMYAKCGCVAVAREVFDGM 340
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 194/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK G +D A LF+ + +++ V W S+I G+ + G E I + + M +++ ++
Sbjct: 249 LINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM--HLSNLK 306
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VLS+CA + G LG VH + + I VF+GTALID+Y K G + A
Sbjct: 307 PDRFTVSGVLSACAQM---GAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++V TWNA++S AS+ + + A+ +F EM+E G R + ITF+AVL ACA +
Sbjct: 363 RKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F ML +++ P +EHYGC+VDLLGRAGLL EA+E ++ M EP+ V GA
Sbjct: 423 GLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGA 482
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC IHG +++ +++L G YV+L+N++A +R+NR +R+ MVE GI
Sbjct: 483 LLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGI 542
Query: 301 RKIPAYSLIE 310
K S+IE
Sbjct: 543 CKSHGCSMIE 552
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 12/266 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y+ G++ +A +F+ +DVV W ++I G+ R G ++ VFK M+ V VR
Sbjct: 146 LLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMV-EVKEVR 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
PNE T + ++ +C + L LG+ +HGY++++ ++ V + ALI+LY K G L+
Sbjct: 205 PNEGTMMGLIVAC---IESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDG 261
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + K+ WN++I E + + EM L+ + T VL+ACA+
Sbjct: 262 ARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQ 321
Query: 180 AQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LG + F G ++V ++D+ + G + A++ M E + +
Sbjct: 322 MGAFNLGNWVHRFAEKKGIWDVFIGT----ALIDMYAKCGFIGAARKVFDQMN-ERNVAT 376
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
A+L HG + E+ + E
Sbjct: 377 WNAILSGYASHGQAESAIELFSEMRE 402
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ ++ + +D A +F + D + ++I + + AI ++ M N++
Sbjct: 44 IINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNIL- 102
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ TY V +CA ++ + GK+VHG I+R L F+ ++L++ Y G + A
Sbjct: 103 GDKYTYPFVFKACA---SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNA 159
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+VF KDV WNA+I+ A ++ +F EM E K +R NE T + ++ AC
Sbjct: 160 QQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIE 219
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ ++LG + M+ + ++ +++L + G L A++ +P E + V
Sbjct: 220 SKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIP-EKNTVVWN 278
Query: 240 ALL-GACKI 247
+L+ G C+I
Sbjct: 279 SLICGYCQI 287
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H + + + + F+ T +I+ + CL+ A +VF D +NAMI + +S+
Sbjct: 23 KQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSS 82
Query: 146 SREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLVELGLEL 189
A+ ++++M+ + + ++ T+ V ACA VE G E+
Sbjct: 83 QTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEV 127
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y D ++ +F+N+ RD + W S++ G +NG EA+ +F+ M+ + ++
Sbjct: 214 LIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSG--IK 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S++ +C L + L LGKQ+H Y++R +VF+ ++LID+Y K G + A
Sbjct: 272 PMPVTFSSLIPACGNLAS---LLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + D+ +W AMI A + +EALV+FD M+ L+ N ITF+AVLTAC+ A
Sbjct: 329 RRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHA 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+SM + +VP +EH+ + D LGR G L EA F+ M +P ASV
Sbjct: 389 GLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWST 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H L EV +++ +L+P+ G +++LSN ++ RWN A LRK+M + G+
Sbjct: 449 LLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGM 508
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 509 QKEPACSWIE 518
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 138/277 (49%), Gaps = 14/277 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++S +F+ M ++DVVSW +++ G +G GEA+ + + M + +P+ T SVL
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDG--CKPDSFTLSSVL 180
Query: 71 SSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+ EG + G ++HG+ RN VF+G++LID+Y + +++VF ++ +
Sbjct: 181 P----IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPV 236
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D WN+M++ A N EAL +F M G++ +TF +++ AC + LG +L
Sbjct: 237 RDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQL 296
Query: 190 F-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ + G F+ + ++D+ + G +S A+ + PD A++ +H
Sbjct: 297 HAYVIRGGFDGNVFIS--SSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMIMGHALH 353
Query: 249 GAVDLCHEVGRR--LLELQPKHCGRYVVLSNI-HAGL 282
G + R L L+P H VL+ HAGL
Sbjct: 354 GPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGL 390
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 103/254 (40%), Gaps = 25/254 (9%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE--ATYVSVLSSCAGLVNEGGLYLG 85
SW I G F AI +F M + + + L SCA L G LG
Sbjct: 21 SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAAL---GLRALG 77
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGC--------------LERAIRVFKSMVIKD 131
+H LR+ F AL++LY K+ LE +VF M KD
Sbjct: 78 ASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKD 137
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-- 189
V +WN ++ A + R EAL + EM G + + T +VL A V G+EL
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
F + G + V + ++D+ + + ++P DA + ++L C +G
Sbjct: 198 FATRNGFHDDVFVGS---SLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNG 253
Query: 250 AVDLCHEVGRRLLE 263
+VD + RR+L
Sbjct: 254 SVDEALGLFRRMLH 267
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 193/315 (61%), Gaps = 9/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNV 56
++D Y K GD +A+ F M+ +++V+W ++I+ R G EA+ +F+ M+ G
Sbjct: 205 LVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCT 264
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVG 115
+ P++AT+V+VL +CA L G L G+ VH YI+R + +G ALID+Y K G
Sbjct: 265 SSPLPDDATFVAVLGACARL---GALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCG 321
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+E+A VF +M +DV T+ +MIS LA + R +EAL +F +M++ +R NE+TF+ VL+
Sbjct: 322 AVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVLS 381
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC A +E GL F +M V P +EHYGCVVD+LGRAG L EA+E + MP PDA
Sbjct: 382 ACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVMPIRPDA 441
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G+LL AC+ HG VD V RR+ E + G YV++SN++A R +A +R+ M
Sbjct: 442 IIWGSLLAACRAHGHVDRAERVMRRMAEDE-DDAGDYVLMSNMYAQEGRHGKAVQVRRQM 500
Query: 296 VEAGIRKIPAYSLIE 310
+ K+P SLIE
Sbjct: 501 RRGKVDKVPGCSLIE 515
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
DVVSWT+++ R G F EA +F M + +V V+ ++ A G L L
Sbjct: 127 DVVSWTAMVTWHARLGLFREAAELFLAMADDGAVV----VDAVAAAAAFAACAGAGELVL 182
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLA 143
++VH +L + L V AL+D+Y K G A+R F++MV K++ TWN MIS+ A
Sbjct: 183 AREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHA 242
Query: 144 SNSREKEALVMFDEM-KEKGLRA----NEITFVAVLTACARAQLVELG--LELFHSMLGK 196
+EAL +F EM +++G + ++ TFVAVL ACAR ++ G + + G+
Sbjct: 243 RAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGR 302
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++ + ++D+ + G + +A E +M D +++ +HG
Sbjct: 303 DAAAGVVGN--ALIDMYAKCGAVEQAAEVFDAMTRR-DVYTYTSMISGLAMHG 352
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 196/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A +F+ ++ +D+V+W ++I G+ +NG EAI +F +M + +RP++
Sbjct: 299 YEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSM--RIAGMRPDKI 356
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VLS+C+ + G L LG ++ GY R + +V++GTAL+D+Y K G L++AI VF
Sbjct: 357 TLAGVLSACSAV---GALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ M K+V +WNA+I LA N R EA+ F M+ E+GL+ ++ITF+ VL+AC A LV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VDLL R+G L EA +F+ +P + DA +LGALL
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A +R + + +R M E G+ K
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593
Query: 304 PAYSLIE 310
P S +E
Sbjct: 594 PGCSWVE 600
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D +A +F+ + RDVVSW +++ + R G GE +F++M+ V
Sbjct: 193 LITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKE-GTVA 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VL++C ++G L LG+ V + + + +G+AL+ +Y K G + A
Sbjct: 252 PNVVTVAVVLAACR---DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +++ KD+ WNAMI+ A N EA+ +F M+ G+R ++IT VL+AC+
Sbjct: 309 RRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAV 368
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG EL + S G + V + +VD+ + G L +A E R MP + AS
Sbjct: 369 GALELGSELDGYASRRGLYSNVYVGT---ALVDMYAKCGDLDKAIEVFRKMPCKNVAS-W 424
Query: 239 GALLGACKIHGAVD--LCH-EVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
AL+ +G D + H ++ R L+P VLS +HAGL +RW
Sbjct: 425 NALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRW 479
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G++ SA +F+ + +D++SW+S+I + + F +++ +F+ M V+
Sbjct: 1113 MITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAK--VK 1170
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L LGK +H Y+ RN I M +LID++ K GC++ A
Sbjct: 1171 PDAVVIASVLSACAHL---GALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEA 1227
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M KD +WN++I LA+N E EAL +F M +G R NE+TF+ VL ACA
Sbjct: 1228 LQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANR 1287
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
QLVE GL+ F M + P M+HYGCVVD+L RAG L +A F+ MP PD V
Sbjct: 1288 QLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRI 1347
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG V + ++L EL P + ++LSNI+A +RW+ A ++R+ + +
Sbjct: 1348 LLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAV 1407
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 187/304 (61%), Gaps = 6/304 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ G+++ A LLF+ M R+VVSWT +I+G+ R + EA+ + ++MM +
Sbjct: 551 MITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGG--IS 608
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T ++V+ + + L GG+ +G+ ++GY + I+ +G +LIDLY K+G ++ +
Sbjct: 609 PSEITVLAVIPAISNL---GGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNS 665
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++VF M+ + ++ +W ++IS A + EAL +F EM+ G++ N ITF++V+ AC+
Sbjct: 666 LKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSH 725
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE GL F SM+ ++ + P ++H+GC++D+LGRAG L EA++ + +P E + +V
Sbjct: 726 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWR 785
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLG C +G V + + + +L+ + G + VLSN+ L R++ A RK + +
Sbjct: 786 ILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRK 845
Query: 300 IRKI 303
I K+
Sbjct: 846 IVKL 849
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 45/259 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + A +F ML +DVVSW S+I G+ ++ E + +FK M V+ ++
Sbjct: 985 YAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEE--VQADKV 1042
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V V+S+C L G + + YI N I + V++G LID Y ++G L+ A +VF
Sbjct: 1043 TMVKVISACTHL---GDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVF 1099
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ T NAMI++ A A +FD++ K L I++ +++ A ++A
Sbjct: 1100 SQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDL----ISWSSMICAYSQASHFS 1155
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LELF M RA + +PDA V+ ++L A
Sbjct: 1156 DSLELFRQM--------------------QRAKV-------------KPDAVVIASVLSA 1182
Query: 245 CKIHGAVDL---CHEVGRR 260
C GA+DL H+ RR
Sbjct: 1183 CAHLGALDLGKWIHDYVRR 1201
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
+ D+ SA +F+ + W +++ G ++ +AI +K ++P+ T
Sbjct: 885 LHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKK--AQEKGMKPDNLT 942
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ VL +CA G+Q+H ++++ +L +F+ +LI LY G L A VF
Sbjct: 943 FPFVLKACAKTCAPKE---GEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFN 999
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
M++KDV +WN++I + ++R KE L +F M+ + ++A+++T V V++AC
Sbjct: 1000 EMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACT 1052
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
+ + W + + + EA+ +FK+ ++ + + VL +CAGL G
Sbjct: 440 VFDQSPAPWRAFLKAYSHGPFPLEALHLFKHARQHL---ADDTFVFTFVLKACAGL---G 493
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
G Q+H +++ ++ TALI++Y CL A +VF M +K+V +WN MI+
Sbjct: 494 WHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMIT 553
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
A + A ++FD+M + N +++ ++ RA L L L M+
Sbjct: 554 GFAGWGEVEYARLLFDQMPCR----NVVSWTGLIDGYTRACLYAEALTLLRHMMA 604
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYG-KVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
K++H +++ + + + + +I LY L A +VFK + WN ++ LA
Sbjct: 858 KKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQ 917
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ K+A+V + + +EKG++ + +TF VL ACA+
Sbjct: 918 SDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKT 953
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G M A +F+ M RD +SW++++ G+V+ A+ VF+NM+ VR
Sbjct: 219 VLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQG--VR 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+A V+ LS+ A L G L GK VH + R+ + + + +G AL+D+Y K GC+ A
Sbjct: 277 PNQAAVVTALSAAARL---GLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV WNAMI LA++ ++A+ +F+ +GL +TFV VL C+R+
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F ++ K+ + P MEHYGC+VDLLGRAGL+ EA E + M PD + G
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +CK HG VDL VG +L+EL P H G YV+LS I+A +W+ ++RK M G
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 514 NKSAGWSLMEA 524
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGL------YLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111
R N ++ +L+S + +N G +LG VH ++ +F+ AL+ Y
Sbjct: 134 RRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGV 193
Query: 112 -GKVGCLER-----------------------------AIRVFKSMVIKDVCTWNAMISS 141
G VG + R A VF M ++D +W+ ++
Sbjct: 194 SGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGG 253
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ AL +F M E+G+R N+ V L+A AR L+E G + H+++ + +
Sbjct: 254 YVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPV 312
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
M +VD+ + G ++ A+E M
Sbjct: 313 CMNVGAALVDMYAKCGCVAVAREVFDGM 340
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 183/310 (59%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K GD+D +F+ M+ RD+V W SII GF ++G AI +F M
Sbjct: 220 LIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAG--FS 277
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T SVL +C G+V L G+QVH ++L+ E + + AL+D+Y K G LE A
Sbjct: 278 ANQGTLTSVLRACTGMVM---LEAGRQVHAHVLKYE--RDLILHNALLDMYCKCGSLEDA 332
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +W+ MIS LA N + EAL +FD MK +G+ N IT V VL AC+ A
Sbjct: 333 EALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHA 392
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM F + P EH+ C+VDLLGRAG L EA EF+R M EPDA +
Sbjct: 393 GLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRT 452
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H + +L R +L+L+P G V+LSN +A L +W A KAM + G+
Sbjct: 453 LLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGM 512
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 513 KKEPGRSWIE 522
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G +D A+ LF+ M +R+VV+WT+++ E F M + V
Sbjct: 121 LVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWR-DGVA 179
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ SVL +C G + +H ++ + VF+ ++LID Y K+G L+
Sbjct: 180 PNAYTFSSVLGAC------GTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGG 233
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV +D+ WN++I+ A + A+ +F MK+ G AN+ T +VL AC
Sbjct: 234 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGM 293
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++E G ++ H+ + K+E I+ + ++D+ + G L +A+ MP
Sbjct: 294 VMLEAGRQV-HAHVLKYERDLIL--HNALLDMYCKCGSLEDAEALFHRMP 340
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA-SNSREKEALVMFDEMK 159
+F+ +L+ +Y K G L+ A+R+F M ++V TW ++++LA ++ R++EAL M
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174
Query: 160 EKGLRANEITFVAVLTACA--------RAQLVELGLE 188
G+ N TF +VL AC A V++GL+
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLD 211
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 184/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY +A L+F M +R+VVSW ++I G+ +NG EA+ +F + V
Sbjct: 326 MVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESVC 383
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P T+ ++L +CA L + L+LG Q H ++L++ +F+G +LID+Y K
Sbjct: 384 PTHYTFANILKACADLAD---LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKC 440
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
GC+E VF+ M+ +D +WNAMI A N EAL +F EM + G + + IT + VL
Sbjct: 441 GCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVL 500
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC A VE G F SM F V P+ +HY C+VDLLGRAG L EAK + MP +PD
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPD 560
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + G+LL ACK+H + L V +L E++ + G YV+LSN++A L +W A ++RK
Sbjct: 561 SVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKL 620
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S I+
Sbjct: 621 MRKEGVTKQPGCSWIK 636
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G K G +D A LF +M +RD +W S+++GF ++ EA+ F MM V
Sbjct: 92 VVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA-MMHKEGFVL 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T+ S LS+C+GL + G Q+H I ++ + V++G+AL+D+Y K G + A
Sbjct: 151 -NEYTFASGLSACSGL---NDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDA 206
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++V +WN++I+ N EAL +F M E + +E+T +V++ACA
Sbjct: 207 QQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASL 266
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+++G E+ ++ ++ + VD+ + + EA+ SMP
Sbjct: 267 SAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 150/326 (46%), Gaps = 54/326 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+++ A +F+ M R+VVSW S+I + +NG EA+ VF+ M+ + V
Sbjct: 193 LVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLES--WVE 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGKVG 115
P+E T SV+S+CA L + +G++VH + LRN+I+LS A +D+Y K
Sbjct: 251 PDEVTLASVISACASL---SAIKVGQEVHARVVKMDKLRNDIILS----NAFVDMYAKCS 303
Query: 116 CLERAIRVFKSMVIKDV-------------------------------CTWNAMISSLAS 144
++ A +F SM I++V +WNA+I+
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIM 203
N +EAL +F +K + + TF +L ACA + LG++ H + F+
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGE 423
Query: 204 EHY----GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
E ++D+ + G + E R M E D A++ +G + E+ R
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 260 RLLEL--QPKHCGRYVVLSNI-HAGL 282
+L+ +P H VLS HAG
Sbjct: 483 EMLDSGEKPDHITMIGVLSACGHAGF 508
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 39/220 (17%)
Query: 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G L G+Q+ + + +VF +++ K+G L+ A +F+SM +D CTWN+M+
Sbjct: 69 GSLEDGRQLFDKMPQR----NVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
S A + R +EAL F M ++G NE TF + L+AC+ + G+++ HS++ K
Sbjct: 125 SGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQI-HSLIAKSPC 183
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-------------------P---------- 230
+ + +VD+ + G +++A++ M P
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQV 243
Query: 231 -----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
EPD L +++ AC A+ + EV R++++
Sbjct: 244 MLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMD 283
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y D ++ +F+N+ RD + W S++ G +NG EA+ +F+ M+ VR
Sbjct: 212 LIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTG--VR 269
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S++ C L + L GKQ+H Y++R +VF+ ++LID+Y K G + A
Sbjct: 270 PVPVTFSSLIPVCGNLAS---LRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIA 326
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M DV +W AMI A + +EALV+F+ M+ + N ITF+AVLTAC+ A
Sbjct: 327 HHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHA 386
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F SM + +VP +EH + D+LGRAG L EA F+ M +P ASV
Sbjct: 387 GLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWST 446
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H L EV ++++EL+P+ G +VVLSN+++ RWN A LRK+M + G+
Sbjct: 447 LLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGM 506
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 507 KKDPACSWIE 516
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 18/288 (6%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+ G + ++S +F+ M++RDVVSW +++ G G EA+ + + M RP
Sbjct: 112 VGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREG--FRP 169
Query: 62 NEATYVSVL---SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ T SVL + CA + G +VHG+ +RN VF+G++LID+Y +
Sbjct: 170 DSFTLSSVLPIFAECADVKR------GSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTD 223
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+++VF ++ ++D WN++++ A N +EAL +F M + G+R +TF +++ C
Sbjct: 224 YSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCG 283
Query: 179 RAQLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G +L + + G FE + ++D+ + G +S A M PD
Sbjct: 284 NLASLRFGKQLHAYVIRGGFEDNVFIS--SSLIDMYCKCGEISIAHHIFDRM-CSPDVVS 340
Query: 238 LGALLGACKIHGAVDLCHEVGRR--LLELQPKHCGRYVVLSNI-HAGL 282
A++ +HG + R L +P H VL+ HAGL
Sbjct: 341 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGL 388
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 24/256 (9%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+SW I G F +AI +F M A+ + L SCA L G LG
Sbjct: 15 LSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAAL---GLSALGA 71
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGC-------------------LERAIRVFKSM 127
+H +R+ F AL++LY K+ C LE +VF M
Sbjct: 72 SLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEM 131
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ +DV +WN ++ A R EALV+ +M +G R + T +VL A V+ G
Sbjct: 132 IERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGS 191
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
E+ H + + ++D+ + + ++P D + ++L C
Sbjct: 192 EV-HGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DPILWNSVLAGCAQ 249
Query: 248 HGAVDLCHEVGRRLLE 263
+G+V+ + RR+L+
Sbjct: 250 NGSVEEALGIFRRMLQ 265
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K+G +D A F M +D V W +I F +NG AI +F+ M + + +
Sbjct: 525 YAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQM--GTSGTKFDSV 582
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ + LS+CA N LY GK++H +++RN + F+ + LID+Y K G L A VF
Sbjct: 583 SLSATLSACA---NYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVF 639
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ +WN++I++ ++ R +E L +F EM E G++ + +TF+ +++AC A LV+
Sbjct: 640 DMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVD 699
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G+ F M ++ + MEH+ C+VDL GRAG L EA + ++SMPF PDA G+LLGA
Sbjct: 700 EGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGA 759
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG V+L + L+EL P + G YV+LSN+HAG W +R M E G++KIP
Sbjct: 760 CRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIP 819
Query: 305 AYSLIE 310
YS I+
Sbjct: 820 GYSWID 825
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 140/262 (53%), Gaps = 11/262 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ A +F+ M + D V+W +I G+V+NG EA+ +FK M+ + V+
Sbjct: 319 IITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMV--TSGVK 376
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ S L S ++ G L K+VH YI+R+ + V++ +AL+D+Y K G +E A
Sbjct: 377 LDSITFASFLPS---VLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMA 433
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ + DV AMIS N EAL +F + ++G+ N +T +VL ACA
Sbjct: 434 CKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAAL 493
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG EL +L K + + + + + ++G L A +F R MP + D+
Sbjct: 494 ASLKLGKELHCDILKK-GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNL 551
Query: 241 LLGACKIHG----AVDLCHEVG 258
++ + +G A+DL ++G
Sbjct: 552 MIVSFSQNGKPELAIDLFRQMG 573
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 147/285 (51%), Gaps = 10/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD++ A F+ DV T++I+G+V NG EA+ +F+ ++ +
Sbjct: 420 LVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMV-- 477
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVL +CA L + L LGK++H IL+ + +G+++ +Y K G L+ A
Sbjct: 478 PNCLTMASVLPACAALAS---LKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLA 534
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ M +KD WN MI S + N + + A+ +F +M G + + ++ A L+ACA
Sbjct: 535 YQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANY 594
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G EL H + + + ++D+ + G L+ A+ M ++ + S +
Sbjct: 595 PALYYGKEL-HCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVS-WNS 652
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ A HG C ++ ++E +QP H V++S HAGL
Sbjct: 653 IIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGL 697
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y NG + A LF+ + RD + W ++NG+V+NG F A+ F+ M + V+
Sbjct: 218 LIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSC--VK 275
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++V +LS CA G + G Q+HG ++R+ + +I +Y K G L A
Sbjct: 276 PNSVSFVCLLSVCA---TRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDA 332
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M D TWN +I+ N EA+ +F M G++ + ITF + L + ++
Sbjct: 333 RKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKS 392
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+ W +I GF GCF A+ F M+G+ V P++ T+ V+ +C GL N + L K
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSN--VAPDKYTFPYVIKACGGLNN---VPLCK 197
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
VH + +F+G++LI LY G + A +F + ++D WN M++ N
Sbjct: 198 MVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNG 257
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIME 204
AL F EM+ ++ N ++FV +L+ CA +V G++L H ++ + FE P +
Sbjct: 258 DFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQL-HGLVIRSGFESDPTVA 316
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ ++ + + G L +A++ MP + D L+ +G D
Sbjct: 317 N--TIITMYSKCGNLFDARKIFDIMP-QTDTVTWNGLIAGYVQNGFTD 361
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 192/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +++A+ LF+ M +RD++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 140 MIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREM--QISGVK 197
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++++ A + G L G VH Y++ + ++ + +LIDLY + GC+E A
Sbjct: 198 PD---YVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFA 254
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I A+N E+LV F +M+E+G + + +TF LTAC+
Sbjct: 255 REVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHV 314
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F +M + P +EHYGC+VDL RAG L +A ++SMP +P+ V+G+
Sbjct: 315 GLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGS 374
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + L +L K YV+LSN++A W A+ +R+ M G
Sbjct: 375 LLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLG 434
Query: 300 IRKIPAYSLIE 310
++K P +S +E
Sbjct: 435 LKKQPGFSSVE 445
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
Query: 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
IL VSWTS I RNG EA F +M + V PN T++++LS C
Sbjct: 19 ILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSM--RLAGVEPNHITFIALLSGC- 75
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
G V+ G LG +HGY + + + V +GTA++ +Y K G +A VF M K+
Sbjct: 76 GDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSV 135
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
TWN MI + + A+ +FDEM E+ L I++ A++ + E L F M
Sbjct: 136 TWNTMIDGYMRSGQVNNAVKLFDEMPERDL----ISWTAMINGFVKKGFHEEALAWFREM 191
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MID Y+++G +D A+ LF+ M D++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 92 MIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREM--QISGVK 149
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ YV+++++ A N G L G VH Y+L + +V + +LIDLY + GC+E A
Sbjct: 150 PD---YVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFA 206
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I A+N E+LV F +M+E+G + +TF LTAC+
Sbjct: 207 REVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACSHV 266
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G++ F +M +++ P +EHYGC+VDL RAG L +A + ++SM +P+ V+G+
Sbjct: 267 GLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGS 326
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG +L + + L E+ K YV+LSN++A +W A +R+ M G
Sbjct: 327 LLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGAXKMRRKMKGLG 386
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 387 LKKQPGFSSIE 397
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
PN T+++++S C G G LG +HGY + + + V +GTA++ +Y K +
Sbjct: 15 PNHITFIALISGC-GDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRFGK 73
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M K+ TWN MI + + + A+ +FDEM + L I++ A++ +
Sbjct: 74 ARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDL----ISWTAMINGFVK 129
Query: 180 AQLVELGLELFHSM 193
E L F M
Sbjct: 130 KGFHEEALVWFREM 143
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M+ A +F+ M+++D+V W+++I G+ NG EAI +F M VN VR
Sbjct: 246 LVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR-KVN-VR 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V LSSCA L G L LG G + E + + +GT+LID Y K G +E A
Sbjct: 304 PDCYAMVGALSSCASL---GALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ V+K M KD +NA+IS LA + A +F +M + G+ NE TFV +L C A
Sbjct: 361 LGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHA 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM F V P +EHYGC+VDLL RAG L EA ++ MP + + V G+
Sbjct: 421 GLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGS 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C++H L V ++L+EL+P + G YV+LSNI++ RW+ A +R + E G+
Sbjct: 481 LLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGM 540
Query: 301 RKIPAYSLIE 310
+K+P YS +E
Sbjct: 541 QKLPGYSWVE 550
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 131/248 (52%), Gaps = 9/248 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F++M+ ++VVSWT +I G + G F EA+ +F+ ++ + +RP+
Sbjct: 149 YSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESG--LRPDGF 206
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V VL +CA L G L G+ + + + +VF+ T+L+D+Y K G +E A VF
Sbjct: 207 VIVRVLRACARL---GDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVF 263
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV KD+ W+AMI ASN +EA+ +F EM++ +R + V L++CA +E
Sbjct: 264 DGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALE 323
Query: 185 LGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
LG M +F P++ ++D + G + EA + M E D V A++
Sbjct: 324 LGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALGVYKMMK-EKDRVVFNAVIS 380
Query: 244 ACKIHGAV 251
++G V
Sbjct: 381 GLAMYGQV 388
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ ++I G V F A+ ++ +M + + P+ T+ VL +CA L +LG +
Sbjct: 72 YNTMIRGMVSKDRFNNAVHLYASM--HKAAIVPDSFTFSFVLKACARL---NLFHLGVMI 126
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H + + VF+ T ++ Y K G L A +VF MV+K+V +W MI +
Sbjct: 127 HSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKF 186
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+EA+ +F + E GLR + V VL ACAR +E G
Sbjct: 187 REAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG 224
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 118 ERAIRVF-KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ I VF K+ + +N MI + S R A+ ++ M + + + TF VL A
Sbjct: 54 QYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKA 113
Query: 177 CARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
CAR L LG+ + HS++ K F+ ++ VV + G L +A + M +
Sbjct: 114 CARLNLFHLGV-MIHSLVFKTGFDCDVFVKTN--VVCFYSKCGFLRDAWKVFDDMVVKNV 170
Query: 235 ASVLGALLGAC---KIHGAVDL 253
S G + G K AVDL
Sbjct: 171 VSWTGMICGCIEFGKFREAVDL 192
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G M A +F+ M RD +SW++++ G+V+ A+ VF+NM+ VR
Sbjct: 219 VLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQG--VR 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+A V+ LS+ A L G L GK VH + R+ + + + +G AL+D+Y K GC+ A
Sbjct: 277 PNQAAVVTALSAAARL---GLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVA 333
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV WNAMI LA++ ++A+ +F+ +GL +TFV VL C+R+
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRS 393
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F ++ K+ + P MEHYGC+VDLLGRAGL+ EA E + M PD + G
Sbjct: 394 GLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGT 453
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +CK HG VDL VG +L+EL P H G YV+LS I+A +W+ ++RK M G
Sbjct: 454 ILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGT 513
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 514 NKSAGWSLMEA 524
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGL------YLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111
R N ++ +L+S + +N G +LG VH ++ +F+ AL+ Y
Sbjct: 134 RRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGV 193
Query: 112 -GKVGCLER-----------------------------AIRVFKSMVIKDVCTWNAMISS 141
G VG + R A VF M ++D +W+ ++
Sbjct: 194 SGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGG 253
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ AL +F M E+G+R N+ V L+A AR L+E G + H+++ + +
Sbjct: 254 YVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPV 312
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
M +VD+ + G ++ A+E M
Sbjct: 313 CMNVGAALVDMYAKCGCVAVAREVFDGM 340
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+ Y +G +D A+ F M ++VVSW SII V+ G + EA+ +F M + V
Sbjct: 307 MINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG--VM 364
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T V++LSSC+ + G L LGKQ H YI N I LS + A+ID+Y K G L+ A
Sbjct: 365 ANDTTLVAILSSCSHM---GDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTA 421
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M K+ +WN +I +LA + KEA+ MF++M+ G+ +EITF +L+AC+ +
Sbjct: 422 MDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHS 481
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M F + P +EHY C+VDLLGR GLL EA ++ MP +PD V A
Sbjct: 482 GLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSA 541
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ +G + + ++ ++LLEL + G YV+LSN+++ +RW+ ++ K + + GI
Sbjct: 542 LLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGI 601
Query: 301 RKIPAYSLIE 310
+K A S IE
Sbjct: 602 KKCRAISFIE 611
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 38/276 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV G + SA +F+++ +R +VSW S+ING+ + G EA+ +F+ M V L P+
Sbjct: 179 YVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQ-EVGL-EPDVF 236
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V +LS G LG+ VH +++ I + + AL+D+Y K G L+ A VF
Sbjct: 237 TLVGLLSVST---KHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVF 293
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK----------------------- 161
M+ KDV +W MI++ A++ AL F++M K
Sbjct: 294 DQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVD 353
Query: 162 --------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
G+ AN+ T VA+L++C+ + LG + HS + + ++D+
Sbjct: 354 LFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQA-HSYIFDNNITLSATLCNAIIDMY 412
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G L A + MP E +A ++GA +HG
Sbjct: 413 AKCGALQTAMDVFFGMP-EKNAVSWNVIIGALALHG 447
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 139/305 (45%), Gaps = 20/305 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ V+ D+ A LF+ + + + + +I G+ + +++ +++ M+ + +
Sbjct: 74 LVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMV--CDGIL 131
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T VL +CA + +LG VH + + + A++++Y G + A
Sbjct: 132 PNQFTIPFVLKACAA---KSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSA 188
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + + + +WN+MI+ + R +EA++MF EM+E GL + T V +L+ +
Sbjct: 189 RRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKH 248
Query: 181 QLVELG-LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+LG H ++ E+ I+ + ++D+ + G L AK M + D
Sbjct: 249 GNFDLGRFVHLHMVVTGIEIDSIVTN--ALMDMYAKCGNLKCAKSVFDQM-LDKDVVSWT 305
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN----IHAGLERWNRATDLRKAM 295
++ A HG +D LE + G+ VV N H + A DL M
Sbjct: 306 CMINAYANHGLIDCA-------LEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRM 358
Query: 296 VEAGI 300
++G+
Sbjct: 359 CDSGV 363
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 187/312 (59%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G A +F M RDVVSWTS+I+GFV + EAI +F+ M+ + V
Sbjct: 137 LIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDG--VE 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEAT VSVL +CA + G + +G++V G I +I L + TALID+Y K G + A
Sbjct: 195 PNEATVVSVLRACA---DAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +V KDV W AMIS LA++ +EA+ +FD+M+ GLR +E T AVL+AC A
Sbjct: 252 RKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNA 311
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G F+SM K+ + P ++HYGC+VDLL R G L EA+EF+R MP EPD +
Sbjct: 312 GWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRT 371
Query: 241 LLGACKIHGAVDLCHEV--GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
L+ A K+HG +D ++ R LL++ CG YV+L N++A +W+ +R+ M +
Sbjct: 372 LIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQK 431
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 432 GLSKPPGCSRIE 443
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+ A L+ ++ ++ ++I + + +A+ +F +M+ RP++ TY
Sbjct: 42 GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L SCA L +GKQ+HG I ++ + ++ LI +Y G RA +VF M
Sbjct: 102 LLKSCARLKQP---RVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMR 158
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+DV +W +MI + R EA+ +F+EM E G+ NE T V+VL ACA A V +G
Sbjct: 159 DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMG 216
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G+ D ++ LF+ + K+D+VSWTS+IN NG A+ +F M N ++
Sbjct: 508 LIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQ-KAN-IQ 565
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS+L + AGL L GKQVHG+++R + + ++L+D+Y G + A
Sbjct: 566 PDSVALVSILVAIAGL---SSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYA 622
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
IRVF+ KDV W AMI++ + K+A+ +F M + GL + ++F+A+L AC+ +
Sbjct: 623 IRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHS 682
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LVE G M+ K+ + P EHY CVVD+LGR+G EA EF+++MP +P ++V A
Sbjct: 683 KLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCA 742
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H L +LLEL+P + G Y+++SN+ A + +WN A + R M E G+
Sbjct: 743 LLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGL 802
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 803 RKNPACSWIE 812
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNE 63
Y + G +D A LF M R V SW +++ ++ +G GEA+ V+ M + P+
Sbjct: 105 YGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDG 164
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T SVL +C EG G +VHG ++ + S + ALI +Y K G L+ A+RV
Sbjct: 165 CTLASVLKACGA---EGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRV 221
Query: 124 FKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
F+ + +DV +WN+++S N R EAL +F M+ G N T VAVL CA
Sbjct: 222 FEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELG 281
Query: 182 LVELGLELFHSML 194
L+ LG EL ++L
Sbjct: 282 LLSLGRELHAALL 294
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 105/181 (58%), Gaps = 5/181 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA+ +F + ++D +SW S+++ +V+N + EAI F M+ + +P+ A
Sbjct: 311 YAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHG--FQPDHA 368
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
VS LSS G ++ L G++ H Y ++ + + +G L+D+Y K G +E + +VF
Sbjct: 369 CVVS-LSSALGHLSR--LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVF 425
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+SM I+D +W +++ A +SR EAL M E++++G+ + + ++L C + +
Sbjct: 426 ESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSIS 485
Query: 185 L 185
L
Sbjct: 486 L 486
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I Y K G +DSA+ +FE + + RDV SW S+++G V+NG EA+ +F+ M
Sbjct: 205 LIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFP 264
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ N T V+VL CA L G L LG+++H +L+ L++ AL+ +Y K G ++
Sbjct: 265 M--NSYTSVAVLQVCAEL---GLLSLGRELHAALLKCGSELNI-QCNALLVMYAKYGRVD 318
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+RVF + KD +WN+M+S NS EA+ F EM + G + + V++ +A
Sbjct: 319 SALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALG 378
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ G E FH+ K + ++ ++D+ + G + + + SM
Sbjct: 379 HLSRLNNGRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESM 428
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 145/273 (53%), Gaps = 16/273 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K G ++ + +FE+M RD +SWT+I+ F ++ EA+ + + +V
Sbjct: 408 LMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMV- 466
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ S+L +C GL + + L KQVH Y +RN + L + + LID+YG+ G + +
Sbjct: 467 -DSMMIGSILETCCGLKS---ISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHS 521
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ + KD+ +W +MI+ +N R A+ +F EM++ ++ + + V++L A A
Sbjct: 522 LNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGL 581
Query: 181 QLVELGLELFHSMLGK-FEVV-PIMEHYGCVVDLLGRAGLLSEA-KEFMRSMPFEPDASV 237
+ G ++ ++ + F + P++ +VD+ G ++ A + F R+ D +
Sbjct: 582 SSLTKGKQVHGFLIRRNFPIEGPVVS---SLVDMYSGCGSMNYAIRVFERAKC--KDVVL 636
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE--LQPKH 268
A++ A +HG ++ +R+L+ L P H
Sbjct: 637 WTAMINATGMHGHGKQAIDLFKRMLQTGLTPDH 669
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 85 GKQVHGYILRNEIVLSV---FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
G+QVH + + + F+ T L+ +YG+ G ++ A R+F M + V +WNA++ +
Sbjct: 76 GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135
Query: 142 LASNSREKEALVMFDEMKEK---GLRANEITFVAVLTAC 177
S+ EA+ ++ M+ G + T +VL AC
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC 174
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K G ++ A +F+ M +++V+W S+I G+V N + + VFK M+ + VR
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIES--RVR 292
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + SVL C+ L L LG+Q+H + ++ + T+LI +Y K G L+ A
Sbjct: 293 PNPLSLSSVLLGCSNL---SALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSA 349
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KDV +WNAMIS A + ++AL +FD+M+ ++ + ITFVAV+ AC A
Sbjct: 350 WKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHA 409
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+LG++ F SM +F + HY CV+DLLGRAG L EA ++ MPF+P A++ G
Sbjct: 410 GFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGT 469
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +DL R LL L P YV L+NI+A +W++ +RK M E +
Sbjct: 470 LLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNV 529
Query: 301 RKIPAYSLIE 310
KIP YS IE
Sbjct: 530 VKIPGYSWIE 539
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 22/264 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y+++ +++A+ F M +D+ SW ++I+GF +NG +A +F M
Sbjct: 142 MLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM-------- 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS + +G V G L ++++ +N + SV + TA++ Y K G +E A
Sbjct: 194 -PEKNGVSWSAMISGYVEHGDLEAAEELY----KNVGMKSVVVETAMLTGYMKFGKVELA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F+ M +K++ TWN+MI+ N R ++ L +F M E +R N ++ +VL C+
Sbjct: 249 ERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNL 308
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG ++ H ++ K + ++ + + G L A + MP D A
Sbjct: 309 SALPLGRQM-HQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNA 366
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL 264
++ HGA GR+ L L
Sbjct: 367 MISGYAQHGA-------GRKALHL 383
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 197/313 (62%), Gaps = 6/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M ++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKS-VK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A +++Y K G ++ A
Sbjct: 213 PNHITLVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVA 269
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F + +++ +WN+MI SLA++ + EAL ++ +M ++G R + +TFV +L AC
Sbjct: 270 KRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G EL SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 330 GGMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L++L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 390 TLLGACSFHGNVEIAEIASEALMKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 449
Query: 300 IRKIPAYS-LIEA 311
+ K YS +EA
Sbjct: 450 MTKAAGYSYFVEA 462
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 40/239 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+RPN T+ + ++ A + L L +H R+ F TALI Y K+G L
Sbjct: 78 IRPNHHTFNFIFAASASFSSARPLRL---LHSQFFRSGFESDSFCCTALITAYAKLGALC 134
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-------------------- 158
A RVF M +DV WNAMI+ K A+ +FD M
Sbjct: 135 CARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGN 194
Query: 159 ------------KEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIME 204
K+K ++ N IT V+VL ACA +E+G LE + G F+ + +
Sbjct: 195 YSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVR- 253
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+++ + G++ AK + + + +++G+ HG D E+ ++L+
Sbjct: 254 --NATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQ 310
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 184/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD+A L F+ M + VSW ++I+G R G A+ + M +
Sbjct: 230 LVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN--FQ 287
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P TY SVLS+CA + G L GK VH +++++ + L F+G L+D+Y K G ++ A
Sbjct: 288 PTHFTYSSVLSACASI---GALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +V DV +WN M++ A + KE L F++M G+ NEI+F+ VLTAC+ +
Sbjct: 345 KRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F ++ K++V P + HY VDLLGR GLL A+ F+R MP EP A+V GA
Sbjct: 405 GLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGA 463
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H ++L R EL P G ++LSNI+A RW +RK M E+G+
Sbjct: 464 LLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGV 523
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 524 KKQPACSWVE 533
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 11/251 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
+++ Y K G +D A +F+ M +D+V+WT++I GF +N +A+ +F M+ G
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG---- 184
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+PN T S+L + +E GL G Q+H + L+ SV++G+AL+D+Y + G ++
Sbjct: 185 FQPNHFTLSSLLKASG---SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMD 241
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A F M K +WNA+IS A + AL + +M+ K + T+ +VL+ACA
Sbjct: 242 AAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACA 301
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+E G + H+ + K + I ++D+ +AG + +AK + +PD
Sbjct: 302 SIGALEQG-KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSW 359
Query: 239 GALLGACKIHG 249
+L C HG
Sbjct: 360 NTMLTGCAQHG 370
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 186/310 (60%), Gaps = 9/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y + G++DSA LF M R+VV+W S+I G+ +NG AI +FK M+ L
Sbjct: 333 MISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT- 391
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L G L LG V ++ N+I LS+ A+I +Y + G +E A
Sbjct: 392 PDEVTMVSVISACGHL---GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 448
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M +DV ++N +IS A++ EA+ + MKE G+ + +TF+ VLTAC+ A
Sbjct: 449 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 508
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G ++F S+ P ++HY C+VDLLGR G L +AK M MP EP A V G+
Sbjct: 509 GLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 563
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH V+L +L EL+P + G +++LSNI+A RW +R+AM + G+
Sbjct: 564 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 623
Query: 301 RKIPAYSLIE 310
+K +S +E
Sbjct: 624 KKTTGWSWVE 633
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 137/283 (48%), Gaps = 42/283 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
M+ GY K D+++A F+ M +R VVSW ++++G+ +NG E + +F M VN +
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEM---VNAGI 256
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK------ 113
P+E T+V+V+S+C+ + G L + + + +I L+ F+ TAL+D+Y K
Sbjct: 257 EPDETTWVTVISACS---SRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGA 313
Query: 114 --------------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VG L+ A +F +M ++V TWN+MI+ A N +
Sbjct: 314 ARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQ 373
Query: 148 EKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A+ +F EM K L +E+T V+V++AC +ELG + L + ++ + +
Sbjct: 374 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVV-RFLTENQIKLSISGH 432
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++ + R G + +AK + M D L+ HG
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHG 474
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 24/255 (9%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
LLF + L +V +TS++ + + + +F++M G VRP+ Y +L AG
Sbjct: 55 LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCG--VRPDAFVY-PILIKSAG 111
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVC 133
GG+ H ++L+ F+ A+ID+Y ++G + A +VF + + V
Sbjct: 112 ---NGGI----GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVA 164
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
WNAM+S E +A +FD M E+ N IT+ A++T A+ + +E F M
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCM 220
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGA 250
+ V + ++ + GL E M EPD + ++ AC G
Sbjct: 221 PERSVV-----SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGD 275
Query: 251 VDLCHEVGRRLLELQ 265
L + R L + Q
Sbjct: 276 PCLAASLVRTLHQKQ 290
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y D+D A +F+ +L+ VVS+ +II G+ R+ EA+ +F+ + ++
Sbjct: 168 LINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARK--LK 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T +SVLSSCA L G L LGK +H Y+ +N + V + TALID+Y K G L+ A
Sbjct: 226 PNDVTVLSVLSSCALL---GALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+SM ++D W+AMI + A + + ++ + MF+EM ++ +EITF+ +L AC+
Sbjct: 283 ISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHT 342
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM + ++P ++HYGC+VDLLGRAGLL EA +F+ +P +P +
Sbjct: 343 GLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRT 402
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C HG ++L +V ++LEL H G YV+LSN+ A +W LRK M+ G
Sbjct: 403 LLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGA 462
Query: 301 RKIPAYSLIE 310
KIP S IE
Sbjct: 463 VKIPGCSSIE 472
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 127/242 (52%), Gaps = 7/242 (2%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
MD A LFE + + D+V + S+ G+ R+ +AI +F + N NL+ P++ T+
Sbjct: 74 TASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKAL-NYNLL-PDDYTFP 131
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
S+L +C V GKQ+H ++ + + ++ LI++Y ++ A RVF +
Sbjct: 132 SLLKAC---VVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEI 188
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ V ++NA+I+ A +SR EAL +F +++ + L+ N++T ++VL++CA ++LG
Sbjct: 189 LEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG- 247
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ H + K + ++ ++D+ + G L A SM D A++ A +
Sbjct: 248 KWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAM 306
Query: 248 HG 249
HG
Sbjct: 307 HG 308
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 190/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G +DSA LFE M R+VVSWT++++G+ +NG EA+ F M V+
Sbjct: 159 LLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAG-VQ 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA + G + LG++V Y ++ +V++ AL+++Y K G + +A
Sbjct: 218 PNELTVSSVLPACAAV---GAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQA 274
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF+ + +D+C+WN+MI + A + +EAL +F +++ G++ + ITFV V+ AC
Sbjct: 275 WQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTH 334
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G F SM +F + P +EHYGC+VDLLGRAGLL E+ + SMP EPDA + G
Sbjct: 335 GGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWG 394
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG V+L +L+ L+P++ V+LSNI+A +W+ + K + E
Sbjct: 395 ALLGACSFHGNVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD 454
Query: 300 IRKIPAYSLIE 310
+K YS IE
Sbjct: 455 HKKSAGYSFIE 465
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GL 163
AL+ Y K G ++ A ++F+ M ++V +W AM+S A N R +EA+ F EM E+ G+
Sbjct: 157 NALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGV 216
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ NE+T +VL ACA +ELG ++ GK + + ++++ + G + +A
Sbjct: 217 QPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYV-ANALLEMYSKCGSIRQAW 275
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
+ + + + D +++ A +HG
Sbjct: 276 QVFQGIGRQQDLCSWNSMIMAFAVHG 301
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K GD+D + LF M KR VVSW +I+ ++ EA+ +F +M+ +
Sbjct: 179 MIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWG--FK 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
P+EAT V+VL CA L G + +GK +H Y + + V +G AL+D Y K G E
Sbjct: 237 PDEATVVTVLPICARL---GSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFET 293
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF M K+V +WN +IS LA N + + + +EM +G+R N+ TFV VL+ CA
Sbjct: 294 ARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAH 353
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-FEPDASVL 238
A L E G EL SM+ ++ P +EHYGC+VDLLGR+G + EA + +R MP P+A++
Sbjct: 354 AGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALW 413
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL AC+ HG V+L H + L++L+P + G YV+LSN++A ERW++ ++R M E
Sbjct: 414 GSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREK 473
Query: 299 GIRKIPAYSLI 309
++K P S+I
Sbjct: 474 NVKKTPGQSVI 484
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 54/327 (16%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A +F+ ++ + ++I G+ NG F E+ +F +M + P+E T +L
Sbjct: 57 MAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRG--IWPDEYTLAPLL 114
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA-----LIDLYGKVGCLERAIRVFK 125
+C+ L G L LGK +H E+++ F G + +I+LY G +E A +VF
Sbjct: 115 KACSSL---GVLQLGKCMH-----KEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFD 166
Query: 126 SMVIKDV-------------------------------CTWNAMISSLASNSREKEALVM 154
M +DV +WN MIS LA + R+ EAL +
Sbjct: 167 EMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGL 226
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLL 213
F +M + G + +E T V VL CAR V++G + HS + G +VD
Sbjct: 227 FHDMLDWGFKPDEATVVTVLPICARLGSVDVG-KWIHSYAKSSGLYRDFVAVGNALVDFY 285
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGR 271
++G+ A+ MP + L+ ++G +L E+ ++ ++P
Sbjct: 286 NKSGMFETARRVFDEMP-RKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATF 344
Query: 272 YVVLS-NIHAGLERWNRATDLRKAMVE 297
VLS HAGL + R +L +MVE
Sbjct: 345 VGVLSCCAHAGL--FERGRELLASMVE 369
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+++H + LR+ + + + + + G + + A R+FK + +NAMI + N
Sbjct: 26 REIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLN 85
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML----GKFEVVP 201
+E+ +F MK +G+ +E T +L AC+ +++LG + +L F +
Sbjct: 86 GPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIR 145
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL-GACKIHGAVDL 253
I V++L G++ +A++ M ++ D V ++ G CK G VD+
Sbjct: 146 I-----GVIELYSSCGVMEDAEKVFDEM-YQRDVIVWNLMIHGFCK-RGDVDM 191
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 190/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G +DSA LFE M R+VVSWT++++G+ +NG EA+ F M V+
Sbjct: 159 LLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAG-VQ 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA + G + LG++V Y ++ +V++ AL+++Y K G + +A
Sbjct: 218 PNELTVSSVLPACAAV---GAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQA 274
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF+ + +D+C+WN+MI + A + +EAL +F +++ G++ + ITFV V+ AC
Sbjct: 275 WQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTH 334
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV G F SM +F + P +EHYGC+VDLLGRAGLL E+ + SMP EPDA + G
Sbjct: 335 GGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWG 394
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG V+L +L+ L+P++ V+LSNI+A +W+ + K + E
Sbjct: 395 ALLGACSFHGNVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKD 454
Query: 300 IRKIPAYSLIE 310
+K YS IE
Sbjct: 455 HKKSAGYSFIE 465
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GL 163
AL+ Y K G ++ A ++F+ M ++V +W AM+S A N R +EA+ F EM E+ G+
Sbjct: 157 NALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGV 216
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ NE+T +VL ACA +ELG ++ GK + + ++++ + G + +A
Sbjct: 217 QPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYV-ANALLEMYSKCGSIRQAW 275
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
+ + + + D +++ A +HG
Sbjct: 276 QVFQGIGRQQDLCSWNSMIMAFAVHG 301
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+NG++D+A FE M ++++VSW +II+G V+ F EAI VF +M V
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG-VN 467
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +S+ S+C L G L L K ++ YI +N I L V +GT L+D++ + G E A
Sbjct: 468 ADGVTMMSIASACGHL---GALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F S+ +DV W A I ++A + A+ +FD+M E+GL+ + + FV LTAC+
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+F+SML V P HYGC+VDLLGRAGLL EA + + MP EP+ + +
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G V++ ++ L P+ G YV+LSN++A RWN +R +M E G+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 705 RKPPGTSSIQ 714
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G++DSA +F+ M +R+VVSWTS+I G+ R +A+ +F M+ + V PN
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE-VTPNSV 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V V+S+CA L + L G++V+ +I + I ++ M +AL+D+Y K ++ A R+F
Sbjct: 238 TMVCVISACAKLED---LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ NAM S+ +EAL +F+ M + G+R + I+ ++ +++C++
Sbjct: 295 DEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K +D A LF+ ++ ++ + +VR G EA+ VF MM + VR
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG--VR 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S +SSC+ L N + GK HGY+LRN + ALID+Y K + A
Sbjct: 335 PDRISMLSAISSCSQLRN---ILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K V TWN++++ N A F+ M EK N +++ +++ +
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK----NIVSWNTIISGLVQG 447
Query: 181 QLVELGLELFHSMLGK 196
L E +E+F SM +
Sbjct: 448 SLFEEAIEVFCSMQSQ 463
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G+ +G EAI +F MM + + P++ T+ LS+CA +G G Q+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSG--ISPDKYTFPFGLSACAKSRAKGN---GIQI 156
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG I++ +F+ +L+ Y + G L+ A +VF M ++V +W +MI A
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216
Query: 149 KEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELF 190
K+A+ +F M +++ + N +T V V++ACA+ + +E G +++
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GDMD A +FE ML++DV+SWTS++ G+ +N E++ +F +M V V
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDM--RVTGVN 462
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ S+LS+CA L L GKQVH +++ + S + +L+ +Y K GCL+ A
Sbjct: 463 PDQFIVASILSACAELT---LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDA 519
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F SM +KDV TW A+I A N + + +L +D M G R + ITF+ +L AC+ A
Sbjct: 520 DAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHA 579
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M + + P EHY C++DL GR+G L EAK+ + M +PDA+V +
Sbjct: 580 GLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKS 639
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L L EL+P + YV+LSN+++ +WN +RK M GI
Sbjct: 640 LLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGI 699
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 700 VKEPGCSWLE 709
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 10/230 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ +A + E M DVVSW S++ GFVR+G EA+ +FKNM G ++
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN--MK 363
Query: 61 PNEATYVSVLSSCA-GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
++ T+ SVL+ C G +N K VHG I++ + AL+D+Y K G ++
Sbjct: 364 IDDYTFPSVLNCCVVGSINP------KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDC 417
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF+ M+ KDV +W ++++ A N+ +E+L +F +M+ G+ ++ ++L+ACA
Sbjct: 418 AYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAE 477
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+E G ++ H K + Y +V + + G L +A SM
Sbjct: 478 LTLLEFGKQV-HLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++D Y K + A LF+ + +++ V WT+++ G+ +NG +A+ F+ M +
Sbjct: 203 LVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYM--HAQG 260
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V N+ T+ ++L++C+ ++ G+QVHG+I+++ +V++ +AL+D+Y K G L+
Sbjct: 261 VECNQYTFPTILTACSSVLARC---FGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLK 317
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A + ++M DV +WN+++ + E+EAL +F M + ++ ++ TF +VL C
Sbjct: 318 NAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC 376
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 39/256 (15%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIIN-------------------------------G 35
K+G ++ A LF+ M ++D SW ++I+ G
Sbjct: 77 KSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISG 136
Query: 36 FVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN 95
+ + GC EA +F++M + + ++ T SVL C+ L G + G+ +HG++++N
Sbjct: 137 YCKFGCKVEAFDLFRSM--RLEGWKASQFTLGSVLRVCSSL---GLIQTGEMIHGFVVKN 191
Query: 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALV 153
+VF+ T L+D+Y K C+ A +FK + K+ W AM++ A N +A+
Sbjct: 192 GFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVE 251
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
F M +G+ N+ TF +LTAC+ G E H + K + +VD+
Sbjct: 252 FFRYMHAQGVECNQYTFPTILTACSSVLARCFG-EQVHGFIVKSGFGSNVYVQSALVDMY 310
Query: 214 GRAGLLSEAKEFMRSM 229
+ G L AK + +M
Sbjct: 311 AKCGDLKNAKNMLETM 326
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 32/170 (18%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD--- 156
S++ L++ K G + A ++F M KD +WN MISS + R EA +FD
Sbjct: 64 SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123
Query: 157 ----------------------------EMKEKGLRANEITFVAVLTACARAQLVELGLE 188
M+ +G +A++ T +VL C+ L++ G E
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTG-E 182
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ H + K + +VD+ + +SEA+ + + F+ VL
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVL 232
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 196/314 (62%), Gaps = 11/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
+ID Y K G+M+ A LFE + +DV+SW ++I G+ EA+ VF+ M+ G
Sbjct: 251 LIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET-- 308
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGC 116
PN+ T +S+L +CA L G + +G+ +H YI + I+ + + T+LID+Y K G
Sbjct: 309 --PNDVTMLSILPACAHL---GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGN 363
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF +++ K + + NAMI A + R A + MK+ G+ ++ITFV +L+A
Sbjct: 364 IEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSA 423
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A L +LG ++F SM + + P +EHYGC++DLLGR+GL EA+E + SM EPD
Sbjct: 424 CSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGV 483
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LL ACKIH ++L + ++L++++PK+ G YV+LSNI+A RW+ +R +
Sbjct: 484 IWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLN 543
Query: 297 EAGIRKIPAYSLIE 310
+ G++K+P S IE
Sbjct: 544 DKGLKKVPGCSSIE 557
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 155/291 (53%), Gaps = 10/291 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G+MD A +F+ + +DVVSW ++I+G+ G + EA+ +F MM V+
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMD--VK 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T +VLS+C + G + LG+Q+H +I + ++ + ALIDLY K G +ERA
Sbjct: 208 PDESTMATVLSTC---THSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I A + KEAL++F EM + G N++T +++L ACA
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324
Query: 181 QLVELGLELFHSMLGKFE-VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+++G + + K + ++ ++D+ + G + A + ++ S
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI-LNKSLSSCN 383
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGLERWNR 287
A++ +HG D ++ R+ + ++P +LS HAGL R
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 39/251 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEATYVSVLSS 72
AI +F+++ + + +SW ++I G + A+ ++ M ++L + PN T+ + S
Sbjct: 31 AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYM---ISLGLSPNSYTFPFLFKS 87
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------ 126
CA GKQ+H IL+ + + + + T+LI +Y + G +E A +VF +
Sbjct: 88 CA---KSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144
Query: 127 -------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+ IKDV +WNAMIS A R KEAL +F+EM +
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
++ +E T VL+ C + VELG ++ HS + ++ ++DL + G +
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELGRQI-HSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263
Query: 222 AKEFMRSMPFE 232
A + ++
Sbjct: 264 AHGLFEGLQYK 274
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AI VFKS+ + +WN MI A +S AL ++ M GL N TF + +
Sbjct: 28 LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA+++ + G ++ H+ + K+ + + + ++ + + G++ +A + + D
Sbjct: 88 CAKSKAAQEGKQI-HAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR-DVV 145
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
A++ G +D + + E+ K + + + +A + R+ A +L M+
Sbjct: 146 SYTAMITGYASRGNMD---KAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202
Query: 297 EAGIR 301
+ ++
Sbjct: 203 KMDVK 207
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 187/294 (63%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F++ K D V+W+++I GFVR GC A+ +F+ M V V P+E T VSVLS+CA L
Sbjct: 184 VFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREM--QVMGVCPDEITMVSVLSACADL 241
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L LGK V Y+ + I SV + ALID++ K G +++AI++F+ M + + +W
Sbjct: 242 ---GALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWT 298
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
++I+ LA + R +A+ +FDEM E G+ +++ F+ VL+AC+ + LV+ G F SM
Sbjct: 299 SVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERN 358
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
F +VP +EHYGC+VDLL R G + EA EF++ MPFEP+ + ++ AC G + L
Sbjct: 359 FSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGES 418
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ + L++ +P H YV+LSNI+A L +W + T +R+ M G++K+P ++IE
Sbjct: 419 ISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIE 472
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--C 116
V PN+ T+ VL CAG+ G L LGK VHG +++ V + LI +Y +G
Sbjct: 121 VTPNKFTFPFVLKGCAGI---GSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDG 177
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
E A +VF D TW+AMI+ A+ +F EM+ G+ +EIT V+VL+A
Sbjct: 178 FEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSA 237
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
CA +ELG + S + K + +E ++D+ + G + +A + R M
Sbjct: 238 CADLGALELG-KWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQM 289
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K G++D AI LF M R +VSWTS+I G +G +A+ +F M+ N +
Sbjct: 269 LIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENG--IT 326
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ ++ VLS+C +GLV++G Y G + IV V ++DL + G ++
Sbjct: 327 PDDVAFIGVLSACSHSGLVDKGRYYFGSMERNF----SIVPKVEHYGCMVDLLCRGGFVK 382
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A + M + + W +I++
Sbjct: 383 EAFEFVQKMPFEPNQIIWRTIITA 406
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 201/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++ GY K G+MD A L E M R+ VSWT +I+G+ ++G EAI VF+ M+ +
Sbjct: 188 LLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRML--MEN 245
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+E T ++VLS+CA L G L LG+++ Y+ + +V + A+ID+Y K G +
Sbjct: 246 VEPDEVTLLAVLSACADL---GSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A+ VF+ + ++V TW +I+ LA++ EAL MF+ M + G+R N++TF+A+L+AC+
Sbjct: 303 KALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACS 362
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
V+LG LF+SM K+ + P +EHYGC++DLLGRAG L EA E ++SMPF+ +A++
Sbjct: 363 HVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIW 422
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL A +H ++L L++L+P + G Y++L+N+++ L RW+ + +R M
Sbjct: 423 GSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGI 482
Query: 299 GIRKIPAYSLIE 310
G++K+ S IE
Sbjct: 483 GVKKMAGESSIE 494
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T+ VL V ++ G+Q+HG ++ SV + T LI +Y G L
Sbjct: 113 KPDTFTFPFVLKIA---VRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGD 169
Query: 120 AIRVFKSMVIKDVCTWNAM---------------------------------ISSLASNS 146
A ++F M++KDV WNA+ IS A +
Sbjct: 170 ARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSG 229
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
R EA+ +F M + + +E+T +AVL+ACA +ELG E S + + +
Sbjct: 230 RASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG-ERICSYVDHRGMNRAVSLN 288
Query: 207 GCVVDLLGRAGLLSEA 222
V+D+ ++G +++A
Sbjct: 289 NAVIDMYAKSGNITKA 304
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G M A LF +M + +V+WT++++G+ G + A+ F++M
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSM--QTEGFE 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ + V+VL +CA L G L LG+ ++ Y R+ ++ S + AL+++Y K GC+++A
Sbjct: 249 PDDVSIVAVLPACAQL---GALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+++F M KDV +W+ +I LA++ R EA+ +F EM+++G +R N ITFV +L+AC+
Sbjct: 306 LQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSY 365
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ GL F M + V P +EHYGCVVDLLGR+G + A + +R MP DA V G
Sbjct: 366 AGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWG 425
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ HG VD RL+EL+P G V+L+N++A RW+ RKA+
Sbjct: 426 SLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRS 485
Query: 300 IRKIPAYSLIE 310
+RK P SLIE
Sbjct: 486 MRKTPGCSLIE 496
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 57/273 (20%)
Query: 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-----TYVSVLSSCAGLVNEGGLYLG 85
++I + +N +A+ V+ M+ A TY +L +C G L LG
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGG---TAALELG 138
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQVH +++R+ S + +LI++Y + G L A +VF M +DV +WN +IS+ A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARL 198
Query: 146 SREKEALVMFDEMKEK-------------------------------GLRANEITFVAVL 174
+ ++A +F+ M +K G ++++ VAVL
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 175 TACARAQLVELGLELF-----HSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
ACA+ +ELG ++ H ML + +ME Y + G + +A +
Sbjct: 259 PACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMY-------AKCGCIDQALQLFDG 311
Query: 229 MPFEPD----ASVLGALLGACKIHGAVDLCHEV 257
M + D ++V+G L + H AV L E+
Sbjct: 312 MA-DKDVISWSTVIGGLAAHGRAHEAVWLFTEM 343
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VHG+++R I S ++ T ++ L + A RVF + ++ NAMI + A N
Sbjct: 32 RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91
Query: 147 REKEALVMFDEM-------KEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFE 198
+ ++A+ ++ M + + T+ +L AC +ELG ++ H + +
Sbjct: 92 QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
I+++ ++++ RAG L+ A + M
Sbjct: 152 SSAIVQN--SLIEMYTRAGDLALAHKVFDEM 180
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+NG++D+A FE M ++++VSW +II+G V+ F EAI VF +M V
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG-VN 467
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +S+ S+C L G L L K ++ YI +N I L V +GT L+D++ + G E A
Sbjct: 468 ADGVTMMSIASACGHL---GALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F S+ +DV W A I ++A + A+ +FD+M E+GL+ + + FV LTAC+
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+F+SML V P HYGC+VDLLGRAGLL EA + + MP EP+ + +
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G V++ ++ L P+ G YV+LSN++A RWN +R +M E G+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 705 RKPPGTSSIQ 714
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G++DSA +F+ M +R+VVSWTS+I G+ R +A+ +F M+ + V PN
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE-VTPNSV 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V V+S+CA L + L G++V+ +I + I ++ M +AL+D+Y K ++ A R+F
Sbjct: 238 TMVCVISACAKLED---LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ NAM S+ +EAL +F+ M + G+R + I+ ++ +++C++
Sbjct: 295 DEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K +D A LF+ ++ ++ + +VR G EA+ VF MM + VR
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG--VR 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S +SSC+ L N + GK HGY+LRN + ALID+Y K + A
Sbjct: 335 PDRISMLSAISSCSQLRN---ILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K V TWN++++ N A F+ M EK N +++ +++ +
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK----NIVSWNTIISGLVQG 447
Query: 181 QLVELGLELFHSMLGK 196
L E +E+F SM +
Sbjct: 448 SLFEEAIEVFCSMQSQ 463
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G+ +G EAI +F MM + + P++ T+ LS+CA +G G Q+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSG--ISPDKYTFPFGLSACAKSRAKGN---GIQI 156
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG I++ +F+ +L+ Y + G L+ A +VF M ++V +W +MI A
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216
Query: 149 KEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELF 190
K+A+ +F M +++ + N +T V V++ACA+ + +E G +++
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+++NG ++ A+ F M ++VV+WT++I+G V++G EA+ +F M N V+
Sbjct: 290 MITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQA-ANNVK 348
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+VSVL +C+ L L G+Q+H I + + +ALI++Y K G LE A
Sbjct: 349 PNEGTFVSVLGACSKL---AALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELA 405
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F I +DV +WN MI++ A + +A+ +FDEM+ G R + +T++A+L+AC+
Sbjct: 406 RKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACS 465
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ GL+LF +++ + +H+ C+VDL GRAG L EA +F++ + +P ASV
Sbjct: 466 HAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVW 525
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALL C +HG +DL +LLE +P++ G Y+VLSNI+A +W A +R M +
Sbjct: 526 AALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDK 585
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 586 GLKKQPGCSWIE 597
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 136/311 (43%), Gaps = 64/311 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY + G +D A+ LFE M +R+VVSW ++I F++ EA +F N M +++
Sbjct: 166 MIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELF-NRMPERDVI- 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGK-QVHGYILRNEIVLSVFMG--------------- 104
+ T V+ LS G +++ L K V + N +++
Sbjct: 224 -SWTTMVAGLSK-NGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPE 281
Query: 105 ------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
+I + + G LERA+ F M K+V TW A+IS + R +EAL +F EM
Sbjct: 282 RELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEM 341
Query: 159 K-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
+ ++ NE TFV+VL AC++ + G ++ H ++ K + + ++++ + G
Sbjct: 342 QAANNVKPNEGTFVSVLGACSKLAALCEGQQI-HQIISKTVYQEVADVVSALINMYSKCG 400
Query: 218 LLSEAKEF------------------------------------MRSMPFEPDASVLGAL 241
L A++ M+++ F PD AL
Sbjct: 401 ELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIAL 460
Query: 242 LGACKIHGAVD 252
L AC G VD
Sbjct: 461 LSACSHAGLVD 471
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 52/224 (23%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K G + A +FE M RDVVSWT++I G+++ G EA +F
Sbjct: 78 KEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD---------------- 121
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
RN+ + +V TAL+ Y + +E A R+F +
Sbjct: 122 ---------------------------RNDAIKNVVTWTALVSGYVRWNRIEEARRLFDA 154
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M +K+V +WN MI A +AL +F++M E+ N +++ V+TA + + V+
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEKMPER----NVVSWNTVITAFMQRRRVDEA 210
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
ELF+ M + +V+ + +V L + G + +A+ MP
Sbjct: 211 QELFNRMPER-DVIS----WTTMVAGLSKNGRIDDARLLFDKMP 249
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 38/271 (14%)
Query: 1 MIDGYVKNGDMDSAILLFE-NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I GY+K G ++ A LF+ N ++VV+WT++++G+VR EA +F M
Sbjct: 103 VITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAM------P 156
Query: 60 RPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMG------------- 104
N ++ +++ A G +++ K ++ V++ FM
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNR 216
Query: 105 ---------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
T ++ K G ++ A +F M +++V +WN MI A N R EA +F
Sbjct: 217 MPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLF 276
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
++M E+ L ++ ++T + +E ++ F+ M K V G V D GR
Sbjct: 277 EQMPERELS----SWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD--GR 330
Query: 216 A-GLLSEAKEFMRSMPFEPDASVLGALLGAC 245
+ L E + +P+ ++LGAC
Sbjct: 331 SEEALKIFSEMQAANNVKPNEGTFVSVLGAC 361
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 192/328 (58%), Gaps = 23/328 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVS------------------WTSIINGFVRNGCF 42
+I+ Y K G + A +F+ M +RDVV+ WT++I+G VRNG
Sbjct: 171 LIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGES 230
Query: 43 GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF 102
A+ VF+NM V PNE T V VLS+C+ L G L LG+ V Y+ ++ I L+ F
Sbjct: 231 NRALEVFRNMQRED--VMPNEVTIVCVLSACSEL---GALQLGRWVRSYMDKHRIELNHF 285
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+G ALI++Y + G ++ A RVF+ M K+V T+N+MI A + + EA+ +F + ++G
Sbjct: 286 VGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQG 345
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ +TFV VL AC+ L ELG E+FHSM + + P +EHYGC+VDLLGR G L EA
Sbjct: 346 FTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA 405
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282
F+R M PD +LGALL ACKIHG ++L V + L+ + G Y++LSN ++
Sbjct: 406 YSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSS 465
Query: 283 ERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+W A ++R M E GI K P S IE
Sbjct: 466 GKWKEAAEVRTNMREEGIEKEPGCSSIE 493
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 29/253 (11%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + +V +T++I+G V + + + I ++ M+ N +LV P+ SVL +C
Sbjct: 86 IFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI-NSSLV-PDSYAVTSVLKACGCH 143
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-------- 128
+ L G++VH +L+ + + + LI+LYGK G E A RVF M
Sbjct: 144 L---ALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAST 200
Query: 129 ----------IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
IKD W AMI L N AL +F M+ + + NE+T V VL+AC+
Sbjct: 201 VMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACS 260
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
++LG S + K + + H+ G ++++ R G + EA+ M E +
Sbjct: 261 ELGALQLG-RWVRSYMDKHRIE--LNHFVGGALINMYSRCGDIDEAQRVFEQMK-EKNVI 316
Query: 237 VLGALLGACKIHG 249
+++ +HG
Sbjct: 317 TYNSMIMGFALHG 329
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G M A LF +M + +V+WT++++G+ G + A+ F++M
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSM--QTEGFE 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ + V+VL +CA L G L LG+ ++ Y R+ ++ S + AL+++Y K GC+++A
Sbjct: 249 PDDVSIVAVLPACAQL---GALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+++F M KDV +W+ +I LA++ R EA+ +F EM+++G +R N ITFV +L+AC+
Sbjct: 306 LQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSY 365
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ GL F M + V P +EHYGCVVDLLGR+G + A + +R MP DA V G
Sbjct: 366 AGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWG 425
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ HG VD RL+EL+P G V+L+N++A RW+ RKA+
Sbjct: 426 SLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRS 485
Query: 300 IRKIPAYSLIE 310
+RK P SLIE
Sbjct: 486 MRKTPGCSLIE 496
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 57/273 (20%)
Query: 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-----TYVSVLSSCAGLVNEGGLYLG 85
++I + +N +A+ V+ M+ A TY +L +C G L LG
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGG---TAALELG 138
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQVH +++R+ S + +LI++Y + G L A +VF M +DV +WN +IS+ A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARL 198
Query: 146 SREKEALVMFDEMKEK-------------------------------GLRANEITFVAVL 174
+ ++A +F+ M +K G ++++ VAVL
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 175 TACARAQLVELGLELF-----HSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
ACA+ +ELG ++ H ML + +ME Y + G + +A +
Sbjct: 259 PACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMY-------AKCGCIDQALQLFDG 311
Query: 229 MPFEPD----ASVLGALLGACKIHGAVDLCHEV 257
M + D ++V+G L + H AV L E+
Sbjct: 312 MA-DKDVISWSTVIGGLAAHGRAHEAVWLFTEM 343
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VHG+++R I S ++ T ++ L + A RVF + ++ NAMI + A N
Sbjct: 32 RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91
Query: 147 REKEALVMFDEM-------KEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFE 198
+ ++A+ ++ M + + T+ +L AC +ELG ++ H + +
Sbjct: 92 QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
I+++ ++++ RAG L+ A + M
Sbjct: 152 SSAIVQN--SLIEMYTRAGDLALAHKVFDEM 180
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A L+F+++ +R VSWT++I+G+V+ G G + +F M G+ NL R
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGS-NL-R 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T+ +VL + A L LGKQ+H +I+R+ + +VF G+ L+D+Y K G ++ A
Sbjct: 450 ADQSTFATVLKASASF---ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M ++ +WNA+IS+ A N + A+ F +M E GL+ + ++ + VLTAC+
Sbjct: 507 VQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHC 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G E F +M + + P +HY C++DLLGR G +EA++ M MPFEPD + +
Sbjct: 567 GFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSS 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L AC+IH L +L ++ + YV +SNI+A W + D++KAM E G
Sbjct: 627 VLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERG 686
Query: 300 IRKIPAYSLIE 310
I+K+PAYS +E
Sbjct: 687 IKKVPAYSWVE 697
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 5/191 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+VK GD+ SA LF+ M R VV+WT ++ + RN F EA +F+ M + +
Sbjct: 85 MISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL 144
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA--LIDLYGKVGCLE 118
P+ T+ ++L C V + + QVH + ++ + F+ + L+ Y +V L+
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAV---GQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLD 201
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F+ + KD T+N +I+ + E++ +F +M++ G + ++ TF VL A
Sbjct: 202 LACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV 261
Query: 179 RAQLVELGLEL 189
LG +L
Sbjct: 262 GLHDFALGQQL 272
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 11/251 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K+ + +LF+ M + D VS+ +I+ + + + ++ F+ M MG
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + ++LS A L L +G+Q+H L + +G +L+D+Y K E
Sbjct: 351 NFP----FATMLSIAANL---SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +FKS+ + +W A+IS L +F +M+ LRA++ TF VL A A
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LG +L ++ + + G +VD+ + G + +A + MP + +A
Sbjct: 464 SFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSW 521
Query: 239 GALLGACKIHG 249
AL+ A +G
Sbjct: 522 NALISAHADNG 532
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 10/253 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + +D A +LFE + ++D V++ ++I G+ ++G + E+I +F M + + +
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH--Q 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ VL + GL + LG+Q+H + +G ++D Y K +
Sbjct: 248 PSDFTFSGVLKAVVGLHD---FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M D ++N +ISS + + + +L F EM+ G F +L+ A
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+++G +L L + H G +VD+ + + EA+ +S+P S
Sbjct: 365 SSLQMGRQLHCQAL--LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTA 422
Query: 240 ALLGACK--IHGA 250
+ G + +HGA
Sbjct: 423 LISGYVQKGLHGA 435
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+++NG ++ A+ F M ++VV+WT++I+G V++G EA+ +F M N V+
Sbjct: 290 MITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQA-ANNVK 348
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+VSVL +C+ L L G+Q+H I + + +ALI++Y K G LE A
Sbjct: 349 PNEGTFVSVLGACSKL---AALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELA 405
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F I +DV +WN MI++ A + +A+ +FDEM+ G R + +T++A+L+AC+
Sbjct: 406 RKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACS 465
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ GL+LF +++ + +H+ C+VDL GRAG L EA +F++ + +P ASV
Sbjct: 466 HAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVW 525
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALL C +HG +DL +LLE +P++ G Y+VLSNI+A +W A +R M +
Sbjct: 526 AALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDK 585
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 586 GLKKQPGCSWIE 597
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 64/311 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY + G +D A+ LFE M +R+VVSW ++I F++ EA +F N M +++
Sbjct: 166 MIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELF-NRMPERDVI- 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGK-----------QVHGYI--LRNEIVLSVF----- 102
+ T V+ LS G +++ L K + GY +R + +F
Sbjct: 224 -SWTTMVAGLSK-NGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPE 281
Query: 103 ----MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
+I + + G LERA+ F M K+V TW A+IS + R +EAL +F EM
Sbjct: 282 RELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEM 341
Query: 159 K-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
+ ++ NE TFV+VL AC++ + G ++ H ++ K + + ++++ + G
Sbjct: 342 QAANNVKPNEGTFVSVLGACSKLAALCEGQQI-HQIISKTVYQEVADVVSALINMYSKCG 400
Query: 218 LLSEAKEF------------------------------------MRSMPFEPDASVLGAL 241
L A++ M+++ F PD AL
Sbjct: 401 ELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIAL 460
Query: 242 LGACKIHGAVD 252
L AC G VD
Sbjct: 461 LSACSHAGLVD 471
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 52/224 (23%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K G + A +FE M RDVVSWT++I G+++ G EA +F
Sbjct: 78 KEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD---------------- 121
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
RN+ + +V TAL+ Y + +E A R+F +
Sbjct: 122 ---------------------------RNDAIKNVVTWTALVSGYVRWNRIEEARRLFDA 154
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M +K+V +WN MI A +AL +F+ M E+ N +++ V+TA + + V+
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEXMPER----NVVSWNTVITAFMQRRRVDEA 210
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
ELF+ M + +V+ + +V L + G + +A+ MP
Sbjct: 211 QELFNRMPER-DVIS----WTTMVAGLSKNGRIDDARLLFDKMP 249
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 38/271 (14%)
Query: 1 MIDGYVKNGDMDSAILLFE-NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I GY+K G ++ A LF+ N ++VV+WT++++G+VR EA +F M
Sbjct: 103 VITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAM------P 156
Query: 60 RPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMG------------- 104
N ++ +++ A G +++ ++ V++ FM
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNR 216
Query: 105 ---------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
T ++ K G ++ A +F M +++V +WN MI A N R EA +F
Sbjct: 217 MPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLF 276
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
++M E+ L ++ ++T + +E ++ F+ M K V G V D GR
Sbjct: 277 EQMPERELS----SWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD--GR 330
Query: 216 A-GLLSEAKEFMRSMPFEPDASVLGALLGAC 245
+ L E + +P+ ++LGAC
Sbjct: 331 SEEALKIFSEMQAANNVKPNEGTFVSVLGAC 361
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK G+M+SA +LF+ +DVVSW ++I G+V G +A+ +F M V
Sbjct: 211 MITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAG--VF 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+E T +S+LS+CA L G L GK+VH ++ + LS +G ALID+Y K G ++
Sbjct: 269 PDEVTLLSLLSACADL---GDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKE 325
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ VF S+ KDV +WN++I +A + KE+L +F M+ + NEITFV VL AC+
Sbjct: 326 SLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSH 385
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A ++ G + F M ++++ P + H GC+VD+LGRAGLL EA +F+ SM EP+A +
Sbjct: 386 AGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWR 445
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL ACK+HG V+L +L ++ H G YV++SN++A W+ A +RK M ++G
Sbjct: 446 TLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSG 505
Query: 300 IRKIPAYSLIEA 311
+ KI S +EA
Sbjct: 506 VTKIRGSSFVEA 517
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 67/256 (26%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K GD++ A LF++ K DVV+W+S+I G+ R G A +F N M +LV N
Sbjct: 153 HAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLF-NEMPERDLVSWN-- 209
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+I Y K G +E A +F
Sbjct: 210 -----------------------------------------VMITGYVKQGEMESARMLF 228
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA------ 178
+KDV +WNAMI+ K+AL +F+EM G+ +E+T +++L+ACA
Sbjct: 229 DEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLE 288
Query: 179 -----RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
A+++E+ + ++LG ++D+ + G + E+ + S+ +
Sbjct: 289 NGKKVHAKVMEISMGKLSTLLGN-----------ALIDMYAKCGNIKESLDVFWSIT-DK 336
Query: 234 DASVLGALLGACKIHG 249
D +++ +HG
Sbjct: 337 DVISWNSVIVGMALHG 352
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 17/252 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF + + D + +I G ++ AI ++ M + + V+ + T+ VL +C L
Sbjct: 64 LFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEM--HRHFVKGDSYTFPFVLKACTRL 121
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G VHG +LR + + L+ + K G L A +F DV W+
Sbjct: 122 F---WVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWS 178
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
++I+ A K A +F+EM E+ L +++ ++T + +E LF K
Sbjct: 179 SLIAGYARRGDLKVARKLFNEMPERDL----VSWNVMITGYVKQGEMESARMLFDEAPVK 234
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDL 253
V G VV GL +A E M PD L +LL AC G ++
Sbjct: 235 DVVSWNAMIAGYVV-----CGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLEN 289
Query: 254 CHEVGRRLLELQ 265
+V +++E+
Sbjct: 290 GKKVHAKVMEIS 301
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K G++++A LFE + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 261 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--S 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + +G+ +H YI + + + T+LID+Y K G +E
Sbjct: 319 PNDVTMLSILPACAHL---GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIE 375
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF S++ + + +WNAMI A + R A +F M++ + ++ITFV +L+AC+
Sbjct: 376 AAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 435
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 436 HSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 495
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + L++++PK+ G YV+LSNI+A RWN +R + +
Sbjct: 496 CSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDK 555
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 556 GMKKVPGCSSIE 567
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 45/306 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G + SA +F+ + +DVVSW ++I+G+ G EA+ +FK MM VR
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN--VR 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T VSV+S+CA + LG+QVH +I + ++ + ALIDLY K G +E A
Sbjct: 218 PDESTMVSVVSACA---QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 334
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEF------------- 225
+E+G H + K V H ++D+ + G + A++
Sbjct: 335 GAIEIG-RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWN 393
Query: 226 ---------------------MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263
MR EPD LL AC G +DL + R + E
Sbjct: 394 AMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKED 453
Query: 264 --LQPK 267
+ PK
Sbjct: 454 YKITPK 459
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 37/240 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 41 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLL-PNCYTFPFLLKSC 98
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------- 126
A G+Q+HG++L+ L +++ T+LI +Y + G LE A +VF
Sbjct: 99 A---KSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVV 155
Query: 127 ------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ IKDV +WNAMIS A KEAL +F EM +
Sbjct: 156 SYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN 215
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T V+V++ACA++ +ELG ++ HS + ++ ++DL + G + A
Sbjct: 216 VRPDESTMVSVVSACAQSASIELGRQV-HSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K +D A +FEN+ + +VSW ++I G+ +NG EAI F M + ++
Sbjct: 418 LISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKM--QLQNIK 475
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+ + A L L K +HG ++R + +VF+ TAL+D+Y K G + A
Sbjct: 476 PDSFTMVSVIPALAEL---SVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTA 532
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + V TWNAMI ++ K AL +F++MK++ ++ NE+TF+ VL+AC+ +
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM + + P M+HYG +VDLLGRA L+EA +F++ MP EP SV GA
Sbjct: 593 GLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGA 652
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+IH V+L + R+ +L P G +V+L+NI+A W++ +R M + GI
Sbjct: 653 MLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGI 712
Query: 301 RKIPAYSLIE 310
+K P +S++E
Sbjct: 713 QKTPGWSVVE 722
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 6/199 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K ++ A +F+ M +RD+V W +II+G+ +NG A+ + M R
Sbjct: 216 VVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGK--R 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+L + A + G L +G+ +HGY +R V + TAL+D+Y K G + A
Sbjct: 274 PDSITIVSILPAVADV---GSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTA 330
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K V +WN+MI N A+ +F +M ++ + +T + L ACA
Sbjct: 331 RLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADL 390
Query: 181 QLVELGLELFHSMLGKFEV 199
VE G H +L + E+
Sbjct: 391 GDVEQG-RFVHKLLDQLEL 408
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 14/267 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + +A L+F+ M + VVSW S+I+G+V+NG G A+ +F+ MM V
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDE--QVE 374
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
T + L +CA L G + G+ VH + + E+ V + +LI +Y K ++ A
Sbjct: 375 MTNVTVMGALHACADL---GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA 431
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+++ K + +WNAMI A N R EA+ F +M+ + ++ + T V+V+ A A
Sbjct: 432 AEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAEL 491
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ + H ++ + + + +VD+ + G + A++ M E + A
Sbjct: 492 SVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNA 549
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPK 267
++ HG +G+ LEL K
Sbjct: 550 MIDGYGTHG-------LGKAALELFEK 569
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 8/220 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K G + A +F+ + + + +++ G+ RN +A+ F M + VRP
Sbjct: 119 FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRM--RYDGVRPVVY 176
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ +L C + L GK++H ++ N +VF T ++++Y K +E A ++F
Sbjct: 177 NFTYLLKVCG---DNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMF 233
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ WN +IS A N K AL + M+E+G R + IT V++L A A +
Sbjct: 234 DRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLR 293
Query: 185 LGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+G + +SM FE + +VD+ + G + A+
Sbjct: 294 IGRSIHGYSMRAGFE--SFVNVSTALVDMYSKCGSVGTAR 331
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY+ G+++ A LF M +D++SWT++I G+ +N + EAI VF MM +
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEG--II 284
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L +GK+VH Y L+N VL V++G+AL+D+Y K G LERA
Sbjct: 285 PDEVTMSTVISACAHL---GVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ K++ WN++I LA++ +EAL MF +M+ + ++ N +TFV+V TAC A
Sbjct: 342 LLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHA 401
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++ SM+ + +V +EHYG +V L +AGL+ EA E + +M FEP+A + GA
Sbjct: 402 GLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGA 461
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH + + +L+ L+P + G Y +L +++A RW ++R M E GI
Sbjct: 462 LLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGI 521
Query: 301 RKI-PAYSLI 309
KI P S I
Sbjct: 522 EKICPGTSSI 531
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 110/367 (29%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ M + +V + ++ GFV ++ ++ M+ + V P+ TY S++
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDS--VSPSSYTYSSLV 133
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + G+ + +I + V + T LID Y G + A +VF M +
Sbjct: 134 KASSFASR-----FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPER 188
Query: 131 DVCTWNAMIS------------SLASNSREK----------------------------- 149
D W M+S SLA+ EK
Sbjct: 189 DDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMP 248
Query: 150 ---------------------EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
EA+ +F +M E+G+ +E+T V++ACA ++E+G E
Sbjct: 249 VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKE 308
Query: 189 L---------------------FHSMLGKFEVVPIMEH---------YGCVVDLLGRAGL 218
+ +S G E ++ + +++ L G
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGF 368
Query: 219 LSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275
EA + M E P+A ++ AC G VD + R +++ Y ++
Sbjct: 369 AQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMID-------DYSIV 421
Query: 276 SNI-HAG 281
SN+ H G
Sbjct: 422 SNVEHYG 428
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY+ G+++ A LF M +D++SWT++I G+ +N + EAI VF MM +
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEG--II 284
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L +GK+VH Y L+N VL V++G+AL+D+Y K G LERA
Sbjct: 285 PDEVTMSTVISACAHL---GVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ K++ WN++I LA++ +EAL MF +M+ + ++ N +TFV+V TAC A
Sbjct: 342 LLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHA 401
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++ SM+ + +V +EHYG +V L +AGL+ EA E + +M FEP+A + GA
Sbjct: 402 GLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGA 461
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH + + +L+ L+P + G Y +L +++A RW ++R M E GI
Sbjct: 462 LLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGI 521
Query: 301 RKI-PAYSLI 309
KI P S I
Sbjct: 522 EKICPGTSSI 531
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 110/367 (29%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ M + +V + ++ GFV ++ ++ M+ + V P+ TY S++
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDS--VSPSSYTYSSLV 133
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + G+ + +I + V + T LID Y G + A +VF M +
Sbjct: 134 KASSFASR-----FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPER 188
Query: 131 DVCTWNAMIS------------SLASNSREK----------------------------- 149
D W M+S SLA+ EK
Sbjct: 189 DDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMP 248
Query: 150 ---------------------EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
EA+ +F +M E+G+ +E+T V++ACA ++E+G E
Sbjct: 249 VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKE 308
Query: 189 L---------------------FHSMLGKFEVVPIMEH---------YGCVVDLLGRAGL 218
+ +S G E ++ + +++ L G
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGF 368
Query: 219 LSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275
EA + M E P+A ++ AC G VD + R +++ Y ++
Sbjct: 369 AQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMID-------DYSIV 421
Query: 276 SNI-HAG 281
SN+ H G
Sbjct: 422 SNVEHYG 428
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K G MD A +F+ M +RDV W +++ G+V+ EA+ +F M V
Sbjct: 300 MIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEAS--VV 357
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V++L++C+ L G L +G VH YI ++ +V SV +GT+LID+Y K G +E+A
Sbjct: 358 PDEITMVNLLTACSQL---GALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKA 414
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I +FK + K+ TW AMI LA++ EA+ F M E G + +EITF+ VL+AC A
Sbjct: 415 IHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHA 474
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F M K+ + M+HY C++DLLGRAG L EA++ + +MP EPDA V GA
Sbjct: 475 GLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGA 534
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+ AC++ G + L + +L+E+ P G YV+L+N++A +A +R M G+
Sbjct: 535 IFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGV 594
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 595 EKVPGCSCIE 604
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 155/313 (49%), Gaps = 39/313 (12%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G M+ A LF+ RD+VSW ++I G+VR G EA+ +F M+ +VRP+E T ++
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE---------- 118
+S C + + L LG+++HG++ + + +V + AL+D+Y K G LE
Sbjct: 234 AVSGCGQMRD---LELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIE 290
Query: 119 ---------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
A +VF M +DV WNA+++ + KEAL +F E
Sbjct: 291 HRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHE 350
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+E + +EIT V +LTAC++ +E+G+ + H + K +V + ++D+ + G
Sbjct: 351 MQEASVVPDEITMVNLLTACSQLGALEMGMWV-HRYIEKHRLVFSVALGTSLIDMYAKCG 409
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVL 275
+ +A + +P E +A A++ HG + E R ++EL +P VL
Sbjct: 410 NIEKAIHIFKEIP-EKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVL 468
Query: 276 SN-IHAGLERWNR 287
S HAGL + R
Sbjct: 469 SACCHAGLVKEGR 481
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ T+ +L +CA L G G ++LR + VF+ A G +E
Sbjct: 122 RPDHLTFPFLLKACARLREWG---YGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMED 178
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTAC 177
A R+F ++D+ +WN +I EAL +F M ++ +R +E+T +A ++ C
Sbjct: 179 ARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGC 238
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ + +ELG L H + V + ++D+ + G L AK
Sbjct: 239 GQMRDLELGRRL-HGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAK 283
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G M A LF +M + +V+WT++++G+ G + A+ F++M
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSM--QTEGFE 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ + V+VL +CA L G L LG+ ++ Y R+ ++ S + AL+++Y K GC+++A
Sbjct: 249 PDDVSIVAVLPACAQL---GTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+++F M KDV +W+ +I LA++ R EA+ +F EM+++G +R N ITFV +L+AC+
Sbjct: 306 LQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSY 365
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ GL F M + V P +EHYGCVVDLLGR+G + A + +R MP DA V G
Sbjct: 366 AGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWG 425
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ HG VD RL+EL+P G V+L+N++A RW+ RKA+
Sbjct: 426 SLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRS 485
Query: 300 IRKIPAYSLIE 310
+RK P SLIE
Sbjct: 486 MRKTPGCSLIE 496
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 57/273 (20%)
Query: 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-----TYVSVLSSCAGLVNEGGLYLG 85
++I + +N +A+ V+ M+ A TY +L +C G L LG
Sbjct: 82 AMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGG---TAALELG 138
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQVH +++R+ S + +LI++Y + G L A +VF M +DV +WN +IS+ A
Sbjct: 139 KQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARL 198
Query: 146 SREKEALVMFDEMKEK-------------------------------GLRANEITFVAVL 174
+ ++A +F+ M +K G ++++ VAVL
Sbjct: 199 GQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVL 258
Query: 175 TACARAQLVELGLELF-----HSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
ACA+ +ELG ++ H ML + +ME Y + G + +A +
Sbjct: 259 PACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMY-------AKCGCIDQALQLFDG 311
Query: 229 MPFEPD----ASVLGALLGACKIHGAVDLCHEV 257
M + D ++V+G L + H AV L E+
Sbjct: 312 MA-DKDVISWSTVIGGLAAHGRAHEAVWLFTEM 343
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VHG+++R I S ++ T ++ L + A RVF + ++ NAMI + A N
Sbjct: 32 RVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNH 91
Query: 147 REKEALVMFDEM-------KEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFE 198
+ ++A+ ++ M + + T+ +L AC +ELG ++ H + +
Sbjct: 92 QHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCD 151
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
I+++ ++++ RAG L+ A + M
Sbjct: 152 SSAIVQN--SLIEMYTRAGDLALAHKVFDEM 180
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 181/309 (58%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M+ A +F+ M RD V+W +++ G+ NG EA+ +F M + +P
Sbjct: 84 LDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAM--QMEGAKP 141
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ T V LS+C L G L LG+Q G + +E++ + +GTALID+Y K G A
Sbjct: 142 DCYTVVGALSACTRL---GALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAW 198
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M+ +D+ WNAMI L EK A + +MK+ G++ N+ TF+ +L +C
Sbjct: 199 MVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTG 258
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
LV G + FH+M + + P +EHYGC+VDL RAGLL EA + + MP +A V GAL
Sbjct: 259 LVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGAL 318
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH DL ++L+ L+P + G YV+LSNI++ RW A LR M GI
Sbjct: 319 LGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIE 378
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 379 KVPASSWVE 387
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 12/225 (5%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M VSWT++I ++ G EAI V + + +RP+ T V VL++CA + +
Sbjct: 1 MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASG--MRPDSFTAVRVLTACARVAD-- 56
Query: 81 GLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
L G+ V + E + SVF+ TA +DLY K G +E+A VF M +D W AM+
Sbjct: 57 -LETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMV 115
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
ASN +EAL +F M+ +G + + T V L+AC R ++LG + M+ EV
Sbjct: 116 GGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAV-GMVHWDEV 174
Query: 200 V--PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+ P++ ++D+ + G SEA + M E D V A++
Sbjct: 175 LGNPVLG--TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ ML+RD++ W ++I G G A + M + V+
Sbjct: 184 LIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQM--KKSGVK 241
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GLVN+G Y H Y + I M +DL+ + G LE
Sbjct: 242 LNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCM----VDLFSRAGLLE 297
Query: 119 RAIRVFKSM-VIKDVCTWNAMI 139
A ++ M ++ + W A++
Sbjct: 298 EAHQLIGDMPMLANAVVWGALL 319
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V+ G M A +FE M + + SWT+I++G+ R GC+ +A+ F+ M + +
Sbjct: 189 LISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM--QMVGIE 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VSVL CA L G L LGK +H Y + + ++ + ALI++Y K G +++
Sbjct: 247 PDEISLVSVLPDCAQL---GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQG 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV +W+ MI LA++ R +EA+ +F EM++ + + ITFV +LTACA A
Sbjct: 304 RRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHA 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ GL F SM + + P +EHYGC+V+LLG +G L +A E ++ MP +PD+ + G+
Sbjct: 364 GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGS 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ HG + + LLEL+P G YV+LSN++A L +W+ + +RK M +
Sbjct: 424 LLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM 483
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 484 KKTPGCSSIE 493
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
M+D G+ + A LLF+ + + + ++I + N + AI V+K M+GN N
Sbjct: 52 MVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGEN 111
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ P++ T+ V+ SCAGL+ LGKQVHG++ + + + +L+++Y K L
Sbjct: 112 PIFPDKFTFPFVVKSCAGLMCYD---LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSL 168
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A RVF+ M +D +WN +IS + + A +F+EM++K + ++ A+++
Sbjct: 169 DDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGY 224
Query: 178 ARAQLVELGLELFHSM 193
AR LE F M
Sbjct: 225 ARIGCYADALEFFRRM 240
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+R E +V +L C +V K++H +I++ + S F+ T ++D+ G E
Sbjct: 10 IREMEDMFVPILKDCPNIVEL------KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETE 63
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-----KEKGLRANEITFVAV 173
A +FK + + +NAMI + N A+ ++ +M E + ++ TF V
Sbjct: 64 YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFV 123
Query: 174 LTACARAQLVELGLELFHSMLGKF 197
+ +CA +LG ++ H + KF
Sbjct: 124 VKSCAGLMCYDLGKQV-HGHVFKF 146
>gi|297746423|emb|CBI16479.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 191/295 (64%), Gaps = 6/295 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M RDVVSW+S+I G+V C +A+ VF++MM + +PN T VS+LS+C L
Sbjct: 67 VFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMM--LANEKPNSVTLVSLLSACTRL 124
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+N G +G+ +H YI+ N I L V +GTA++++Y K G +E+A++VF S+ K++ +W
Sbjct: 125 LNIG---VGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWT 181
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
MIS LA +S ++A+ +F +M++ GL+ + ++F +L+AC+ LV+ G F M+
Sbjct: 182 IMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKI 241
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+ + P MEHYGC+VD+ RAG++ EA E +++MP EP++ +L + +GAC+ G V E
Sbjct: 242 YNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFDE 301
Query: 257 VGRR-LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
RR LLE++P YV+ S + + WN A DLR +M E G++K+P +S +E
Sbjct: 302 NLRRLLLEIEPDLGANYVLASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWSRVE 356
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 6/137 (4%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++P+ TY V+ +C + G G +H I++ ++G L+ +Y + +
Sbjct: 6 LKPDNFTYPFVVKACGRSLVVGA---GGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVG 62
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M ++DV +W++MI+ + + + +AL++F M + N +T V++L+AC
Sbjct: 63 LARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACT 122
Query: 179 RAQLVELGL-ELFHSML 194
R L+ +G+ E HS +
Sbjct: 123 R--LLNIGVGESIHSYI 137
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G ++ A+ +F ++ ++++ SWT +I+G + +AI +F M ++
Sbjct: 152 ILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQM--EQTGLQ 209
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ ++ +LS+C+ GLV+EG + + V Y +R ++ ++D++ + G +E
Sbjct: 210 PDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRP----TMEHYGCMVDMFARAGMIE 265
Query: 119 RAIRVFKSMVIK 130
A + K+M ++
Sbjct: 266 EAYEIIKNMPME 277
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K GDM +A +F+ M K+DVVSWT ++ G+V+ F A +F+ M + V
Sbjct: 364 LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM--KIAEVV 421
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E VS+LS+C+ L G L G+++H YI + + + +AL+D+Y K GC++ A
Sbjct: 422 AHEMALVSLLSACSQL---GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTA 478
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+F+ M K +WNAMI LASN KEA+ +FD+M E + + + IT AVL ACA
Sbjct: 479 SEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAH 538
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V+ GL F+ ++ VVP EHYGC+VDLLGRAG+L EA F++ MP EP+ + G
Sbjct: 539 VGMVDEGLRYFY-LMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWG 597
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +DL +G+ ++ + P G +V++SN+HA +W+ +R M G
Sbjct: 598 SLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRG 657
Query: 300 IRKIPAYSLIE 310
I K P +S ++
Sbjct: 658 IEKTPGHSSVQ 668
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 8/271 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A+ F+ M R SW ++I+GFV+N EA+ +F+ M+ ++ V
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEML--LHGVT 320
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+CA L G L G VH YI N I + +LI++Y K G + A
Sbjct: 321 PDGITLVSVLSACAQL---GELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF++M KDV +W M+ + A +F+EMK + A+E+ V++L+AC++
Sbjct: 378 ERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQL 437
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G E+ HS + + V + +VD+ + G + A E R M + S A
Sbjct: 438 GALDKGREI-HSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNA 495
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQ-PKHCG 270
++G +G E+ ++LELQ PK G
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDG 526
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++ A +FE M +RDVVSWTS+I+ + G + + + + M + PN+ T +S+L
Sbjct: 172 VEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEG--IIPNKVTIISLL 229
Query: 71 SSCAGL--VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
S+C V+EG + V+ + + I V + ALI +Y K GCL A+ F++M
Sbjct: 230 SACGQTQAVDEG-----RWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP 284
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
+ +WN +I N KEAL +F+EM G+ + IT V+VL+AC AQL EL
Sbjct: 285 ARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC--AQLGEL 339
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
DM A +F+ M + + W +I G+ +A+ VF+ M V P+ T +V
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREM--RRRGVSPDNYTMAAV 124
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+S+ A G +H + R VF+ + L++ YG +E A +VF+ M
Sbjct: 125 VSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYE 184
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV +W +MIS+ A + L M EM+ +G+ N++T +++L+AC + Q V+ G +
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + +GKF + ++ ++ + + G LS+A E ++MP
Sbjct: 245 Y-NQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP 284
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 191/295 (64%), Gaps = 6/295 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M RDVVSW+S+I G+V C +A+ VF++MM + +PN T VS+LS+C L
Sbjct: 157 VFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMM--LANEKPNSVTLVSLLSACTRL 214
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+N G +G+ +H YI+ N I L V +GTA++++Y K G +E+A++VF S+ K++ +W
Sbjct: 215 LNIG---VGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWT 271
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
MIS LA +S ++A+ +F +M++ GL+ + ++F +L+AC+ LV+ G F M+
Sbjct: 272 IMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKI 331
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+ + P MEHYGC+VD+ RAG++ EA E +++MP EP++ +L + +GAC+ G V E
Sbjct: 332 YNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFDE 391
Query: 257 VGRR-LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
RR LLE++P YV+ S + + WN A DLR +M E G++K+P +S +E
Sbjct: 392 NLRRLLLEIEPDLGANYVLASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWSRVE 446
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 14 AILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
A L+F+ + ++ + +W SII + ++ EA+ +F M V L +P+ TY V+ +
Sbjct: 52 ARLVFDRLPIRAPIFAWNSIIRAYTKSSVPIEAVKLFSQMQ-RVGL-KPDNFTYPFVVKA 109
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
C + G G +H I++ ++G L+ +Y + + A RVF M ++DV
Sbjct: 110 CGRSLVVGA---GGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDV 166
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL-ELFH 191
+W++MI+ + + + +AL++F M + N +T V++L+AC R L+ +G+ E H
Sbjct: 167 VSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTR--LLNIGVGESIH 224
Query: 192 SML 194
S +
Sbjct: 225 SYI 227
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G ++ A+ +F ++ ++++ SWT +I+G + +AI +F M ++
Sbjct: 242 ILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQM--EQTGLQ 299
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ ++ +LS+C+ GLV+EG + + V Y +R ++ ++D++ + G +E
Sbjct: 300 PDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRP----TMEHYGCMVDMFARAGMIE 355
Query: 119 RAIRVFKSMVIK 130
A + K+M ++
Sbjct: 356 EAYEIIKNMPME 367
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 200/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY G + A LF+ M KR++VSW+++I G+++ GC+ +A+ +FK M V V+
Sbjct: 239 MLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEM--QVAKVK 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E ++LS+CA L G L G+ +H YI ++ I + + TALID+Y K G ++ A
Sbjct: 297 MDEVIVTTLLSACARL---GALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMA 353
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ K V W++MI LA +S ++A+ +F +M E G+ +EIT++ +L AC +
Sbjct: 354 WKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHS 413
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++GL++F+ M+ + P M+HYGC+VDLLGRAGLL +A + +MP + D ++ A
Sbjct: 414 GLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRA 473
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H V+L +VGR L++++P++ YV+ SN++A + RW+ + LR+ M G+
Sbjct: 474 LLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGM 533
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 534 QKNPGCSSIE 543
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 17/249 (6%)
Query: 9 GDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
G ++ A LF+ + + R+ +T++I + G EA + M+ + V PN+ T+
Sbjct: 80 GSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFT 139
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI-RVFKS 126
V S+C+ G++ GKQ H +++ V +L+D YGKVG + + RVF
Sbjct: 140 YVFSACSKF---NGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDK 196
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ DV +WN +I+ + EA +FDEM E+ + +++ +L A A +
Sbjct: 197 IEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDV----VSWTIMLVGYADAGFLSEA 252
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP---DASVLGALLG 243
LF M + V + ++ + G S+A E + M D ++ LL
Sbjct: 253 SCLFDEMPKRNLV-----SWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLS 307
Query: 244 ACKIHGAVD 252
AC GA+D
Sbjct: 308 ACARLGALD 316
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 122/303 (40%), Gaps = 55/303 (18%)
Query: 1 MIDGYVKNGDMDSAIL-LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
++D Y K G++ + +F+ + DVVSW +ING+V++G EA +F M
Sbjct: 176 LLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEM------- 228
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P V T ++ Y G L
Sbjct: 229 -PER------------------------------------DVVSWTIMLVGYADAGFLSE 251
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M +++ +W+A+I +AL +F EM+ ++ +E+ +L+ACAR
Sbjct: 252 ASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACAR 311
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ G L H + K + ++D+ + G + A + + + V
Sbjct: 312 LGALDQGRWL-HMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETG-DKKVFVWS 369
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN------IHAGLERWNRATDL 291
+++G +H + E+ +++E ++P +L+ + GL+ +NR +
Sbjct: 370 SMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVEN 429
Query: 292 RKA 294
+K
Sbjct: 430 QKP 432
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++NG + +A +F+ M + D VSWT++I+G V+NG EAI F M+ ++ V
Sbjct: 143 MITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAML--LDGVE 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+ +S+CA + G L LG VH + R + ++ + +LID+Y + G +E A
Sbjct: 201 PDYVTLVAAISACAEV---GALGLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFA 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF SM + V +WN+MI A+N R +A+ F+ M+ KG R + +TF VLTAC+ A
Sbjct: 258 RQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHA 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL + +M + + MEHYGCVVDLLGRAG L EA + +MP P+ VLGA
Sbjct: 318 GLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGA 377
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG VD+ ++ + LLE P YV+LSNI+A +W+ A +R M G+
Sbjct: 378 LLAGCRMHGDVDMAEQLMQHLLEQDPGGDSNYVLLSNIYAATGKWDGAGKVRGLMKARGV 437
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 438 KKRPGRSAVE 447
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 32/236 (13%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE----- 79
DVVSWT+ I R G M+ + PN+ T ++VLS+CAG +
Sbjct: 30 DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARP 89
Query: 80 -----------------------GGLYLGKQVHGYILR---NEIVLSVFMGTALIDLYGK 113
YL ++ L+ + V S+ +I +
Sbjct: 90 LALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMR 149
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G + A VF M D +W A+I N R EA+ F M G+ + +T VA
Sbjct: 150 NGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAA 209
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ACA + LG+ H ++ + + + ++D+ R G + A++ SM
Sbjct: 210 ISACAEVGALGLGM-WVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSM 264
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA +F + DV+SW +II+G+ +NG EAI ++ N+M + N+
Sbjct: 312 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY-NIMEEEGEIAANQG 370
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVL +C+ G L G ++HG +L+N + L VF+ T+L D+YGK G LE A+ +F
Sbjct: 371 TWVSVLPACS---QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 427
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + WN +I+ + ++A+++F EM ++G++ + ITFV +L+AC+ + LV+
Sbjct: 428 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 487
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F M + + P ++HYGC+VD+ GRAG L A +F++SM +PDAS+ GALL A
Sbjct: 488 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 547
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG VDL L E++P+H G +V+LSN++A +W ++R G+RK P
Sbjct: 548 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTP 607
Query: 305 AYSLIE 310
+S +E
Sbjct: 608 GWSSME 613
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 142/273 (52%), Gaps = 16/273 (5%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M RD++SW SII + N AI +F+ M ++ ++P+ T +S+ S + L
Sbjct: 222 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQPDCLTLISLASILSQL 279
Query: 77 VNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
G + + V G+ LR L + +G A++ +Y K+G ++ A VF + DV +W
Sbjct: 280 ---GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 336
Query: 136 NAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSML 194
N +IS A N EA+ M++ M+E+G + AN+ T+V+VL AC++A + G++L +L
Sbjct: 337 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 396
Query: 195 --GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
G + V ++ + D+ G+ G L +A +P ++ L+ HG +
Sbjct: 397 KNGLYLDVFVVT---SLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGE 452
Query: 253 LCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
+ + +L+ ++P H +LS H+GL
Sbjct: 453 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 485
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
S + F+++ RDV +W +I+G+ R G E I F M + L P+ T+ SVL +
Sbjct: 37 SKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT-PDYRTFPSVLKA 95
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
C +++ G ++H L+ + V++ +LI LY + + A +F M ++D+
Sbjct: 96 CRTVID------GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDM 149
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARA 180
+WNAMIS + KEAL + GLRA + +T V++L+AC A
Sbjct: 150 GSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEA 193
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G ++ A+ LF + + + V W ++I +G +A+ +FK M+ V+
Sbjct: 410 LADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG--VK 467
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T+V++LS+C +GLV+EG Y I S+ ++D+YG+ G LE
Sbjct: 468 PDHITFVTLLSACSHSGLVDEGQWCFEMMQTDY----GITPSLKHYGCMVDMYGRAGQLE 523
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A++ KSM ++ D W A++S+
Sbjct: 524 TALKFIKSMSLQPDASIWGALLSA 547
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + + +A +LF+ M RD+ SW ++I+G+ ++G EA+ + +
Sbjct: 124 LIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----- 178
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VS+LS+C G G +H Y +++ + + L
Sbjct: 179 -DSVTVVSLLSAC---TEAGDFNRGVTIHSYSIKHGL---------------ESELLRDC 219
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+VF M ++D+ +WN++I + N + A+ +F EM+ ++ + +T +++ +
Sbjct: 220 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLAS 274
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 183/294 (62%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+NM +RD +SW+++I G+ +NGC EA+ F M + R N +++ LS+C+
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE--RLNRSSFTCALSTCS-- 191
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
N L LG+Q+H +++ ++G AL+ +Y K G ++ A F+ ++ KDV +WN
Sbjct: 192 -NIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWN 250
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
MI A + +EAL +F+ MK G+R ++ T V+VL AC+ A LV+ G E F+SM
Sbjct: 251 TMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRD 310
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+ + + HY C+VDLLGRAG L EA+ M++MPFEPDA+ GALLGA +IHG +L +
Sbjct: 311 YGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 370
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ + E++P + G Y++LS ++A RW+ A +R M G++K+P YS +E
Sbjct: 371 AAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLE 424
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 93/159 (58%), Gaps = 13/159 (8%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +D A F+ +L++DVVSW ++I+G+ R+G EA+ VF+ M +RP++A
Sbjct: 225 YCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELM--KTTGIRPDDA 282
Query: 65 TYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
T VSVL++C AGLV++G Y Y + ++V T ++DL G+ G LE A
Sbjct: 283 TMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHY----TCMVDLLGRAGQLEEAQN 338
Query: 123 VFKSMVIK-DVCTWNAMI--SSLASNSR--EKEALVMFD 156
+ K+M + D TW A++ S + N+ EK A ++F+
Sbjct: 339 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFE 377
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 68/309 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY++N D A LF+ M +RD+ SW ++ G+VRN A +F+ M
Sbjct: 1 MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERM------PE 54
Query: 61 PNEATYVSVLSSCA--GLVNEG----------------GLYLGKQVHGYILRNEIVLSVF 102
+ ++ ++LS A G V+E GL +G I + +
Sbjct: 55 RDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESK 114
Query: 103 MGTALIDLYGKVGCLERAIR-VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
M L+ +G R R +F +M +D +W+AMI+ + N +EAL F EM+
Sbjct: 115 MDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRD 174
Query: 162 GLRANEITFVAVLTACARAQLVELGLEL-------------------------------- 189
R N +F L+ C+ +ELG +L
Sbjct: 175 CERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEA 234
Query: 190 ---FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRSMPFEPDASVLGALLG 243
F +L K +VV + ++ R G EA E M++ PD + + ++L
Sbjct: 235 RDAFQEILEK-DVVS----WNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLA 289
Query: 244 ACKIHGAVD 252
AC G VD
Sbjct: 290 ACSHAGLVD 298
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K GDM +A +F+ M K+DVVSWT ++ G+V+ F A +F+ M + V
Sbjct: 364 LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM--KIAEVV 421
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E VS+LS+C+ L G L G+++H YI + + + +AL+D+Y K GC++ A
Sbjct: 422 AHEMALVSLLSACSQL---GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTA 478
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+F+ M K +WNAMI LASN KEA+ +FD+M E + + + IT AVL ACA
Sbjct: 479 SEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAH 538
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V+ GL F+ ++ VVP EHYGC+VDLLGRAG+L EA F++ MP EP+ + G
Sbjct: 539 VGMVDEGLRYFY-LMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWG 597
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +DL +G+ ++ + P G +V++SN+HA +W+ +R M G
Sbjct: 598 SLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRG 657
Query: 300 IRKIPAYSLIE 310
I K P +S ++
Sbjct: 658 IEKTPGHSSVQ 668
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 8/271 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A+ F+ M R SW ++I+GFV+N EA+ +F+ M+ ++ V
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEML--LHGVT 320
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+CA L G L G VH YI N I + +LI++Y K G + A
Sbjct: 321 PDGITLVSVLSACAQL---GELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF++M KDV +W M+ + A +F+EMK + A+E+ V++L+AC++
Sbjct: 378 ERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQL 437
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G E+ HS + + V + +VD+ + G + A E R M + S A
Sbjct: 438 GALDKGREI-HSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNA 495
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQ-PKHCG 270
++G +G E+ ++LELQ PK G
Sbjct: 496 MIGGLASNGYGKEAVELFDQMLELQDPKPDG 526
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+FE M +RDVVSWTS+I+ + G + + + + M + PN+ T +S+LS+C
Sbjct: 178 VFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEM--QAEGIIPNKVTIISLLSACGQT 235
Query: 77 --VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
V+EG + V+ + + I V + ALI +Y K GCL A+ F++M + +
Sbjct: 236 QAVDEG-----RWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS 290
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
WN +I N KEAL +F+EM G+ + IT V+VL+AC AQL EL
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC--AQLGEL 339
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
DM A +F+ M + + W +I G+ +A+ VF+ M V P+ T +V
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREM--RRRGVSPDNYTMAAV 124
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+S+ A G +H + R VF+ + L++ YG ++ A +VF+ M
Sbjct: 125 VSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYE 184
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV +W +MIS+ A + L M EM+ +G+ N++T +++L+AC + Q V+ G +
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + +GKF + ++ ++ + + G LS+A E ++MP
Sbjct: 245 Y-NQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMP 284
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 190/308 (61%), Gaps = 7/308 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD++ A LFE + +DVVSW ++I G+ + EA+ +F+ M+ + PN+
Sbjct: 261 YSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNDV 318
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLERAIR 122
T +SVL +CA L G + +G+ +H YI + + + T+LID+Y K G +E A +
Sbjct: 319 TMLSVLPACAHL---GAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQ 375
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
VF SM+ K + +WNAMI A + R A +F M++ G+ ++IT V +L+AC+ + L
Sbjct: 376 VFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGL 435
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
++LG +F S+ + + P +EHYGC++DLLG AGL EA+E + MP EPD + +LL
Sbjct: 436 LDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLL 495
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
ACK+HG ++L ++L+E++P++ G YV+LSNI+A RW +R+ + G++K
Sbjct: 496 KACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKK 555
Query: 303 IPAYSLIE 310
+P S IE
Sbjct: 556 VPGCSSIE 563
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 57/328 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY GD+ SA +F+ + +RDVVSW ++I G+V N + EA+ +FK MM VR
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN--VR 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLER 119
P+E T VSVLS+CA G + LG+++H + + S+ + A I LY K G +E
Sbjct: 213 PDEGTLVSVLSACA---QSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F+ + KDV +WN +I + KEAL++F EM G N++T ++VL ACA
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 329
Query: 180 AQLVELGL-------------------------------------ELFHSMLGKFEVVPI 202
+++G ++F+SM+ K
Sbjct: 330 LGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK-----S 384
Query: 203 MEHYGCVV---DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
+ + ++ + GRA + MR EPD L LL AC G +DL + +
Sbjct: 385 LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444
Query: 260 RLLE---LQPK--HCGRYVVLSNIHAGL 282
+ + + PK H G + L HAGL
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLG-HAGL 471
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 36/207 (17%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +FE + +++ W +++ G + + ++ M+ ++ PN T+ +L SC
Sbjct: 36 AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHV--PNAYTFPFLLKSC 93
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE--------------- 118
A G+Q+H +++ L + T+LI +Y + G LE
Sbjct: 94 A---KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVV 150
Query: 119 ----------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
A +VF + +DV +WNAMI+ N +EAL +F EM
Sbjct: 151 SCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN 210
Query: 163 LRANEITFVAVLTACARAQLVELGLEL 189
+R +E T V+VL+ACA++ +ELG E+
Sbjct: 211 VRPDEGTLVSVLSACAQSGSIELGREI 237
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+++A +F +M+ + + SW ++I GF +G A +F M N +
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNG--IE 417
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
P++ T V +LS+C+ + G L LG+ + + ++ I + +IDL G G +
Sbjct: 418 PDDITLVGLLSACS---HSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKE 474
Query: 120 AIRVFKSMVIK-DVCTWNAMISS 141
A + M ++ D W +++ +
Sbjct: 475 AEEIIHMMPMEPDGVIWCSLLKA 497
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A+ VF++ ++ WN M+ LAS+S L M+ M G N TF +L +
Sbjct: 33 LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
CA+++ E G ++ H+ + K + ++ + R G L +A++
Sbjct: 93 CAKSKTFEEGRQI-HAQVMKLGCELDRYAHTSLISMYARNGRLEDARK 139
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 192/320 (60%), Gaps = 13/320 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
++ GY++ GD++ +++F+ M+ RDV +W ++I+G +NG F E I +F+ M+ L
Sbjct: 173 LVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGE 232
Query: 59 ------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+PN+ T V VLS+C + G L LGK +HGY+ R+ V+ F+ AL+D+YG
Sbjct: 233 GGFCKGNKPNQVTVVCVLSACG---HGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYG 289
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE--KGLRANEITF 170
K G LE A +VF+ K + +WN+MI+ A + + ++A+ F++M E G+R +E+TF
Sbjct: 290 KCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTF 349
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ +L AC LVE G F M+ ++ + P + HYGC++DLLGRAG EA + ++ M
Sbjct: 350 IGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMS 409
Query: 231 FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD 290
EPD V G+LL CK+HG DL ++L+E+ P + G +L+NI+ L +W+ +
Sbjct: 410 MEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRN 469
Query: 291 LRKAMVEAGIRKIPAYSLIE 310
+ + + KIP S IE
Sbjct: 470 VWSKLKQQKSYKIPGCSWIE 489
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 108/255 (42%), Gaps = 49/255 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++ A +F ++ ++ +T+II F +FK M+ N N +RPN Y V
Sbjct: 54 NLHYAHQIFNHIHSPNIYLFTAIITAFSSQQ--HTTFKLFKTML-NSN-IRPNNFIYPHV 109
Query: 70 LSSCA---------------GLVNE---------------GGLYLGKQVHGYILRNEIVL 99
L S G +N GGL +V + IV
Sbjct: 110 LKSVKERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIV- 168
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
VF T L+ Y +VG +E+ + VF MV +DV WNA+IS N E + +F EM
Sbjct: 169 -VF--TVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMV 225
Query: 160 E----------KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
KG + N++T V VL+AC +++LG + H + + V +
Sbjct: 226 FAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLG-KWIHGYVYRHGFVVDSFVSNAL 284
Query: 210 VDLLGRAGLLSEAKE 224
VD+ G+ G L A++
Sbjct: 285 VDMYGKCGSLELARK 299
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY+ G+++ A LF M +D++SWT++I G+ +N + EAI VF MM +
Sbjct: 972 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEG--II 1029
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L +GK+VH Y L+N VL V++G+AL+D+Y K G LERA
Sbjct: 1030 PDEVTMSTVISACAHL---GVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 1086
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ K++ WN++I LA++ +EAL MF +M+ + ++ N +TFV+V TAC A
Sbjct: 1087 LLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHA 1146
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++ SM+ + +V +EHYG +V L +AGL+ EA E + +M FEP+A + GA
Sbjct: 1147 GLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGA 1206
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH + + +L+ L+P + G Y +L +++A RW ++R M E GI
Sbjct: 1207 LLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGI 1266
Query: 301 RKI-PAYSLI 309
KI P S I
Sbjct: 1267 EKICPGTSSI 1276
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 21/257 (8%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ M + +V + ++ GFV ++ ++ M+ + V P+ TY S++
Sbjct: 821 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDS--VSPSSYTYSSLV 878
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + G+ + +I + V + T LID Y G + A +VF M +
Sbjct: 879 KASSFASR-----FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPER 933
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG-LEL 189
D W M+S+ A + ++M EK NE T + C + LG LE
Sbjct: 934 DDIAWTTMVSAYRRVLDMDSANSLANQMSEK----NEAT-----SNCLINGYMGLGNLEQ 984
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACK 246
S+ + V I+ + ++ + EA M E PD + ++ AC
Sbjct: 985 AESLFNQMPVKDIIS-WTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACA 1043
Query: 247 IHGAVDLCHEVGRRLLE 263
G +++ EV L+
Sbjct: 1044 HLGVLEIGKEVHMYTLQ 1060
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG ++NG++ A+ LF M +R+ +SW +I+G+ +NG EA+ +F+ M +
Sbjct: 164 MIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREM--QMLDQE 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN A VSVLS+C+ L G L G VH YI + + + + ALID+Y K G ++ A
Sbjct: 222 PNSAILVSVLSACSQL---GALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLA 278
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ F + +DV + A IS LA N +EAL +F++MK +G+ + ++++AVL AC+ A
Sbjct: 279 MQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHA 338
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G F SM + P ++HY C+VDLLGRAGLL EA++F+ SMP +PD + GA
Sbjct: 339 GWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGA 398
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+++G ++ VG L+E H GRY++LSNI+A + A +RK M +
Sbjct: 399 LLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKV 458
Query: 301 RKIPAYSLIE 310
++P SLIE
Sbjct: 459 DRVPGCSLIE 468
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 50/293 (17%)
Query: 8 NGDMDSAILLF-ENMLKRDVVSWTSIINGFVR---NGCFGEAICVFKNMMGNVNLVRPNE 63
+GD+D A+LL V + + I GF R G ++ +F M G ++L PN
Sbjct: 35 SGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRM-GVLSLA-PNN 92
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY---GKV------ 114
T+ + C+ V LG+Q HG +++N + VF+ ++I Y G++
Sbjct: 93 FTFTFLFQGCSNCV---AFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWV 149
Query: 115 -----------------GCLE-----RAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
GC+ A+ +F M ++ +WN MIS A N + KEAL
Sbjct: 150 FDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEAL 209
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVV 210
+F EM+ N V+VL+AC++ ++ G + H +GK V I+ ++
Sbjct: 210 ALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWV-HCYIGKKCVRVDSILS--AALI 266
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
D+ + G + A + S + D S A + ++G C E +L E
Sbjct: 267 DMYAKCGSIDLAMQAF-STSRKRDVSAYTAAISGLAMNG----CSEEALQLFE 314
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +F + ++D + W S+I +NG GEAI +F+ M + R
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM--GMEGTR 459
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + LS+CA L L+ GK++HG +++ + ++ ++LID+Y K G L +
Sbjct: 460 YDCVSISGALSACANLP---ALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFS 516
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M K+ +WN++IS+ ++ KE L +F EM G++ + +TF+ +++AC A
Sbjct: 517 RRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ +H M ++ + MEHY CV D+ GRAG L EA E + SMPF PDA V G
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGT 636
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG V+L + L +L P + G YV+L+N+ AG +W + +R M E G+
Sbjct: 637 LLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGV 696
Query: 301 RKIPAYSLIE 310
RK+P YS IE
Sbjct: 697 RKVPGYSWIE 706
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 10/284 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D++ A D V T++I+G+V NG EA+ F+ ++ ++
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE--RMK 358
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S+ + AGL L LGK++HG I++ ++ +G+A++D+Y K G L+ A
Sbjct: 359 PTSVTFSSIFPAFAGL---AALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLA 415
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KD WN+MI+S + N R EA+ +F +M +G R + ++ L+ACA
Sbjct: 416 CRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H ++ K + + ++D+ + G L+ ++ M E + +
Sbjct: 476 PALHYGKEI-HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNS 533
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAG 281
++ A HG + C + +L +QP H ++S HAG
Sbjct: 534 IISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAG 577
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +NG + A LF+N+ ++D V W ++NG+V+NG G AI +F M + ++
Sbjct: 99 LIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSE--IK 156
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ VLS CA +E L LG Q+HG + + L + L+ +Y K CL+ A
Sbjct: 157 PNSVTFACVLSVCA---SEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAA 213
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
++F ++ D+ +WN +IS N EA +F M G++ + ITF + L
Sbjct: 214 RKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 11/258 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + +A LF+ + + D+VSW II+G+V+NG GEA +F+ M+ ++P+
Sbjct: 204 YSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAG--IKPDSI 261
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S L L++ L K++HGYI+R+ +VL VF+ +ALID+Y K +E A +
Sbjct: 262 TFASFLPCVNELLS---LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNL 318
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
D MIS N + KEAL F + ++ ++ +TF ++ A A +
Sbjct: 319 CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG EL H + K ++ ++D+ + G L A + E DA +++ +
Sbjct: 379 LGKEL-HGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITS 436
Query: 245 CKIHG----AVDLCHEVG 258
C +G A++L ++G
Sbjct: 437 CSQNGRPGEAINLFRQMG 454
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 5/185 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV+ G + A LF + +W +I GF G F A+ + M+G V P++
Sbjct: 2 YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG--VSPDKY 59
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V+ +C GL + + +GK VH + + VF+G++LI LY + G L A +F
Sbjct: 60 TFPYVVKACCGLKS---VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
++ KD WN M++ N A+ +F EM+ ++ N +TF VL+ CA +++
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176
Query: 185 LGLEL 189
LG +L
Sbjct: 177 LGTQL 181
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 192/303 (63%), Gaps = 5/303 (1%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G M+ A LF+ M K D V+WT++I G+ R G A+ +F+ M + V P++ T V
Sbjct: 158 SGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM--QIAGVCPDDVTMV 215
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
SVLS+C L G L LGK + YI + ++ +V + AL+D++ K G +++A+ +F++M
Sbjct: 216 SVLSACTDL---GALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNM 272
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ + +W ++I LA + R EA+ +F+EMK G+ +I F+ +L+AC+ + LVE G
Sbjct: 273 SKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGR 332
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ F M +F +VP +EHYGC+VDLL RAGL++EA EF+ MP EP+ + L+ AC++
Sbjct: 333 QYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRV 392
Query: 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYS 307
HG + L + ++L+ +P H YV+LSNI+ + W + + +R AM + GI+K+P +
Sbjct: 393 HGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGST 452
Query: 308 LIE 310
+IE
Sbjct: 453 MIE 455
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
S + E+ D +++II + + + N+M + PN+ + VL +
Sbjct: 60 SLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYG-ISPNKYAFPFVLKA 118
Query: 73 CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV-GCLERAIRVFKSMVIKD 131
CAGL + L LGK VHG +++ +F+ ++ +Y G +E A ++F M D
Sbjct: 119 CAGLRD---LNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLD 175
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
TW AMI A + A+ +F +M+ G+ +++T V+VL+AC +ELG +
Sbjct: 176 PVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIE 234
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
S + K V+ +E +VD+ + G + +A R+M
Sbjct: 235 SYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNM 272
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D + K GD+D A+ LF NM KR +VSWTS+I G +G EA+ +F+ M + +
Sbjct: 252 LVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMV-- 309
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + ++ +LS+C +GLV G Y + + IV + ++DL + G +
Sbjct: 310 PEDIAFIGLLSACSHSGLVERGRQYFSEMTRQF----GIVPKIEHYGCMVDLLSRAGLVT 365
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A+ + M I+ + W +IS+
Sbjct: 366 EALEFVERMPIEPNPIIWRTLISA 389
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD+A L F+ M + VSW ++I+G R G A+ + M +
Sbjct: 230 LVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN--FQ 287
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P TY SV S+CA + G L GK VH +++++ + L F+G L+D+Y K G ++ A
Sbjct: 288 PTHFTYSSVFSACASI---GALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +V DV +WN M++ A + KE L F++M G+ NEI+F+ VLTAC+ +
Sbjct: 345 KRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F ++ K++V P + HY VDLLGR GLL A+ F+R MP EP A+V GA
Sbjct: 405 GLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGA 463
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H ++L R EL P G ++LSNI+A RW +RK M E+G+
Sbjct: 464 LLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGV 523
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 524 KKQPACSWVE 533
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G +D A +F+ M +D+V+WT++I GF +N +A+ +F M+ + L +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQML-RLGL-Q 186
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T S+L + +E GL G Q+H + L+ SV++G+AL+D+Y + G ++ A
Sbjct: 187 PNHFTLSSLLKASG---SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAA 243
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M K +WNA+IS A + AL + +M+ K + T+ +V +ACA
Sbjct: 244 QLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASI 303
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + H+ + K + I ++D+ +AG + +AK + +PD
Sbjct: 304 GALEQG-KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNT 361
Query: 241 LLGACKIHG 249
+L C HG
Sbjct: 362 MLTGCAQHG 370
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 184/313 (58%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY NG +D A LFE RD+V WT++ING+V+ F EA+ +F+ M + +R
Sbjct: 287 MVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKM--QIQRLR 344
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V++L CA G L GK +HGYI N I L +GTAL+D+Y K GC+E+A
Sbjct: 345 PDNFILVTLLKGCA---QTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKA 401
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M +D +W ++I LA N +AL F +M+E G R ++ITF+ VLTAC
Sbjct: 402 LEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHG 461
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG- 239
LVE G F SM +++ P EHY C++DLL RAGLL EA+ + +P E V+
Sbjct: 462 GLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPL 521
Query: 240 --ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LL AC+ +G + + VGRRL ++ K + +L++++A RW T +R+ M E
Sbjct: 522 YCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKE 581
Query: 298 AGIRKIPAYSLIE 310
GIRK P S IE
Sbjct: 582 LGIRKFPGCSSIE 594
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 148/335 (44%), Gaps = 90/335 (26%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G M+ A +F+ + +RDVVSW +I+ +V + F +AI VF+ M NL + +EAT VS
Sbjct: 163 GKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNL-KADEATVVS 221
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
LS+C+ L N+ +G+++H Y+ E+ ++ +G AL+D+Y K GC+++A +F M
Sbjct: 222 TLSACSVLRNQE---VGEEIHRYV-DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMG 277
Query: 129 IKDVCTWNAMISSLASN-----SRE--------------------------KEALVMFDE 157
K+V W +M+S ASN +RE EAL +F +
Sbjct: 278 NKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRK 337
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELG------------------------------- 186
M+ + LR + V +L CA+ +E G
Sbjct: 338 MQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGC 397
Query: 187 ----LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLG 239
LE+F+ M + YG V+ G+ S+A +F M F PD
Sbjct: 398 VEKALEVFYEMKERDTASWTSVIYGLAVN-----GMTSKALDFFSQMEEAGFRPDDITFI 452
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE-------LQPK 267
+L AC G V E GRR + +QPK
Sbjct: 453 GVLTACNHGGLV----EEGRRYFDSMTKTYKIQPK 483
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 117/243 (48%), Gaps = 26/243 (10%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----- 58
G N D + I+LF R + + + GFV++ C + K + + N
Sbjct: 43 GLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLV 102
Query: 59 ---------VRPNEATYVSVLSS--CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107
+ P+ T V + C G V EG ++VHGY++++ V ++
Sbjct: 103 LFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEG-----EKVHGYVVKSGFDACVC--NSV 155
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRAN 166
+ +YG +G +E A +VF + +DV +WN +ISS + + ++A+ +F M +E L+A+
Sbjct: 156 MGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKAD 215
Query: 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
E T V+ L+AC+ + E+G E+ + + E+ + + ++D+ + G + +A+
Sbjct: 216 EATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGN--ALLDMYCKCGCVDKARAIF 273
Query: 227 RSM 229
M
Sbjct: 274 DEM 276
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A L+F M +D++SW +II G+ +N EA+ +F N++
Sbjct: 287 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFS 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VL +CA L G+++HGYI+RN + +L+D+Y K G L A
Sbjct: 346 PDERTVACVLPACASL---SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 402
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + KEA+ +F++M++ G+ A+EI+FV++L AC+ +
Sbjct: 403 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 462
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + ++ P +EHY C+VD+L R G L +A F+ +MP PDA++ GA
Sbjct: 463 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 522
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L +V ++ EL+P++ G YV+++NI+A E+W + LRK + + G+
Sbjct: 523 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 582
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 583 RKNPGCSWIE 592
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+DSA +F M R VVS+TS+I G+ R G GEA+ +F+ M +
Sbjct: 186 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM--EEEGIS 243
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T +VL+ CA L++EG K+VH +I N++ +F+ AL+D+Y K G ++
Sbjct: 244 PDVYTVTAVLNCCARYRLLDEG-----KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD-EMKEKGLRANEITFVAVLTAC 177
A VF M +KD+ +WN +I + N EAL +F+ ++EK +E T VL AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358
Query: 178 ARAQLVELGLEL 189
A + G E+
Sbjct: 359 ASLSAFDKGREI 370
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+KN +DSA +F+ M +RDV+SW SIING+V NG + + VF M+ V+ + + A
Sbjct: 89 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQML--VSGIEIDLA 146
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSV + CA + + LG+ VH ++ L+D+Y K G L+ A VF
Sbjct: 147 TIVSVFAGCA---DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 203
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ M + V ++ +MI+ A EA+ +F+EM+E+G+ + T AVL CAR +L++
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 263
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
G + H + + ++ + ++D+ + G + EA+
Sbjct: 264 EGKRV-HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 301
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 6/213 (2%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + + W ++N ++G F +I +FK MM + V + T+ V S + L
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG--VEMDSYTFSCVSKSFSSLR 58
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
+ G G+Q+HG+IL++ +G +L+ Y K ++ A +VF M +DV +WN+
Sbjct: 59 SVHG---GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 115
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
+I+ SN ++ L +F +M G+ + T V+V CA ++L+ LG + HS+ K
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKA 174
Query: 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++D+ + G L AK R M
Sbjct: 175 CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 207
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GD+++A LF+ M +++ V+WTS+I G+ R+ +A+ +F MM +N +R
Sbjct: 255 MVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMA-LN-IR 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ S L + A + L GKQ+HGY++R I + + ++LID+Y K GCLE
Sbjct: 313 PDQFTFSSCLCASASI---ASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVG 369
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF M K DV WN +ISSLA + R +EA+ MFD+M G++ + IT + +L AC+
Sbjct: 370 RLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSH 429
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ GL L+ S+ V+P EHY C++DLLGRAG + MP +P+ +
Sbjct: 430 SGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWN 489
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C++HG ++ EV +++EL P+ YV+LS+IHA + RW ++R+ M E
Sbjct: 490 ALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERH 549
Query: 300 IRKIPAYSLIE 310
+RK A S IE
Sbjct: 550 VRKDRAISWIE 560
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 21/269 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY K G + A LF+ M ++DVVSW +++ + ++G +A+ ++ + +G
Sbjct: 123 MLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLG---- 178
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ NE ++ +L+ C V L L KQ HG +L + ++ + ++++D Y K +
Sbjct: 179 IGYNEYSFAGLLNIC---VKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMG 235
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F M+I+DV W M+S A + A +FD M EK N + + +++ A
Sbjct: 236 DARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEK----NPVAWTSLIAGYA 291
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPDA 235
R L LELF M+ + P + + L+ K+ ++ P+
Sbjct: 292 RHDLGHKALELFTKMMA-LNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNT 350
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLEL 264
V+ +L+ G C EVGR + +L
Sbjct: 351 IVVSSLIDMYSKCG----CLEVGRLVFDL 375
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVG 115
N +R T +L CA N L LGK VH ++ + + F+ LI++Y K G
Sbjct: 44 NGIRLPSKTLAYLLQQCA---NTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCG 100
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
A +VF M +++ +WN M+S A + K A +FD+M EK + +++ ++
Sbjct: 101 DYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDV----VSWNTMVI 156
Query: 176 ACARAQLVELGLELFHSM 193
A A++ L + +
Sbjct: 157 AYAKSGFCNDALRFYREL 174
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+++ ++ Y K+G ++ A ++F M KDV +WN M+ + A + +AL + E++
Sbjct: 116 NLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELR 175
Query: 160 EKGLRANEITFVAVLTACARAQLVELG 186
G+ NE +F +L C + + +EL
Sbjct: 176 RLGIGYNEYSFAGLLNICVKVKELELS 202
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DGY+K GDM+ A +F ++ RDVV+WT++I G+ ++G +GEAI +F++M+G R
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ--R 410
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++LS + L + GKQ+HG +++ + SV + ALI +Y K G + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSH---GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R F + +D +W +MI +LA + +EAL +F+ M +GLR + IT+V V +AC
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G + F M +++P + HY C+VDL GRAGLL EA+EF+ MP EPD G
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +DL RLL L+P++ G Y L+N+++ +W A +RK+M +
Sbjct: 588 SLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647
Query: 300 IRKIPAYSLIE 310
++K +S IE
Sbjct: 648 VKKEQGFSWIE 658
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 41/318 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +++ G MD A+ FE M +RD+V+W S+I+GF + G A+ +F M+ + +L+
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRD-SLLS 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLSVFMG----------- 104
P+ T SVLS+CA L L +GKQ+H +I+ + IVL+ +
Sbjct: 277 PDRFTLASVLSACANLEK---LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 105 -----------------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
TAL+D Y K+G + +A +F S+ +DV W AMI +
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ +F M G R N T A+L+ + + G ++ S + E+ +
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV-SVSN 452
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL--ELQ 265
++ + +AG ++ A + E D +++ A HG + E+ +L L+
Sbjct: 453 ALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512
Query: 266 PKHCGRYVVLSN-IHAGL 282
P H V S HAGL
Sbjct: 513 PDHITYVGVFSACTHAGL 530
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 16/266 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K GDMDS F+ + +RD VSWT++I G+ G + +AI V +M+ +
Sbjct: 86 VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG--IE 143
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T +VL+S A + GK+VH +I++ + +V + +L+++Y K G A
Sbjct: 144 PTQFTLTNVLASVAA---TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV++D+ +WNAMI+ + A+ F++M E+ + +T+ ++++ +
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQR 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASV 237
L++F ML + P V+ L K+ + + F+ V
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
L AL+ G V E RRL+E
Sbjct: 317 LNALISMYSRCGGV----ETARRLIE 338
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEG-----GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
P + ++L C L+ + G + + VH ++++ ++ SV++ L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
A ++F M ++ +WN ++S+ + FD++ ++
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQR 109
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 85 GKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G +H L +E+ L + F ++ Y K G ++ F + +D +W MI
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
+ + +A+ + +M ++G+ + T VL + A + +E G ++ HS + K
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKV-HSFIVKL 175
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G +D A LF+ M RD+V++ S+I G++ G EA+ +F M + +R
Sbjct: 310 MIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQM--RRHDLR 367
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VS+L++CA L G L G+ +H I + + + +++GTAL+D+Y K G +E A
Sbjct: 368 ADNFTMVSLLTACASL---GALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEA 424
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M ++DV TW+AMI+ LA N K AL F MK G + N +T++A+LTAC+ +
Sbjct: 425 SLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHS 484
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F M + P++EHYGC++DLLGR+GLL EA + +R+MP +P+A + +
Sbjct: 485 CLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWAS 544
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H +L LL+L+P YV L NI+ +W A+ +R+ M E G+
Sbjct: 545 ILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGV 604
Query: 301 RKIPAYSLI 309
+K YS I
Sbjct: 605 KKAAGYSSI 613
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 37/210 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G K G +D A L + R+V+SWT +I+G+ R G EA+ F +M+ + +
Sbjct: 177 VISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG--IE 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + +LS+CA L + L G+ +H + +++S + ALID+Y K G + RA
Sbjct: 235 PDEVTVIGLLSACAQLKD---LVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRA 291
Query: 121 IRVFKS--------------------------------MVIKDVCTWNAMISSLASNSRE 148
VF + M +D+ T+N++I+ R
Sbjct: 292 WEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRL 351
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACA 178
+EAL++F +M+ LRA+ T V++LTACA
Sbjct: 352 REALLLFMQMRRHDLRADNFTMVSLLTACA 381
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T +I K+G L+ A + + ++V +W +IS + R EA+ F+ M G+
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+E+T + +L+ACA+ + + G L H ++G+ ++ + ++D+ + G + A E
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSL-HKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWE 293
Query: 225 FMRSMPFEPDASVLGALL-GACKIHGAVDL 253
++ A++ G CK+ G VD+
Sbjct: 294 VFDALGRGRRPQSWNAMIDGYCKL-GHVDV 322
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 188/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + G +D A LF M R+V+SWT++++G+ +NG EA+ F M VR
Sbjct: 157 LLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCG-VR 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA + G L LG++V Y ++ +V++ AL+++Y K G + RA
Sbjct: 216 PNEVTVSSVLPACAAV---GALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRA 272
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+ + +D+C+WN+MI + A + +E L +F +++ G + + ITFV V+ AC
Sbjct: 273 WMVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTH 332
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G LF+SM +F + P +EHYGC+VDLLGRAGLL EA + SMP EPDA + G
Sbjct: 333 GGLVDEGKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWG 392
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG ++L +L+ L+P++ V+LSNI+A +W+ + K + E
Sbjct: 393 ALLGACSFHGNLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKD 452
Query: 300 IRKIPAYSLIE 310
+K YS IE
Sbjct: 453 HKKSAGYSFIE 463
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GL 163
AL+ Y + G ++ A +F M ++V +W AM+S A N R +EA+ F EM E G+
Sbjct: 155 NALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGV 214
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
R NE+T +VL ACA + LG ++ G+ + + +V++ + G + A
Sbjct: 215 RPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYV-ANALVEMYAKCGSIRRAW 273
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
R + + D +++ A +HG
Sbjct: 274 MVFRGIGKQRDLCSWNSMIMAFAVHG 299
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A L+F M +D++SW +II G+ +N EA+ +F N++
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFS 496
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VL +CA L G+++HGYI+RN + +L+D+Y K G L A
Sbjct: 497 PDERTVACVLPACASL---SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + KEA+ +F++M++ G+ A+EI+FV++L AC+ +
Sbjct: 554 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + ++ P +EHY C+VD+L R G L +A F+ +MP PDA++ GA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L +V ++ EL+P++ G YV+++NI+A E+W + LRK + + G+
Sbjct: 674 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 734 RKNPGCSWIE 743
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+DSA +F M R VVS+TS+I G+ R G GEA+ +F+ M +
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM--EEEGIS 394
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T +VL+ CA L++EG K+VH +I N++ +F+ AL+D+Y K G ++
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEG-----KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD-EMKEKGLRANEITFVAVLTAC 177
A VF M +KD+ +WN +I + N EAL +F+ ++EK +E T VL AC
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 178 ARAQLVELGLEL 189
A + G E+
Sbjct: 510 ASLSAFDKGREI 521
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ A +F+ + + W ++N ++G F +I +FK MM + V +
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG--VEMDSY 196
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V S + L + G G+Q+HG+IL++ +G +L+ Y K ++ A +VF
Sbjct: 197 TFSCVSKSFSSLRSVHG---GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVF 253
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +WN++I+ SN ++ L +F +M G+ + T V+V CA ++L+
Sbjct: 254 DEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLIS 313
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + HS+ K ++D+ + G L AK R M
Sbjct: 314 LGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T SVL CA + L GK+V +I N V+ +G+ L +Y G L+ A RVF
Sbjct: 96 TLCSVLQLCA---DSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ I+ WN +++ LA + ++ +F +M G+ + TF V + + + V
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 185 LGLEL 189
G +L
Sbjct: 213 GGEQL 217
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G ++NG + +A +F+ M D VSWT++I+G V+NG EAI F+ M+ ++ V
Sbjct: 176 VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAML--LDGVE 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++V+S+CA + G L LG VH ++R + +V + +LID+Y + G +E A
Sbjct: 234 PDYVTLIAVISACAEV---GALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN+MI A+N R +A+ F+ M+ +G + + +TF VLTAC+
Sbjct: 291 RQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHG 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL + M ++ + MEHYGCVVDLLGR+G L EA + +MP P+ VLGA
Sbjct: 351 GLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGA 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG V + ++ + LLEL P YV+LSNI+A + +W+ A +R M G+
Sbjct: 411 LLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGL 470
Query: 301 RKIPAYSLIE 310
RK P YS +E
Sbjct: 471 RKRPGYSAVE 480
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 108/293 (36%), Gaps = 66/293 (22%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG-GLY 83
DV SWTS I + G A M+ + PN+ T ++VLS+CA +
Sbjct: 63 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122
Query: 84 LGKQVHGYILR---NEIVLSV-----FMGTALIDL---------------YGKV------ 114
L VH +L+ + ++LS + + L L Y V
Sbjct: 123 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 182
Query: 115 -GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G + A VF M D +W A+I N R EA+ F M G+ + +T +AV
Sbjct: 183 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAV 242
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---------- 223
++ACA + LG+ H ++ + + + ++D+ R G + A+
Sbjct: 243 ISACAEVGALGLGM-WVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRT 301
Query: 224 ------------------------EFMRSMPFEPDASVLGALLGACKIHGAVD 252
E MR F+PDA +L AC G D
Sbjct: 302 VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTD 354
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G+V+ G M A +FE M + + SWT+I++G+ R GC+ +A+ F+ M + +
Sbjct: 189 LISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM--QMVGIE 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + VSVL +CA L G L LGK +H Y + + ++ + ALI++Y K G ++
Sbjct: 247 PDEISLVSVLPACAQL---GALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEG 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +DV +W+ MI LA++ R EA+ +F EM++ + N ITFV +L+ACA A
Sbjct: 304 RRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHA 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ GL F SM + + P +EHYGC+V+LLG +G L +A E ++ MP +PD+++ G+
Sbjct: 364 GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGS 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ H +++ LLEL+P G YV+LSN++A L +W+ + +RK M +
Sbjct: 424 LLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSM 483
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 484 KKTPGCSSIE 493
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 141/301 (46%), Gaps = 43/301 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
M+D + + + A LLF+ + + + ++I + N + AI V+K M+G+ N
Sbjct: 52 MVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGEN 111
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ P++ T+ V+ SCAGL+ LGKQVHG++ + + + +L+++Y K L
Sbjct: 112 PIFPDKFTFPFVVKSCAGLMCYD---LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSL 168
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK---------------- 161
+ A +VF+ M +D +WN +IS + + A +F+EM++K
Sbjct: 169 DDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIG 228
Query: 162 ---------------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
G+ +EI+ V+VL ACA+ +ELG + H K + +
Sbjct: 229 CYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELG-KWIHFYADKAGFLRNICVC 287
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLL 262
++++ + G + E + M E D ++++ L + H A++L E+ + +
Sbjct: 288 NALIEMYAKCGSIDEGRRLFDQMN-ERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKI 346
Query: 263 E 263
E
Sbjct: 347 E 347
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+R E +V +L +C +V K++H +I++ + S F+ T ++D+ E
Sbjct: 10 IREMEDIFVPILKNCPNIVEL------KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETE 63
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-----KEKGLRANEITFVAV 173
A +FK + + +NAMI + N A+ ++ +M E + ++ TF V
Sbjct: 64 YANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFV 123
Query: 174 LTACARAQLVELGLELFHSMLGKF 197
+ +CA +LG ++ H + KF
Sbjct: 124 VKSCAGLMCYDLGKQV-HGHVFKF 146
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 192/310 (61%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y +G + +++ LF+ M +RD++SW+S+I+ F + G EA+ +F+ M + +
Sbjct: 134 LINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDIL 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +SV+S+ + L G L LG VH +I R + L+V +G+ALID+Y + G ++R+
Sbjct: 194 PDGVVMLSVISAVSSL---GALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRS 250
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M ++V TW A+I+ LA + R +EAL F +M E GL+ + I F+ VL AC+
Sbjct: 251 VKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHG 310
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F SM ++ + P +EHYGC+VDLLGRAG++ EA +F+ M P++ +
Sbjct: 311 GLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRT 370
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC H + L + R+ EL P H G YV+LSN + G+ W + +R +M E+ I
Sbjct: 371 LLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKI 430
Query: 301 RKIPAYSLIE 310
K P SL+
Sbjct: 431 VKEPGLSLVH 440
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H +L+ ++++ ALI+ YG G L ++++F M +D+ +W+++IS A
Sbjct: 115 IHTLVLKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGL 174
Query: 148 EKEALVMFDEM--KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
EAL +F +M KE + + + ++V++A + +ELG+ + H+ + + V +
Sbjct: 175 PDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWV-HAFISRIGVNLTVSL 233
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++D+ R G + + + MP + AL+ +HG
Sbjct: 234 GSALIDMYSRCGDIDRSVKVFDEMPHR-NVVTWTALINGLAVHG 276
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 184/309 (59%), Gaps = 22/309 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K+GD+ SA LLF+ + +RD T +N F R G ++
Sbjct: 159 LLNVYSKSGDIKSARLLFDQVDQRD----TEALNLFHRMQTAG---------------IK 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ VS L +CA L G L GK +H YI ++EI + +G LID+Y K G LE A
Sbjct: 200 LDNVALVSTLQACADL---GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M K V W AMIS A + R +EAL F +M+ G+ N++TF +LTAC+ A
Sbjct: 257 IEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 316
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV LF SM P +EHYGC+VDLLGRAGLL EA+E + +MP +P+A++ GA
Sbjct: 317 GLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGA 376
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC IHG ++L ++G+ L+++ P H GRY+ L++IHA WN+A +R+ M E G+
Sbjct: 377 LLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 436
Query: 301 RKIPAYSLI 309
K+P S+I
Sbjct: 437 SKLPGCSVI 445
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 30/245 (12%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A +F+ + + + W ++I G+ + EA+ ++ +M+ + V N T+
Sbjct: 65 SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML--YHSVPHNAYTFP 122
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L +C+ + L +Q+H +I++ ++ +L+++Y K G ++ A +F +
Sbjct: 123 FLLKACSSM---SALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ R+ EAL +F M+ G++ + + V+ L ACA +++ G
Sbjct: 180 -----------------DQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG- 221
Query: 188 ELFHSMLGKFEVV--PIMEHYGCV-VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
+ H+ + K E+ PI+ GCV +D+ + G L EA E R M E SV A++
Sbjct: 222 KWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISG 277
Query: 245 CKIHG 249
IHG
Sbjct: 278 YAIHG 282
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV--GCLER 119
N A + +L C+ + +Q+HG +L+ ++L + L+ G L
Sbjct: 17 NAAQTLHLLQRCSNMEEL------RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAY 70
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF + + WN MI +++ +EAL+++ M + N TF +L AC+
Sbjct: 71 ARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSS 130
Query: 180 AQLVE 184
+E
Sbjct: 131 MSALE 135
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G M+ A +F + KRD+VSW S+I ++ AI +F+ M V+ +
Sbjct: 478 VIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM--GVSGIC 535
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L +E GK +HG+++++ + L V+ + LID+Y K G L+ A
Sbjct: 536 FDCVSISAALSACANLPSES---FGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAA 592
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACAR 179
+ VF +M K++ +WN++I++ ++ + K++L +F EM EK G R ++ITF+ +++ C
Sbjct: 593 MNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCH 652
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ G+ F SM + + P EHY CVVDL GRAG LSEA E ++SMPF PDA V G
Sbjct: 653 VGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWG 712
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGA ++H V+L RL++L P + G YV++SN HA W T +R M E
Sbjct: 713 TLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKERE 772
Query: 300 IRKIPAYSLIE 310
++KIP YS IE
Sbjct: 773 VQKIPGYSWIE 783
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 10/222 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G D AI LF M + D V+W +I+G+V++G E++ F M+ + V P+
Sbjct: 280 YSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG--VLPDAI 337
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L S + N L +Q+H YI+R+ I L +F+ +ALID Y K + A ++F
Sbjct: 338 TFSSLLPSVSKFEN---LEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIF 394
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
DV + AMIS N +AL MF + + + NEIT V++L ++
Sbjct: 395 SQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALK 454
Query: 185 LGLELFHSMLGK-FEVVPIMEHYGC-VVDLLGRAGLLSEAKE 224
LG EL ++ K F+ + GC V+D+ + G ++ A E
Sbjct: 455 LGRELHGFIIKKGFDN---RCNIGCAVIDMYAKCGRMNLAYE 493
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 11/261 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + A +F DVV +T++I+G++ NG +A+ +F+ ++ +
Sbjct: 377 LIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVK--IS 434
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS+L GL+ L LG+++HG+I++ +G A+ID+Y K G + A
Sbjct: 435 PNEITLVSILPVIGGLL---ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLA 491
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + +D+ +WN+MI+ A + A+ +F +M G+ + ++ A L+ACA
Sbjct: 492 YEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANL 551
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G + H + K + + ++D+ + G L A +M E + +
Sbjct: 552 PSESFG-KAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMK-EKNIVSWNS 609
Query: 241 LLGACKIHGAV--DLC--HEV 257
++ A HG + LC HE+
Sbjct: 610 IIAAYGNHGKLKDSLCLFHEM 630
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y++ G +D A LF+ +L++D V W ++NG+ + G I F M ++ +
Sbjct: 175 LIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLM--RMDQIS 232
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+ VLS CA L++ LG Q+HG ++ + + + +L+ +Y K G +
Sbjct: 233 PNAVTFDCVLSVCASKLLID-----LGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFD 287
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
AI++F+ M D TWN MIS + +E+L+ F EM G+ + ITF ++L + +
Sbjct: 288 DAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVS 347
Query: 179 RAQLVE 184
+ + +E
Sbjct: 348 KFENLE 353
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 42/264 (15%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL-YLGKQ 87
W SII+ FVR G +A+ + M+ V P+ +T+ ++ +C L N G+ +L
Sbjct: 102 WNSIISSFVRMGLLNQALAFYFKML--CFGVSPDVSTFPCLVKACVALKNFKGIEFLSDT 159
Query: 88 VHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
V + NE F+ ++LI Y + G ++ A ++F ++ KD WN M++ A
Sbjct: 160 VSSLGMDCNE-----FVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCG 214
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL----------------- 189
+ F M+ + N +TF VL+ CA L++LG++L
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN 274
Query: 190 ----FHSMLGKFE----VVPIMEH-----YGCVVDLLGRAGLLSEAKEFMRSMPFE---P 233
+S G+F+ + +M + C++ ++GL+ E+ F M P
Sbjct: 275 SLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP 334
Query: 234 DASVLGALLGACKIHGAVDLCHEV 257
DA +LL + ++ C ++
Sbjct: 335 DAITFSSLLPSVSKFENLEYCRQI 358
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM- 127
+L C+ L L GKQVH +++ N I + ++ +Y G ++F +
Sbjct: 37 LLQDCSNLT---LLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93
Query: 128 -VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ + WN++ISS +AL + +M G+ + TF ++ AC
Sbjct: 94 SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 144
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G ++NG + +A +F+ M D VSWT++I+G V+NG EAI F+ M+ ++ V
Sbjct: 142 VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAML--LDGVE 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++V+S+CA + G L LG VH ++R + +V + +LID+Y + G +E A
Sbjct: 200 PDYVTLIAVISACAEV---GALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN+MI A+N R +A+ F+ M+ +G + + +TF VLTAC+
Sbjct: 257 RQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHG 316
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL + M ++ + MEHYGCVVDLLGR+G L EA + +MP P+ VLGA
Sbjct: 317 GLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGA 376
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG V + ++ + LLEL P YV+LSNI+A + +W+ A +R M G+
Sbjct: 377 LLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGL 436
Query: 301 RKIPAYSLIE 310
RK P YS +E
Sbjct: 437 RKRPGYSAVE 446
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 108/293 (36%), Gaps = 66/293 (22%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG-GLY 83
DV SWTS I + G A M+ + PN+ T ++VLS+CA +
Sbjct: 29 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88
Query: 84 LGKQVHGYILR---NEIVLSV-----FMGTALIDL---------------YGKV------ 114
L VH +L+ + ++LS + + L L Y V
Sbjct: 89 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 148
Query: 115 -GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G + A VF M D +W A+I N R EA+ F M G+ + +T +AV
Sbjct: 149 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAV 208
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---------- 223
++ACA + LG+ H ++ + + + ++D+ R G + A+
Sbjct: 209 ISACAEVGALGLGM-WVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRT 267
Query: 224 ------------------------EFMRSMPFEPDASVLGALLGACKIHGAVD 252
E MR F+PDA +L AC G D
Sbjct: 268 VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTD 320
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 186/313 (59%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+ +A +F M +R++VSW+++++ VR G FGEA+ VF MM R
Sbjct: 151 MVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREE--FR 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCL 117
P+ VSVL +CA L G + G+ VH Y+ ++ + TAL+D+Y K GC+
Sbjct: 209 PDVVVLVSVLKACAHL---GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCM 265
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A +VF + +DV WNAMI LA N + AL +F M +KG NE TF+AVL AC
Sbjct: 266 EDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCAC 325
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
V+ G +F SM + + P EHYGC+ DLLGRAG + EA+ + MP EP AS
Sbjct: 326 THTGRVDEGKRVFKSMQ-DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ 384
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GAL+ +C++H +++ VG+RL+EL+P GRYVVL N++A RW A +R+ M +
Sbjct: 385 WGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMED 444
Query: 298 AGIRKIPAYSLIE 310
G +K S IE
Sbjct: 445 RGAKKETGLSFIE 457
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 12/211 (5%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
L V ++ YGK G L A VF M +++ +W+AM+ + EAL +FD
Sbjct: 142 ALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDR 201
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM----LGKFEVVPIMEHYGCVVDLL 213
M + R + + V+VL ACA VE G + + G ++E +VD+
Sbjct: 202 MMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLET--ALVDMY 259
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGR 271
+ G + +A + + D + A++G ++G + E+ RR+L+ P
Sbjct: 260 CKCGCMEDAWQVFDGV-HRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTF 318
Query: 272 YVVL-SNIHAGLERWNRATDLRKAMVEAGIR 301
VL + H G R + + K+M + GI+
Sbjct: 319 IAVLCACTHTG--RVDEGKRVFKSMQDYGIK 347
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK GD+D +F+ M+ RD+V W SII GF ++G AI +F M
Sbjct: 209 LIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAG--FS 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T SVL +C G+V L G+QVH ++L+ + + + AL+D+Y K G LE A
Sbjct: 267 SNQGTLTSVLRACTGMVM---LEAGRQVHAHVLKYD--RDLILHNALLDMYCKCGSLEDA 321
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +W+ M+S LA N + EAL +FD MK +G+ N +T V VL AC+ A
Sbjct: 322 DALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHA 381
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM F + P EH+ C+VDLLGRAG L EA EF+ M EPD+ +
Sbjct: 382 GLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRT 441
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H L R +L+L+P G V+LSN +A L +W A KAM + G+
Sbjct: 442 LLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGM 501
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 502 RKEPGRSWIE 511
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 12/227 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVR-NGCFGEAICVFKNMMGNVNLVRPNE 63
Y K G +D A+ +F+ M R+VV+WT+++ +G EA+ M + V PN
Sbjct: 114 YAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAM--RRDGVAPNA 171
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ SVL +C G L VH ++ + VF+ ++LID Y K+G L+ RV
Sbjct: 172 YTFSSVLGAC---TTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRV 225
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F MV +D+ WN++I+ A + A+ +F MK+ G +N+ T +VL AC ++
Sbjct: 226 FDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVML 285
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
E G ++ H+ + K++ I+ + ++D+ + G L +A MP
Sbjct: 286 EAGRQV-HAHVLKYDRDLIL--HNALLDMYCKCGSLEDADALFHRMP 329
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 77 VNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
V G G+ +H ++ L ++ +F+ +L +Y K G L+ A+R+F M +++
Sbjct: 75 VRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRN 134
Query: 132 VCTWNAMISSLAS-NSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
V TW ++++LAS + R++EAL M+ G+ N TF +VL AC
Sbjct: 135 VVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 191/300 (63%), Gaps = 5/300 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGYV+ G+++ A LF+ M +R VVSW +I G+ ++G F EA+ VF+ M + V
Sbjct: 176 MIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREM--QMAEVP 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LGK VH Y +RN I + +G+ALID+Y K G +E+A
Sbjct: 234 PNYVTLVSVLPAMSRL---GALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ + ++V TW+ +I+ LA + R K+ L F++M+ G+ +++T++ +L+AC+ A
Sbjct: 291 LQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHA 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F M+ + P +EHYGC+VDLLGRAGLL E++E + +MP +PD + A
Sbjct: 351 GLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKA 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK+HG V++ V L+EL P G YV LSNI+A L W +R M E +
Sbjct: 411 LLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDV 470
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 59/271 (21%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+D A +F +M + + S+ ++I + +A+ VF M+ + + V PN T+ SV
Sbjct: 37 DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCS-VEPNCFTFPSV 95
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS------------------------ 100
+C L G+QVHG ++ +E V+S
Sbjct: 96 FKACG---RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVF 152
Query: 101 -----------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
V + +ID Y ++G LE A +F M + V +WN MI+ A
Sbjct: 153 VDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYA 212
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG----LELFHSMLGKFEV 199
+ KEA+ +F EM+ + N +T V+VL A +R +ELG L + +G +V
Sbjct: 213 QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV 272
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ++D+ + G + +A + +P
Sbjct: 273 LG-----SALIDMYAKCGSIEKALQVFEGLP 298
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 197/323 (60%), Gaps = 18/323 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
++DGY K D+ +A +F M +RDVVSW+++I+G V+ G EA+ +F+ MM N
Sbjct: 134 LLDGYAKCHDLPAARKVFARMPQRDVVSWSAMIDGCVKCGEHREALALFE-MMENAAARS 192
Query: 59 ---------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
R N+ T VSVL +CA L G L G++ H + L++ + T+L+D
Sbjct: 193 AEEEDGGGGARANDVTMVSVLGACAQL---GDLERGRRAHRCLRERGFALNLRLATSLVD 249
Query: 110 LYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
+Y K G + A+ VF ++ ++ DV WNA+I LA + +++ +F EM+ G+ +E
Sbjct: 250 MYAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDE 309
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
IT++ +L+ACA LV+ E F S+ + + P +EHY C+VD+LGRAG L E ++
Sbjct: 310 ITYLCLLSACAHGGLVDEAWEFFRSLEAQ-GLRPHVEHYACLVDVLGRAGRLEEVYGVVK 368
Query: 228 SMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
SMP +P SVLGALL AC +HG V+L +GRRL++LQP H GRY+ LSNI+A RW
Sbjct: 369 SMPMKPSVSVLGALLNACHLHGWVELGEVLGRRLVQLQPDHDGRYIGLSNIYAVARRWQE 428
Query: 288 ATDLRKAMVEAGIRKIPAYSLIE 310
A RK M + G++K+P +S I+
Sbjct: 429 AKKARKVMEDRGVKKVPGFSEID 451
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--- 161
AL+D Y K L A +VF M +DV +W+AMI +EAL +F+ M+
Sbjct: 132 NALLDGYAKCHDLPAARKVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAAR 191
Query: 162 ---------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
G RAN++T V+VL ACA+ +E G H L + + +VD+
Sbjct: 192 SAEEEDGGGGARANDVTMVSVLGACAQLGDLERGRRA-HRCLRERGFALNLRLATSLVDM 250
Query: 213 LGRAGLLSEAKEFMRSMPFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
+ G +SEA E ++P E D + A++G +HG E+ LE+Q
Sbjct: 251 YAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHGMATKSVEI---FLEMQ 301
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +F + ++D + W S+I +NG GEAI +F+ M + R
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM--GMEGTR 459
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + LS+CA L L+ GK++HG +++ + ++ ++LID+Y K G L +
Sbjct: 460 YDCVSISGALSACANLP---ALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFS 516
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M ++ +WN++IS+ ++ KE L +F EM G++ + +TF+ +++AC A
Sbjct: 517 RRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ +H M ++ + MEHY CV D+ GRAG L EA E + SMPF PDA V G
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGT 636
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG V+L + L +L P + G YV+L+N+ AG +W + +R M E G+
Sbjct: 637 LLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGV 696
Query: 301 RKIPAYSLIE 310
RK+P YS IE
Sbjct: 697 RKVPGYSWIE 706
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 10/284 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D++ A + D V T++I+G+V NG EA+ F+ ++ ++
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE--RMK 358
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S+ + AGL L LGK++HG I++ ++ +G+A++D+Y K G L+ A
Sbjct: 359 PTSVTFSSIFPAFAGL---AALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLA 415
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KD WN+MI+S + N R EA+ +F +M +G R + ++ L+ACA
Sbjct: 416 CRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H ++ K + + ++D+ + G L+ ++ M E + +
Sbjct: 476 PALHYGKEI-HGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNS 533
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAG 281
++ A HG + C + +L +QP H ++S HAG
Sbjct: 534 IISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAG 577
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 11/258 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + +A LF+ + D+VSW II+G+V+NG GEA +F+ M+ ++P+
Sbjct: 204 YSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAG--IKPDSI 261
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S L L++ L K++HGYI+R+ +VL VF+ +ALID+Y K +E A ++
Sbjct: 262 TFASFLPCVNELLS---LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKIL 318
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
D MIS N + KEAL F + ++ ++ +TF ++ A A +
Sbjct: 319 CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG EL H + K ++ ++D+ + G L A + E DA +++ +
Sbjct: 379 LGKEL-HGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRIT-EKDAICWNSMITS 436
Query: 245 CKIHG----AVDLCHEVG 258
C +G A++L ++G
Sbjct: 437 CSQNGRPGEAINLFRQMG 454
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +NG + A LF+N+ ++D V W ++NG+V+NG G AI +F M + ++
Sbjct: 99 LIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSE--IK 156
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ VLS CA +E L LG Q+HG + + L + L+ +Y K CL+ A
Sbjct: 157 PNSVTFACVLSVCA---SEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAA 213
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
++F + D+ +WN +IS N EA +F M G++ + ITF + L
Sbjct: 214 RKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFL 267
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 5/185 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV+ G + A LF + +W +I GF G F A+ + M+G V P++
Sbjct: 2 YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG--VSPDKY 59
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V+ +C GL + + +GK VH + + VF+G++LI LY + G L A +F
Sbjct: 60 TFPYVVKACCGLKS---VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
++ KD WN M++ N A+ +F EM+ ++ N +TF VL+ CA +++
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176
Query: 185 LGLEL 189
LG +L
Sbjct: 177 LGTQL 181
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G ++NG + +A +F+ M D VSWT++I+G V+NG EAI F+ M+ ++ V
Sbjct: 87 VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAML--LDGVE 144
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++V+S+CA + G L LG VH ++R + +V + +LID+Y + G +E A
Sbjct: 145 PDYVTLIAVISACAEV---GALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELA 201
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +WN+MI A+N R +A+ F+ M+ +G + + +TF VLTAC+
Sbjct: 202 RQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHG 261
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL + M ++ + MEHYGCVVDLLGR+G L EA + +MP P+ VLGA
Sbjct: 262 GLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGA 321
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG V + ++ + LLEL P YV+LSNI+A + +W+ A +R M G+
Sbjct: 322 LLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGL 381
Query: 301 RKIPAYSLIE 310
RK P YS +E
Sbjct: 382 RKRPGYSAVE 391
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEG-GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PN+ T ++VLS+CA + L VH +L+ + + T L+ Y
Sbjct: 10 PNDVTLLTVLSACADSPSSPLARRLALSVHARVLK-LFPSHLLLSTCLVRFYFASRLPHL 68
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+++F +M ++ T+N +IS L N A +FD M +++++ A++ C +
Sbjct: 69 ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAP----DKVSWTALIDGCVK 124
Query: 180 AQLVELGLELFHSML 194
+ ++ F +ML
Sbjct: 125 NGRHDEAIDCFRAML 139
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G +D A +LF+ + +RD + W +I+G+ ++G E + +F+ M+ VR
Sbjct: 12 MITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAK--VR 69
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T ++VLS+C G L G+ VH YI N I ++V +GT+LID+Y K G LE A
Sbjct: 70 PNEVTVLAVLSACG---QTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA 126
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KDV WN+M+ A + ++AL +F EM G + +ITF+ VL AC+ A
Sbjct: 127 RLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHA 186
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F+SM ++ + P +EHYGC+V+LLGRAG L EA E +++M + D + G
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG + L ++ L+ + G YV+LSNI+A W +R M E+G
Sbjct: 247 LLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGF 306
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 307 EKEPGCSSIE 316
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TA+I Y K G ++ A +F + +D WN MI A + E L++F +M +R
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
NE+T +AVL+AC + +E G HS + + + ++D+ + G L +A+
Sbjct: 70 PNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 193/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GY KNGD+ SA LF+ M +R++VSW ++I G+ +N EA+ +F NM+ V LV
Sbjct: 325 LLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLV- 383
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVH-GYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P E T V VLS+ L G L +G+++H ++ + I +S+ + A++D+Y K G ++
Sbjct: 384 PTEDTLVCVLSASGQL---GCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDA 440
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F SM K++ +WN+MIS+ AS K+AL +FD+M GL+ + ITF+ VL+AC+
Sbjct: 441 AAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSY 500
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V G F SM F V P EHY C+VDLL R GLL EA E + MP E G
Sbjct: 501 GGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWG 560
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC+ HG V++ G +LLEL P+ G Y +L+NI A ++W +R+ M E G
Sbjct: 561 ALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERG 620
Query: 300 IRKIPAYSLIE 310
++K+P +SLIE
Sbjct: 621 VKKVPGHSLIE 631
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 128/224 (57%), Gaps = 9/224 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV+ G + A +F+ +DVV+WT++ING+ RN EAI +F +M+ + V+
Sbjct: 193 LIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSD--VK 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +++LS+C+ +G +GK +H +I R +I S+ + A++D+Y K GCL A
Sbjct: 251 PNEVTMIALLSACS---QKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTA 307
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +M +DV +W ++++ A N A +FDEM E+ N +++ A++ ++
Sbjct: 308 REIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPER----NIVSWNAMIAGYSQN 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
LELFH+M+ +VP + CV+ G+ G L +E
Sbjct: 364 SQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQE 407
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 6/222 (2%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD+ A L+F+ + W ++I G+ + F+ M+ N + ++V
Sbjct: 99 SGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMI--RNRAEFDSGSFV 156
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
L +C + +G VH I + +F+ LI Y + GCL A ++F
Sbjct: 157 FALKACGQFAEK---IVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDES 213
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+KDV TW MI+ A N+ EA+ +F+ M ++ NE+T +A+L+AC++ E+G
Sbjct: 214 SVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGK 273
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L H + + ++ + ++D+ + G L+ A+E +M
Sbjct: 274 TL-HEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNM 314
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDMD A +LF+ M +++V WT +I+G+ G +AI ++ N M L +
Sbjct: 251 MVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLY-NQMEEAGL-K 308
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T +S+LS+CA G L LGK+VH I R S + ALID+Y K G LE A
Sbjct: 309 FDDGTVISILSACA---VSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F MV KDV +WNA+I LA + ++AL +F MK +G +++TFV VL AC A
Sbjct: 366 LSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHA 425
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL FH+M + V P +EHYGC+VDLLGR G L EA + SMP EP+A + G
Sbjct: 426 GFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGT 485
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H A L EV RL++ + G +LSNI+A W+ ++R M I
Sbjct: 486 LLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSI 545
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 546 QKPSGGSSIE 555
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 17/251 (6%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G + +A +FE M +RD VSW S+I G V+ G GEA +F M
Sbjct: 156 LIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM------ 209
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T VS + G V G + ++ + +V + ++ Y K G ++
Sbjct: 210 --PERDT-VSWNTILDGYVKAGEMNAAFELFEKMPARNVV----SWSTMVLGYSKAGDMD 262
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M +K++ W MIS A K+A+ ++++M+E GL+ ++ T +++L+ACA
Sbjct: 263 MARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACA 322
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ L+ LG + H+ + + ++D+ + G L A M D
Sbjct: 323 VSGLLGLGKRV-HASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSW 380
Query: 239 GALLGACKIHG 249
A++ +HG
Sbjct: 381 NAIIQGLAMHG 391
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A+ +F + DV+ + ++I VRN A VF M + V + TY +L
Sbjct: 65 MTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSG--VCADNFTYPFLL 122
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMV 128
+C+G V + + + +H + + L +F+ +LID Y K G + A +VF+ M
Sbjct: 123 KACSGKV---WVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMA 179
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+D +WN+MI L EA +FDEM E+ + +++ +L +A + E
Sbjct: 180 ERDTVSWNSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTILDGYVKAGEMNAAFE 235
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LF M + V + +V +AG + A+ MP
Sbjct: 236 LFEKMPARNVV-----SWSTMVLGYSKAGDMDMARILFDKMP 272
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H +L+ + F+G LI + + A+ VF + DV +N +I + N
Sbjct: 34 KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRN 93
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
S A +F EM++ G+ A+ T+ +L AC+ V + +E+ H+ + K
Sbjct: 94 SEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRV-VEMIHAQVEK 143
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 194/313 (61%), Gaps = 6/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY++NG+++ A+ LF M R++++W SII G V+ G E++ +F M + ++
Sbjct: 201 MVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDV 260
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+P++ T SVLS+CA L G + GK VH Y+ +N+I V +GTAL+++YGK G ++
Sbjct: 261 VKPDKITIASVLSACALL---GSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQ 317
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+AI +F M KD W AMIS A + K+A F EM++ G++ N +TFV +L+AC+
Sbjct: 318 QAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACS 377
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LVE G F M + + P + HY C+VD+L RA L EA +RSMP +PD V
Sbjct: 378 HSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVW 437
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLG C++HG + L +V L++L+P + Y+ L +I+ +++ A +R +M E
Sbjct: 438 GALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKER 497
Query: 299 GIR-KIPAYSLIE 310
GI KIP S+IE
Sbjct: 498 GIETKIPGCSIIE 510
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 42/257 (16%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
S+ I G N C+ +A+ ++K M+ N +V PN T+ ++ C+ L + G +G+
Sbjct: 96 SYGCIEGGDDSNCCY-KALMLYKQML-NKGIV-PNNLTFPFLVKGCSRL--QYGGTVGEV 150
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM--------- 138
+H ++L+ + VF+G +LI L+ G + A +VF M ++DV +WN+M
Sbjct: 151 IHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGE 210
Query: 139 ----------------------ISSLASNSREKEALVMFDEMK----EKGLRANEITFVA 172
I+ L KE+L +F EM+ + ++ ++IT +
Sbjct: 211 VEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIAS 270
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
VL+ACA ++ G + H+ L K ++ + +V++ G+ G + +A E MP E
Sbjct: 271 VLSACALLGSIDHG-KWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP-E 328
Query: 233 PDASVLGALLGACKIHG 249
DAS A++ +HG
Sbjct: 329 KDASAWTAMISVFALHG 345
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA +F + DV+SW +II+G+ +NG EAI ++ N+M + N+
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY-NIMEEEGEIAANQG 452
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVL +C+ G L G ++HG +L+N + L VF+ T+L D+YGK G LE A+ +F
Sbjct: 453 TWVSVLPACS---QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + WN +I+ + ++A+++F EM ++G++ + ITFV +L+AC+ + LV+
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F M + + P ++HYGC+VD+ GRAG L A +F++SM +PDAS+ GALL A
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG VDL L E++P+H G +V+LSN++A +W ++R G+RK P
Sbjct: 630 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTP 689
Query: 305 AYSLIE 310
+S +E
Sbjct: 690 GWSSME 695
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 12/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G + +F+ M RD++SW SII + N AI +F+ M ++ ++
Sbjct: 288 LIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQ 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T +S+ S + L G + + V G+ LR L + +G A++ +Y K+G ++
Sbjct: 346 PDCLTLISLASILSQL---GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
A VF + DV +WN +IS A N EA+ M++ M+E+G + AN+ T+V+VL AC+
Sbjct: 403 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 462
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+A + G++L H L K + + + D+ G+ G L +A +P ++
Sbjct: 463 QAGALRQGMKL-HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPW 520
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
L+ HG + + + +L+ ++P H +LS H+GL
Sbjct: 521 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 567
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 22/287 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y G++ A F+++ RDV +W +I+G+ R G E I F M + L
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT- 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVL +C +++ G ++H L+ + V++ +LI LY + + A
Sbjct: 151 PDYRTFPSVLKACRTVID------GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
+F M ++D+ +WNAMIS + KEAL + GLRA + +T V++L+AC
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTE 259
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A G+ + HS K + + ++DL G L + ++ M + D
Sbjct: 260 AGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWN 317
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282
+++ A +++ A+ L E+ RL +QP C + L++I + L
Sbjct: 318 SIIKAYELNEQPLRAISLFQEM--RLSRIQPD-CLTLISLASILSQL 361
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L K +H ++ ++ + +V + L++LY +G + A F + +DV WN MIS
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 142 LASNSREKEALVMFD-EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
E + F M GL + TF +VL AC + V G ++ H + KF +
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKI-HCLALKFGFM 182
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ ++ L R + A+ MP S + G C+
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ A+ F M R++VSW +++ G+V+N +A+ VFK M+ + ++V+
Sbjct: 177 MVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVED-SIVQ 235
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L G+QVH + ++ + +V +GT+L+ +Y K G L A
Sbjct: 236 PNASTLSSVLLGCSNL---SALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDA 292
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M KD+ WNAMIS A + +A+ +F++MK++G+ + IT +AVLTAC
Sbjct: 293 CKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHT 352
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G++ F +M +++ P ++HY C+VDLL RAGLL A + SMPFEP S G
Sbjct: 353 GLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGT 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ R+L+E P++ G YV L+NI+A +W + +R+ M + +
Sbjct: 413 LLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAV 472
Query: 301 RKIPAYSLIE 310
K P YS +E
Sbjct: 473 VKTPGYSWME 482
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 15/183 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+D A +F M +DV SW ++++G +NG EA +F+ M VR VS
Sbjct: 91 GDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP-----VR----NAVS 141
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+ A L G + + + RN + TA++ Y G +++A+ F +M
Sbjct: 142 WNAMVAALACSGDMGAAED----LFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAM 197
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQLVELG 186
++++ +WNA+++ NSR +AL +F M E + + N T +VL C+ + G
Sbjct: 198 PVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFG 257
Query: 187 LEL 189
++
Sbjct: 258 RQV 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 107 LIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166
L+ + G ++ A RVF +M +KDV +WN M+S L+ N +EA MF M + N
Sbjct: 83 LLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR----N 138
Query: 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
+++ A++ A A + + +LF + K + + + +V G + +A EF
Sbjct: 139 AVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAI----LWTAMVSGYMDTGNVQKAMEFF 194
Query: 227 RSMP 230
+MP
Sbjct: 195 GAMP 198
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GDM +A+ LF + + D V+WT++I+G++ NG A+ V+ M V+ V+
Sbjct: 1140 VLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM--RVSGVQ 1197
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T+ +++ + + L L GKQ+H +++ + L F+GT+L+D+Y K G ++ A
Sbjct: 1198 PDEYTFATLIKASSCLT---ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDA 1254
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M ++ V WNAM+ LA + EAL +F M+ G++ +++TF+ VL+AC+ +
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHS 1314
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + F +M + + P +EHY C+VD LGRAG + EA+ + SMPF+ AS+ A
Sbjct: 1315 GLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRA 1374
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ G + V +LL L P YV+LSNI+A +W+ TD R M +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434
Query: 301 RKIPAYSLIE 310
+K P +S I+
Sbjct: 1435 KKDPGFSWID 1444
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G + +A F N + D++SW ++I+ + +N EAIC F++++ + ++
Sbjct: 935 LMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG--LK 992
Query: 61 PNEATYVSVLSSCAGLVNEGGLY-LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P++ T SVL +C+ +EG + LG QVH Y ++ I+ F+ TALIDLY K G ++
Sbjct: 993 PDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE 1051
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A + D+ +WNA++ +++ ++AL F M E G+ +EIT + A
Sbjct: 1052 AEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKAS 1109
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 134/289 (46%), Gaps = 18/289 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G MD A L D+ SW +I+ G++++ +A+ F M MG
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG---- 1094
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ +E T + + + L+N L GKQ+ Y ++ +++ + ++D+Y K G +
Sbjct: 1095 IPIDEITLATAIKASGCLIN---LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+ +F + D W MIS N E AL ++ M+ G++ +E TF ++ A +
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G ++ H+ + K + ++H+ +VD+ + G + +A R M
Sbjct: 1212 CLTALEQGKQI-HANVVKLDYS--LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
LLG + HG VD + R + +QP VLS H+GL
Sbjct: 1269 WNAMLLGLAQ-HGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 114/232 (49%), Gaps = 10/232 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +F ++ +W + F+ G AI FK ++ + + + T V +LS+
Sbjct: 847 AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST--IGHDSVTLVIILSAA 904
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
G + L LG+Q+H ++++ V + +L+++Y K G + A + F + D+
Sbjct: 905 VGADD---LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA---RAQLVELGLELF 190
+WN MISS A N+ E EA+ F ++ GL+ ++ T +VL AC+ + LG ++
Sbjct: 962 SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV- 1020
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
H K ++ ++DL + G + EA EF+ ++ D + A++
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 10/171 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
+I Y K G + SA +F+ RD+V+W SI+ + + F ++ ++N++ L
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ---FADS--SYENVLEGFRLFG 706
Query: 59 -VRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
+R T +++ + G + + + VHGY ++ L +F+ AL+++Y K G
Sbjct: 707 LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166
+ +A +F M +D WN M+ + NS + EAL F G +
Sbjct: 767 LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L LGK+ H I+ + + ++ LI +Y K G L A +VF +D+ TWN+++++
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686
Query: 142 ---LASNSREK--EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
A +S E E +F ++E G +T +L C + V++ E H K
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-ETVHGYAVK 745
Query: 197 --FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
FE+ + G +V++ + GL+ +A+ MP E DA + +L A
Sbjct: 746 IGFELDLFVS--GALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 192/302 (63%), Gaps = 6/302 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G+++ A FE+M RD+VSW SII G+ + G +F+NM+ +
Sbjct: 302 MIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAEN--IW 359
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++++S+ A + G L+ G+ +HG+++R ++ + F+G+A ID+Y K G ++RA
Sbjct: 360 PDFVTIINLVSAAAEI---GALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRA 416
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KDV W MI+ A + +AL +F EM+E + N++TFVAVLTAC+ +
Sbjct: 417 CMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHS 475
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V GL +F+SM ++ + P +EHYGC+VDLLGR+G SE K+ + MP +P S+ GA
Sbjct: 476 GFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGA 535
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC+ +G +++ G+ LL+L+P+ G YV+LSNI+A RW + +R+ M G+
Sbjct: 536 VLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGV 595
Query: 301 RK 302
+K
Sbjct: 596 KK 597
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++N M A +F+ M D VS+ +I G+ + G EA+ M+G ++P+E
Sbjct: 172 YLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLG--LKPDEF 229
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLERAIR 122
T + +L C L G LGK VH +I R ++ S + + AL+D+Y K L A
Sbjct: 230 TMLGLLICCGRL---GDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQS 286
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
+F +V KD +WN MI+ A + A F++M + L
Sbjct: 287 IFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDL 327
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 10 DMDSAILLFENMLKR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
++D A+LLF + ++ + ++I+ + ++ + +++ + + PN +T++
Sbjct: 80 NLDMAVLLFRHHTPHPNLYIYNTMISALSLS--LNQSFAFYNSLLSSC--IYPNRSTFLF 135
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L + L Q+H + + ++ L+ +Y + + A +VF+ M
Sbjct: 136 LLQASKFLSQV------MQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMA 189
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
D ++N MI A EAL EM GL+ +E T + +L C R +LG
Sbjct: 190 APDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLG 247
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G +D A +F M R+VVSW+++I + +NG EA+ F+ MM
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L L GK +HGYILR + + + +AL+ +YG+ G LE
Sbjct: 283 PNSVTMVSVLQACASL---AALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVG 339
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +DV +WN++ISS + K+A+ +F+EM G +TFV+VL AC+
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF +M + P +EHY C+VDLLGRA L EA + ++ M EP V G+
Sbjct: 400 GLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 459
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+IHG V+L RRL L+PK+ G YV+L++I+A + W+ ++K + G+
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519
Query: 301 RKIPAYSLIE 310
+K+P +E
Sbjct: 520 QKLPGRCWME 529
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 7/252 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G +D A +F+ KR + W ++ G E + ++ M N V
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM--NRIGVE 175
Query: 61 PNEATYVSVLSSC-AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ TY VL +C A L GK++H ++ R V++ T L+D+Y + GC++
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDY 235
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTAC 177
A VF M +++V +W+AMI+ A N + EAL F EM + K N +T V+VL AC
Sbjct: 236 ASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQAC 295
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A +E G +L H + + + I+ +V + GR G L + M + D
Sbjct: 296 ASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM-HDRDVVS 353
Query: 238 LGALLGACKIHG 249
+L+ + +HG
Sbjct: 354 WNSLISSYGVHG 365
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+S +I + G +AI V P++ TY +L C G + L
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESS------PSQQTY-ELLILCCG--HRSSLSDAL 97
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VH +IL N F+ T LI +Y +G ++ A +VF + + WNA+ +L
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
+E L ++ +M G+ ++ T+ VL AC ++ + H M GK E+ +
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT-----VNHLMKGK-EIHAHLTRR 211
Query: 207 G---------CVVDLLGRAGLLSEAKEFMRSMP 230
G +VD+ R G + A MP
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GDM +A+ LF + + D V+WT++I+G++ NG A+ V+ M V+ V+
Sbjct: 1140 VLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM--RVSGVQ 1197
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T+ +++ + + L L GKQ+H +++ + L F+GT+L+D+Y K G ++ A
Sbjct: 1198 PDEYTFATLIKASSCLT---ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDA 1254
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M ++ V WNAM+ LA + EAL +F M+ G++ +++TF+ VL+AC+ +
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHS 1314
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + F +M + + P +EHY C+VD LGRAG + EA+ + SMPF+ AS+ A
Sbjct: 1315 GLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRA 1374
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ G + V +LL L P YV+LSNI+A +W+ TD R M +
Sbjct: 1375 LLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNV 1434
Query: 301 RKIPAYSLIE 310
+K P +S I+
Sbjct: 1435 KKDPGFSWID 1444
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G + +A F N + D++SW ++I+ + +N EAIC F++++ + ++
Sbjct: 935 LMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDG--LK 992
Query: 61 PNEATYVSVLSSCAGLVNEGGLY-LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P++ T SVL +C+ +EG + LG QVH Y ++ I+ F+ TALIDLY K G ++
Sbjct: 993 PDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE 1051
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A + D+ +WNA++ +++ ++AL F M E G+ +EIT + A
Sbjct: 1052 AEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKAS 1109
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 134/289 (46%), Gaps = 18/289 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G MD A L D+ SW +I+ G++++ +A+ F M MG
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG---- 1094
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ +E T + + + L+N L GKQ+ Y ++ +++ + ++D+Y K G +
Sbjct: 1095 IPIDEITLATAIKASGCLIN---LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+ +F + D W MIS N E AL ++ M+ G++ +E TF ++ A +
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G ++ H+ + K + ++H+ +VD+ + G + +A R M
Sbjct: 1212 CLTALEQGKQI-HANVVKLDYS--LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
LLG + HG VD + R + +QP VLS H+GL
Sbjct: 1269 WNAMLLGLAQ-HGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGL 1316
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 114/232 (49%), Gaps = 10/232 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +F ++ +W + F+ G AI FK ++ + + + T V +LS+
Sbjct: 847 AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST--IGHDSVTLVIILSAA 904
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
G + L LG+Q+H ++++ V + +L+++Y K G + A + F + D+
Sbjct: 905 VGADD---LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA---RAQLVELGLELF 190
+WN MISS A N+ E EA+ F ++ GL+ ++ T +VL AC+ + LG ++
Sbjct: 962 SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV- 1020
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
H K ++ ++DL + G + EA EF+ ++ D + A++
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
+I Y K G + SA +F+ RD+V+W SI+ + + F ++ ++N++ L
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ---FADS--SYENVLEGFRLFG 706
Query: 59 -VRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
+R T +++ + G + + + VHGY ++ L +F+ AL+++Y K G
Sbjct: 707 LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
+ +A +F M +D WN M+ + NS + EAL F G
Sbjct: 767 LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGF 814
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L LGK+ H I+ + + ++ LI +Y K G L A +VF +D+ TWN+++++
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686
Query: 142 ---LASNSREK--EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
A +S E E +F ++E G +T +L C + V++ E H K
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-ETVHGYAVK 745
Query: 197 --FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
FE+ + G +V++ + GL+ +A+ MP E DA + +L A
Sbjct: 746 IGFELDLFVS--GALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 188/306 (61%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K GD+D++ +LF+++ K+ ++SW ++I G+V+ G E + ++ M + + P++
Sbjct: 136 HAKTGDLDTSHILFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEM--RQSGLTPDQY 193
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ SV +CA L L GKQ H +++++I +V + +AL+D+Y K L RVF
Sbjct: 194 TFASVFRACATLAT---LEKGKQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVF 250
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ ++V TW A+IS + R E LV F +MK +G R N +TF+AV++AC+ LV
Sbjct: 251 NKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVN 310
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E F SM + + P +HY +VDLLGRAG L EA EF+++ P + + GALLGA
Sbjct: 311 EGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEFVQNSPCGEHSVIWGALLGA 370
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG +D+ ++ +L+P++ G+YVVLSN +A W+ ++R M E+G+RK P
Sbjct: 371 CRVHGNIDMLRFAAKKYFDLEPENAGKYVVLSNAYATFGLWDNVAEVRGVMRESGMRKDP 430
Query: 305 AYSLIE 310
YS IE
Sbjct: 431 GYSRIE 436
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
ATY +L C + + G+++H ++ ++ T L+ L+ K G L+ + +
Sbjct: 92 ATYALLLQEC---IFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHIL 148
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F + K + +WNAMI+ E+E L ++DEM++ GL ++ TF +V ACA +
Sbjct: 149 FDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATL 208
Query: 184 ELGLE 188
E G +
Sbjct: 209 EKGKQ 213
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + +F L R+V++WT++I+G+ ++G E + F M R
Sbjct: 233 LMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKM--KTEGFR 290
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+++V+S+C+ GLVNEG Y Y ++ A++DL G+ G L
Sbjct: 291 PNYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQHYA----AMVDLLGRAGRLH 346
Query: 119 RAIR-VFKSMVIKDVCTWNAMISS 141
A V S + W A++ +
Sbjct: 347 EAFEFVQNSPCGEHSVIWGALLGA 370
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+++ YVK +D A +FE M +RD + SWT+I++G+ R GC+ +A+ F+ M +
Sbjct: 203 LVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRM--QMVG 260
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+E + VSVL CA L G L LGK +H Y + + ++ + ALI++Y K G ++
Sbjct: 261 IEPDEISLVSVLPDCAQL---GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSID 317
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ R+F M +DV +W+ MI LA++ R +EA+ +F EM++ + + ITFV +LTACA
Sbjct: 318 QGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA 377
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+ GL F SM + + P +EHYGC+V+LLG +G L +A E ++ MP +PD+ +
Sbjct: 378 HAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIW 437
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL +C+ HG + + LLEL+P G YV+LSN++A L +W+ + +RK M
Sbjct: 438 GSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSK 497
Query: 299 GIRKIPAYSLIE 310
++K P S IE
Sbjct: 498 SMKKTPGCSSIE 509
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---N 57
M+D G+ + A LLF+ + + + ++I + N + AI V+K M+GN N
Sbjct: 97 MVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGEN 156
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ P++ T+ V+ SCAGL+ LGKQVHG++ + + + +L+++Y K L
Sbjct: 157 PIFPDKFTFPFVVKSCAGLMCYD---LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSL 213
Query: 118 ERAIRVFKSMVIKD--VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A RVF+ M +D + +W A++S A +AL F M+ G+ +EI+ V+VL
Sbjct: 214 DDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 273
Query: 176 ACARAQLVELG 186
CA+ +ELG
Sbjct: 274 DCAQLGALELG 284
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 59/285 (20%)
Query: 19 ENMLKRDVV---SWTSIINGF------VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
+NM RD + W S++ + + + C G I V + + + +R E +V +
Sbjct: 8 QNMALRDPIICGVWLSVVPDWFMTRMSIHDSCHG-WIYVLEMKLRALK-IREMEDMFVPI 65
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L C +V K++H +I++ + S F+ T ++D+ G E A +FK +
Sbjct: 66 LKDCPNIVEL------KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVAD 119
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEM-----KEKGLRANEITFVAVLTACARAQLVE 184
+ +NAMI + N A+ ++ +M E + ++ TF V+ +CA +
Sbjct: 120 PNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYD 179
Query: 185 LGLELFHSMLGKF---------------------------------EVVPIMEHYGCVVD 211
LG ++ H + KF E + + +V
Sbjct: 180 LGKQV-HGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVS 238
Query: 212 LLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
R G ++A EF R M EPD L ++L C GA++L
Sbjct: 239 GYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALEL 283
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV +G+M A LF+ M +RDVVSW++II G+V+ GCF EA+ F M+ + V+
Sbjct: 350 MIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSE--VK 407
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS L++C+ LV L GK +H YI R+ I ++ + +LID+Y K G ++ A
Sbjct: 408 PNEYTMVSALAACSNLV---ALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSA 464
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF +K V WNAMI A + + +EA+ +F++MK + + N++TF+A+L AC+
Sbjct: 465 SSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSH 524
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V+ G F M + + P +EHYGC+VDLL R+G L +++E + SMP PD ++ G
Sbjct: 525 GYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWG 584
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR-KAMVEA 298
ALL AC+I+ ++ + +GR + E+ P H G V+L NI++ RWN A +R K + +
Sbjct: 585 ALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINS 644
Query: 299 GIRKIPAYSLIE 310
+KIP +S IE
Sbjct: 645 DRKKIPGFSSIE 656
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 10/186 (5%)
Query: 17 LFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
LF+ + + D+ + ++I + + ++I VF++++ + PN ++V +C
Sbjct: 232 LFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYF-PNRYSFVFAFGACG- 289
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
N + G+QV + ++ + +VF+ ALI ++GK G +E A VF S V +D +W
Sbjct: 290 --NGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSW 347
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N MI + + A +FDEM E+ + +++ ++ + L+ FH ML
Sbjct: 348 NTMIGAYVGSGNMVLAKELFDEMHERDV----VSWSTIIAGYVQVGCFMEALDFFHKML- 402
Query: 196 KFEVVP 201
+ EV P
Sbjct: 403 QSEVKP 408
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 192/314 (61%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GY GDM++ +F++M +R+V SW +I G+ +NG E + FK M+ ++V
Sbjct: 74 VLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVV- 132
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGY---ILRNEIVLSVFMGTALIDLYGKVGCL 117
PN+AT VLS+CA L G GK VH Y + N++ ++V ALID+YGK G +
Sbjct: 133 PNDATMTLVLSACAKL---GAFDFGKWVHKYGETLGYNKVDVNV--KNALIDMYGKCGAI 187
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A+ VFK + +D+ +WN MI+ LA++ EAL +F EMK G+ +++TFV VL AC
Sbjct: 188 EIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCAC 247
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LVE GL F+SM F ++P +EH GCVVDLL RAG L++A EF+ MP + DA +
Sbjct: 248 KHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVI 307
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGA K++ VD+ L++L+P++ +V+LSNI+ R++ A L+ AM +
Sbjct: 308 WATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRD 367
Query: 298 AGIRKIPAYSLIEA 311
G +K S IE
Sbjct: 368 TGFKKEAGVSWIET 381
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 54/264 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY+ N D+ SA F+ +RD+V W ++I+G++ G EA +F M
Sbjct: 12 MINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQM-------- 63
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
C V +++ Y +G +E
Sbjct: 64 -----------PCR-------------------------DVMSWNTVLEGYANIGDMEAC 87
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
RVF M ++V +WN +I A N R E L F M ++G + N+ T VL+ACA+
Sbjct: 88 ERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAK 147
Query: 180 AQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G + + LG +V +++ ++D+ G+ G + A E + + D
Sbjct: 148 LGAFDFGKWVHKYGETLGYNKVDVNVKN--ALIDMYGKCGAIEIAMEVFKGIK-RRDLIS 204
Query: 238 LGALLGACKIHG----AVDLCHEV 257
++ HG A++L HE+
Sbjct: 205 WNTMINGLAAHGHGTEALNLFHEM 228
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY GD+ +A LF M R+V+SWT +I+G + +A+ +F+ MM + N V+
Sbjct: 330 MLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMM-DAN-VK 387
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SVLS+C+ L G L G+ VH Y+ R++I V++G ALID+Y K G +++A
Sbjct: 388 PDEITVSSVLSACSHL---GLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKA 444
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M KD +W +MI LA N +F +M GL+ +F+ +L AC A
Sbjct: 445 LEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHA 504
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE F SM + + P M+HYGCVVDLL R+G L A EF++ MP PD +
Sbjct: 505 GLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRI 564
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H + L +LLEL P + G YV+LSN +AG +RW+ A+ +R MV +
Sbjct: 565 LLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDV 624
Query: 301 RKIPAYSLIE 310
+K ++S IE
Sbjct: 625 QKPSSWSSIE 634
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 43/309 (13%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F+ M RD+VSW S+I G+ + F E + +F N+M N V + T V
Sbjct: 206 GELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLF-NLMREAN-VTADSVTMVK 263
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V+ +C+ L +G + + YI + + V++G +LID+YG+ G ++ A RVF M
Sbjct: 264 VILACSYLCEDGVV---DSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQ 320
Query: 129 IKDVCTWNAM-------------------------------ISSLASNSREKEALVMFDE 157
K++ +WNAM IS A ++ +AL +F E
Sbjct: 321 EKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQE 380
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M + ++ +EIT +VL+AC+ L++ G + H + + ++ + ++D+ + G
Sbjct: 381 MMDANVKPDEITVSSVLSACSHLGLLDTG-QTVHEYMCRHDIKSDVYVGNALIDMYCKCG 439
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRY--V 273
++ +A E M + S +LG ++G VD E+ ++L LQP H G + +
Sbjct: 440 VVDKALEVFHDMKKKDSVSWTSMILGLA-VNGFVDNVFELFSQMLRDGLQPTH-GSFIGI 497
Query: 274 VLSNIHAGL 282
+L+ HAGL
Sbjct: 498 LLACTHAGL 506
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 11/201 (5%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
+I G ++ EAI ++ ++M N ++ N T++ + +C+ + + + G+ H
Sbjct: 127 LIRGLSQSENPNEAIVMYSDLMYNQGILGDN-LTFIYLFKACSRVKD---VLHGQVFHVQ 182
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+L+ +F+ +LI +YG G L A +VF M +D+ +WN++I + +R KE
Sbjct: 183 VLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEV 242
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV--VPIMEHYG-C 208
L +F+ M+E + A+ +T V V+ AC + L E G + SM+ E V I + G
Sbjct: 243 LDLFNLMREANVTADSVTMVKVILAC--SYLCEDG--VVDSMVKYIEDKHVDIDVYLGNS 298
Query: 209 VVDLLGRAGLLSEAKEFMRSM 229
++D+ GR GL+ A+ M
Sbjct: 299 LIDMYGRRGLVDLARRVFDRM 319
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 183/312 (58%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G M+ A L + + ++ VVSW +II+GF EA F M MG
Sbjct: 471 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG---- 526
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ TY ++L +CA LV + LGKQ+H I++ E+ ++ + L+D+Y K G ++
Sbjct: 527 VDPDNFTYATILDTCANLVT---VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 583
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F+ +D TWNAM+ A + +EAL +F+ M+ + ++ N TF+AVL AC
Sbjct: 584 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 643
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE GL FHSML + + P +EHY CVVD++GR+G +S+A E + MPFE DA +
Sbjct: 644 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 703
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
LL CKIHG V++ + +L+L+P+ YV+LSNI+A WN T LRK M
Sbjct: 704 RTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFN 763
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 764 GLKKEPGCSWIE 775
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 12/233 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY GD+ A LF+ M +RDVVSW S+I+G++ NG + I VF M MG V
Sbjct: 114 MLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF- 172
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ T+ VL SC+ L + GG G Q+HG ++ V G+AL+D+Y K L+
Sbjct: 173 ---DRTTFAVVLKSCSSLEDHGG---GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+I+ F SM K+ +W+A+I+ N + L +F EM++ G+ ++ TF +V +CA
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286
Query: 179 RAQLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG +L H++ F ++ +D+ + LS+A++ S+P
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQKLFNSLP 337
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 39/230 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A L+FE M+ RD VSW +II +NG
Sbjct: 403 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG-------------------- 442
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE +S+ +H I+++ + L F+G ALID+Y K G +E+A
Sbjct: 443 -NEEKTLSLF-----------------IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKA 484
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ + + V +WNA+IS + + +EA F +M E G+ + T+ +L CA
Sbjct: 485 EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 544
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
VELG ++ H+ + K E+ +VD+ + G + + + P
Sbjct: 545 VTVELGKQI-HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 593
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 20/222 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +D +I F +M +++ VSW++II G V+N + +FK M V
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAG--VG 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T+ SV SCAGL L LG Q+HG+ L+ + V +GTA +D+Y K L A
Sbjct: 273 VSQSTFASVFRSCAGL---SALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDA 329
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F S+ ++ ++NA+I A + +KGL +E++ ACA
Sbjct: 330 QKLFNSLPNHNLQSYNAIIVGYARS--------------DKGLGLDEVSLSGAFRACAVI 375
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ GL++ H + K + ++D+ G+ G L EA
Sbjct: 376 KGDLEGLQV-HGLSMKSLCQSNICVANAILDMYGKCGALVEA 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 124/271 (45%), Gaps = 31/271 (11%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y+K ++ A LF ++ ++ S+ +II G+ R+ +
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD----------------KGLGL 360
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+E + +CA V +G L G QVHG +++ ++ + A++D+YGK G L A
Sbjct: 361 DEVSLSGAFRACA--VIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 417
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMF--DEMKEKGLRANEITFVAVLTACAR 179
VF+ MV +D +WNA+I++ N E++ L +F + + + L + +A++ ++
Sbjct: 418 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSK 477
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDAS 236
++E E H L + VV + ++ EA++ M M +PD
Sbjct: 478 CGMMEKA-EKLHDRLAEQTVVS----WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF 532
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLL--ELQ 265
+L C V+L ++ +++ ELQ
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIKKELQ 563
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ T+ + C+ + L GKQ H ++ E +VF+ LI +Y K LE A +
Sbjct: 42 KKTFSHIFQECS---DRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFK 98
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
VF M +D +WNAM+ A A +FD M E+
Sbjct: 99 VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPER 137
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 186/313 (59%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+ +A +F M +R++VSW+++++ VR G FGEA+ VF MM R
Sbjct: 151 MVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREE--FR 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCL 117
P+ VSVL +CA L G + G+ VH Y+ ++ + TAL+D+Y K GC+
Sbjct: 209 PDVVVLVSVLKACAHL---GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCM 265
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A +VF + +DV WNAMI LA N + AL +F M +KG NE TF+AVL AC
Sbjct: 266 EDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCAC 325
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
V+ G +F SM + + P EHYGC+ DLLGRAG + EA+ + MP EP AS
Sbjct: 326 THTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ 384
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GAL+ +C++H +++ VG+RL+EL+P GRYVVL N++A RW A +R+ M +
Sbjct: 385 WGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMED 444
Query: 298 AGIRKIPAYSLIE 310
G +K S IE
Sbjct: 445 RGAKKETGLSFIE 457
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 12/210 (5%)
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
L V ++ YGK G L A VF M +++ +W+AM+ + EAL +FD M
Sbjct: 143 LDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSM----LGKFEVVPIMEHYGCVVDLLG 214
+ R + + V+VL ACA VE G + + G ++E +VD+
Sbjct: 203 MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLE--TALVDMYC 260
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRY 272
+ G + +A + + D + A++G ++G + E+ RR+L+ P
Sbjct: 261 KCGCMEDAWQVFDGV-HRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFI 319
Query: 273 VVL-SNIHAGLERWNRATDLRKAMVEAGIR 301
VL + H G R + + K+M + GI+
Sbjct: 320 AVLCACTHTG--RVDEGKRVFKSMQDYGIK 347
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 185/306 (60%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+ A +F++M++R+V +WT +I+G ++GC EA +F M+ + P+
Sbjct: 480 YAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG--IVPDAT 537
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TYVS+LS+CA + G L K+VH + + +V + +G AL+ +Y K G ++ A RVF
Sbjct: 538 TYVSILSACA---STGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVF 594
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ +DV +W MI LA + R +AL +F +MK +G + N +FVAVL+AC+ A LV+
Sbjct: 595 DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD 654
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F S+ + + P MEHY C+VDLLGRAG L EAK F+ +MP EP + GALLGA
Sbjct: 655 EGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGA 714
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C +G +++ + L+L+PK YV+LSNI+A W + +R M GIRK P
Sbjct: 715 CVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEP 774
Query: 305 AYSLIE 310
S IE
Sbjct: 775 GRSWIE 780
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 14/305 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YVK G +D A L+F+ M++R+V+SWT +I G G EA F M +
Sbjct: 71 LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI-- 128
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TYVS+L++ A + G L K+VH + + + L + +G AL+ +Y K G ++ A
Sbjct: 129 PNSYTYVSILNANA---SAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 185
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV +D+ +W MI LA + R +EA +F +M+ G N T++++L A A
Sbjct: 186 RVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAIT 245
Query: 181 QLVEL-GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L ++ H GK + + ++ + + G + +A+ M + D
Sbjct: 246 STGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWN 304
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAM 295
A++G +G HE L++Q + Y+ L N H W ++ K
Sbjct: 305 AMIGGLAQNGC---GHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361
Query: 296 VEAGI 300
VE G+
Sbjct: 362 VEVGL 366
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 37/289 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G +D A L+F+ M RDV+SW ++I G +NGC EA +F M +
Sbjct: 275 LIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-- 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY+S+L++ V+ G K+VH + + +V + +G+A + +Y + G ++ A
Sbjct: 333 PDSTTYLSLLNT---HVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA---- 176
+F + +++V TWNAMI +A +EAL +F +M+ +G + TFV +L+A
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449
Query: 177 ------------CARAQLVEL--GLELFH-------SMLGKFEVVPIMEH----YGCVVD 211
A LV+L G L H +M K ++E + ++
Sbjct: 450 EALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMIS 509
Query: 212 LLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEV 257
L + G EA M E PDA+ ++L AC GA++ EV
Sbjct: 510 GLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEV 558
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 15/283 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G +D A L+F+ + R+V +W ++I G + C EA+ +F M P+
Sbjct: 380 YIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF--PDAT 437
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+V++LS+ G E L K+VH Y + +V + +G AL+ +Y K G A +VF
Sbjct: 438 TFVNILSANVG---EEALEWVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVF 493
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV ++V TW MIS LA + EA +F +M +G+ + T+V++L+ACA +E
Sbjct: 494 DDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
E+ HS +V + +V + + G + +A+ M E D ++G
Sbjct: 554 WVKEV-HSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGG 611
Query: 245 CKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
HG A+DL V +L +P VLS HAGL
Sbjct: 612 LAQHGRGLDALDLF--VKMKLEGFKPNGYSFVAVLSACSHAGL 652
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 7/218 (3%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
+I G+ G +A+ V+ M +PNE TY+S+L +C V+ L GK++H +
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGG--QPNEITYLSILKACCSPVS---LKWGKKIHAH 55
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
I+++ V + TAL+++Y K G ++ A +F MV ++V +W MI LA R +EA
Sbjct: 56 IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
F +M+ +G N T+V++L A A A +E E+ HS + + +V
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEV-HSHAVNAGLALDLRVGNALVH 174
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ ++G + +A+ M E D ++G HG
Sbjct: 175 MYAKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHG 211
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+V+ GDM++A +F+ M KRD+VSW S++ G+ + GC + M V V+
Sbjct: 306 MVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVK 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS++S G N G L G+ VHG ++R ++ F+ +ALID+Y K G +ERA
Sbjct: 366 PDRVTMVSLIS---GAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK+ KDV W +MI+ LA + ++AL +F M+E+G+ N +T +AVLTAC+ +
Sbjct: 423 FMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM-RSMPFEPDASVLG 239
LVE GL +F+ M KF P EHYG +VDLL RAG + EAK+ + + MP P S+ G
Sbjct: 483 GLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWG 542
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++L AC+ ++ LL+L+P+ G YV+LSNI+A + RW + R+AM G
Sbjct: 543 SILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRG 602
Query: 300 IRKIPAYSLI 309
++K YS +
Sbjct: 603 VKKTAGYSSV 612
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 8/192 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G+ A +F M DV S+ +I G+ + G EA+ ++ M+ + +
Sbjct: 172 LVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDG--IE 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
P+E T +S+L C L + + LGK VHG+I R V S + + AL+D+Y K
Sbjct: 230 PDEYTVLSLLVCCGHLSD---IRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESG 286
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTAC 177
A R F +M KD+ +WN M+ + A +FD+M ++ L + N + F C
Sbjct: 287 LAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGC 346
Query: 178 ARAQLVELGLEL 189
+ + EL E+
Sbjct: 347 DQRTVRELFYEM 358
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 10 DMDSAILLFENMLKR-DVVSWTSIINGFV--RNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++D A LLF N +V + ++I+ +N CFG ++ +M+ + V P+ T+
Sbjct: 83 NLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNECFG----LYSSMIRH--RVSPDRQTF 136
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ ++ + + L KQ+H +I+ + + L ++ +L+ Y ++G A +VF
Sbjct: 137 LYLMKASSFLSEV------KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFA 190
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M DV ++N MI A EAL ++ +M G+ +E T +++L C + L
Sbjct: 191 RMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRL 250
Query: 186 G 186
G
Sbjct: 251 G 251
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 198/314 (63%), Gaps = 11/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F+ + +RDVVS T+II+G+ + G EA+ +F+ + +R
Sbjct: 152 LLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREG--MR 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY SVL++ +GL L G+QVH ++LR ++ V + +LID+Y K G L +
Sbjct: 210 SNYVTYASVLTALSGL---AALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F SM + V +WNAM+ + + +EA+ +F MKE+ ++ + +TF+AVL+ C+
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326
Query: 180 AQLVELGLELFHSMLGK---FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ + GLE+F+ M+ + FE P +EHYGCVVDL GRAG + EA EF++ MPFEP A+
Sbjct: 327 GGMEDRGLEIFYEMVNQKDGFE--PEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA 384
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LLGAC++H V + V RRLLE++ ++ G YV+LSN++A RW+ +R+ M
Sbjct: 385 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMK 444
Query: 297 EAGIRKIPAYSLIE 310
E + K P S IE
Sbjct: 445 EKAVIKEPGRSWIE 458
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+ + M +R+VVSWT++I+G+ + G EA+ +F M+ ++ PNE T+ +VL+SC
Sbjct: 67 VLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEML--MSGTAPNEFTFATVLTSC--- 121
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G LG+Q+H +++ +F+G++L+D+Y K G + A RVF + +DV +
Sbjct: 122 TSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCT 181
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLG 195
A+IS A ++EAL +F ++ +G+R+N +T+ +VLTA + ++ G ++ H +
Sbjct: 182 AIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRA 241
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
K ++++ ++D+ + G L+ ++ SMP S L+G K H
Sbjct: 242 KLPFYVVLQN--SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK--------H 291
Query: 256 EVGRRLLEL 264
+GR +EL
Sbjct: 292 GLGREAVEL 300
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y SVL+ C +++ + G++VH ++++ V++ T LI LY K CL A RV
Sbjct: 13 YDSVLTEC---ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD 69
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++V +W AMIS + EAL +F EM G NE TF VLT+C + +L
Sbjct: 70 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 129
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ HS++ K + ++D+ +AG + EA+ +P
Sbjct: 130 GRQI-HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 183/312 (58%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G M+ A L + + ++ VVSW +II+GF EA F M MG
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG---- 510
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ TY ++L +CA LV + LGKQ+H I++ E+ ++ + L+D+Y K G ++
Sbjct: 511 VDPDNFTYATILDTCANLVT---VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 567
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F+ +D TWNAM+ A + +EAL +F+ M+ + ++ N TF+AVL AC
Sbjct: 568 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 627
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE GL FHSML + + P +EHY CVVD++GR+G +S+A E + MPFE DA +
Sbjct: 628 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 687
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
LL CKIHG V++ + +L+L+P+ YV+LSNI+A WN T LRK M
Sbjct: 688 RTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFN 747
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 748 GLKKEPGCSWIE 759
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A L+FE M+ RD VSW +II +NG + + +F M+ + +
Sbjct: 354 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG--ME 411
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E TY SVL +CAG L G ++H I+++ + L F+G ALID+Y K G +E+A
Sbjct: 412 PDEFTYGSVLKACAGW---QALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKA 468
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ + + V +WNA+IS + + +EA F +M E G+ + T+ +L CA
Sbjct: 469 EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 528
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
VELG ++ H+ + K E+ +VD+ + G + + + P
Sbjct: 529 VTVELGKQI-HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 577
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 15/228 (6%)
Query: 2 IDGYVK-NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+D Y+K N D + LF ++ ++ S+ +II G+ R+ EA+ +F+ + + +
Sbjct: 253 LDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG--LG 310
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E + +CA V +G L G QVHG +++ ++ + A++D+YGK G L A
Sbjct: 311 LDEVSLSGAXRACA--VIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEA 367
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ MV +D +WNA+I++ N E++ L +F M + G+ +E T+ +VL ACA
Sbjct: 368 CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGW 427
Query: 181 QLVELGLELFH----SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
Q + G+E+ + S +G V I ++D+ + G++ +A++
Sbjct: 428 QALNCGMEIHNRIIKSRMGLDSFVGI-----ALIDMYSKCGMMEKAEK 470
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 67/287 (23%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
+I Y+K D+ A +F+ M +RD VSW +++ G+ G G A +F M
Sbjct: 83 LIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVV 142
Query: 53 ------MGNVNLVRPNEATYVSVLSSCAGLVNE--------------------------- 79
MG + V + T+ VL SC+ L +
Sbjct: 143 ELFDFRMGRMGTVF-DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD 201
Query: 80 -------------GGLYLGK----------QVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
GGL L K Q+HG+ L+ + V +GTA +D+Y K
Sbjct: 202 MYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNN 261
Query: 117 LER-AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
L + ++F S+ ++ ++NA+I A + + EAL MF +++ GL +E++
Sbjct: 262 LSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXR 321
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
ACA + GL++ H + K + ++D+ G+ G L EA
Sbjct: 322 ACAVIKGDLEGLQV-HGLSMKSLCQSNICVANAILDMYGKCGALVEA 367
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ T+ + C+ + L GKQ H ++ E +VF+ LI +Y K L A +
Sbjct: 42 KKTFSHIFQECS---DRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFK 98
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI-------------- 168
VF M +D +WNAM+ A A +FD M G E+
Sbjct: 99 VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDR 158
Query: 169 -TFVAVLTACA 178
TF VL +C+
Sbjct: 159 TTFAVVLKSCS 169
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 191/313 (61%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK+G+M+SA LF+ + +D+V+WT +++GF +N EAI F+ M V
Sbjct: 219 LISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFG--VE 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI--VLSVFMGTALIDLYGKVGCLE 118
+E T + V+S+CA L G + ++E SV +G+ALID+Y K G +
Sbjct: 277 TDEITLIGVISACAQL---GAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVG 333
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF+ M ++V ++++MI A + R +A+ +FDEM + ++ N +TF+ VLTAC+
Sbjct: 334 DAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACS 393
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A +VE G ++F M + + P +HY C+VDLLGRAG L EA E +++MP EP V
Sbjct: 394 HAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVW 453
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC+IH + D+ L EL+P G Y++L+NI+A RWN + +RK M
Sbjct: 454 GALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTR 513
Query: 299 GIRKIPAYSLIEA 311
G+RK PA+S IE+
Sbjct: 514 GLRKNPAFSWIES 526
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 35/153 (22%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY-ILRNEIVLSVFMGTALIDLYGKVGCL 117
V P T+ ++ +C ++ G LG+Q+HG IL + +G ++ID+Y K G L
Sbjct: 142 VVPVSFTFTALFKACGAKMDVG---LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFL 198
Query: 118 ERAIRVFKSMV-------------------------------IKDVCTWNAMISSLASNS 146
E +VF M +KD+ W M+S A N+
Sbjct: 199 ECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNA 258
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ +EA++ F++M+E G+ +EIT + V++ACA+
Sbjct: 259 KPREAIMFFEKMQEFGVETDEITLIGVISACAQ 291
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--VGCLERA 120
E+ V+ L C L KQVH IL N + S ++ LI K +
Sbjct: 46 ESQIVTTLDGCKNLTQI------KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYP 99
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + + +NA+I R KE+ + M+++G+ TF A+ AC
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAK 159
Query: 181 QLVELGLELFHS--MLGKF-EVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMP 230
V LG ++ ++G F E + H G ++D+ + G L ++ MP
Sbjct: 160 MDVGLGRQIHGQTILVGGFGEDL----HVGNSMIDMYIKCGFLECGRKVFDEMP 209
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 196/310 (63%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++++A +F++M +D VSW ++I G+++NG EA+ + +M + L +
Sbjct: 312 IVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGL-K 370
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+VSVL + + L G L G ++H ++ + + V++GT LIDLY K G L A
Sbjct: 371 AIQGTFVSVLPAYSHL---GALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEA 427
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M + WNA+IS L + EAL +F M+++G++ + +TFV++L AC+ A
Sbjct: 428 MLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHA 487
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M +++VPI +HY C+ D+LGRAG L EA F+++MP +PD++V GA
Sbjct: 488 GLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGA 547
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ + L EL P++ G YV++SN++A + +W+ ++R + +
Sbjct: 548 LLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 607
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 608 QKTPGWSSIE 617
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 12/293 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A +F M RD+V+W SII+G + G A+ +F+ M G+ V
Sbjct: 210 LIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSG--VS 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
P+ T VS+ S+ A G K +H Y++R V + G A++D+Y K+ +E
Sbjct: 268 PDVLTLVSLASAIA---QGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEA 324
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A R+F SM ++D +WN +I+ N EA+ + M K +GL+A + TFV+VL A +
Sbjct: 325 AQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYS 384
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G+ + H++ K + + C++DL + G L+EA MP
Sbjct: 385 HLGALQQGMRM-HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPW 442
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGLERWNRA 288
A++ +HG + R+ + ++P H +L+ HAGL R+
Sbjct: 443 NAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRS 495
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 7/237 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G + A +F+ M +RDV +W ++++G RN EA+ +F M+G V
Sbjct: 109 LVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEG--VA 166
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SVL C L G L +H Y +++ + +F+ ALID+YGK+G LE A
Sbjct: 167 GDTVTVSSVLPMCVLL---GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEA 223
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +D+ TWN++IS + AL MF M+ G+ + +T V++ +A A+
Sbjct: 224 QCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQG 283
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
L + M ++V I+ +VD+ + + A+ SMP + S
Sbjct: 284 GDGRSAKSLHCYVMRRGWDVDDIIAG-NAIVDMYAKLSNIEAAQRMFDSMPVQDSVS 339
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 17/225 (7%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
++I F R A + ++++ RP+ T+ S++ + + Q+H
Sbjct: 37 NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS------AAQLH 90
Query: 90 GYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
LR +V SVF +L+ Y + G + A +VF M +DV WNAM+S L N+R
Sbjct: 91 ACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARA 150
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHY 206
EA+ +F M +G+ + +T +VL C V LG ++ ++ + V + E +
Sbjct: 151 AEAVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKELF 205
Query: 207 GC--VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
C ++D+ G+ G+L EA+ M D +++ C+ G
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGCEQRG 249
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 189/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + GDMD A+ LF M R+VVSWT++I+G+ R+ +GEA+ +F M ++
Sbjct: 155 MMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMM- 213
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T S+ + A L G L +G++V Y +N ++++ A++++Y K G ++ A
Sbjct: 214 PNAVTLASIFPAFANL---GALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVA 270
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF + ++++C+WN+MI LA + + L ++D+M +G +++TFV +L AC
Sbjct: 271 WKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTH 330
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+VE G +F SM F ++P +EHYGC+VDLLGRAG L EA E ++ MP +PD+ + G
Sbjct: 331 GGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWG 390
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC H V+L L L+P + G YV+LSNI+A +W+ LRK M +
Sbjct: 391 ALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSK 450
Query: 300 IRKIPAYSLIE 310
I K +S IE
Sbjct: 451 ITKSAGHSFIE 461
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 35/158 (22%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+ + S+C L + LG+ +H + +++ +F TAL+D+Y KVG LE A
Sbjct: 81 PNQHTFNFLFSACTSLSSPS---LGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELA 137
Query: 121 IRVFKSMVIKDVCTWNA-------------------------------MISSLASNSREK 149
++F M ++ V TWNA MIS + + +
Sbjct: 138 RKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYG 197
Query: 150 EALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELG 186
EAL +F M +EKG+ N +T ++ A A +E+G
Sbjct: 198 EALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIG 235
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+HGY LRN I + + L++ + L A +V + +N +I + +S+
Sbjct: 5 KQIHGYTLRNGIDQTKILIEKLLE----IPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSH 60
Query: 146 SREK-EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+ + + ++ +M N+ TF + +AC LG ++ H+ K P +
Sbjct: 61 PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLG-QMLHTHFIKSGFEPDLF 119
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
++D+ + G L A++ MP A++ G +D+ E+ R
Sbjct: 120 AATALLDMYTKVGTLELARKLFDQMPVR-GVPTWNAMMAGHARFGDMDVALELFR 173
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K +D A +F N+ + VV+W ++I G+ +NGC EA+ +F M + ++
Sbjct: 385 LISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD--IK 442
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+++ A L K +HG +R + +VF+ TALID + K G ++ A
Sbjct: 443 PDSFTLVSVITALADL---SVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTA 499
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + V TWNAMI +N +EAL +F+EM+ ++ NEITF++V+ AC+ +
Sbjct: 500 RKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHS 559
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F SM + + P M+HYG +VDLLGRAG L +A +F++ MP +P +VLGA
Sbjct: 560 GLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGA 619
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+IH V+L + L +L P G +V+L+N++A W++ +R AM + GI
Sbjct: 620 MLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGI 679
Query: 301 RKIPAYSLIE 310
+K P SL+E
Sbjct: 680 QKTPGCSLVE 689
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K ++ A +FE M +RD+VSW +++ G+ +NG A+ V M +
Sbjct: 183 VVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQ--K 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVL + A L L +G+ +HGY R V + TA++D Y K G + A
Sbjct: 241 PDSITLVSVLPAVADL---KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M ++V +WN MI A N +EA F +M ++G+ ++ + L ACA
Sbjct: 298 RLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANL 357
Query: 181 QLVELG 186
+E G
Sbjct: 358 GDLERG 363
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K G + SA L+F+ M R+VVSW ++I+G+ +NG EA F M+ V
Sbjct: 284 MLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG--VE 341
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + + L +CA L G L G+ VH + +I V + +LI +Y K ++ A
Sbjct: 342 PTNVSMMGALHACANL---GDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF ++ K V TWNAMI A N EAL +F EM+ ++ + T V+V+TA A
Sbjct: 399 ASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + K + A +FE + + V + +++ G+ +N +A+ ++ M + +
Sbjct: 82 LISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPV 141
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ TY+ LS L G+++HG ++ N ++F TA+++LY K +E A
Sbjct: 142 VYDFTYLLQLSG-----ENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDA 196
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+ M +D+ +WN +++ A N + A+ + +M+E G + + IT V+VL A A
Sbjct: 197 YKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADL 256
Query: 181 QLVELG 186
+ + +G
Sbjct: 257 KALRIG 262
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 192/314 (61%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GY GDM++ +F++M +R+V SW +I G+ +NG E + FK M+ ++V
Sbjct: 127 VLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVV- 185
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGY---ILRNEIVLSVFMGTALIDLYGKVGCL 117
PN+AT VLS+CA L G GK VH Y + N++ ++V ALID+YGK G +
Sbjct: 186 PNDATMTLVLSACAKL---GAFDFGKWVHKYGETLGYNKVDVNV--KNALIDMYGKCGAI 240
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A+ VFK + +D+ +WN MI+ LA++ EAL +F EMK G+ +++TFV VL AC
Sbjct: 241 EIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCAC 300
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LVE GL F+SM F ++P +EH GCVVDLL RAG L++A EF+ MP + DA +
Sbjct: 301 KHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVI 360
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGA K++ VD+ L++L+P++ +V+LSNI+ R++ A L+ AM +
Sbjct: 361 WATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRD 420
Query: 298 AGIRKIPAYSLIEA 311
G +K S IE
Sbjct: 421 TGFKKEAGVSWIET 434
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 54/264 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY+ N D+ SA F+ +RD+V W ++I+G++ G EA +F M
Sbjct: 65 MINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQM-------- 116
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
C V +++ Y +G +E
Sbjct: 117 -----------PCR-------------------------DVMSWNTVLEGYANIGDMEAC 140
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
RVF M ++V +WN +I A N R E L F M ++G + N+ T VL+ACA+
Sbjct: 141 ERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAK 200
Query: 180 AQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G + + LG +V +++ ++D+ G+ G + A E + + D
Sbjct: 201 LGAFDFGKWVHKYGETLGYNKVDVNVKN--ALIDMYGKCGAIEIAMEVFKGIK-RRDLIS 257
Query: 238 LGALLGACKIHG----AVDLCHEV 257
++ HG A++L HE+
Sbjct: 258 WNTMINGLAAHGHGTEALNLFHEM 281
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GY GDM++ +F+ ML+R+V SW +I G+ +NG E + FK M+ + V
Sbjct: 124 VLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMV-DEGSVF 182
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGY---ILRNEIVLSVFMGTALIDLYGKVGCL 117
PN+AT VLS+CA L G GK+VH Y + N++ ++V ALID+YGK G +
Sbjct: 183 PNDATLTLVLSACAKL---GAFDFGKRVHKYGENLGYNKVDVNV--KNALIDMYGKCGAI 237
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A+ VFK + +D+ +WN MI+ LA++ EAL +F EMK G+ +++TFV VL AC
Sbjct: 238 EIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCAC 297
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LVE GL F+SM F + P +EH GCVVDLL RAG L++A EF+ MP + DA +
Sbjct: 298 KHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVI 357
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGA K++ VD + L++L+P++ +V+LSNI+ R++ A L+ AM +
Sbjct: 358 WATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRD 417
Query: 298 AGIRKIPAYSLIEA 311
G +K S IE
Sbjct: 418 TGFKKEAGISWIET 431
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 114/277 (41%), Gaps = 63/277 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY+ N D+ SA F+ +RD+V W +++ G++ G EA +F M
Sbjct: 62 MINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQM-------- 113
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
C V +++ Y +G +E
Sbjct: 114 -----------PCR-------------------------DVMSWNTVLEGYANIGDMEAC 137
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
RVF M+ ++V +WN +I A N R E L F M ++G + N+ T VL+ACA+
Sbjct: 138 ERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAK 197
Query: 180 AQLVELG--LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G + + LG +V +++ ++D+ G+ G + A E + + D
Sbjct: 198 LGAFDFGKRVHKYGENLGYNKVDVNVKN--ALIDMYGKCGAIEIAMEVFKGIK-RRDLIS 254
Query: 238 LGALLGACKIHG----AVDLCHEVGRRLLELQPKHCG 270
++ HG A+DL HE+ K+CG
Sbjct: 255 WNTMINGLAAHGHGTEALDLFHEM---------KNCG 282
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G+M++A LF + +DV+SW +I G+ + EA+ +F+ M+ +
Sbjct: 236 LIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE--S 293
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + +G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 294 PNDVTMLSILHACAHL---GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIE 350
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ K + WNAMI A + R A +F M++ ++ ++ITFV +L+AC+
Sbjct: 351 AAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACS 410
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 411 HAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIW 470
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + + L +++P + G YV+LSNI+A RWN +R + +
Sbjct: 471 CSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDK 530
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 531 GMKKVPGCSSIE 542
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 146/307 (47%), Gaps = 47/307 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY G ++SA +F+ + +DVVSW ++I+G+V G + EA+ +FK MM VR
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN--VR 192
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+ A G + LG+QVH +I + ++ + ALID Y K G +E A
Sbjct: 193 PDESTMVTVISASA---RSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 250 CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309
Query: 181 QLVELGL-------------------------------------ELFHSMLGKFEVVPIM 203
+++G ++F+SML K +P
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHK--SLPAW 367
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL-- 261
+ GRA + MR +PD LL AC G +DL + R +
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427
Query: 262 -LELQPK 267
++ PK
Sbjct: 428 NYKITPK 434
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 39/241 (16%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 16 AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMI-SLGLL-PNSYTFPFLLKSC 73
Query: 74 AGL-VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY--------------------- 111
A L ++ GL Q+HG++L+ L +++ T+LI +Y
Sbjct: 74 AKLKASKEGL----QIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129
Query: 112 ----------GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
G +E A +F + +KDV +WNAMIS KEAL +F EM +
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
+R +E T V V++A AR+ +ELG ++ HS + ++ ++D + G +
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQV-HSWIADHGFGSNLKIVNALIDFYSKCGEMET 248
Query: 222 A 222
A
Sbjct: 249 A 249
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 187/302 (61%), Gaps = 5/302 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +++A +F M+K+D+V W+++I+G+ + EA+ +F N M ++ ++
Sbjct: 295 MVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLF-NEMQSLG-IK 352
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +SV+++CA L G L K +H ++ +N ++ + ALI++Y K G LERA
Sbjct: 353 PDQVTMLSVITACAHL---GALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERA 409
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K+V +W MIS+ A + AL F +M+++ + N ITFV VL AC+ A
Sbjct: 410 RRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHA 469
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F+SM+ + + P HYGC+VDL GRA LL EA E + +MP P+ + G+
Sbjct: 470 GLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGS 529
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC++HG ++L +RLLEL P H G +V LSNI+A RW +RK M GI
Sbjct: 530 LMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGI 589
Query: 301 RK 302
K
Sbjct: 590 SK 591
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 41/259 (15%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + A L+F+ M RDVV+W+ +I+G+ ++G F +A+ +F+ M N N V P+E
Sbjct: 167 YAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEM-KNYN-VEPDEM 224
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG------------ 112
+VLS+C G L GK +H +I+ N IV+ + +AL+ +Y
Sbjct: 225 MLSTVLSACG---RAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLF 281
Query: 113 -------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
K+G +E A VF MV KD+ W+AMIS A + +EAL
Sbjct: 282 EKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALN 341
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYGCVVD 211
+F+EM+ G++ +++T ++V+TACA ++ + LF G +PI +++
Sbjct: 342 LFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPI---NNALIE 398
Query: 212 LLGRAGLLSEAKEFMRSMP 230
+ + G L A+ MP
Sbjct: 399 MYAKCGSLERARRIFDKMP 417
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G ++HG + F+ T L+ +Y G + A +F M +DV TW+ MI
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
+ +AL++F+EMK + +E+ VL+AC RA + G ++ H + + +V
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG-KMIHDFIMENNIV 255
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 42/216 (19%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL-IDLYGKVGCLERAIRV 123
T S LSS L + KQVH ILR+++ S + L I L+ A+ V
Sbjct: 25 TLFSALSSATSLTHL------KQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSV 78
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F + + N + L+ + ++ L++++ M+ +GL + +F +L A +R + +
Sbjct: 79 FNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSL 138
Query: 184 ELGLELFHSMLGK--FEVVPIMEH-----------------------------YGCVVDL 212
GLE+ H + K F+ P ++ + ++D
Sbjct: 139 VEGLEI-HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDG 197
Query: 213 LGRAGLLSEAK---EFMRSMPFEPDASVLGALLGAC 245
++GL ++A E M++ EPD +L +L AC
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSAC 233
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 183/312 (58%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G M+ A L + + ++ VVSW +II+GF EA F M MG
Sbjct: 518 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG---- 573
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ TY ++L +CA LV + LGKQ+H I++ E+ ++ + L+D+Y K G ++
Sbjct: 574 VDPDNFTYATILDTCANLVT---VELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 630
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F+ +D TWNAM+ A + +EAL +F+ M+ + ++ N TF+AVL AC
Sbjct: 631 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 690
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE GL FHSML + + P +EHY CVVD++GR+G +S+A E + MPFE DA +
Sbjct: 691 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 750
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
LL CKIHG V++ + +L+L+P+ YV+LSNI+A WN T LRK M
Sbjct: 751 RTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFN 810
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 811 GLKKEPGCSWIE 822
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A L+FE M+ RD VSW +II +NG + + +F M+ + +
Sbjct: 417 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG--ME 474
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E TY SVL +CAG L G ++H I+++ + L F+G ALID+Y K G +E+A
Sbjct: 475 PDEFTYGSVLKACAGW---QALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKA 531
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ + + V +WNA+IS + + +EA F +M E G+ + T+ +L CA
Sbjct: 532 EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 591
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
VELG ++ H+ + K E+ +VD+ + G + + + P
Sbjct: 592 VTVELGKQI-HAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 640
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 12/233 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ GY GD+ A LF+ M +RDVVSW S+I+G++ NG + I VF M MG V
Sbjct: 114 MLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF- 172
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ T+ VL SC+ L + GG G Q+HG ++ V G+AL+D+Y K L+
Sbjct: 173 ---DRTTFAVVLKSCSSLEDHGG---GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+I+ F SM K+ +W+A+I+ N + L +F EM++ G+ ++ TF +V +CA
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286
Query: 179 RAQLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG +L H++ F ++ +D+ + LS+A++ S+P
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQKLFNSLP 337
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 6/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +D +I F +M +++ VSW++II G V+N + +FK M V
Sbjct: 215 LLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAG--VG 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T+ SV SCAGL L LG Q+HG+ L+ + V +GTA +D+Y K L A
Sbjct: 273 VSQSTFASVFRSCAGL---SALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDA 329
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F S+ ++ ++NA+I A + + EAL MF +++ GL +E++ ACA
Sbjct: 330 QKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVI 389
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ GL++ H + K + ++D+ G+ G L EA
Sbjct: 390 KGDLEGLQV-HGLSMKSLCQSNICVANAILDMYGKCGALVEA 430
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 14/227 (6%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y+K ++ A LF ++ ++ S+ +II G+ R+ EA+ +F+ + + +
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG--LGL 374
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+E + +CA V +G L G QVHG +++ ++ + A++D+YGK G L A
Sbjct: 375 DEVSLSGAFRACA--VIKGDLE-GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 431
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ MV +D +WNA+I++ N E++ L +F M + G+ +E T+ +VL ACA Q
Sbjct: 432 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQ 491
Query: 182 LVELGLELFH----SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+ G+E+ + S LG V I ++D+ + G++ +A++
Sbjct: 492 ALNCGMEIHNRIIKSRLGLDSFVGI-----ALIDMYSKCGMMEKAEK 533
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ T+ + C+ + L GKQ H ++ E +VF+ LI +Y K LE A +
Sbjct: 42 KKTFSHIFQECS---DRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFK 98
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
VF M +D +WNAM+ A A +FD M E+
Sbjct: 99 VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPER 137
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + +F+ M ++D +SW S+I + ++G GEA+ VF M+ +V VR
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG-VR 1350
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T +VL +CA + G L GK +H +++ ++ +V +GT++ID+Y K G +E A
Sbjct: 1351 YNAVTLSAVLLACA---HAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 1407
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F M K+V +W AM++ + R KEAL +F +M G++ N ITFV+VL AC+ A
Sbjct: 1408 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 1467
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F++M K+++ P +EHYGC+VDL GRAG L+EA ++ M +PD V G+
Sbjct: 1468 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH VDL ++L EL P +CG YV+LSN++A RW +R M +
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 1587
Query: 301 RKIPAYSLIE 310
K P +SL+E
Sbjct: 1588 VKPPGFSLVE 1597
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 136/222 (61%), Gaps = 5/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G + GD+ A +F+ + ++VVSWT++ING++RN EA+ +FK M +
Sbjct: 197 VISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN--IF 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS++ +C + G L LG+ +H Y ++N I + V++GTALID+Y K G ++ A
Sbjct: 255 PNEYTMVSLIKACTEM---GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDA 311
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF++M K + TWN+MI+SL + +EAL +F EM+ ++ + ITF+ VL AC
Sbjct: 312 IEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHI 371
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ V+ G F M + + PI EHY C+ +L R+ L EA
Sbjct: 372 KNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 30/319 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------G 54
+ID Y K G + A LF+ + R+VVSWTS+I G+V+N A+ +FK+ +
Sbjct: 1183 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 1242
Query: 55 NVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV 114
+ N V + VSVLS+C+ + +G + + VHG++++ S+ +G L+D Y K
Sbjct: 1243 DGNNVPLDSVVMVSVLSACSRVSGKG---ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC 1299
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAV 173
G + +VF M KD +WN+MI+ A + EAL +F M + G+R N +T AV
Sbjct: 1300 GQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAV 1359
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSM 229
L ACA A + G + H + K + +E+ CV +D+ + G + AK+ M
Sbjct: 1360 LLACAHAGALRAG-KCIHDQVIKMD----LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 1414
Query: 230 PFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL-- 282
E + A++ +HG A+D+ +++ R ++P + VL+ HAGL
Sbjct: 1415 K-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR--AGVKPNYITFVSVLAACSHAGLVE 1471
Query: 283 ERWNRATDLR-KAMVEAGI 300
E W+ ++ K +E GI
Sbjct: 1472 EGWHWFNAMKHKYDIEPGI 1490
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 9/193 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +G + AILLF + +W II NG +A+ ++KNM+ +
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV--CQGIA 122
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ V+ +C ++ + LGK VHG +++ VF+ LID Y K G A
Sbjct: 123 ADKFTFPFVIKACTNFLS---IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +++V +W +IS L S +EA +FDE+ K N +++ A++ R
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK----NVVSWTAMINGYIRN 235
Query: 181 QLVELGLELFHSM 193
Q E LELF M
Sbjct: 236 QQPEEALELFKRM 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++ + K +V SW S+I R G EA+ F ++ + L+ P +++ + SC
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR-KLGLI-PTRSSFPCTIKSC 1152
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
+ L + L G+ H +F+ +ALID+Y K G L+ A +F + +++V
Sbjct: 1153 SALCD---LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVV 1209
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEK--------GLRANEITFVAVLTACAR 179
+W +MI+ N + AL++F + E+ + + + V+VL+AC+R
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 1263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+Q+H I+R+ + + LI LY G + AI +F + TWN +I + N
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
++AL+++ M +G+ A++ TF V+ AC ++LG ++ H L K+
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKY 154
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G++ A+ +FE + K+D+V+WTS++N F NG EA+ +F M+ N ++
Sbjct: 506 IIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKML-NAG-IQ 563
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +L + AGL + L GK++HG+++R + + + ++L+D+Y G + A
Sbjct: 564 PDSVALVGILGAIAGLSS---LTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYA 620
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF KDV W AMI++ + K+A+ +F M E G+ + ++F+A+L AC+ +
Sbjct: 621 LKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHS 680
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+ G M+ K+++ P EHY CVVDLLGR+G EA +F++SMP EP + V A
Sbjct: 681 KLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCA 740
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +L +LLEL+P + G YV++SN+ A + +WN ++R M E G+
Sbjct: 741 LLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGL 800
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 801 RKDPACSWIE 810
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN--VNLVRPN 62
Y K G + A LF+ M R V SW ++I + +G GEA+ V++ M + V P+
Sbjct: 103 YGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPD 162
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
T SVL +C EG G +VHG +++ + S + AL+ +Y K G L+ A+R
Sbjct: 163 GCTLASVLKACGA---EGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALR 219
Query: 123 VFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M +DV +WN+ IS N EAL +F M+ G N T V VL CA
Sbjct: 220 VFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELA 279
Query: 182 LVELGLELFHSML 194
+ G EL ++L
Sbjct: 280 QLNHGRELHAALL 292
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 6/188 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G +DSA+ +F + +D +SW S+++ +V+N + EAI F M+ N P+ A
Sbjct: 309 YARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNG--FNPDHA 366
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
VS+LS+ L G L G++VH Y ++ + + + L+D+Y K +E + RVF
Sbjct: 367 CIVSLLSAVGHL---GRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVF 423
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M IKD +W +I+ A +SR EA+ F +++G++ + + ++L AC+ + +
Sbjct: 424 DRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSIS 483
Query: 185 LGLELFHS 192
L L+ HS
Sbjct: 484 L-LKQVHS 490
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 138/272 (50%), Gaps = 14/272 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K ++ + +F+ M +D VSWT+II + ++ + EAI F+ V
Sbjct: 406 LMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVD 465
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P S+L +C+GL + + L KQVH Y +RN + L + + +ID+YG+ G + A
Sbjct: 466 P--MMMGSILEACSGLKS---ISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYA 519
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ + KD+ TW +M++ A N EA+ +F +M G++ + + V +L A A
Sbjct: 520 LNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGL 579
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ G E+ H L GKF V + +VD+ G ++ A + + D +
Sbjct: 580 SSLTKGKEI-HGFLIRGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLW 635
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKH 268
A++ A +HG + +R+LE + P H
Sbjct: 636 TAMINATGMHGHGKQAIYIFKRMLETGVSPDH 667
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 7/173 (4%)
Query: 5 YVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y K G +DSA+ +FE M RDV SW S I+G V+NG F EA+ +F+ M + N
Sbjct: 208 YAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDG--FSMNS 265
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T V VL CA L L G+++H +L+ ++ AL+ +Y + G ++ A+RV
Sbjct: 266 YTTVGVLQVCAELAQ---LNHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRV 321
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
F+ + KD +WN+M+S N EA+ F EM + G + V++L+A
Sbjct: 322 FREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 85 GKQVHGYILRNEIV---LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
G+Q+H + + + + F+ T L+ +YGK G L A R+F M + V +WNA+I +
Sbjct: 74 GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133
Query: 142 LASNSREKEALVMFDEMKEK----GLRANEITFVAVLTAC 177
S+ EA+ ++ M+ G + T +VL AC
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKAC 173
>gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera]
gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 195/325 (60%), Gaps = 18/325 (5%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG----CFG-EAICVFKNMMGNV 56
I Y N D+ A L+F+ M KR V+W ++I G+ C+ +A+ +F+ M+ +
Sbjct: 148 IHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLFRAMLVDA 207
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKV 114
V+P + T V VLS+ + L G L G VHGYI + + + VF+GT L+D+Y K
Sbjct: 208 CGVKPTDTTMVCVLSAASQL---GVLETGVGVHGYIEKTVLAPANDVFVGTGLVDMYSKC 264
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
GCL A+ +F M ++V TW AMI+ LA + R KEAL + DEM G++ N +TF ++
Sbjct: 265 GCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVTFTSLF 324
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC A LVE GL+LFHSM KF V P ++HYGC+VDLLGRAG L EA +F+R MP EPD
Sbjct: 325 SACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPD 384
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH--------CGRYVVLSNIHAGLERWN 286
A + +LL ACK+H V + EVG+ LL+LQP+ ++ LSN++A ERW
Sbjct: 385 AILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYASAERWE 444
Query: 287 RATDLRKAMVEAGIRKIPAYSLIEA 311
+R+AM GI P S ++
Sbjct: 445 DVETVREAMKVKGIETKPGCSSVQT 469
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + SA+ +F M +R+V++WT++I G R+G EA+ + M+ V+
Sbjct: 257 LVDMYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYG--VK 314
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+ S+ S+C AGLV EG + H + + + ++DL G+ G L+
Sbjct: 315 PNAVTFTSLFSACCHAGLVEEG----LQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLK 370
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A + M ++ D W +++S+
Sbjct: 371 EAYDFVRGMPVEPDAILWRSLLSA 394
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103
+I VF + + LV ++ TY+ L +CA L+ G+Q+H IL+ + +V +
Sbjct: 88 SSILVFADWVSREALVF-DDFTYIFALGACA---RSPSLWEGRQIHARILKQGVWSNVLV 143
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE-----KEALVMFDEM 158
T I Y + A VF M + TWNAMI+ S + ++ALV+F M
Sbjct: 144 QTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLFRAM 203
Query: 159 --KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLG 214
G++ + T V VL+A ++ ++E G+ + H + K + P + + +VD+
Sbjct: 204 LVDACGVKPTDTTMVCVLSAASQLGVLETGVGV-HGYIEKTVLAPANDVFVGTGLVDMYS 262
Query: 215 RAGLLSEA 222
+ G L A
Sbjct: 263 KCGCLGSA 270
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + A +F+ + R++VSW ++I G+ N F + I VF+ M + +
Sbjct: 183 LVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREM--QIAGAK 240
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P E T V VL +CA L G L G+ + YI N + L+VF+GTALID+Y K G ++ A
Sbjct: 241 PVEVTMVGVLLACAHL---GALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEA 297
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++FK+M +K+V TWN +IS A N R + AL F M + + +E+TF+ VL AC
Sbjct: 298 EKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQ 357
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G F SM +F + P +EHYGC+VDLLGRAG L EA++ +++M +PD +
Sbjct: 358 GLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRE 417
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG + L ++LLEL+P + YV+L+N++A +RW++ ++R+ M +
Sbjct: 418 LLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRV 477
Query: 301 RKIPAYSLIE 310
RK+P S IE
Sbjct: 478 RKVPGCSSIE 487
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 116/236 (49%), Gaps = 19/236 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENM---LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN 57
+ID V + ++ LLF + D+ + S+I + + ++ ++ M N
Sbjct: 81 LIDFSVSSHGFAASALLFTQFYGFIDSDLCN--SMIRCYTDSNKHLHSVFIYTQMWKNG- 137
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+ P+ +T+ +VL S A L + LGK +H I++ +V++ TAL+++YG +
Sbjct: 138 -IFPDSSTFPTVLKSVAQLCRQE---LGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSV 193
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +VF + +++ +WNA+I+ N ++ + +F EM+ G + E+T V VL AC
Sbjct: 194 SDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLAC 253
Query: 178 ARAQLVELGL----ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A + G + H+ L V ++D+ + G++ EA++ ++M
Sbjct: 254 AHLGALNQGRWIDDYIDHNRLRLNVFVGT-----ALIDMYAKCGVVDEAEKIFKAM 304
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK +D+A LFE ++R+VV WT++I+GF + EAI +F+ M+G L
Sbjct: 252 IIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESIL-- 309
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++L SC+ L G L GK VHGY++RN I + T+ ID Y + G ++ A
Sbjct: 310 PNHCTLAAILVSCSSL---GSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMA 366
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++V +W++MI++ N +EAL FD MK + L N +TFV++L+AC+ +
Sbjct: 367 RKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHS 426
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G + F SM + +VP EHY C+VDLLGRAG + EAK F+ +MP +P AS GA
Sbjct: 427 GNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGA 486
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH VDL E+ +LL ++P YV+LSNI+A W +R M G
Sbjct: 487 LLSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMGIKGY 546
Query: 301 RKIPAYSLIE 310
RK S E
Sbjct: 547 RKPMGLSATE 556
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 39/285 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G M+SA +F+ M R+ V W ++ G+++ E +F +M + L
Sbjct: 150 LVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFY-LMRDTGLAL 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ T + ++ +C G V+ G GK VHG +R + S ++ ++ID+Y K L+
Sbjct: 209 -DALTLICLVKAC-GNVSAGKE--GKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDN 264
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA- 178
A ++F++ V ++V W +IS A R EA+ +F +M + + N T A+L +C+
Sbjct: 265 ARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSS 324
Query: 179 ----------RAQLVELGLEL----FHSMLGK-------------FEVVPIME--HYGCV 209
++ G+E+ F S + F+++P + +
Sbjct: 325 LGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSM 384
Query: 210 VDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAV 251
++ G GL EA + M+S P++ +LL AC G V
Sbjct: 385 INAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNV 429
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 93/181 (51%), Gaps = 9/181 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGC--FGEAICVFKNMMGNV 56
+ + Y+++ +D A F+ + KR+ SW +I++G+ ++ + + + ++ M +
Sbjct: 45 LTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHC 104
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+ V + V + +C GL G L G +HG ++N + ++ +L+++Y + G
Sbjct: 105 DGV--DSFNLVFAIKACVGL---GLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGT 159
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF M +++ W ++ S++ E +F M++ GL + +T + ++ A
Sbjct: 160 MESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKA 219
Query: 177 C 177
C
Sbjct: 220 C 220
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 197/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G++ +F+ M R+V SWT++ING+V NG EA+ +F++M ++ +
Sbjct: 196 LIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQV-IDGIE 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + VSVL +C+ GL G+Q+HG+ +R E+ V + ALID+Y K G L+ A
Sbjct: 255 PNRVSLVSVLPACSSF---SGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSA 311
Query: 121 IRVFKS-MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF+ + KD +W++MIS + + +EA++++D+M + G+R + IT V +L+AC+R
Sbjct: 312 RRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSR 371
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV GL ++ S++ + + P +E + C+VD+LGRAG L A +F+++MP EP SV G
Sbjct: 372 SGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWG 431
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL+ IHG +++ R L++L+P++ YV +SN++A RW+ ++R+ M +
Sbjct: 432 ALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKR 491
Query: 300 IRKIPAYSLIE 310
+RK+P S I
Sbjct: 492 LRKVPGCSWIS 502
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 40/267 (14%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
L+F+++ ++V W S+ING+ +N + EA +F M + V P++ T LS+ +
Sbjct: 79 LVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSD--VLPDDFT----LSTLSK 132
Query: 76 LVNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI----- 129
+ +E G L+ GK +HG +R V + +++ +Y K G E + +VF M I
Sbjct: 133 VSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS 192
Query: 130 --------------------------KDVCTWNAMISSLASNSREKEALVMFDEMKE-KG 162
++V +W AMI+ N EAL +F +M+ G
Sbjct: 193 WNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDG 252
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ N ++ V+VL AC+ + G ++ H + E+ + ++D+ + G L A
Sbjct: 253 IEPNRVSLVSVLPACSSFSGLLSGRQI-HGFAVRKELNNEVSLCNALIDMYSKCGSLDSA 311
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHG 249
+ DA +++ +HG
Sbjct: 312 RRVFEDDSLCKDAISWSSMISGYGLHG 338
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 185/312 (59%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G + A LF+ M RD VV W ++I G+ +N + +AI VF+ MM
Sbjct: 133 LIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFR-MMQQFGG 191
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V PN+ T VSVL +CA L G L LGK + G+I R E+ L +F+G AL D+Y K GC+
Sbjct: 192 VVPNDVTLVSVLPACAHL---GALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCIT 248
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +DV +W+ +I LA EA F EM + G + N++ F+ +LTAC
Sbjct: 249 EARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACT 308
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ GL F++M ++ V P +EHYGCVVDLL RAG L +A++ + SMP +P+ +
Sbjct: 309 HAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIW 368
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLG C+I+ V + +LEL H G YV L+N+++ + R + A R M E
Sbjct: 369 GALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMREN 428
Query: 299 GIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 429 GVLKTPGCSWIE 440
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + ++ A L+F ++ ++ + + + +N + AI F + + + N
Sbjct: 30 LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN 89
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T+ SVL +CAGL + + G+++H + + ++F+ +LID+Y K G L A
Sbjct: 90 PDEFTFTSVLKACAGLAH---VVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLA 146
Query: 121 IRVFKSMVIKD--VCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTAC 177
+F M ++D V WNAMI+ A N + +A+ +F M++ G+ N++T V+VL AC
Sbjct: 147 RHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPAC 206
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A ++LG + + + E+ + + D+ + G ++EA+ M
Sbjct: 207 AHLGALDLG-KWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKM 257
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G++D A LFE +DVV WT++ING+V+ F EA+ +F+ M + V+
Sbjct: 29 MVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEM--QIQRVK 86
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V++L+ CA + G L G +HGYI I + +GT+LI++Y K GC+E+A
Sbjct: 87 PDKFVLVALLTGCAQM---GALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKA 143
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+R+F + KD TW ++I LA N + +AL +F +MK+ +E+TF+ VL+AC+
Sbjct: 144 LRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHG 203
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASV 237
LVE G E F+SM + + P +EHYGC++DLLGRAG L EA+E ++ + E +
Sbjct: 204 GLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPL 263
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL AC+I+ V + V +L++++ + + +L+NI+A RW +R+ M +
Sbjct: 264 YGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTLLANIYASAGRWVDVNRVRREMKD 323
Query: 298 AGIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 324 LGVKKVPGCSSIE 336
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V T+++ Y G L++A +F+ +KDV W AMI+ + EA+ +F EM+
Sbjct: 22 NVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQ 81
Query: 160 EKGLRANEITFVAVLTACARAQLVELG 186
+ ++ ++ VA+LT CA+ +E G
Sbjct: 82 IQRVKPDKFVLVALLTGCAQMGALEQG 108
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 184/299 (61%), Gaps = 6/299 (2%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D+ IL E + + WT+II+G +NGC EA+ +++ M + N RP++AT+ SVL
Sbjct: 705 DADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEM--HRNNARPDQATFASVLR 762
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK- 130
+C+ L + G G+ +H I + G+A++D+Y K G ++ +++VF+ M K
Sbjct: 763 ACSILASLGD---GRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKN 819
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN+MI A N + AL +FDEMK +R +++TF+ VLTAC+ A V G E+F
Sbjct: 820 DVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIF 879
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
M+ +++VP ++H C++DLLGR G L EA+EF+ + FEP+A + LLGAC+IHG
Sbjct: 880 DIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGD 939
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
+L+EL+P++ YV+LSNI+A W+ +R+AM E G+RK+P S I
Sbjct: 940 DIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWI 998
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 135/259 (52%), Gaps = 8/259 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K M++A +F+ + +R++V W +++ G+ +NG + + +F M G
Sbjct: 390 LINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCG--FW 447
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E TY S+LS+CA L L +G+Q+H +I+++ ++F+ L+D+Y K G LE A
Sbjct: 448 PDEFTYTSILSACACL---ECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEA 504
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ + +D +WNA+I E EA MF M G+ +E++ ++L+ CA
Sbjct: 505 RQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANL 564
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
Q +E G E H L K + + ++D+ + G + A+ MP S+
Sbjct: 565 QALEQG-EQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAI 623
Query: 241 LLGACK--IHGAVDLCHEV 257
+ G + + A+DL E+
Sbjct: 624 IAGYAQNDLVEAIDLFQEM 642
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 132/247 (53%), Gaps = 13/247 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+++ A F + KRD+++W S+++ + R G + I F ++ N V
Sbjct: 122 IVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQ-NCG-VS 179
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY VLSSCA LV+ + LGKQVH +++ + F +LID+Y K G L A
Sbjct: 180 PNQFTYAIVLSSCARLVD---IDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDA 236
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F ++V D +W AMI+ +EAL +F++M++ GL +++ FV V+TAC
Sbjct: 237 RKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL 296
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASV 237
++ +LF M V + ++ + G EA +F ++M + S
Sbjct: 297 GRLDDACDLFVQMPNTNVVA-----WNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRST 351
Query: 238 LGALLGA 244
LG++L A
Sbjct: 352 LGSVLSA 358
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 13/225 (5%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G +D A LF M +VV+W +I+G V+ GC EAI FKNM V+ +T S
Sbjct: 297 GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTG--VKSTRSTLGS 354
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VLS+ A L L G VH ++ + +V++G++LI++Y K +E A +VF ++
Sbjct: 355 VLSAIASL---EALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALD 411
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+++ WNAM+ A N + + +F EM+ G +E T+ ++L+ACA + +E+G +
Sbjct: 412 ERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQ 471
Query: 189 LFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRS 228
L HS + K FE +E+ +VD+ + G L EA+ EF+R+
Sbjct: 472 L-HSFIIKHNFEYNLFVEN--TLVDMYAKCGALEEARQQFEFIRN 513
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A FE + RD VSW +II G+V+ EA +F+ M+ ++ +
Sbjct: 491 LVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMI--LDGIA 548
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + S+LS CA L L G+QVH +++++ + ++ G++LID+Y K G +E A
Sbjct: 549 PDEVSLASILSGCANL---QALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAA 605
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V + NA+I+ A N EA+ +F EM+ +GL +EITF ++L AC
Sbjct: 606 RYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFASLLDACTGP 664
Query: 181 QLVELGLELFHSMLGK 196
+ LG ++ H ++ K
Sbjct: 665 YKLNLGRQI-HCLIQK 679
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
++D Y K GDM S++ +FE M K DV+SW S+I GF +NG A+ +F M +
Sbjct: 795 VVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEM--KHTRI 852
Query: 60 RPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
RP++ T++ VL++C AG V+EG VH Y +IV + +IDL G+ G L
Sbjct: 853 RPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSY----KIVPRLDHCACMIDLLGRWGFL 908
Query: 118 ERA 120
+ A
Sbjct: 909 KEA 911
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K +H L+ +G+A++DLY K G +E A + F + +D+ WN+++S +
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG-KFEVVPIME 204
++ + F ++ G+ N+ T+ VL++CAR ++LG ++ ++ FE E
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G ++D+ + G L +A++ ++ +PD A++
Sbjct: 221 --GSLIDMYSKCGSLVDARKIFDAV-VDPDTVSWTAMIA 256
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ G++ AI FE M R++VSW +++ G+V+N +A+ +F+ M+ N V+
Sbjct: 180 MVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN-VQ 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T SVL C+ L L GKQ+H + ++ + ++ +GT+L+ +Y K G L A
Sbjct: 239 PNASTLSSVLLGCSNL---SALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV WNAMIS A + KEA+ +F+ MK++G+ N ITFV VLTAC
Sbjct: 296 CILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHT 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + G++ F M + + P ++HY C+VDLL RAG L A +F+RSMPFEP S G
Sbjct: 356 GLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGT 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ ++ +L+E P+ G YV L+NI+A +W+ + +R+ M + +
Sbjct: 416 LLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTV 475
Query: 301 RKIPAYSLIE 310
K P YS IE
Sbjct: 476 VKTPGYSWIE 485
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ +GD D A LF +M RDV SW ++++G ++G EA VF M VR N
Sbjct: 90 HFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP-----VR-NSV 143
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++ +++S G G + ++ E + TA++ Y +G + +AI+ F
Sbjct: 144 SWNAMVS---GFACSGDMSTAEEWFRNAPEKE---DAVLWTAMVSGYMDIGNVVKAIKYF 197
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLV 183
++M ++++ +WNA+++ NS +AL +F M +E ++ N T +VL C+ +
Sbjct: 198 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 257
Query: 184 ELGLEL 189
G ++
Sbjct: 258 GFGKQI 263
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 198/314 (63%), Gaps = 11/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F+ + +RDVVS T+II+G+ + G EA+ +F+ + +R
Sbjct: 619 LLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREG--MR 676
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY SVL++ +GL L G+QVH ++LR ++ V + +LID+Y K G L +
Sbjct: 677 SNYVTYASVLTALSGL---AALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F SM + V +WNAM+ + + +EA+ +F MKE+ ++ + +TF+AVL+ C+
Sbjct: 734 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793
Query: 180 AQLVELGLELFHSMLGK---FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ + GLE+F+ M+ + FE P +EHYGCVVDL GRAG + EA EF++ MPFEP A+
Sbjct: 794 GGMEDRGLEIFYEMVNQKDGFE--PEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA 851
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ G+LLGAC++H V + V RRLLE++ ++ G YV+LSN++A RW+ +R+ M
Sbjct: 852 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMK 911
Query: 297 EAGIRKIPAYSLIE 310
E + K P S IE
Sbjct: 912 EKAVIKEPGRSWIE 925
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 139/249 (55%), Gaps = 16/249 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+ + M +R+VVSWT++I+G+ + G EA+ +F M+ ++ PNE T+ +VL+SC
Sbjct: 534 VLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEML--MSGTAPNEFTFATVLTSC--- 588
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G LG+Q+H +++ +F+G++L+D+Y K G + A RVF + +DV +
Sbjct: 589 TSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCT 648
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLG 195
A+IS A ++EAL +F ++ +G+R+N +T+ +VLTA + ++ G ++ H +
Sbjct: 649 AIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRA 708
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
K ++++ ++D+ + G L+ ++ SMP S L+G K H
Sbjct: 709 KLPFYVVLQN--SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSK--------H 758
Query: 256 EVGRRLLEL 264
+GR +EL
Sbjct: 759 GLGREAVEL 767
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y SVL+ C +++ + G++VH ++++ V++ T LI LY K CL A RV
Sbjct: 480 YDSVLTEC---ISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD 536
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++V +W AMIS + EAL +F EM G NE TF VLT+C + +L
Sbjct: 537 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 596
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ HS++ K + ++D+ +AG + EA+ +P
Sbjct: 597 GRQI-HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G V++GDM+ A +F+ ML+RD+VSW ++I V+ F EAI +F+ M +
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG--IP 461
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V + S+C L G L L K V YI +N+I + + +GTAL+D++ + G A
Sbjct: 462 GDRVTMVGIASACGYL---GALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSA 518
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M +DV W A I +A + A+ +F+EM E+ ++ +++ FVA+LTAC+
Sbjct: 519 MHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHG 578
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G +LF SM + P + HYGC+VDLLGRAGLL EA + ++SMP EP+ V G+
Sbjct: 579 GSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGS 638
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L H +L +L P+ G +V+LSNI+A +W +R M E G+
Sbjct: 639 LLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGV 698
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 699 QKVPGSSSIE 708
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 5/179 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G +D LF+ ML+R+VVSWTS+ING+ EA+ +F M G V
Sbjct: 171 LIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQM-GEAG-VE 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V V+S+CA L + L LGK+V YI + LS M AL+D+Y K G + A
Sbjct: 229 PNPVTMVCVISACAKLKD---LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAA 285
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++F K++ +N ++S+ + + LV+ DEM +KG R +++T ++ + ACA+
Sbjct: 286 RQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQ 344
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 9/193 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K GD+ +A +F+ +++V + +I++ +V + + + + M+ R
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGP--R 329
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +S +++CA L G L +GK H Y+LRN + + A+ID+Y K G E A
Sbjct: 330 PDKVTMLSTIAACAQL---GDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAA 386
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M K V TWN++I+ L + + A +FDEM E+ L +++ ++ A +
Sbjct: 387 CKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDL----VSWNTMIGALVQV 442
Query: 181 QLVELGLELFHSM 193
+ E +ELF M
Sbjct: 443 SMFEEAIELFREM 455
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ +I G+ G +AI ++ M+ V + P++ T+ +LS+C+ ++ L G QV
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQML--VMGIVPDKYTFPFLLSACSKIL---ALSEGVQV 152
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG +L+ + +F+ +LI Y + G ++ ++F M+ ++V +W ++I+ +
Sbjct: 153 HGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLS 212
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL--FHSMLGKFEVVPIMEHY 206
KEA+ +F +M E G+ N +T V V++ACA+ + +ELG ++ + S LG E+ IM
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELG-MELSTIM--V 269
Query: 207 GCVVDLLGRAGLLSEAKEF 225
+VD+ + G + A++
Sbjct: 270 NALVDMYMKCGDICAARQI 288
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDM+ A +LF+ M +++VSWT I++GF G EAI +F M ++
Sbjct: 255 MVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQM--EKACLK 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +S+L++CA G L LG+++H I N + + AL+D+Y K G L A
Sbjct: 313 LDNGTVMSILAACA---ESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIA 369
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV +WNAM+ LA + +AL +F MKE+G N++T + VL AC A
Sbjct: 370 YDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHA 429
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G+ F +M + +VP +EHYGC+VDLLGR G L EA +R+MP P+A + G
Sbjct: 430 GLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGT 489
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H AV+L EV L+EL+P G + +LSNI+A WN + R M G
Sbjct: 490 LLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGT 549
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 550 KKPSGASSIE 559
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 23/289 (7%)
Query: 1 MIDGYVKNGD--MDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN 57
+ID Y K G + +A LF +M +RDVVSW S+I+G + G + EA VF M
Sbjct: 159 LIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEM----- 213
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGC 116
+ ++ ++L +G + +GK + L +E+ +V + ++ Y K G
Sbjct: 214 -PEKDGISWNTML--------DGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGD 264
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +F M +K++ +W ++S A +EA+ +FD+M++ L+ + T +++L A
Sbjct: 265 MEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA + L+ LG E H+ + E +VD+ + G L+ A + + D
Sbjct: 325 CAESGLLGLG-EKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIK-NKDVV 382
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVL-SNIHAGL 282
A+L +HG E+ +R+ E P VL + HAGL
Sbjct: 383 SWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGL 431
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 9/226 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H IL++ + + +F+ LI + + A F + +V +N MI + + N
Sbjct: 37 KQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHN 96
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
S+ +A F M+ G A+ TF +L C + + +E H+ + KF + +
Sbjct: 97 SQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPV-IESVHAQIEKFGFMSDVFV 155
Query: 206 YGCVVDLLGRAGL--LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
++D + G +S AK+ SM D +++ G +E R++ +
Sbjct: 156 PNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGG----LYEEARKVFD 211
Query: 264 LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
P+ G + + + G + + D K E R + ++S +
Sbjct: 212 EMPEKDG--ISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTM 255
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 128/353 (36%), Gaps = 85/353 (24%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F + +V + ++I N +A F M + + + T+ +L C G V
Sbjct: 75 FNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYA--DNFTFPFLLKVCTGNV 132
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--------------------- 116
L + + VH I + + VF+ +LID Y K G
Sbjct: 133 ---WLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVS 189
Query: 117 -------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
E A +VF M KD +WN M+ + +A +FDEM E+
Sbjct: 190 WNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPER-- 247
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
N +++ ++ +A +E+ LF M V + + +V GL EA
Sbjct: 248 --NVVSWSTMVLGYCKAGDMEMARMLFDKM-----PVKNLVSWTIIVSGFAEKGLAREAI 300
Query: 224 EFMRSMP---FEPDASVLGALLGAC----------KIHGAV-----DLCHEVGRRLLELQ 265
M + D + ++L AC KIH ++ E+ L+++
Sbjct: 301 SLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMY 360
Query: 266 PKHCGR----YVVLSNI-HAGLERWN-------------RATDLRKAMVEAGI 300
K CGR Y V ++I + + WN +A +L K M E G
Sbjct: 361 AK-CGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGF 412
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + +F+ M ++D +SW S+I + ++G GEA+ VF M+ +V VR
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG-VR 2223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T +VL +CA + G L GK +H +++ ++ +V +GT++ID+Y K G +E A
Sbjct: 2224 YNAVTLSAVLLACA---HAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 2280
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F M K+V +W AM++ + R KEAL +F +M G++ N ITFV+VL AC+ A
Sbjct: 2281 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 2340
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F++M K+++ P +EHYGC+VDL GRAG L+EA ++ M +PD V G+
Sbjct: 2341 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH VDL ++L EL P +CG YV+LSN++A RW +R M +
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 2460
Query: 301 RKIPAYSLIE 310
K P +SL+E
Sbjct: 2461 VKPPGFSLVE 2470
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 136/222 (61%), Gaps = 5/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G + GD+ A +F+ + ++VVSWT++ING++RN EA+ +FK M +
Sbjct: 197 VISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN--IF 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS++ +C + G L LG+ +H Y ++N I + V++GTALID+Y K G ++ A
Sbjct: 255 PNEYTMVSLIKACTEM---GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDA 311
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF++M K + TWN+MI+SL + +EAL +F EM+ ++ + ITF+ VL AC
Sbjct: 312 IEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHI 371
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ V+ G F M + + PI EHY C+ +L R+ L EA
Sbjct: 372 KNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 30/319 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------G 54
+ID Y K G + A LF+ + R+VVSWTS+I G+V+N A+ +FK+ +
Sbjct: 2056 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 2115
Query: 55 NVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV 114
+ N V + VSVLS+C+ + +G + + VHG++++ S+ +G L+D Y K
Sbjct: 2116 DGNNVPLDSVVMVSVLSACSRVSGKG---ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC 2172
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAV 173
G + +VF M KD +WN+MI+ A + EAL +F M + G+R N +T AV
Sbjct: 2173 GQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAV 2232
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSM 229
L ACA A + G + H + K + +E+ CV +D+ + G + AK+ M
Sbjct: 2233 LLACAHAGALRAG-KCIHDQVIKMD----LEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 2287
Query: 230 PFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL-- 282
E + A++ +HG A+D+ +++ R ++P + VL+ HAGL
Sbjct: 2288 K-EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR--AGVKPNYITFVSVLAACSHAGLVE 2344
Query: 283 ERWNRATDLR-KAMVEAGI 300
E W+ ++ K +E GI
Sbjct: 2345 EGWHWFNAMKHKYDIEPGI 2363
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 9/193 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +G + AILLF + +W II NG +A+ ++KNM+ +
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV--CQGIA 122
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ V+ +C ++ + LGK VHG +++ VF+ LID Y K G A
Sbjct: 123 ADKFTFPFVIKACTNFLS---IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +++V +W +IS L S +EA +FDE+ K N +++ A++ R
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK----NVVSWTAMINGYIRN 235
Query: 181 QLVELGLELFHSM 193
Q E LELF M
Sbjct: 236 QQPEEALELFKRM 248
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++ + K +V SW S+I R G EA+ F ++ + L+ P +++ + SC
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR-KLGLI-PTRSSFPCTIKSC 2025
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
+ L + L G+ H +F+ +ALID+Y K G L+ A +F + +++V
Sbjct: 2026 SALCD---LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVV 2082
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEK--------GLRANEITFVAVLTACAR 179
+W +MI+ N + AL++F + E+ + + + V+VL+AC+R
Sbjct: 2083 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR 2136
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+Q+H I+R+ + + LI LY G + AI +F + TWN +I + N
Sbjct: 44 RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
++AL+++ M +G+ A++ TF V+ AC ++LG ++ H L K+
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKY 154
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 187/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K G+++ A +F M RD VSW+++I GF NG F E+ F+ ++ +R
Sbjct: 376 MLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAE--MR 433
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + VLS+C+ G GK +HG++ ++ V + ALID+Y + G + A
Sbjct: 434 PNEVSLTGVLSACS---QSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMA 490
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+ M K + +W +MI+ LA + +EA+ +F+EM E G+ +EI+F+++L AC+
Sbjct: 491 RLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSH 550
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L++ G F M + + P +EHYGC+VDL GR+G L +A F+ MP P A V
Sbjct: 551 AGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWR 610
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG ++L +V +RL EL P + G V+LSN++A +W +RK+M+
Sbjct: 611 TLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQR 670
Query: 300 IRKIPAYSLIE 310
I+KI A+SL+E
Sbjct: 671 IKKITAWSLVE 681
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D + +++ G+ + ++ VF MM + P+ ++ V+ + A N L
Sbjct: 236 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRK-GFIFPDSFSFAFVVKAAA---NFRSLRT 291
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G Q+H L++ + +F+ T LI +YG+ GC+ A +VF M ++ WNA++++
Sbjct: 292 GFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFR 351
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+ A +FD+M L N ++ +L +A +E +F M + +V
Sbjct: 352 GNDVSGAREIFDKM----LVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDV----- 402
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDL 253
+ ++ G +E+ + R + P+ L +L AC GA +
Sbjct: 403 SWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEF 454
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K A +F+ M R+ VSW S++ + +NG EA + + +
Sbjct: 154 MVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEE 211
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + S L++CAGL+ GL+LG+ +H +R+ I ++F+ +AL+D+YGK GC+E A
Sbjct: 212 PTDFMVSSALTTCAGLL---GLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDA 268
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
++F +++ TWNAMI A + AL++FD+M G A N IT V V+T+C+R
Sbjct: 269 EQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSR 328
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L + G ELF +M +F + P EHY CVVDLLGRAG+ +A E ++ MP P SV G
Sbjct: 329 GGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 388
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG +L +L EL P+ G +V+LSN+ A RW ATD+RK M G
Sbjct: 389 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 448
Query: 300 IRKIPAYSLI 309
I+K P S +
Sbjct: 449 IKKDPGCSWV 458
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y K G + A LF M R+VV+W +++ V +G E I + + L P
Sbjct: 54 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGL--P 111
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N + + ++CAG + L LG+Q HG++++ + V + +++D YGK C +A
Sbjct: 112 NVVSACAFFNACAGAMY---LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKAR 168
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M +++ +W +M+++ A N E+EA + + G + + LT CA
Sbjct: 169 AVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLL 228
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG L H++ + + + +VD+ G+ G + +A++ P
Sbjct: 229 GLHLGRAL-HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 276
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCL 117
+RPN+ T+ S + A + G Q+H +R + + F+ A +D+Y K G L
Sbjct: 6 LRPNDFTFPSAFKAAASAPPRSTI--GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRL 63
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +F M ++V WNA++++ + R E + + ++E G N ++ A AC
Sbjct: 64 KLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNAC 123
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A A + LG E FH + K + +VD G+ +A+ M
Sbjct: 124 AGAMYLSLG-EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGM 174
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 186/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G+++ A LF M +D VSW+++I GF NG F EA F+ + V + R
Sbjct: 209 MLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ-QVGM-R 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + LS+CA + G + GK +HG+I ++ + V + AL+D Y K G + A
Sbjct: 267 PNEVSLTGALSACA---DAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMA 323
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+ M K + +W +MI+ LA + +EA+ +F EM+E G+R + I F+++L AC+
Sbjct: 324 RLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSH 383
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L+E G E F+ M + + P +EHYGC+VDL GRAG L +A EF+ MP P A +
Sbjct: 384 AGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWR 443
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC IHG V L V RL EL P + G +V+LSNI+A +W +R++M +
Sbjct: 444 TLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQR 503
Query: 300 IRKIPAYSLIE 310
+ K P +S+IE
Sbjct: 504 MNKTPGWSMIE 514
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 16/246 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A LF + DV ++I G + ++ F M L P ++ + L
Sbjct: 55 LDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEM--RRRLTAPLDSFSFAFL 112
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
A + L G Q+H + + + +F+GT L+ +Y + G + A +VF+ M
Sbjct: 113 LKAAA--SYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEP 170
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V WNA++++ K A +MF+ M + L + + +L +A +EL +LF
Sbjct: 171 NVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNV----MLAGYTKAGELELARKLF 226
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKI 247
M K +V + ++ G EA F R + P+ L L AC
Sbjct: 227 LEMPVKDDV-----SWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACAD 281
Query: 248 HGAVDL 253
GA++
Sbjct: 282 AGAIEF 287
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 193/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+M A +F+ + +D V+W ++I G+ +NG EAI +F +M RP++
Sbjct: 278 YEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSM--RQAGARPDKI 335
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VLS+CA + G L LG ++ Y L+ +V++GTAL+D+Y K G L RAI+VF
Sbjct: 336 TLVGVLSACAAV---GALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVF 392
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLV 183
+ + K+ +WNA+I LA N R +EA+ F+ M K++GLR ++ITF+ VL+AC A L+
Sbjct: 393 EKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLL 452
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F S+ +F+++P +EHY C+VDLL RAG L EA +F+ +P +PDA +LGALL
Sbjct: 453 KDGRRWFDSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLA 512
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V +++ L+P + YVV S I+A +R + + +R M E G+ KI
Sbjct: 513 ACRKCKNVEVSVRVINKIMLLEPSNSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSKI 572
Query: 304 PAYSLIE 310
P S IE
Sbjct: 573 PGCSWIE 579
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 148/295 (50%), Gaps = 18/295 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G +A +F+ +L+RDVVSW S+I + G +A +F+ M+ V
Sbjct: 172 LVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAE-GAVP 230
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VL++C + G L LG+ + ++ + + +G+AL+ +Y K G + A
Sbjct: 231 PNAVTVAVVLAACR---DAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEA 287
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF ++ KD WNA+I+ A N KEA+ +F M++ G R ++IT V VL+ACA
Sbjct: 288 RRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAV 347
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG EL L G + V + +VD+ + G L+ A + +P + +AS
Sbjct: 348 GALELGTELDRYALQRGFYSNVYVGT---ALVDMYSKCGDLTRAIQVFEKLPCKNEAS-W 403
Query: 239 GALLGACKIHGAVDLC---HEVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
AL+ +G E+ R+ L+P VLS +HAGL RW
Sbjct: 404 NALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRW 458
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 45/227 (19%)
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LR 164
+L+ +Y +G A RVF ++ +DV +WN+MI + + + +A MF M +G +
Sbjct: 171 SLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVP 230
Query: 165 ANEITFVAVLTACARAQLVELG--LELF-------------HSMLGKFE----------V 199
N +T VL AC A + LG LE + +++G +E V
Sbjct: 231 PNAVTVAVVLAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRV 290
Query: 200 VPIMEH-----YGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAV 251
+ H + ++ + G+ EA MR PD L +L AC GA+
Sbjct: 291 FDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGAL 350
Query: 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWNRATDLRKAM 295
+L E+ R L+ G Y SN++ G ++ +++ DL +A+
Sbjct: 351 ELGTELDRYALQR-----GFY---SNVYVGTALVDMYSKCGDLTRAI 389
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K A +F+ M R+ VSW S++ + +NG EA + + +
Sbjct: 261 MVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEE 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + S L++CAGL+ GL+LG+ +H +R+ I ++F+ +AL+D+YGK GC+E A
Sbjct: 319 PTDFMVSSALTTCAGLL---GLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
++F +++ TWNAMI A + AL++FD+M G A N IT V V+T+C+R
Sbjct: 376 EQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSR 435
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L + G ELF +M +F + P EHY CVVDLLGRAG+ +A E ++ MP P SV G
Sbjct: 436 GGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 495
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG +L +L EL P+ G +V+LSN+ A RW ATD+RK M G
Sbjct: 496 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 555
Query: 300 IRKIPAYSLI 309
I+K P S +
Sbjct: 556 IKKDPGCSWV 565
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y K G + A LF M R+VV+W +++ V +G E I + + L P
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGL--P 218
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N + + ++CAG + L LG+Q HG++++ + V + +++D YGK C +A
Sbjct: 219 NVVSACAFFNACAGAMY---LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKAR 275
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M +++ +W +M+++ A N E+EA + + G + + LT CA
Sbjct: 276 AVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLL 335
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG L H++ + + + +VD+ G+ G + +A++ P
Sbjct: 336 GLHLGRAL-HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VVS+T+ I+G ++G A+ F M+ + L RPN+ T+ S + A + G
Sbjct: 82 VVSYTAFISGAAQHGRPLPALSAFAGML-RLGL-RPNDFTFPSAFKAAASAPPRSTI--G 137
Query: 86 KQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
Q+H +R + + F+ A +D+Y K G L+ A +F M ++V WNA++++
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEV-VP 201
+ R E + + ++E G N ++ A ACA A + LG E FH + K FE+ V
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLG-EQFHGFVVKCGFEMDVS 256
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ +VD G+ +A+ M
Sbjct: 257 VLN---SMVDFYGKCRCAGKARAVFDGM 281
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Query: 84 LGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
LG+ H LR LS F+ L++LY K+ A S V ++ A IS
Sbjct: 33 LGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGA 92
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
A + R AL F M GLR N+ TF + A A A HS+ +F +P+
Sbjct: 93 AQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPV 152
Query: 203 MEHYGC-VVDLLGRAGLLSEAKEFMRSMP 230
C +D+ + G L A+ MP
Sbjct: 153 DPFVSCAALDMYFKTGRLKLARHLFGEMP 181
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K+G M A +F+ M RD+VSW II G+ +NG G+ F M ++V
Sbjct: 674 LISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNG-LGQTAVEFAYQMQEQDVV- 731
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ ++VS+L++C+ L GK+VH I++ ++ V +G ALI +Y K G A
Sbjct: 732 PNKFSFVSLLNACSSF---SALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEA 788
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +++ K+V TWNAMI++ A + +AL F+ M+++G++ + TF ++L+AC A
Sbjct: 789 QEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHA 848
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G ++F SM ++ V+P +EHYGC+V LLGRA EA+ + MPF PDA+V
Sbjct: 849 GLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWET 908
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG + L L+L ++ Y++LSN++A RW+ +R+ M GI
Sbjct: 909 LLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGI 968
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 969 RKEPGRSWIE 978
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + GD+ A LF M KRD++SW +II G+ R GEA+ ++K M V+
Sbjct: 371 LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG--VK 428
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T++ +LS+CA N GK +H ILR+ I + + AL+++Y + G L A
Sbjct: 429 PGRVTFLHLLSACA---NSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ +DV +WN+MI+ A + + A +F EM+ + L + ITF +VL+ C
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ +ELG ++ H + + + + ++++ R G L +A+ S+ D A
Sbjct: 546 EALELGKQI-HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTA 603
Query: 241 LLGACKIHG 249
++G C G
Sbjct: 604 MIGGCADQG 612
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A +FE RDV+SW S+I G ++G + A +F+ M +
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE--LE 529
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVLS C N L LGKQ+HG I + + L V +G ALI++Y + G L+ A
Sbjct: 530 PDNITFASVLSGCK---NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ +DV +W AMI A + +A+ +F +M+ +G R + TF ++L C +
Sbjct: 587 RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSS 646
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G ++ +L +E+ + + ++ ++G +++A+E MP
Sbjct: 647 ACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMP 695
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y++ G + A +F ++ RDV+SWT++I G G +AI +F M R
Sbjct: 573 LINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG--FR 630
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P ++T+ S+L C + L GK+V YIL + L +G ALI Y K G + A
Sbjct: 631 PVKSTFSSILKVC---TSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDA 687
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +D+ +WN +I+ A N + A+ +M+E+ + N+ +FV++L AC+
Sbjct: 688 REVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSF 747
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + H+ + K ++ + ++ + + G EA+E ++ E + A
Sbjct: 748 SALEEGKRV-HAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNA 805
Query: 241 LLGACKIHG 249
++ A HG
Sbjct: 806 MINAYAQHG 814
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK + A +F+ M +RDV+SW S+I+ + + G +A +F+ M N +
Sbjct: 68 LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ-NAGFI- 125
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY+S+L++C + L GK++H I++ + +L+ +YGK G L RA
Sbjct: 126 PNKITYISILTAC---YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA 182
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + +DV ++N M+ A + KE L +F +M +G+ +++T++ +L A
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G + H + + + + +V + R G + AK+ + + D V A
Sbjct: 243 SMLDEGKRI-HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTA-DRDVVVYNA 300
Query: 241 LLGACKIHG 249
L+ A HG
Sbjct: 301 LIAALAQHG 309
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 40/292 (13%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V+ GD+DSA F+ RDVV + ++I ++G EA + M + V N T
Sbjct: 275 VRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG--VALNRTT 332
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y+S+L++C+ L GK +H +I + V +G ALI +Y + G L +A +F
Sbjct: 333 YLSILNACS---TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY 389
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
+M +D+ +WNA+I+ A EA+ ++ +M+ +G++ +TF+ +L+ACA +
Sbjct: 390 TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---------------------- 223
G ++ H + + + ++++ R G L EA+
Sbjct: 450 G-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 224 ------------EFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ M++ EPD ++L CK A++L ++ R+ E
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 117/226 (51%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ A +F + RDVVS+ +++ + + E + +F M + + P++
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQM--SSEGISPDKV 230
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+++L + L GK++H + + + +GTAL+ + + G ++ A + F
Sbjct: 231 TYINLLDA---FTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K +DV +NA+I++LA + EA + M+ G+ N T++++L AC+ ++ +E
Sbjct: 288 KGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G +L HS + + ++ ++ + R G L +A+E +MP
Sbjct: 348 AG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 53 MGNVNLVRPNE---ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
+ N + RP E ATYV++L +C + L K++H ++ + +F+ LI+
Sbjct: 14 VSNTHQPRPTETERATYVALLQNC---TRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLIN 70
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
+Y K + A +VFK M +DV +WN++IS A +K+A +F+EM+ G N+IT
Sbjct: 71 MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130
Query: 170 FVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
++++LTAC +E G ++ HS + K ++ P +++ ++ + G+ G L A++
Sbjct: 131 YISILTACYSPAELENGKKI-HSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQ 184
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K GDM +A ++FENM +RD+VSWT+++ G+V+ F A +F +M V V
Sbjct: 365 LINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDM--KVRDVM 422
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E VS+LS+C+ L G L G+++H YI + +++ +AL+D+Y K GC++ A
Sbjct: 423 ASEMALVSLLSACSQL---GALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAA 479
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
+F M K WNAMI LAS + KEA+ +F+++ K + + + IT VL AC
Sbjct: 480 AEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTH 539
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V+ GL F+ ML +VP EHYGC+VDLLGRAGLL EA F++ MP +P+ + G
Sbjct: 540 VGMVDEGLHYFNLML-TLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWG 598
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H ++L +G+ +++L P G +V++SN+HA +W+ +R M
Sbjct: 599 SLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRR 658
Query: 300 IRKIPAYSLIE 310
+ K P +S I+
Sbjct: 659 VEKSPGHSSIQ 669
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK G M A F+ M R+ SW ++I+GFV+NG EA+ +F+ M+ + V
Sbjct: 264 LIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDG--VI 321
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+ A L G L G+ +H YI +EI + + +LI++Y K G + A
Sbjct: 322 PDVITLVSVLSTYAQL---GDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAA 378
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F++M +D+ +W AM+ + + A +FD+MK + + A+E+ V++L+AC++
Sbjct: 379 EIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQL 438
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ G E+ HS + + V M +VD+ + G + A E M
Sbjct: 439 GALDKGREI-HSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRM 486
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 8/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + ++ A +FE M +RDVVSWT +I+ F + G + + M +
Sbjct: 163 LINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEG--TK 220
Query: 61 PNEATYVSVLSSCAGL-VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PN+ T +S+LS+C + + GL++ +V Y + ++ + ALI +Y K GC+
Sbjct: 221 PNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIR----NALIGMYVKCGCMSD 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A + FK M I++ +WN +I N + KEAL MF+EM G+ + IT V+VL+ A+
Sbjct: 277 AWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQ 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ G L H+ + E+ + ++++ + G ++ A+ +M
Sbjct: 337 LGDLQQGRYL-HNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENM 385
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 7/233 (3%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG--EAICVFKNMMGNVNLVRPNE 63
V DM A +F+ M + + W +I G+ N C +A+ +F+ M + V P+
Sbjct: 64 VSRHDMPYARKVFDRMAQPTAIVWNCMIRGY--NSCHAPMDALELFRAM--RRSGVSPDN 119
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T +V S A + G G VH + R +F+ + LI+ YG +E A +V
Sbjct: 120 YTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKV 179
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F+ M +DV +W MIS+ A + L DEM+ +G + N+IT +++L+AC + + V
Sbjct: 180 FEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAV 239
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ GL ++ + + ++ + ++ ++ + + G +S+A + + MP S
Sbjct: 240 DKGLWVY-ARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKS 291
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G+++ A +F M +D VSW+++I GF NG F EA F+ + +R
Sbjct: 209 MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKG--MR 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + VLS+CA G L GK +HG+I ++ + V + AL+D Y K G + A
Sbjct: 267 PNETSLTGVLSACA---QAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMA 323
Query: 121 IRVFKS-MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+ M +++ +W +M+++LA + +EA+ +F +M+E G+R +EI F+++L AC+
Sbjct: 324 QLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSH 383
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G E F M G + + P +EHYGC+VDL GRAG L +A EF+ MP A +
Sbjct: 384 AGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWR 443
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC +HG V L +V RL EL P + +V+LSN +A +W A +R++M E
Sbjct: 444 TLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQR 503
Query: 300 IRKIPAYSLIE 310
I K P +S+IE
Sbjct: 504 ITKTPGWSMIE 514
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+ +D A LF DV ++I G + +++ F M N + P+ ++
Sbjct: 52 SDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRN-SFSPPDSFSFA 110
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
++ + A L + + +G Q+H L + + +F+GT LI +YG+ G + A +VF M
Sbjct: 111 FIVKAAANLRS---VRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEM 167
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ WNAM+++ K +FD M + L +++ +L +A +EL
Sbjct: 168 PEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNL----MSWNVMLAGYTKAGELELAR 223
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGA 244
E+F M K +V + ++ G EA F R + P+ + L +L A
Sbjct: 224 EMFLEMPMKDDV-----SWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSA 278
Query: 245 CKIHGAVDL 253
C GA++
Sbjct: 279 CAQAGALEF 287
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+ D Y K G +D A F M RD V W S+I+ F +NG AI +F+ M M
Sbjct: 456 ITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKF- 514
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
VS+ S+ + N LY GK++HGY++RN F+ + LID+Y K G L
Sbjct: 515 -----DSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLAL 569
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M K+ +WN++I++ ++ +E L ++ EM G+ + +TF+ +++AC
Sbjct: 570 AWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGH 629
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G+ FH M ++ + MEHY C+VDL GRAG + EA + ++SMPF PDA V G
Sbjct: 630 AGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWG 689
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++HG V+L R LLEL PK+ G YV+LSN+HA W +R M E G
Sbjct: 690 TLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKG 749
Query: 300 IRKIPAYSLIE 310
++KIP YS I+
Sbjct: 750 VQKIPGYSWID 760
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 11/258 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A LF M + D V+W +I G+V+NG EA +F M+ V+P+
Sbjct: 258 YSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG--VKPDSV 315
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S L S ++ G L K+VH YI+R+ + V++ +ALID+Y K G +E A ++F
Sbjct: 316 TFASFLPS---ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIF 372
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ ++ DV AMIS + +A+ F + ++G+ N +T +VL ACA ++
Sbjct: 373 QQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALK 432
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G EL H + K + I+ + D+ + G L A EF R M + D+ +++ +
Sbjct: 433 PGKEL-HCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISS 490
Query: 245 CKIHG----AVDLCHEVG 258
+G A+DL ++G
Sbjct: 491 FSQNGKPEIAIDLFRQMG 508
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y NG + A +F+ + RD + W ++ G+V++G F AI F M + ++V
Sbjct: 153 LIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMV- 211
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY +LS CA G G Q+HG ++ + + L+ +Y K G L A
Sbjct: 212 -NSVTYTCILSICA---TRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYA 267
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F +M D TWN +I+ N EA +F+ M G++ + +TF + L + +
Sbjct: 268 RKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILES 327
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ E+ HS + + V + ++D+ + G + A++ + D +V A
Sbjct: 328 GSLRHCKEV-HSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILV-DVAVCTA 385
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 386 MISGYVLHG 394
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 144/287 (50%), Gaps = 14/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD++ A +F+ + DV T++I+G+V +G +AI F+ ++ +
Sbjct: 355 LIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVT- 413
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T SVL +CA + L GK++H +IL+ + V +G+A+ D+Y K G L+ A
Sbjct: 414 -NSLTMASVLPACAAV---AALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLA 469
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +D WN+MISS + N + + A+ +F +M G + + ++ + L+A A
Sbjct: 470 YEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANL 529
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H + + ++D+ + G L+ A M + + S +
Sbjct: 530 PALYYGKEM-HGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVS-WNS 587
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
++ A HG +DL HE+ R + P H V++S HAGL
Sbjct: 588 IIAAYGNHGCPRECLDLYHEMLRA--GIHPDHVTFLVIISACGHAGL 632
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 9/249 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV G A LF + R + W +I G G F A+ + M+G+ V P++
Sbjct: 56 YVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSN--VSPDKY 113
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V+ +C GL N + L VH + +F G+ALI LY G + A RVF
Sbjct: 114 TFPYVIKACGGLNN---VPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVF 170
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ ++D WN M+ + A+ F EM+ N +T+ +L+ CA
Sbjct: 171 DELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFC 230
Query: 185 LGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G +L ++G FE P + + +V + + G L A++ +MP + D L+
Sbjct: 231 AGTQLHGLVIGSGFEFDPQVAN--TLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLIA 287
Query: 244 ACKIHGAVD 252
+G D
Sbjct: 288 GYVQNGFTD 296
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G +D A +F M R+VVSW+++I + +NG EA+ F+ MM
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L L G+ +HGYILR + + + +AL+ +YG+ G L+
Sbjct: 283 PNSVTMVSVLQACASL---AALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVG 339
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +DV +WN++ISS + ++A+ +F+EM G +TFV+VL AC+
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM + P +EHY C+VDLLGRA L EA + ++ M EP V G+
Sbjct: 400 GLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 459
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+IHG V+L RRL L+PK+ G YV+L++I+A + W+ ++K + G+
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519
Query: 301 RKIPAYSLIE 310
+K+P +E
Sbjct: 520 QKLPGRCWME 529
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 119/252 (47%), Gaps = 7/252 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G +D A +F+ KR + W ++ G E + ++ M N V
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM--NRIGVE 175
Query: 61 PNEATYVSVLSSC-AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ TY VL +C A L GK++H ++ R V++ T L+D+Y + GC++
Sbjct: 176 SDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDY 235
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTAC 177
A VF M +++V +W+AMI+ A N + EAL F EM + K N +T V+VL AC
Sbjct: 236 ASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQAC 295
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A +E G L H + + + I+ +V + GR G L + M + D
Sbjct: 296 ASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRM-HDRDVVS 353
Query: 238 LGALLGACKIHG 249
+L+ + +HG
Sbjct: 354 WNSLISSYGVHG 365
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+S +I + G +A+ V P++ TY +L C G + L G
Sbjct: 47 ISNNQLIQSLCKEGKLKQALRVLSQESS------PSQQTY-ELLILCCG--HRSSLSDGL 97
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VH +IL N F+ T LI +Y +G ++ A +VF + + WNA+ +L
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL---ELFHSML---GKFEVV 200
+E L ++ +M G+ ++ T+ VL AC ++ L + H+ L G V
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHV 217
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
IM +VD+ R G + A MP
Sbjct: 218 YIMT---TLVDMYARFGCVDYASYVFNGMP 244
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K A +F+ M R+ VSW S++ + +NG EA + + +
Sbjct: 261 MVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEE 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + S L++CAGL+ GL+LG+ +H +R+ I ++F+ +AL+D+YGK GC+E A
Sbjct: 319 PTDFMVSSALTTCAGLL---GLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
++F +++ TWNAMI A + AL++FD+M G A N IT V V+T+C+R
Sbjct: 376 EQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSR 435
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L + G ELF +M +F + P EHY CVVDLLGRAG+ +A E ++ MP P SV G
Sbjct: 436 GGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWG 495
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK+HG +L +L EL P+ G +V+LSN+ A RW ATD+RK M G
Sbjct: 496 ALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVG 555
Query: 300 IRKIPAYSLI 309
I+K P S +
Sbjct: 556 IKKDPGCSWV 565
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y K G + A LF M R+VV+W +++ V +G E I + + L P
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGL--P 218
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N + + ++CAG + L LG+Q HG++++ + V + +++D YGK C +A
Sbjct: 219 NVVSACAFFNACAGAMY---LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKAR 275
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M +++ +W +M+++ A N E+EA + + G + + LT CA
Sbjct: 276 AVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLL 335
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG L H++ + + + +VD+ G+ G + +A++ P
Sbjct: 336 GLHLGRAL-HAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 6/172 (3%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VVS+T+ I+G ++G A+ F M+ + L RPN+ T+ S + A + G
Sbjct: 82 VVSYTAFISGAAQHGRPLPALSAFAGML-RLGL-RPNDFTFPSAFKAAASAPPRSTI--G 137
Query: 86 KQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
Q+H +R + + F+ A +D+Y K G L+ A +F M ++V WNA++++
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+ R E + + ++E G N ++ A ACA A + LG E FH + K
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLG-EQFHGFVVK 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Query: 84 LGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
LG+ H LR LS F+ L++LY K+ A S V ++ A IS
Sbjct: 33 LGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGA 92
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
A + R AL F M GLR N+ TF + A A A HS+ +F +P+
Sbjct: 93 AQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPV 152
Query: 203 MEHYGC-VVDLLGRAGLLSEAKEFMRSMP 230
C +D+ + G L A+ MP
Sbjct: 153 DPFVSCAALDMYFKTGRLKLARHLFGEMP 181
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 191/308 (62%), Gaps = 6/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K G++D + LF M +R +VSW +II+ +N EA+ +F+ M + +
Sbjct: 179 MIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQM--EEHGFK 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
P+E T V++L C+ L G L +G+++H Y + +V +G +LID Y K G +E+
Sbjct: 237 PDEVTVVTMLPVCSRL---GALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEK 293
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F+ M K V +WN +I A N + + A+ +F EM+++ L+ N+ TFVAVLTAC
Sbjct: 294 AYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVH 353
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ L+E G ELF SM +E+ P +EH+GC+VDLLGR G + EA + ++SMP +P+A++ G
Sbjct: 354 SGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWG 413
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A+LGAC+ HG + L + L+ L+P + G YV+LSN+ A RW ++R+ M E
Sbjct: 414 AVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKS 473
Query: 300 IRKIPAYS 307
++K P S
Sbjct: 474 VKKAPGQS 481
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 126/301 (41%), Gaps = 42/301 (13%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF ++ + SII + F +++ +F +M + + P++ T+ +L SCA L
Sbjct: 63 LFSQSHNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNH--RIVPDQYTFAPLLKSCANL 120
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
LG+ V + R + +++LY +E A ++F M +DV WN
Sbjct: 121 CEYS---LGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWN 177
Query: 137 AMI-------------------------------SSLASNSREKEALVMFDEMKEKGLRA 165
MI S LA N R+ EAL +F +M+E G +
Sbjct: 178 LMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKP 237
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+E+T V +L C+R +E+G + K +V I ++D + G + +A
Sbjct: 238 DEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNI 297
Query: 226 MRSMPFEPDASVLGALLGAC---KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAG 281
+ M + S +LG K A+DL E+ + L+P VL+ +H+G
Sbjct: 298 FQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEY--LKPNDATFVAVLTACVHSG 355
Query: 282 L 282
L
Sbjct: 356 L 356
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 180/306 (58%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + +++SA LLF+ ++ + SW ++I+G+ +NG +AI +F+ M VRPN
Sbjct: 353 YSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCE--VRPNPV 410
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+LS+CA L G L LGK VH I R ++F+ TALID+Y K G + A R+F
Sbjct: 411 TVTSILSACAQL---GALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLF 467
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWNAMIS + EAL +F+EM + +TF++VL AC+ A LV
Sbjct: 468 SMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVR 527
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+F SM+ P+ EHY C+VDLLGRAG L +A +F+R MP EP V GALLGA
Sbjct: 528 EGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGA 587
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH +L +L EL P++ G YV+LSNI++ + + A +R + + K P
Sbjct: 588 CMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTP 647
Query: 305 AYSLIE 310
+LIE
Sbjct: 648 GCTLIE 653
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 157/308 (50%), Gaps = 17/308 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++++A LLF + + D+VS+ ++I+G+ N ++ +FK + LV +
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL-----LVSGEKV 306
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
S++ G L+L + +HG+ ++ +V + + TAL +Y ++ +E A +F
Sbjct: 307 NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF 366
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K + +WNAMIS A N ++A+ +F EM++ +R N +T ++L+ACA+ +
Sbjct: 367 DESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALS 426
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG + H ++ + + ++D+ + G ++EA+ MP E +A A++
Sbjct: 427 LG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISG 484
Query: 245 CKIHG----AVDLCHEVGRRLLELQPKHCGRYVVL-SNIHAGLERWNRATDLRKAMV-EA 298
+HG A++L +E+ + P VL + HAGL R ++ ++MV +
Sbjct: 485 YGLHGYGHEALNLFNEMLHS--RVSPTGVTFLSVLYACSHAGLVR--EGDEIFRSMVHDH 540
Query: 299 GIRKIPAY 306
G +P +
Sbjct: 541 GFEPLPEH 548
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLVRPNE 63
Y K + +A +F+ ML+RD V W ++++G V+N CF EAI +F +M+ G + +
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF---DS 207
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T +VL A L + L LG + ++ ++ T L LY K G +E A +
Sbjct: 208 TTVAAVLPGVAELQD---LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLL 264
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
F + D+ ++NAMIS N+ + ++ +F E+ G + N + V ++
Sbjct: 265 FGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A LLF + D+ + +I F N A+ ++ ++ + L P+ TY V+
Sbjct: 58 IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPL-EPDNFTYAFVI 116
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
S + L L+ V G+ +F+G+A++ Y K + A +VF M+ +
Sbjct: 117 SGASSLGLGLLLHAHSIVAGF------GSDLFVGSAIVACYFKFSRVAAARKVFDGMLER 170
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
D WN M+S L NS EA+++F +M + G+ + T AVL A Q + LG+
Sbjct: 171 DTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGM 227
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + A LF M +++ V+W ++I+G+ +G EA+ +F M+ + V
Sbjct: 450 LIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLH--SRVS 507
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++SVL +C AGLV EG VH + E + + ++DL G+ G L+
Sbjct: 508 PTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGF--EPLPEHY--ACMVDLLGRAGNLD 563
Query: 119 RAIRVFKSMVIKD-VCTWNAMISS 141
+A+ + M ++ W A++ +
Sbjct: 564 KALDFIRKMPVEPGPPVWGALLGA 587
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 190/313 (60%), Gaps = 6/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
++ GY G ++ +F+ M +R+ S +++++G+VRN F E + +F+ +
Sbjct: 193 LVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRA 252
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
V+ N A VSVL++C + G GK +H Y+ N + + +GTALID Y K G +
Sbjct: 253 RVKFNGALLVSVLNACTVM---GAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWV 309
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +VF M++KDV TW+AMI LA N K AL +F++M++ G + NE+TFV VLTAC
Sbjct: 310 KDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTAC 369
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
L LF M K+ + P +EHYGC+VD+L R+G + +A F+ SM EPD ++
Sbjct: 370 NHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMHIEPDGAI 429
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL C +HG +L +VG+ L+E P+H GRYV+L+N++A + +W +++RK M +
Sbjct: 430 WGSLLNGCLMHGHYELGQKVGKYLIEFDPEHSGRYVLLANMYANMGKWEGVSEVRKLMKD 489
Query: 298 AGIRKIPAYSLIE 310
G+ + +S IE
Sbjct: 490 RGVVIVYGWSFIE 502
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD A LF +M ++ + SII + N F +++ VF M+ N+N +RPN T+ +
Sbjct: 72 GDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKML-NMN-IRPNSHTFTT 129
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
++ SC L + +QV +++ V+ +++I+++ K G + A +VF
Sbjct: 130 LVKSCVTLSSL------EQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESS 183
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++V W +++S S E +FD+M ++ NE + A+++ R G++
Sbjct: 184 NRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQR----NEASNSAMVSGYVRNSFFSEGVQ 239
Query: 189 LFHSMLGK 196
LF + K
Sbjct: 240 LFRELKKK 247
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKV--GCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+H + + N + ++ + ++ + G A +F M ++ +N++I+S
Sbjct: 41 KQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSIITSYT 100
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+NS+ ++L +F +M +R N TF ++ +C +E
Sbjct: 101 TNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLE 141
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/271 (46%), Positives = 172/271 (63%), Gaps = 5/271 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+VK G+++ A LF M RDVVSW S++ + + G EA+ +F M V+
Sbjct: 133 MLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVG--VK 190
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS+LS+CA L G L G +H YI N I ++ +GTAL+D+Y K G + A
Sbjct: 191 PSEATVVSLLSACAHL---GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 247
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M KDV WN +I+ +A KEA +F EMKE G+ N+ITFVA+L+AC+ A
Sbjct: 248 TQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHA 307
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G +L M + + P +EHYGCV+DLL RAGLL EA E + +MP EP+ LGA
Sbjct: 308 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGA 367
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271
LLG C+IHG +L VG+RL+ LQP GR
Sbjct: 368 LLGGCRIHGNFELGEMVGKRLINLQPCQSGR 398
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 26/289 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y D+ +A LF RD+VSW ++I+G+V+ G G A VF M V
Sbjct: 40 LIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRM------VC 93
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ ++ ++++ A G ++E + ++ +L F+ K G +E
Sbjct: 94 RDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSXNSMLXGFV---------KCGNVE 144
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M +DV +WN+M++ A + EAL +FD+M G++ +E T V++L+ACA
Sbjct: 145 DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACA 204
Query: 179 RAQLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
++ GL L H+ + + EV I+ +VD+ + G +S A + +M D
Sbjct: 205 HLGALDKGLHL-HTYINDNRIEVNSIVG--TALVDMYAKCGKISLATQVFNAME-SKDVL 260
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ I G V ++ + + E ++P +LS HAG+
Sbjct: 261 AWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGM 309
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 40/230 (17%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
A+ID Y K G + A VF MV +DV +WN MI+ A + EA +FDEM E+ L
Sbjct: 69 NAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL- 127
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
++ ++L + VE LF M + +VV C G+ +
Sbjct: 128 ---VSXNSMLXGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQ-CGKPNEALALFD 182
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVD---------------LCHEVGRRLLELQPKHC 269
M ++ +P + + +LL AC GA+D + VG L+++ K C
Sbjct: 183 QMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK-C 241
Query: 270 GRYVVLSNIHAGLER-----WN-------------RATDLRKAMVEAGIR 301
G+ + + + +E WN A L K M EAG+
Sbjct: 242 GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVE 291
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 192/339 (56%), Gaps = 32/339 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
++D YVK GD+++ +LF+NM K+ VVSWT++I G+ +NG A +F +M
Sbjct: 296 LMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAW 355
Query: 53 --------MGNVNL-------------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
N++ ++P++ T + LS+C+ L G L G H Y
Sbjct: 356 NAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQL---GALDTGMWTHNY 412
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
I ++ + L V +GTALID+Y K G + +A++VF M ++ TW A+I LA +A
Sbjct: 413 IKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDA 472
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
+ F +M + GL +EITF+ VLTAC LVE G + F M +F + P +HY C+V+
Sbjct: 473 IFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVN 532
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271
LLGRAGLL EA+E +++MP E DA V GAL AC IH + + +LL+L P G
Sbjct: 533 LLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGI 592
Query: 272 YVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
YV+L+N++ +W A ++RK M+E G+ K P S IE
Sbjct: 593 YVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIE 631
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 38/278 (13%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V G+ A +F+ RD+VSW S+ING+VR EA+ +++ M+ V+P+E T
Sbjct: 200 VSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMI--TEHVKPDEVT 257
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY--------GKV--- 114
+ V+S+CA L L LG+++H YI + + L + + AL+D+Y GKV
Sbjct: 258 MIGVVSACAQL---ESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFD 314
Query: 115 --------------------GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM 154
G L+ A ++F M K+V WNAMI S + EAL +
Sbjct: 315 NMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALEL 374
Query: 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
F EM+ ++ +++T + L+AC++ ++ G+ H+ + K + + ++D+
Sbjct: 375 FREMQWSNMKPDKVTMLHCLSACSQLGALDTGM-WTHNYIKKHNLSLDVALGTALIDMYA 433
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ G +++A + MP ++ A++G ++G V+
Sbjct: 434 KCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNVN 470
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 4/180 (2%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
++D I + N+ +V SW ++I G V + + + ++K M+ RP+ TY +
Sbjct: 102 NLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAG-CRPDNYTYSFL 160
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
CA LV Y+G ++ G +L+ +++ +I + VG A +VF +
Sbjct: 161 FKVCANLVLS---YMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCV 217
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN++I+ + +EA+ ++ +M + ++ +E+T + V++ACA+ + ++LG E+
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREI 277
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G++ A +F+ RD SW+S+I+ + ++ EA+ +++ M + +
Sbjct: 60 MIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM--HAASII 117
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+S+C+ L G L +G +VH ++ N I L + +GTALID+Y K G +E A
Sbjct: 118 PDCITLVSVVSACSDL---GALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESA 174
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M KDV TW++MI LA++ E+L +F +M +G++ N +TFV VL AC
Sbjct: 175 QRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHV 234
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F SM + P +EHYGC+VDLLGR+G + EA++ +RSM FEPD + A
Sbjct: 235 GLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRA 294
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V++ E +L L P G YV+LSNI+A W ++RK + I
Sbjct: 295 LLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNI 354
Query: 301 RKIPAYSLIE 310
++IP S IE
Sbjct: 355 QRIPGRSSIE 364
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 36/188 (19%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN----------------------- 136
VF+ ++ Y + A +VF M ++D+ +WN
Sbjct: 22 DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81
Query: 137 --------AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+MIS+ A + R KEAL ++ EM + + IT V+V++AC+ + +G E
Sbjct: 82 DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ H + + ++ ++D+ + G + A+ MP E D +++ H
Sbjct: 142 V-HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMP-EKDVQTWSSMIIGLANH 199
Query: 249 GAVDLCHE 256
G L HE
Sbjct: 200 G---LGHE 204
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY + G+++SA LLF M +D++SWT++I + +N + +A+ ++ M +N +
Sbjct: 241 MIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM--RLNGII 298
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V S+CA + G L LGK++H Y++ + L V++G+AL+D+Y K G L+ +
Sbjct: 299 PDEVTMSTVASACAHI---GALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLS 355
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + K++ WNA+I LA + ++AL MF M+ + + N +TF+++L+AC A
Sbjct: 356 LLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHA 415
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM +++ P + HYGC+VD+L ++G L+EA E ++SM FEP++ + GA
Sbjct: 416 GLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGA 475
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK+HG ++ + +L+ L+P + G Y +L +++A + W +R M E G+
Sbjct: 476 LLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGV 535
Query: 301 -RKIPAYSLIE 310
+K P S IE
Sbjct: 536 EKKYPGSSWIE 546
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 10/248 (4%)
Query: 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
+ F M +V + ++I GFV G A+ + +M+ N V P T+ S++ +C
Sbjct: 91 VFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESN-VLPTSYTFSSLVKACT 149
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
+ + LG+ VH +I + +F+ TAL+D Y K+ L A +VF M +D
Sbjct: 150 FMC---AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFA 206
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
W AM+S+LA A +F+EM E+ N T+ ++ R VE LF+ M
Sbjct: 207 WTAMLSALARVGDMDSARKLFEEMPER----NTATWNTMIDGYTRLGNVESAELLFNQMP 262
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLC 254
K +++ C L+ E MR PD + + AC GA++L
Sbjct: 263 TK-DIISWTTMITCYSQNKQYQDALAIYSE-MRLNGIIPDEVTMSTVASACAHIGALELG 320
Query: 255 HEVGRRLL 262
E+ ++
Sbjct: 321 KEIHHYVM 328
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A L+F+++ +R VSWT++I+G+V+ G G + +F M G NL R
Sbjct: 386 LVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRG-ANL-R 443
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T+ +VL + AG + L LGKQ+H +I+R+ + +VF G+ L+D+Y K G ++ A
Sbjct: 444 ADQSTFATVLKASAGFAS---LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 500
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M ++ +WNA+IS+ A N + A+ F +M + GL+ + ++ + VL AC+
Sbjct: 501 VQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHC 560
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G E F +M + + P +HY C++DLLGR G +EA++ M MPFEPD + +
Sbjct: 561 GFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSS 620
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L AC+I+ L +L ++ + YV +SNI+A +W ++KAM E G
Sbjct: 621 VLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERG 680
Query: 300 IRKIPAYSLIE 310
I+K+PAYS +E
Sbjct: 681 IKKVPAYSWVE 691
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 7/191 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK GD+ SA LF+ M R VV+WT ++ + N F EA +F+ M + L
Sbjct: 81 MISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL-- 138
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG--TALIDLYGKVGCLE 118
P+ T+ ++L C V + + QVH + ++ ++F+ L+ Y +V L+
Sbjct: 139 PDYVTFTTLLPGCNDAVPQNAV---GQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLD 195
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F+ ++ KD T+N +I+ + EA+ +F +M++ G + ++ TF VL A
Sbjct: 196 LACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVV 255
Query: 179 RAQLVELGLEL 189
LG +L
Sbjct: 256 GLHDFALGQQL 266
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 119/252 (47%), Gaps = 8/252 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + +D A +LFE +L +D V++ ++I G+ ++G + EAI +F M + + +
Sbjct: 184 LLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGH--K 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ VL + GL + LG+Q+HG + +G ++ Y K +
Sbjct: 242 PSDFTFSGVLKAVVGLHD---FALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLET 298
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M D ++N +ISS + + +E+L +F EM+ G F +L+ A
Sbjct: 299 RNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANL 358
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++G ++ H I+ +VD+ + + EA+ +S+ S
Sbjct: 359 SSLQVGRQV-HCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTAL 417
Query: 241 LLGACK--IHGA 250
+ G + +HGA
Sbjct: 418 ISGYVQKGLHGA 429
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 11/235 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPNEATYVSVLSSCA 74
LF M + D VS+ +I+ + + + E++ +F+ M MG P + ++LS A
Sbjct: 301 LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFP----FATMLSIAA 356
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
L L +G+QVH + + +G +L+D+Y K + A +FKS+ + +
Sbjct: 357 NL---SSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVS 413
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
W A+IS L +F +M+ LRA++ TF VL A A + LG +L ++
Sbjct: 414 WTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFII 473
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + G +VD+ + G + +A + MP + +A AL+ A +G
Sbjct: 474 RSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAYADNG 526
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G+M+ A +F+ ML+++V+SW+ +I+G+ ++ EA+ +F+ M+ ++
Sbjct: 245 MIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQML--CQGIK 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + V +S+C+ L G L G+ +H Y+ RN ++L + + TAL+D+Y K G + A
Sbjct: 303 PDRVSVVGAVSACSQL---GALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM ++V +WN MI L N KEAL F +M+ + + +++ F+ VL AC+ A
Sbjct: 360 RRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHA 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GL +F+ M G + + P +EHYGC+VDLLGRAG L + + ++SMP +P+A++ G+
Sbjct: 420 NLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGS 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V L V RL EL+ G YV++SNI+A + W +RK M E +
Sbjct: 480 LLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKM 539
Query: 301 RKIPAYSLIE 310
+K S+IE
Sbjct: 540 KKDIGRSVIE 549
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 44/230 (19%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G+M++A +F+ M +RDVVSW+ +I+G+ + VF + M +LV
Sbjct: 182 MLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVS 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++ID Y KVG +E A
Sbjct: 242 WN-------------------------------------------SMIDGYAKVGEMEVA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M+ K+V +W+ MI A + KEAL +F +M +G++ + ++ V ++AC++
Sbjct: 259 REIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQL 318
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G H + + ++ + +VD+ + G EA+ SMP
Sbjct: 319 GALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMP 367
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 41/220 (18%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY VL +C + GL G V G ++ VF+ LI +Y + G A VF
Sbjct: 112 TYPFVLKACGAMC---GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------------GLRANE----- 167
KD+ +WN+M+ + A MFDEM E+ G + E
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRAR 228
Query: 168 -----------ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
+++ +++ A+ +E+ E+F ML K + + ++D +
Sbjct: 229 VFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVI-----SWSIMIDGYAQH 283
Query: 217 GLLSEAKEFMRSM---PFEPD-ASVLGALLGACKIHGAVD 252
EA R M +PD SV+GA + AC GA+D
Sbjct: 284 RDSKEALNLFRQMLCQGIKPDRVSVVGA-VSACSQLGALD 322
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 87 QVHGYILRNEIVLSVFMGTALID-LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
Q+H ++ ++ F + L+D + K + A VF + + N M+ +
Sbjct: 29 QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTAC-ARAQLVELGL 187
S + AL + EM+ KGL + T+ VL AC A L+E GL
Sbjct: 89 STPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGL 131
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 192/309 (62%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G + A +F +L +DVVSW ++I G+ +NG EAI V+ M + ++
Sbjct: 136 LINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEII- 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VS+L + + + G L G ++HG +++N + VF+GT LID+YGK G L+ A
Sbjct: 194 PNQGTWVSILPAYSHV---GALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDA 250
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I +F + K+ WNAMIS + ++AL +F EMK + ++ + ITFV++L+AC+ +
Sbjct: 251 ISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHS 310
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV F+ M ++ + P ++HYGC+VDL GRAG L A F++ MP +PDAS GA
Sbjct: 311 GLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGA 370
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IHG ++L RL E+ ++ G YV+LSNI+A + +W D+R + G+
Sbjct: 371 LLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGL 430
Query: 301 RKIPAYSLI 309
RK P +S I
Sbjct: 431 RKNPGWSSI 439
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 12/282 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G + A LF++M RD SW ++I+G+ +NG EA+ + M + V+ +
Sbjct: 39 YSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEM--RLEGVKMDAI 96
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T SVL CA + G + GK +H Y++++ + +F+ ALI++Y K G L A +VF
Sbjct: 97 TVASVLPVCAQV---GDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF 153
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
++IKDV +WN +I+ A N EA+ ++ M+E + + N+ T+V++L A + +
Sbjct: 154 -GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGAL 212
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G+ + H + K + + C++D+ G+ G L +A +P ++ A++
Sbjct: 213 QQGMRI-HGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMIS 270
Query: 244 ACKIHGAVDLCHEVGRRLL--ELQPKHCGRYVVLSNI-HAGL 282
+HG + E+ R + ++P H +LS H+GL
Sbjct: 271 CYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGL 312
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G L GK++H +L+ VF+ +L+ +Y + G + A ++F M +D +WNAMI
Sbjct: 8 GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
S N EAL + DEM+ +G++ + IT +VL CA+
Sbjct: 68 SGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQ 107
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 185/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A L+F M +D++SW ++I G+ +N EA+ +F N++
Sbjct: 438 LMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLF-NLLLVEKRFS 496
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VL +CA L G+++HGYI+RN + +L+D+Y K G L A
Sbjct: 497 PDERTVACVLPACASL---SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + KEA+ +F++M++ G+ +EI+FV++L AC+ +
Sbjct: 554 RLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHS 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + ++ P +EHY C+VD+L R G LS+A F+ +MP PDA++ GA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L V ++ EL+P++ G YV+++NI+A E+W LRK + + G+
Sbjct: 674 LLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGL 733
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 734 RKNPGCSWIE 743
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 137/306 (44%), Gaps = 49/306 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+DSA ++F M R VVS+TS+I G+ R G GEA+ +F+ M +
Sbjct: 337 LLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEM--EEEGIS 394
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T +VL+ CA L++EG K+VH +I N++ +F+ AL+D+Y K G +
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEG-----KRVHEWIKENDMGFDIFVSNALMDMYAKCGSMR 449
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD-EMKEKGLRANEITFVAVLTAC 177
A VF M +KD+ +WN +I + N EAL +F+ + EK +E T VL AC
Sbjct: 450 EAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC 509
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK-------------- 223
A + G E+ H + + +VD+ + G L A+
Sbjct: 510 ASLSAFDKGREI-HGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSW 568
Query: 224 --------------------EFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
MR EPD +LL AC G VD G R
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVD----EGWRFFN 624
Query: 264 LQPKHC 269
+ C
Sbjct: 625 IMRHEC 630
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ A +F+ + + W ++N ++G F +I +FK MM + V +
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG--VEMDSY 196
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V S + L + G G+Q+HGYIL++ +G +L+ Y K ++ A +VF
Sbjct: 197 TFSCVSKSFSSLRSVNG---GEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVF 253
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +WN++I+ SN ++ L +F +M G+ + T V+V CA ++L+
Sbjct: 254 DEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLIS 313
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + H K ++D+ + G L AK R M
Sbjct: 314 LGRAV-HCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMS 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T SVL CA + L GK+V +I N VL +G+ L +Y G L+ A RVF
Sbjct: 96 TLCSVLQLCA---DSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ I+ WN +++ LA + ++ +F +M G+ + TF V + + + V
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212
Query: 185 LGLEL 189
G +L
Sbjct: 213 GGEQL 217
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 184/319 (57%), Gaps = 13/319 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV- 59
+ID Y K G++ A LF+ M +RD VSW +I++G+V+ G A +F+ M N+V
Sbjct: 156 LIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPAR-NVVS 214
Query: 60 --------RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
+ ++ T +S+LS+CA G L LGK+VH I R S + ALID+Y
Sbjct: 215 WSTMEAGLKFDDGTVISILSACA---VSGLLGLGKRVHASIERTRFKCSTPVSNALIDMY 271
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
K G LE A+ +F MV KDV +WNA+I LA + ++AL +F MK +G +++TFV
Sbjct: 272 AKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFV 331
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
VL AC A V+ GL FH+M + V P +EHYGC+VDLLGR G L EA + SMP
Sbjct: 332 GVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPL 391
Query: 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291
EP+A + G LLGAC++H A L EV RL++ + G +LSNI+A W+ ++
Sbjct: 392 EPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANI 451
Query: 292 RKAMVEAGIRKIPAYSLIE 310
R M I+K S IE
Sbjct: 452 RLRMKSTSIQKPSGGSSIE 470
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 17/249 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A+ +F + DV+ + ++I VRN A VF M + V + TY +L
Sbjct: 65 MTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSG--VCADNFTYPFLL 122
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C+G V + + + +H + + L +F+ +LID Y K+G L A R+F M +
Sbjct: 123 KACSGKV---WVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPER 179
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMK----------EKGLRANEITFVAVLTACARA 180
D +WN ++ A +F++M E GL+ ++ T +++L+ACA +
Sbjct: 180 DTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVS 239
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ LG + H+ + + ++D+ + G L A M D A
Sbjct: 240 GLLGLGKRV-HASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNA 297
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 298 IIQGLAMHG 306
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H +L+ + F+G LI + + A+ VF + DV +N +I + N
Sbjct: 34 KQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRN 93
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
S A +F EM++ G+ A+ T+ +L AC+ V + +E+ H+ + K +
Sbjct: 94 SEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRV-VEMIHAQVEKMGFCLDIFV 152
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDA----SVLGALLGACKIHGAVDLCHEVGRR 260
++D + G L EA+ MP E D ++L + A +++ A +L ++ R
Sbjct: 153 PNSLIDSYFKLGELGEARRLFDEMP-ERDTVSWNTILDGYVKAGEMNAAFELFEKMPAR 210
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 197/324 (60%), Gaps = 18/324 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF-----KNMMGN 55
+I GYVK GD+ SA +F+ M R+VVS+T++I+G+ ++G A VF ++++
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAW 285
Query: 56 VNL---------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGT 105
L V+P+E VS++S+C+ + G L L K V Y+ ++ I V +
Sbjct: 286 SALIFRVCAEWNVKPDEFIMVSLMSACSQM---GSLELAKWVDDYVRKSSIDVHRAHVIA 342
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
ALID+ K G ++RA ++F+ M +D+ ++ +M+ L+ + +A+ +F M +GL
Sbjct: 343 ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTP 402
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+++ F +LTAC+RA LV+ G F SM + +VP +HY C+VDLLGRAG L EA E
Sbjct: 403 DDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYEL 462
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285
++SMP EP A GALLGACK+H ++L V +L EL+P++ G YV+LSNI+A E+W
Sbjct: 463 LKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQW 522
Query: 286 NRATDLRKAMVEAGIRKIPAYSLI 309
+ LR M E GIRKIP S I
Sbjct: 523 LDVSLLRNKMRERGIRKIPGCSWI 546
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 120/260 (46%), Gaps = 33/260 (12%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + V W + I G+ N + +F M + + P++ TY S++ +C+ +
Sbjct: 79 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV--PDKFTYPSLIKACSKV 136
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G+ G HG +R + VF+ T+LIDLYGK G + A +VF M ++V +W
Sbjct: 137 C---GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWT 193
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMI+ AS S EA +FDEM EK N +++ A+++ + + ++F M +
Sbjct: 194 AMIAGYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-------------------FEPDASV 237
V + ++D ++G ++ A+ P +PD +
Sbjct: 250 NVV-----SFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFI 304
Query: 238 LGALLGACKIHGAVDLCHEV 257
+ +L+ AC G+++L V
Sbjct: 305 MVSLMSACSQMGSLELAKWV 324
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 33/279 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ A +F+ M +R+VVSWT++I G+ EA +F M
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM------PE 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++ +++S G V G L +++ + +V T +ID Y K G + A
Sbjct: 218 KNAVSWNAIIS---GYVKCGDLRSARKMFDEMPHRNVV----SFTTMIDGYAKSGDMASA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ +DV W+A+I F E ++ +E V++++AC++
Sbjct: 271 RFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDEFIMVSLMSACSQM 315
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+EL + + K + H ++D+ + G + A + MP + D
Sbjct: 316 GSLELA-KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP-KRDLISYC 373
Query: 240 ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLS 276
+++ IHG + R+L L P V+L+
Sbjct: 374 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 412
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+QVH I+R + F+ + + L + VF + WN I + N
Sbjct: 42 EQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 101
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+ +F MK ++ T+ +++ AC++ V+ G+ FH + V +
Sbjct: 102 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA-FHGSAVRCGVGGDVFV 160
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
++DL G+ G + A++ M
Sbjct: 161 MTSLIDLYGKCGEILCARKVFDEM 184
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G++D + LF++M+ R VSW S+I+G+VRNG EA+ +F M V
Sbjct: 203 MIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKM--QVEGFE 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VS+L++CA L G L GK VH YI RN L+V + TA+ID+Y K G +E A
Sbjct: 261 VSEFTMVSLLNACAHL---GALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ VF++ + + WN++I LA N E+EA F +++ K L+ + ++F+ VLTAC
Sbjct: 318 VEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKH 377
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ + F M+ K+E+ P ++HY C+VD+LG+AGLL EA+E ++ MP +PDA + G
Sbjct: 378 LGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWG 437
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL +C+ H V + +R+ EL P YV++SN+HA ++ A + R M E
Sbjct: 438 SLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENL 497
Query: 300 IRKIPAYSLIE 310
K P S IE
Sbjct: 498 TEKEPGCSSIE 508
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 45/260 (17%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G+++ A LF M ++ SW +II F R+ AI +F +M+ + ++P TY
Sbjct: 74 SGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDML--YSQIQPQYLTYP 131
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV---- 123
SV + A L G + G Q+HG +++ + F+ +I +Y G + A RV
Sbjct: 132 SVFKAYAQL---GHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGK 188
Query: 124 -------------------------------FKSMVIKDVCTWNAMISSLASNSREKEAL 152
F M+ + +WN+MIS N + EAL
Sbjct: 189 KLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEAL 248
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVV 210
+F++M+ +G +E T V++L ACA ++ G + H + + FE+ I+ ++
Sbjct: 249 ELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHG-KWVHDYIKRNHFELNVIV--VTAII 305
Query: 211 DLLGRAGLLSEAKEFMRSMP 230
D+ + G + A E + P
Sbjct: 306 DMYCKCGSVENAVEVFETCP 325
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+ +G ++ A+ FE M R +VSW +++ G+V+N +A+ VFK M+ + + VR
Sbjct: 184 MVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDAD-VR 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+T SVL C+ L L G+QVH + + + V GT+L+ +Y K G L+ A
Sbjct: 243 PNESTLSSVLLGCSNL---SALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M I+DV WNAMIS A + +EA+ +F++MK +G+ N ITFVAVLTAC
Sbjct: 300 CKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHT 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ + G++ F M + + ++HY C+VDLL RAG L A +RSMPF+P S G
Sbjct: 360 GMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGT 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +++ ++ +L+E P++ G YV L+NI+A +W + +R+ M + +
Sbjct: 420 LLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAV 479
Query: 301 RKIPAYSLIE 310
K P YS +E
Sbjct: 480 VKTPGYSWVE 489
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 50/293 (17%)
Query: 9 GDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
GD+ A LF M R+V SW ++++G R+G GEA VF M N ++
Sbjct: 96 GDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPAR------NSISW 149
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+++S A + G + ++ E + + TA++ Y G +E+A++ F++
Sbjct: 150 NAMVSCFA---HAGDMCAAEECFEDAPDKE---NAVLWTAMVSGYMDSGHVEKAMQFFEA 203
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVEL 185
M ++ + +WNA+++ NSR ++AL +F M ++ +R NE T +VL C+ +
Sbjct: 204 MPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGF 263
Query: 186 GLELFHSMLGKFEV-------VPIMEHYGCVVDLLGRAGLLSEAK--------------- 223
G ++ H K + ++ Y DL G L SE +
Sbjct: 264 GRQV-HQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA 322
Query: 224 ------------EFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
E M+S EP+ A+L AC G D + R+ E+
Sbjct: 323 HHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEV 375
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++++A LF+ M+ +++VSW ++I + +N A+ +F+ M V
Sbjct: 270 LIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK--VD 327
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VSV+S+CA L G L G+ +H + R + ++V + ALID+Y K G ++ A
Sbjct: 328 FDYITMVSVISACASL---GALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLA 384
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + + V +W +MI + AS+ ++AL +F MK++G++ N TF AV TAC +
Sbjct: 385 REVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHS 444
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM+ + ++P +EH C+VDLLGRAG L EA EF+ MP EPD SV GA
Sbjct: 445 GLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGA 504
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+IH ++L V +L L P+ YV++SNI+A RW A LRK M E +
Sbjct: 505 LLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEEREL 564
Query: 301 RKIPAYSLIE 310
+KIP +SL+E
Sbjct: 565 KKIPGHSLVE 574
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 138/245 (56%), Gaps = 7/245 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y ++G+ L+F M+ R++VSWT++I G+V+N F E + VF+ M+G+ +PN
Sbjct: 173 YSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG--TQPNAV 230
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL +CAGL L LGK +HGY ++ + V + ALI LYGK G +E A +F
Sbjct: 231 TLVSVLPACAGL---EFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLF 287
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV++++ +WNAMI++ N+ A+ +F M+ + + + IT V+V++ACA +
Sbjct: 288 DGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALN 347
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G H ++ + + + ++D+ + G + A+E +P S +++GA
Sbjct: 348 TG-RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS-WTSMIGA 405
Query: 245 CKIHG 249
C HG
Sbjct: 406 CASHG 410
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 6/219 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
MD A +F+ M KRDV W ++I G+ G EA+ ++ NM G + P+ T+ V+
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAG--LFPDNYTFPFVV 135
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SCA L L GK+VH I+++ VF+ ++L+ +Y + G VF MV++
Sbjct: 136 RSCAVL---SALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVR 192
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
++ +W A+I+ N KE L +F EM G + N +T V+VL ACA + + LG +L
Sbjct: 193 NIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-KLI 251
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
H K V P + ++ L G+ G + A+ M
Sbjct: 252 HGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGM 290
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVIKDVCTWNAMISSLAS 144
++H ++ N ++ + T LI + ++ A ++F M +DV WN +I A
Sbjct: 46 SRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+EAL ++ M GL + TF V+ +CA + G E+
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEV 150
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 192/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+M A +F+ + +DVV+W ++I G+ +NG EAI +F +M P++
Sbjct: 263 YEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSM--RQEGASPDKI 320
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VLS+CA + G L LG ++ Y + +V++GTAL+D+Y K G L++A++VF
Sbjct: 321 TLVGVLSACAAV---GALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVF 377
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ K+ TWNA+I LA N R EA+ F+ M+ E+GLR ++ITF+ VL+AC A L+
Sbjct: 378 GKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLL 437
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VDLL RAG L EA +F+ +P + DA +LGALL
Sbjct: 438 KDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLA 497
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A +R + + +R M E G+ KI
Sbjct: 498 ACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKI 557
Query: 304 PAYSLIE 310
P S +E
Sbjct: 558 PGCSWVE 564
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 18/295 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y GD +A +F+ + +RDVVSW +++ + R G + +F++M+ + V
Sbjct: 157 LVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMI-DEGAVA 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VL++C + G L LG+ + ++ EI + +G+AL+ +Y K G + A
Sbjct: 216 PNEVTVAVVLAACR---DAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEA 272
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KDV WNAMI+ A N KEA+ +F M+++G ++IT V VL+ACA
Sbjct: 273 RRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAV 332
Query: 181 QLVELGLEL--FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG EL + S G + V + +VD+ + G L +A + +P + +A+
Sbjct: 333 GALELGTELDAYASHRGLYGNVYVGT---ALVDMYSKCGDLDKAVQVFGKLPCKNEATWN 389
Query: 239 GALLGAC---KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
+ G + H A+ EV R L+P VLS +HAGL RW
Sbjct: 390 ALICGLAFNGRGHEAIRQ-FEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRW 443
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 58/258 (22%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG Q H + + +L+ +Y +G A RVF + +DV +WNAM+ +
Sbjct: 145 LGLQAHDHTVH-----------SLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYE 193
Query: 144 SNSREKEALVMFDEMKEKGLRA-NEITFVAVLTAC---------------ARAQLVELGL 187
+ MF +M ++G A NE+T VL AC R+ +E+G
Sbjct: 194 RAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGS 253
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVD-------------LLGRA--GLLSEAKEFMRSMPFE 232
+ +++G +E M V D + G A G+ EA SM E
Sbjct: 254 LVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQE 313
Query: 233 ---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWN 286
PD L +L AC GA++L E L+ H G Y N++ G ++ ++
Sbjct: 314 GASPDKITLVGVLSACAAVGALELGTE-----LDAYASHRGLY---GNVYVGTALVDMYS 365
Query: 287 RATDLRKAMVEAGIRKIP 304
+ DL KA+ G K+P
Sbjct: 366 KCGDLDKAVQVFG--KLP 381
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 185/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++ G +D A LF+ M +R ++SWT++INGFV+ G EA+ F+ M + V
Sbjct: 142 MIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSG--VE 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++VL++C L G L G VH Y++ + +V + + IDL+ + GC+E A
Sbjct: 200 PDYVAIIAVLAACTNL---GALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M + V +WN++I ++N E+LV F M+E+G + N +TF LTAC+
Sbjct: 257 QPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHV 316
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F +M ++ + P +EHYGC+VDL RAG L +A ++SMP +P+ V+G+
Sbjct: 317 GLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGS 376
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC+ HG L + + L + K YV+LSN++A +W A+ +R+ M G
Sbjct: 377 LLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 436
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 437 LKKQPGFSSIE 447
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+SWTS I RNG EA F +M V PN T++++LS C G + G G
Sbjct: 32 TISWTSRITLLSRNGRLAEAAKEFSDM--RFAGVEPNHITFIALLSGC-GDFSSGSESFG 88
Query: 86 KQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+HGY + RN +++ GTA+I +Y K G + +A VF M K+ TWN MI
Sbjct: 89 DLLHGYACKLGLDRNHVMV----GTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMID 144
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+ +A +FDEM E+GL I++ A++ + E L F M
Sbjct: 145 GYMRKGKIDDAYKLFDEMPERGL----ISWTAMINGFVKKGFHEEALVWFREM 193
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +FE + +RDVVS T+II G+ + G EA+ +F+ + +R
Sbjct: 193 LLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG--MR 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY S+L++ +GL L GKQ H ++LR E+ + +LID+Y K G L A
Sbjct: 251 PNYVTYASLLTALSGL---ALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYA 307
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACAR 179
R+F +M + +WNAM+ + + +E L +F M+ EK ++ + +T +AVL+ C+
Sbjct: 308 QRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 367
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ + GL ++ M+ G++ + P EHYGC+VD+LGRAG + EA EF++ MP +P A VL
Sbjct: 368 GKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 427
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC++H +VD+ VG RL+E++P++ G YV+LSN++A RW ++R M++
Sbjct: 428 GSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQK 487
Query: 299 GIRKIPAYSLIE 310
+ K P S I+
Sbjct: 488 AVTKEPGRSWIQ 499
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 146/261 (55%), Gaps = 16/261 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++ A + + M +++VVSWT++I+ + + G EA+ VF MM + +PNE
Sbjct: 96 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG--KPNEF 153
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL+SC + GL LGKQ+HG I++ +F+G++L+D+Y K G +E A +F
Sbjct: 154 TFATVLTSC---IRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIF 210
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +DV + A+I+ A ++EAL MF ++ +G+R N +T+ ++LTA + L++
Sbjct: 211 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLD 270
Query: 185 LGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G + H + + ++++ ++D+ + G LS A+ +MP S L+G
Sbjct: 271 HGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVG 328
Query: 244 ACKIHGAVDLCHEVGRRLLEL 264
K H +GR +LEL
Sbjct: 329 YSK--------HGLGREVLEL 341
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 11/247 (4%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++L++C +++ L G++VH ++++ + + ++ T L+ YGK CLE A +V
Sbjct: 54 YDALLNAC---LDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD 110
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M K+V +W AMIS + EAL +F EM + NE TF VLT+C RA + L
Sbjct: 111 EMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLAL 170
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
G ++ H ++ K+ + ++D+ +AG + EA+E +P E D A++
Sbjct: 171 GKQI-HGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP-ERDVVSCTAIIAGY 228
Query: 246 KIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
G + E+ +RL ++P YV +++ L ++A R++
Sbjct: 229 AQLGLDEEALEMFQRLQSEGMRPN----YVTYASLLTALSGLALLDHGKQAHCHVLRREL 284
Query: 304 PAYSLIE 310
P Y++++
Sbjct: 285 PFYAVLQ 291
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M A +F+ M +D V+W +++ G+ NG EA+ +F M VRP
Sbjct: 261 VDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG--VRP 318
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ LS+C L G L LG+Q + +E + + +GTALID+Y K G A
Sbjct: 319 DCYAVAGALSACTRL---GALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAW 375
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M KD+ WNAMI L EK A + +M++ G++ N+ TF+ +L +C
Sbjct: 376 VVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTG 435
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G FH+M + + P +EHYGC+VDLL RAGLL EA + + MP +A +LGAL
Sbjct: 436 LIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGAL 495
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH +L V +L+ L+P + G YV+LSNI++ RW A LR M E G+
Sbjct: 496 LGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 555
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 556 KVPACSWVE 564
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 8/226 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G + A +F+ M VSWT++I ++ G EA+ V +N N +RP+
Sbjct: 163 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG--MRPDSF 220
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VL++CA + + L G+ V + I SVF+ TA +DLY K G + +A VF
Sbjct: 221 TAVRVLTACARVAD---LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 277
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD W AM+ ASN +EAL +F M+ +G+R + L+AC R ++
Sbjct: 278 DKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALD 337
Query: 185 LGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
LG + + +F P++ ++D+ + G +EA + M
Sbjct: 338 LGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM 381
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 12/202 (5%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ T+ L S + L + L G+Q+H L+ + + T+L+ LY + G L
Sbjct: 112 LPNPSHLTFPIALKSASRLPHP--LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLL 169
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF M +W A+I++ +EA+ + G+R + T V VLTAC
Sbjct: 170 HRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC 229
Query: 178 ARAQLVELGLELFHS--MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AR + G ++ + G + V + VDL + G +++A+E M + DA
Sbjct: 230 ARVADLATGETVWRAAEQEGIAQSVFVAT---AAVDLYVKCGEMAKAREVFDKM-RDKDA 285
Query: 236 SVLGALLGACKIHG----AVDL 253
GA++G +G A+DL
Sbjct: 286 VAWGAMVGGYASNGHPREALDL 307
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M K+D++ W ++I G G A + M + V+
Sbjct: 361 LIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM--EKSGVK 418
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GL+ +G Y Y I + ++DL + G L+
Sbjct: 419 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLY----HISPRIEHYGCIVDLLSRAGLLQ 474
Query: 119 RAIRVFKSM 127
A ++ M
Sbjct: 475 EAHQLIDDM 483
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 190/311 (61%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY NG A+ LF++M + +WT++I+GFV+ G + A+ +F M + +R
Sbjct: 175 LISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEM--RRDDIR 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++A ++ + G + L LG+Q+HG+++R + S+ +G AL+D+Y K + A
Sbjct: 233 IHDAFVLATV--IGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + ++DV +W ++ A + R +E +++ M G++ NE+TFV ++ AC+ A
Sbjct: 291 REVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHA 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF SM ++ + P ++HY C +DLL R+G LSEA++ + +MP+EPD + GA
Sbjct: 351 GLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGA 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK H +C V LLEL+PK Y++LSN++A +W+ +RK M E I
Sbjct: 411 LLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEI 470
Query: 301 RKIPAYSLIEA 311
RK+P YS +EA
Sbjct: 471 RKVPGYSWVEA 481
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y ++ + A F++ +RD+ +++++ + + + + M+ + + +R
Sbjct: 42 LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSD-DALR 100
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S L+S AG + L LG+Q+H + + + ++LID+Y K G + A
Sbjct: 101 PDHFVLAS-LASAAGRLR--SLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF S+ +K+ W A+IS ASN EAL +F M GL T+ A+++ +A
Sbjct: 158 RKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALISGFVKA 213
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 200/341 (58%), Gaps = 36/341 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVR---------------------- 38
++D YVK G++ +A +LF+NM ++ +VSWT+++ G+ R
Sbjct: 300 LMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359
Query: 39 ----NGCFG-----EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
+GC EA+ +F M + + P++ T V+ LS+C+ L G L +G +H
Sbjct: 360 NAIISGCVQAKQGKEALALFHEM--QIRTIEPDKVTMVNCLSACSQL---GALDVGIWIH 414
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
YI R+++ + V +GTAL+D+Y K G + RA++VF+ + ++ TW A+I LA + +
Sbjct: 415 HYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+AL F +M G+ +EITF+ VL+AC LVE G + F M KF V P ++HY C+
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269
VDLLGRAG L EA+E +++MP DA+VLGAL AC+++G V + +LLE+ P+
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 270 GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
G YV+L+++++ + W A RK M + G+ K P SL+E
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 37/253 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F RD+V+W S+I G V+ G EAI ++K M VRPNE T +
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM--EAEKVRPNEITMIG 264
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL----------- 117
++SSC+ + + L LGK+ H YI + + ++ + AL+D+Y K G L
Sbjct: 265 MISSCSQVQD---LNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA 321
Query: 118 ERAIRVFKSMVI--------------------KDVCTWNAMISSLASNSREKEALVMFDE 157
++ + + +MV+ K V WNA+IS + KEAL +F E
Sbjct: 322 QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHE 381
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ + + +++T V L+AC++ +++G+ + H + + ++ + +VD+ + G
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHH-YIERHKLSIDVALGTALVDMYAKCG 440
Query: 218 LLSEAKEFMRSMP 230
++ A + +P
Sbjct: 441 NIARALQVFEEIP 453
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 6/257 (2%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++ ++D + + + +V SW + I G+V +G ++K M+ L +P+ TY
Sbjct: 103 ESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTL-KPDNHTY 161
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L C G + LG V G++L+ +F+ A I + G L A VF
Sbjct: 162 PLLLKGCCGQYSSC---LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNK 218
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
++D+ TWN+MI+ EA+ ++ EM+ + +R NEIT + ++++C++ Q + LG
Sbjct: 219 SRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG 278
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
E FH + + + + ++D+ + G L A+ +M + S +LG +
Sbjct: 279 KE-FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 247 IHGAVDLCHEVGRRLLE 263
G +D+ E+ ++ E
Sbjct: 338 F-GFLDVAREILYKIPE 353
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 200/341 (58%), Gaps = 36/341 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVR---------------------- 38
++D YVK G++ +A +LF+NM ++ +VSWT+++ G+ R
Sbjct: 300 LMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359
Query: 39 ----NGCFG-----EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
+GC EA+ +F M + + P++ T V+ LS+C+ L G L +G +H
Sbjct: 360 NAIISGCVQAKQGKEALALFHEM--QIRTIEPDKVTMVNCLSACSQL---GALDVGIWIH 414
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
YI R+++ + V +GTAL+D+Y K G + RA++VF+ + ++ TW A+I LA + +
Sbjct: 415 HYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQ 474
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+AL F +M G+ +EITF+ VL+AC LVE G + F M KF V P ++HY C+
Sbjct: 475 DALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCM 534
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269
VDLLGRAG L EA+E +++MP DA+VLGAL AC+++G V + +LLE+ P+
Sbjct: 535 VDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDS 594
Query: 270 GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
G YV+L+++++ + W A RK M + G+ K P SL+E
Sbjct: 595 GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 37/253 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F RD+V+W S+I G V+ G EAI ++K M VRPNE T +
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM--EAEKVRPNEITMIG 264
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL----------- 117
++SSC+ + + L LGK+ H YI + + ++ + AL+D+Y K G L
Sbjct: 265 MISSCSQVQD---LNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMA 321
Query: 118 ERAIRVFKSMVI--------------------KDVCTWNAMISSLASNSREKEALVMFDE 157
++ + + +MV+ K V WNA+IS + KEAL +F E
Sbjct: 322 QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHE 381
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ + + +++T V L+AC++ +++G+ + H + + ++ + +VD+ + G
Sbjct: 382 MQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHH-YIERHKLSIDVALGTALVDMYAKCG 440
Query: 218 LLSEAKEFMRSMP 230
++ A + +P
Sbjct: 441 NIARALQVFEEIP 453
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 6/257 (2%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++ ++D + + + +V SW + I G+V +G ++K M+ L +P+ TY
Sbjct: 103 ESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTL-KPDNHTY 161
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L C G + LG V G++L+ +F+ A I + G L A VF
Sbjct: 162 PLLLKGCCGQYSSC---LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNK 218
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
++D+ TWN+MI+ EA+ ++ EM+ + +R NEIT + ++++C++ Q + LG
Sbjct: 219 SRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG 278
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
E FH + + + + ++D+ + G L A+ +M + S +LG +
Sbjct: 279 KE-FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR 337
Query: 247 IHGAVDLCHEVGRRLLE 263
G +D+ E+ ++ E
Sbjct: 338 F-GFLDVAREILYKIPE 353
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY+K+GD DSA+ LF M D+V+W +I G+ NG F +A+ +F M+ + R
Sbjct: 198 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS--R 255
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT VSVLS+ +GL G G+ +H Y+ +N L +GT+LI++Y K GC+E A
Sbjct: 256 PSHATLVSVLSAVSGLAVLGK---GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+++ K V W A+I L + AL +F EM + GL+ N I F+ VL AC A
Sbjct: 313 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M+ ++++ P +EHYGC+VD+L RAG L EAK + +MP P+ + +
Sbjct: 373 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG + HG +D+ +R++E+ P+ G Y++LSN++A W + + +R+ M + G
Sbjct: 433 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 492
Query: 301 RKIPAYSLIE 310
RK P S +E
Sbjct: 493 RKDPGCSSVE 502
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K D+ A +F+ + +R ++ W +II +V N + I +F + V+ P+ T
Sbjct: 62 KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL---VHEYLPDNFTL 118
Query: 67 VSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V+ CA G+V EG KQ+HG L+ VF+ +L+++Y K G ++ A +VF
Sbjct: 119 PCVIKGCARLGVVQEG-----KQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVF 173
Query: 125 KSMVIKDVCTWNAMIS 140
M+ KDV WN++I
Sbjct: 174 DGMIDKDVVLWNSLID 189
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYG--KVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+Q+H + L+ I F+ + L+ LY K+ L A +F + + + WN +I
Sbjct: 33 EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
N + +V+F E+ + L N T V+ CAR +V+ G ++ H + K +
Sbjct: 93 ENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQI-HGLALKIGFGSDV 150
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSM 229
G +V++ + G + A++ M
Sbjct: 151 FVQGSLVNMYSKCGEIDCARKVFDGM 176
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 194/314 (61%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G++ +G ++ A +F M ++ ++V+WT++I+G R+G EAI F+ M
Sbjct: 408 LILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAG 467
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V+PN + + VL +C +N L +G+ +HGY++R+ + LS+ + T+L+D+Y K G
Sbjct: 468 --VKPNVVSIIGVLLAC---INLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGD 522
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++A RVF + K++ +NAMIS A + + EAL ++ +KE+GL+ + ITF L A
Sbjct: 523 RDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYA 582
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ A +V GLELF M+ + P +EHYGC+V LL R G L EA + +MP++PD
Sbjct: 583 CSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQ 642
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LG+LL AC+ H ++L + +LL+LQP + G YV +SN +A RW+ +R+ M
Sbjct: 643 ILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVKKVRQLMK 702
Query: 297 EAGIRKIPAYSLIE 310
E G+RKIP S I+
Sbjct: 703 ERGLRKIPGCSWIQ 716
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M +R+ V+W S+I G+V+NG EAI VF M V P + T S LS+ A L G
Sbjct: 160 MPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEG--VEPTQVTLSSFLSASANL---G 214
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
L GKQ H + I ++ +G++LI+ Y KVG +E A VF M+ KDV TWN +IS
Sbjct: 215 ALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLIS 274
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+AL M M+ + LR + +T +++A A + ++LG E
Sbjct: 275 GYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKE 322
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 135/252 (53%), Gaps = 17/252 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ A +F ML++DVV+W +I+G+V+ G +A+ + M + +R
Sbjct: 241 LINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLM--RLENLR 298
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---VGCL 117
+ T +++S+ A + N L LGK+ H Y +RN + V + ++++D+Y K +GC
Sbjct: 299 FDSVTLATLMSAFADMRN---LKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGC- 354
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A RVF S + KD+ WN M+++ A EAL +F +M+ + + N I++ +++
Sbjct: 355 --ARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGF 412
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRSMPFEPD 234
+ V ++F M V P + + ++ L R+G EA + M+ +P+
Sbjct: 413 LNSGQVNEAKDMFLQM-QSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPN 471
Query: 235 -ASVLGALLGAC 245
S++G LL AC
Sbjct: 472 VVSIIGVLL-AC 482
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 25/255 (9%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + +++ LF + ++V SW ++I R G + EA+ FK M N L P+
Sbjct: 57 YAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLL--PDNF 114
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+VL +C GL + +GK VHG + + K+ +
Sbjct: 115 VLPNVLKACGGL---EWIRIGKVVHGLVSCGYV--------------WKMWGGGGCKKGV 157
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M ++ WN+MI N +EA+ +F EM+E+G+ ++T + L+A A ++
Sbjct: 158 CGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQ 217
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G + H++ + +++ + GL+ +A+ M E D L+
Sbjct: 218 DGKQ-GHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRM-LEKDVVTWNLLISG 275
Query: 245 C----KIHGAVDLCH 255
++ A+++CH
Sbjct: 276 YVQIGEVDKALNMCH 290
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIRVFKSMVIKDV 132
G V E L+ G+Q+H I++ + ++ ++ T L+ Y K E + +F+ + +K+V
Sbjct: 19 GCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLKNV 78
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+W A+I +EAL+ F EM+E GL + VL AC + + +G
Sbjct: 79 FSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIG 132
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 196/311 (63%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY + G+++SA LLF M +D++SWT++I + +N + +A+ ++ M +N +
Sbjct: 338 MIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM--RLNGII 395
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V S+CA + G L LGK++H Y++ + L V++G+AL+D+Y K G L+ +
Sbjct: 396 PDEVTMSTVASACAHI---GALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLS 452
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + K++ WNA+I LA + ++AL MF M+ + + N +TF+++L+AC A
Sbjct: 453 LLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHA 512
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM +++ P + HYGC+VD+L ++G L+EA E ++SM FEP++ + GA
Sbjct: 513 GLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGA 572
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK+HG ++ + +L+ L+P + G Y +L +++A + W +R M E G+
Sbjct: 573 LLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGV 632
Query: 301 -RKIPAYSLIE 310
+K P S IE
Sbjct: 633 EKKYPGSSWIE 643
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 112/249 (44%), Gaps = 10/249 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
+ F M +V + ++I GFV G A+ + +M+ N V P T+ S++ +C
Sbjct: 187 PVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESN-VLPTSYTFSSLVKAC 245
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
+ + LG+ VH +I + +F+ TAL+D Y K+ L A +VF M +D
Sbjct: 246 TFMC---AVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAF 302
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
W AM+S+LA A +F+EM E+ N T+ ++ AR VE LF+ M
Sbjct: 303 AWTAMVSALARVGDMDSARKLFEEMPER----NTATWNTMIDGYARLGNVESAELLFNQM 358
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
K +++ C L+ E MR PD + + AC GA++L
Sbjct: 359 PTK-DIISWTTMITCYSQNKQYQDALAIYSE-MRLNGIIPDEVTMSTVASACAHIGALEL 416
Query: 254 CHEVGRRLL 262
E+ ++
Sbjct: 417 GKEIHHYVM 425
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 197/316 (62%), Gaps = 14/316 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GD++ A +LFE+M +R+ +SW++++ + R G F E +C+F+ M +
Sbjct: 186 MIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTM-- 243
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ VSVL++CA L G L G VH Y + + + TAL+D+Y K GC+E A
Sbjct: 244 PNESVLVSVLTACAHL---GALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ + KD WNAMIS +A N ++L +F++M G + E TFVAVLTAC A
Sbjct: 301 LSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHA 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
+LV+ GL+LF M + V P +EHY C+VDL+ RAG+L+EA++F+ DA+V
Sbjct: 361 RLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANV 420
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH--AGLERWN-RATDLRKA 294
GA+LGAC+ +G +++ + V ++L ++ CG +V+ N++ AG W+ A +R+
Sbjct: 421 WGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAG---WDMEAKRVRRL 477
Query: 295 MVEAGIRKIPAYSLIE 310
+ EAG++K P S+IE
Sbjct: 478 ISEAGMKKKPGCSIIE 493
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 40/269 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A L+F+N+ R++ + S+I G+V + AI + +M+ N L+ N T+ ++ +C
Sbjct: 65 ACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDML-NYGLL-ANNYTFPPLIKAC 122
Query: 74 AGLVNEGGLYLGKQVHGYIL-----RNEIVLS--------------------------VF 102
L + L +G VH +++ + V+S V
Sbjct: 123 TTLGSSSKL-IGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVV 181
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ TA+ID YGK+G +E A +F+ M ++ +W+A++++ + KE L +F M+E G
Sbjct: 182 LWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAG 241
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLS 220
NE V+VLTACA + GL + HS + F+ PI+ +VD+ + G +
Sbjct: 242 TMPNESVLVSVLTACAHLGALAQGLWV-HSYAKQCNFDSNPILA--TALVDMYSKCGCVE 298
Query: 221 EAKEFMRSMPFEPDASVLGALLGACKIHG 249
A + +P DA A++ ++G
Sbjct: 299 SALSTFQGIP-NKDAGAWNAMISGVAMNG 326
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M A +F+ M +D V+W +++ G+ NG EA+ +F M VRP
Sbjct: 214 VDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG--VRP 271
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ LS+C L G L LG+Q + +E + + +GTALID+Y K G A
Sbjct: 272 DCYAVAGALSACTRL---GALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAW 328
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M KD+ WNAMI L EK A + +M++ G++ N+ TF+ +L +C
Sbjct: 329 VVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTG 388
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G FH+M + + P +EHYGC+VDLL RAGLL EA + + MP +A +LGAL
Sbjct: 389 LIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGAL 448
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH +L V +L+ L+P + G YV+LSNI++ RW A LR M E G+
Sbjct: 449 LGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVE 508
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 509 KVPACSWVE 517
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 8/226 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G + A +F+ M VSWT++I ++ G EA+ V +N N +RP+
Sbjct: 116 YARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG--MRPDSF 173
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VL++CA + + L G+ V + I SVF+ TA +DLY K G + +A VF
Sbjct: 174 TAVRVLTACARVAD---LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 230
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD W AM+ ASN +EAL +F M+ +G+R + L+AC R ++
Sbjct: 231 DKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALD 290
Query: 185 LGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
LG + + +F P++ ++D+ + G +EA + M
Sbjct: 291 LGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCGSTAEAWVVFQQM 334
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ T+ L S + L + L G+Q+H L+ + + T+L+ LY + G L
Sbjct: 65 LPNPSHLTFPIALKSASRLPHP--LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLL 122
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF M +W A+I++ +EA+ + G+R + T V VLTAC
Sbjct: 123 HRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC 182
Query: 178 ARAQLVELGLELFHS--MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AR + G ++ + G + V + VDL + G +++A+E M + DA
Sbjct: 183 ARVADLATGETVWRAAEQEGIAQSVFVAT---AAVDLYVKCGEMAKAREVFDKM-RDKDA 238
Query: 236 SVLGALLGACKIHG 249
GA++G +G
Sbjct: 239 VAWGAMVGGYASNG 252
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M K+D++ W ++I G G A + M + V+
Sbjct: 314 LIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM--EKSGVK 371
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GL+ +G Y Y I + ++DL + G L+
Sbjct: 372 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLY----HISPRIEHYGCIVDLLSRAGLLQ 427
Query: 119 RAIRVFKSM 127
A ++ M
Sbjct: 428 EAHQLIDDM 436
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+ G +D A +F++M +D SW+++I G+ +NG EA+ +F++MM V+ +
Sbjct: 163 MISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMM--VSHIL 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEA VS+LS+C L G L+ G+ +H YI + +++S + TALID+Y K G +E
Sbjct: 221 PNEAALVSLLSACGQL---GTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKSGSIECG 277
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ M +DV TW MIS+ A + + +FDEM G+R N++ FVA+L+AC+ A
Sbjct: 278 YGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSACSHA 337
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G + F M F + P +EHYGC+VDLLGRAGLL++A++ + SMP +P++ + G+
Sbjct: 338 GCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSMPKQPNSIIWGS 397
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ H + L+EL+P R+ + + A A +RK + E +
Sbjct: 398 LLGACRTHNDLKRGTWAFENLMELEPTSGDRHKLAGLMFANAGEKEEAAKIRKMIHEKEM 457
Query: 301 RKIPAYSLIE 310
S IE
Sbjct: 458 VTTCGSSFIE 467
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 59/293 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YV + A +FE + DV + ++I G M N
Sbjct: 52 LLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLT---------------MDNF---- 92
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
TY VL +C+ L + GKQVH I++ IV + ++LI +Y G ++ A
Sbjct: 93 ----TYTFVLKACSHL---KAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDA 145
Query: 121 IRV-------------------------------FKSMVIKDVCTWNAMISSLASNSREK 149
RV F M KD +W+A+I+ N
Sbjct: 146 ERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHT 205
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F +M + NE V++L+AC + + G H+ + K V+ + +
Sbjct: 206 EALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQG-RWIHAYIDKTRVLMSTKLTTAL 264
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262
+D+ ++G + + M D G ++ A IHG C ++ +L
Sbjct: 265 IDMYAKSGSIECGYGLFQKMA-RRDVVTWGVMISAFAIHGHASKCFQLFDEML 316
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A LF+ M +R+ V+W ++I G+ N F +AI F+ M+ + +P+E T V VL
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG--AQPSERTVVVVL 197
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
S+C+ L G GK +H +I N + L+VF+GTALID+Y K G + +VF+ + K
Sbjct: 198 SACSHL---GAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREK 254
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V TWN +IS A N + AL F M + + +E+TF+ VL AC LV G F
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQF 314
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
SM +F + P +EHYGC+VDLLGRAGLL EA E ++SM EPD + ALL AC++HG
Sbjct: 315 MSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
L + +RL+EL+P + YV+LSNI++ RW LR M GIRK+P S IE
Sbjct: 375 TKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIE 434
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +T+ +VL + A L + G +GK +HG +++ + V+ TAL+ LY + A
Sbjct: 87 PDSSTFPAVLKATAQLCDTG---VGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDA 143
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F M ++ TWNA+I+ N + +A+ F M G + +E T V VL+AC+
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACS 201
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + +FE + +++V +W +I+G+ NG A+ F M+ + +
Sbjct: 231 LIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML--MENFK 288
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T++ VL +C GLV EG + L+ I ++DL G+ G LE
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIE----HYGCMVDLLGRAGLLE 344
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
A+ + +SM I+ D W A++
Sbjct: 345 EALELIQSMSIEPDPIIWRALL 366
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD++ A +F+ + +++ SW +II G V+ G EAI ++++M V+
Sbjct: 269 LIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQS--VK 326
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V+VLS+CAGL G L LG++VH Y+ RN + L+V + TAL+D+Y K G ++ A
Sbjct: 327 PNEITLVNVLSACAGL---GALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDA 383
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F KDV WNAMI LA + +++L +F +M G++ N++TF+ VL+AC +
Sbjct: 384 CLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHS 443
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM K + P +EHY C+VDLLGRAG L EA E +++M PD+ + GA
Sbjct: 444 GLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGA 503
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L ++ ++ Q + G ++LSNI+A RW +R+ + E I
Sbjct: 504 LLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRI 563
Query: 301 RKIPAYSLIE 310
+K S +E
Sbjct: 564 KKPSGCSWVE 573
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 150/251 (59%), Gaps = 8/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I GYV+ G ++ A LFE M ++R+VV WT++ING+ + G F E + +F+ M+ + + V
Sbjct: 165 IISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEV 224
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PN AT V +LS+C+ L N +G+ + +I N+I L+ + TALID+Y K G +E+
Sbjct: 225 QPNAATMVCLLSACSTLCN---YEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEK 281
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A R+F + K++ +WNA+I+ +EA+ ++ MK + ++ NEIT V VL+ACA
Sbjct: 282 AWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAG 341
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA-KEFMRSMPFEPDASVL 238
+ELG E+ H LG+ + + +VD+ + G + +A F+++ E D ++
Sbjct: 342 LGALELGREV-HLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTS--EKDVALW 398
Query: 239 GALLGACKIHG 249
A++ HG
Sbjct: 399 NAMILGLAYHG 409
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 10/185 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A + + SW S+I + +G ++ ++ M+ + +P+ T+ VL
Sbjct: 43 IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSS--TKPSNFTFPFVL 100
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C+ L G + G+Q+H ++LR +F+ +LID+Y K L+ A + M +
Sbjct: 101 KACSTL---GSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR 157
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-AQLVELGLEL 189
D +WN++IS + ++A +F+EM +R N + + A++ + VE+ L L
Sbjct: 158 DEVSWNSIISGYVQWGQVEKARDLFEEMP---MRRNVVCWTAMINGYGKEGDFVEM-LSL 213
Query: 190 FHSML 194
F ML
Sbjct: 214 FRQML 218
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 176/282 (62%), Gaps = 5/282 (1%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
SWTS+I G+V+ G EAI +F M V+ NE T V+VL++CA L G L LG +
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKM--EEAGVKCNEVTVVAVLAACADL---GALDLGMR 248
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H Y R+ +V + LID+Y K GCLE A +VF+ M + V +W+AMI LA + R
Sbjct: 249 IHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGR 308
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+EAL +F +M + G+ N +TF+ +L AC+ L+ G F SM + ++P +EHYG
Sbjct: 309 AEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYG 368
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
C+VDLL RAGLL EA EF+ +MP +P+ V GALLGAC++H V++ E + LLEL P
Sbjct: 369 CMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL 428
Query: 268 HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
+ G YVVLSNI+A RW +RK M + ++K P +S I
Sbjct: 429 NDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 470
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK G ++ A +FE M +R VVSW+++I G +G EA+ +F + M V +
Sbjct: 268 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD-MSQVG-IE 325
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T++ +L +C+ GL++EG + Y I+ + ++DL + G L
Sbjct: 326 PNGVTFIGLLHACSHMGLISEGRRFFASMTRDY----GIIPQIEHYGCMVDLLSRAGLLH 381
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A +M +K + W A++ +
Sbjct: 382 EAHEFILNMPMKPNGVVWGALLGA 405
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 186/296 (62%), Gaps = 4/296 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +DVV+WT +++G+V +G F + VF+ M VRPN AT VSV S+CAGL
Sbjct: 177 VFDEMQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGL 236
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L K +H Y+ + + + + +LID+YGK G +E A +F M KD+ +W
Sbjct: 237 ---GSLEYAKGLHAYVEKVGLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWT 293
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMIS LAS+ KEA+ +F MKE G+ + TFV VL+AC+ A LV+ G+ +F+SM +
Sbjct: 294 AMISGLASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENE 353
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
++V P ++HYGC+VDL RAGL++ +F+ SMPFEP+ ++LGALL AC I+ +D+
Sbjct: 354 YKVTPDIKHYGCMVDLFSRAGLIARGYQFIESMPFEPNLAILGALLSACSINNELDIGEL 413
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI-RKIPAYSLIEA 311
V +R+ ++ G V+LSNI+A W+ LR+ + + I RK P S+I +
Sbjct: 414 VIKRIESVRSDKGGAGVLLSNIYANQNLWHEVDSLRRKIRDDTICRKPPGQSVITS 469
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A LF M ++D+ SWT++I+G +G EA+ +F +M V
Sbjct: 264 LIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVALFFSM--KEAGVL 321
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T+V VLS+C AGLV+EG + Y ++ + ++DL+ + G +
Sbjct: 322 PDSTTFVVVLSACSHAGLVDEGISIFNSMENEY----KVTPDIKHYGCMVDLFSRAGLIA 377
Query: 119 RAIRVFKSMVIK-DVCTWNAMISSLASNS 146
R + +SM + ++ A++S+ + N+
Sbjct: 378 RGYQFIESMPFEPNLAILGALLSACSINN 406
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 4/174 (2%)
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
+ G L + +HG LR +F TAL++ Y A RVF M KDV W
Sbjct: 132 SSGDRPLCESLHGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVFDEMQAKDVVAWTG 191
Query: 138 MISSLASNSREKEALVMFDEMK--EKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
M+S + + +F EM+ E+ +R N T V+V +ACA +E L H+ +
Sbjct: 192 MVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGL-HAYVE 250
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
K + + ++D+ G+ G + A+ MP + D A++ HG
Sbjct: 251 KVGLEGELIVKNSLIDMYGKCGSIELARGLFGLMP-QKDLHSWTAMISGLASHG 303
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 189/323 (58%), Gaps = 18/323 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIING-------------FVRNGCFGEAIC 47
MIDG G + A +F+ M +R+VV+WTS+I+G + R G EA+
Sbjct: 124 MIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALA 183
Query: 48 VFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107
+F M VRP+ + +SVLS C L + L G+QVH ++R++ + +++ + L
Sbjct: 184 LFSLMQREG--VRPSFPSVISVLSVCGSLAS---LDHGRQVHSQLVRSQFDIDIYVSSVL 238
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
I +Y K G L A RVF KD+ WN++I+ A + ++AL +F +M + +E
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDE 298
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
ITF+ VL+AC+ V+ GLE+F SM K++V P EHY C+VDLLGRAG L+EA +
Sbjct: 299 ITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIE 358
Query: 228 SMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
+MP E DA V GALLGAC+ H +DL ++LL+L+P + G Y++LSN+++ RW
Sbjct: 359 NMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKD 418
Query: 288 ATDLRKAMVEAGIRKIPAYSLIE 310
+LRK M +RK P S IE
Sbjct: 419 VVELRKTMRAKNLRKSPGCSWIE 441
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+NG + A +F+ M +R+VVSWT++I G+V+ G EA +F M
Sbjct: 31 LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM-------- 82
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS GL+ +G + +Q+ + ++V S T +ID G L A
Sbjct: 83 -PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS----TNMIDGLCSEGRLIEA 137
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSR-------------EKEALVMFDEMKEKGLRANE 167
+F M ++V W +MIS + E EAL +F M+ +G+R +
Sbjct: 138 REIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSF 197
Query: 168 ITFVAVLTACARAQLVELGLELFHSML 194
+ ++VL+ C ++ G ++ HS L
Sbjct: 198 PSVISVLSVCGSLASLDHGRQV-HSQL 223
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 186/312 (59%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFK--NMMGNVNL 58
++D Y K G+MD + +F M D++SW ++I V F + F+ N M L
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVH---FDDCTVGFQMINEMRTEGL 519
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+EAT + +L C+ L GK++HGYI ++ +V +G ALI++Y K G LE
Sbjct: 520 M-PDEATVLGILPMCSLLAVRRQ---GKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLE 575
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
I+VFK M KDV TW A+IS+ K+AL F +M+ G+ + + F+A + AC+
Sbjct: 576 NCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS 635
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +V+ GL F M + + P MEHY CVVDLL R+GLL++A+EF+ SMP +PDAS+
Sbjct: 636 HSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLW 695
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+ G ++ V +++LEL G YV++SNI+A L +W++ +R +M
Sbjct: 696 GALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTK 755
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 756 GLKKEPGSSWIE 767
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 17/229 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN--MMGNVNL 58
+ID Y + D+D+A +FE M RD VSW S+I+G+ NG + +A+ ++ M G V
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-- 219
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T SVL +C L+ + G VHG I + I V +G L+ +Y K L
Sbjct: 220 --PDCFTMSSVLLACGSLM---AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +KD TWN MI A R + ++ +F +M + G + ++ + + AC
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACG 333
Query: 179 RAQLVELGLELFHSMLGK-FEVVPIMEHYGC--VVDLLGRAGLLSEAKE 224
++ +++G + ++G FE + C ++D+ + G L A+E
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTV----ACNILIDMYAKCGDLLAAQE 378
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 127/252 (50%), Gaps = 14/252 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+ +A +F+ +D V+W S+ING+ ++G + E + FK M +
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER---K 419
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+V +LS + L + + G+ +H +++ + +G +L+D+Y K G ++
Sbjct: 420 PDSVTFVLLLSIFSQLAD---INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M D+ +WN +I+S M +EM+ +GL +E T + +L C+
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536
Query: 181 QLVELGLELFHSMLGK--FEV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G E+ H + K FE VPI ++++ + G L + + M E D
Sbjct: 537 AVRRQGKEI-HGYIFKSGFESNVPIG---NALIEMYSKCGSLENCIKVFKYMK-EKDVVT 591
Query: 238 LGALLGACKIHG 249
AL+ A ++G
Sbjct: 592 WTALISAFGMYG 603
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y + D S++ +F ++ +V W SII NG F +A+ + M +
Sbjct: 60 LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM--REKKL 117
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T+ SV++SCA +++ L LG VH + + +++G ALID+Y + L+
Sbjct: 118 QPDAFTFPSVINSCARILD---LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDN 174
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF+ M +D +WN++IS SN ++AL M+ + + G+ + T +VL AC
Sbjct: 175 ARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGS 234
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
V+ G+ V ++E G D++ GLLS +F R
Sbjct: 235 LMAVKEGV----------AVHGVIEKIGIAGDVIIGNGLLSMYFKFER 272
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A +F M +D V+W ++I G+ + G ++ +F +M ++ P+
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM---IDGFVPDML 323
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ S + +C G L +GK VH Y++ + LID+Y K G L A VF
Sbjct: 324 SITSTIRACG---QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVF 380
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ KD TWN++I+ + KE L F MK + + + +TFV +L+
Sbjct: 381 DTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLS 430
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLAS 144
+ VH I+ + + LSV LI Y +V ++ VF+S+ +V WN++I +L
Sbjct: 39 RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIM 203
N +AL + EM+EK L+ + TF +V+ +CAR +ELG + H+M FE +
Sbjct: 99 NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK---IHGAVDLCHE 256
+ ++D+ R L A+ M S + G C A+D+ H+
Sbjct: 159 GN--ALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK 212
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 10/313 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K GD+ S+ L+F + +R+VVSW S++ V+N A VF V
Sbjct: 251 LIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEV-- 308
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + SVLS+CA L GGL LG+ VH L+ + ++F+G+AL+DLYGK G +E
Sbjct: 309 -EPTDFMISSVLSACAEL---GGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIE 364
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTA 176
A +VF+ M +++ TWNAMI A AL +F EM G+ + +T V+VL+A
Sbjct: 365 YAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSA 424
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+RA VE GL++F SM G++ + P EHY CVVDLLGR+GL+ A EF++ MP P S
Sbjct: 425 CSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTIS 484
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
V GALLGACK+HG L +L EL P G +VV SN+ A RW AT +RK M
Sbjct: 485 VWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMR 544
Query: 297 EAGIRKIPAYSLI 309
+ GI+K YS +
Sbjct: 545 DIGIKKNVGYSWV 557
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 16/288 (5%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
D Y K G A +F+ M R++ +W + ++ V++G +AI FK + P
Sbjct: 151 FDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDG--EP 208
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N T+ + L++CA +V+ L LG+Q+HG+I+R+ V + LID YGK G + +
Sbjct: 209 NAITFCAFLNACADIVS---LELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSE 265
Query: 122 RVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF + ++V +W +++++L N E+ A ++F + + K + + +VL+ACA
Sbjct: 266 LVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACAE 324
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ELG + H++ K V + +VDL G+ G + A++ R MP E +
Sbjct: 325 LGGLELGRSV-HALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMP-ERNLVTWN 382
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCG---RYVVLSNIHAGLER 284
A++G G VD+ + E+ CG YV L ++ + R
Sbjct: 383 AMIGGYAHLGDVDMALSL---FQEMTSGSCGIALSYVTLVSVLSACSR 427
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K +SA L+ R VV+WTS+I+G V N F A+ F NM V
Sbjct: 49 LVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNM--RRECVL 106
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+ V + A L GKQ+H L+ +L VF+G + D+Y K G A
Sbjct: 107 PNDFTFPCVFKASASLHMP---VTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEA 163
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +++ TWNA +S+ + R +A+ F + N ITF A L ACA
Sbjct: 164 RNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADI 223
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
+ELG +L H + + + + ++D G+ G
Sbjct: 224 VSLELGRQL-HGFIVRSRYREDVSVFNGLIDFYGKCG 259
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 84 LGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
LG+ VH +ILR ++ L F+ L+++Y K+ A V + V TW ++IS
Sbjct: 25 LGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGC 84
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
N R AL+ F M+ + + N+ TF V A A + G +L L ++ +
Sbjct: 85 VHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDV 144
Query: 203 MEHYGC-VVDLLGRAGLLSEAKEFMRSMP 230
GC D+ + GL EA+ MP
Sbjct: 145 F--VGCSAFDMYSKTGLRPEARNMFDEMP 171
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 180/313 (57%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY ++GD+ +A+ LFE M +RDV SW +I+ +NG F EA+ +F+ M+ N +R
Sbjct: 199 MLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMI-NDPCIR 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA G L L K +H + R + VF+ +L+DLYGK G LE A
Sbjct: 258 PNEVTLVCVLSACA---QTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM---KEKGLRANEITFVAVLTAC 177
VFK K + WN+MI+ A + R +EA+ +F++M ++ + ITF+ +L AC
Sbjct: 315 SSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLNAC 374
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LV G F M +F + P +EHYGC++DLLGRAG EA E M +M E D ++
Sbjct: 375 THGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDEALETMSTMKMEADEAI 434
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL ACK +G +DL + L+ L P + G +++N++ + W A RK +
Sbjct: 435 WGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKH 494
Query: 298 AGIRKIPAYSLIE 310
K P +S IE
Sbjct: 495 QNAYKPPGWSQIE 507
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 38/234 (16%)
Query: 49 FKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108
F +M N + RPN Y VL S L + L VH ++ ++ L V + TAL+
Sbjct: 112 FFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPL---VHTHLFKSGFHLYVVVQTALL 168
Query: 109 DLYGK-VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG----- 162
Y V + A ++F M ++V +W AM+S A + A+ +F+EM E+
Sbjct: 169 HSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWN 228
Query: 163 ---------------------------LRANEITFVAVLTACARAQLVELGLELFHSMLG 195
+R NE+T V VL+ACA+ ++L + H+
Sbjct: 229 AILAACTQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGI-HAFAY 287
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + + +VDL G+ G L EA + M + + +++ +HG
Sbjct: 288 RRNLSSDVFVSNSLVDLYGKCGNLEEASSVFK-MSSKKSLTAWNSMINCFALHG 340
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFE-NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ D Y K GDM+SA +F + R+VVS+T +I+G+V + + VF + +
Sbjct: 183 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL--RRQGI 240
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ S++ +CA N+ L G Q+H +++ F+ + L+D+YGK G LE+
Sbjct: 241 EPNEFTFSSLIKACA---NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 297
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+ F + WN+++S + K+A+ +F+ M ++G++ N ITF+++LT C+
Sbjct: 298 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSH 357
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL+ F+SM + VVP EHY CV+DLLGRAG L EAKEF+ MPFEP+A
Sbjct: 358 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 417
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ LGAC+IHG ++ +L++L+PK+ G V+LSNI+A +W +R M +
Sbjct: 418 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 477
Query: 300 IRKIPAYSLIE 310
++K+P YS ++
Sbjct: 478 VKKLPGYSWVD 488
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 11/223 (4%)
Query: 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62
D Y K G M A +FE M +D VSWT++I+G+ + G F EA+ FK M+ V +
Sbjct: 84 DMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE--VTID 141
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
+ S L +C L G+ VH +++ +F+G AL D+Y K G +E A
Sbjct: 142 QHVLCSTLGACGAL---KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 198
Query: 123 VFK-SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF ++V ++ +I + ++ L +F E++ +G+ NE TF +++ ACA
Sbjct: 199 VFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQA 258
Query: 182 LVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEA 222
+E G +L H+ + K F+ P + +VD+ G+ GLL +A
Sbjct: 259 ALEQGTQL-HAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 298
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 15/234 (6%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEATYVSVLSSCAGLVN 78
M +R++VSWT++I+G +N F EAI F M G V P + + S + +CA L
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV----PTQFAFSSAIRACASL-- 54
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
G + +GKQ+H L+ I +F+G+ L D+Y K G + A +VF+ M KD +W AM
Sbjct: 55 -GSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAM 113
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
I + +EAL+ F +M ++ + ++ + L AC + + G + HS + K
Sbjct: 114 IDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV-HSSVVKLG 172
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ + D+ +AG + A S F D+ + C I G V+
Sbjct: 173 FESDIFVGNALTDMYSKAGDMESA-----SNVFGIDSECRNVVSYTCLIDGYVE 221
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY+K+GD DSA+ LF M D+V+W +I G+ NG F +A+ +F M+ + R
Sbjct: 246 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS--R 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT VSVLS+ +GL G G+ +H Y+ +N L +GT+LI++Y K GC+E A
Sbjct: 304 PSHATLVSVLSAVSGLAVLGK---GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+++ K V W A+I L + AL +F EM + GL+ N I F+ VL AC A
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M+ ++++ P +EHYGC+VD+L RAG L EAK + +MP P+ + +
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG + HG +D+ +R++E+ P+ G Y++LSN++A W + + +R+ M + G
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540
Query: 301 RKIPAYSLIE 310
RK P S +E
Sbjct: 541 RKDPGCSSVE 550
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
K D+ A +F+ + +R ++ W +II +V N + I +F + V+ P+ T
Sbjct: 59 KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL---VHEYLPDNFTL 115
Query: 67 VSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V+ CA G+V EG KQ+HG L+ VF+ +L+++Y K G ++ A +VF
Sbjct: 116 PCVIKGCARLGVVQEG-----KQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVF 170
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ KDV WN++I A AL +F+EM E+ + ++ ++ ++ VE
Sbjct: 171 DGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVE 226
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+LF M + V + +++ ++G A E MP
Sbjct: 227 SARKLFDQMPCRNLV-----SWNAMINGYMKSGDFDSALELFYQMP 267
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 28/236 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G++D A +F+ M+ +DVV W S+I+G+ R G A+ +F+ M
Sbjct: 153 LVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM-------- 204
Query: 61 PNEATY-----VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
P + V LS C + + L+ + N A+I+ Y K G
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWN----------AMINGYMKSG 254
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A+ +F M I D+ TWN MI+ N + +A+ MF M + G R + T V+VL+
Sbjct: 255 DFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLS 314
Query: 176 ACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A + ++ G HS + K FE+ I+ ++++ + G + A R++
Sbjct: 315 AVSGLAVLGKG-RWIHSYMEKNGFELDGILG--TSLIEMYAKCGCIESALTVFRAI 367
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 13/225 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYG--KVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+Q+H + L+ I F+ + L+ LY K+ L A +F + + + WN +I
Sbjct: 30 EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
N + +V+F E+ + L N T V+ CAR +V+ G ++ H + K +
Sbjct: 90 ENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQI-HGLALKIGFGSDV 147
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
G +V++ + G + A++ M + D + +L+ G +D + +L E
Sbjct: 148 FVQGSLVNMYSKCGEIDCARKVFDGM-IDKDVVLWNSLIDGYARCGEID----IALQLFE 202
Query: 264 LQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYS 307
P + + VL + GL + + RK + R + +++
Sbjct: 203 EMPERDAFSWTVLVD---GLSKCGKVESARKLFDQMPCRNLVSWN 244
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY+K ++ A +F++M + +++V+W ++I+G+V N + + +F+ M+ +
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG--I 280
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPN + S L C+ L L LG+Q+H + ++ + V T+LI +Y K G L
Sbjct: 281 RPNSSGLSSALLGCSEL---SALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+ M KDV WNAMIS A + +AL +F EM + +R + ITFVAVL AC
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV +G+ F SM+ ++V P +HY C+VDLLGRAG L EA + +RSMPF P A+V G
Sbjct: 398 AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V+L +LL+L ++ YV L+NI+A RW +RK M E+
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESN 517
Query: 300 IRKIPAYSLIE 310
+ K+P YS IE
Sbjct: 518 VVKVPGYSWIE 528
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ YV+N + + A F+ M +D SW ++I G+ R G +A +F +MM
Sbjct: 130 MLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM------E 183
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ +++S G + G L + + + V V TA+I Y K +E A
Sbjct: 184 KNEVSWNAMIS---GYIECGDL----EKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+FK M + K++ TWNAMIS NSR ++ L +F M E+G+R N + L C+
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LG ++ H ++ K + + ++ + + G L +A + M + D
Sbjct: 297 LSALQLGRQI-HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWN 354
Query: 240 ALLGACKIHGAVD 252
A++ HG D
Sbjct: 355 AMISGYAQHGNAD 367
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LF+ + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 276 LIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE--N 333
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 334 PNDVTMLSILPACAQL---GAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIE 390
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM + + NAMI A + R A +F M++ G+ ++ITFV +L+AC+
Sbjct: 391 AAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 450
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG GL EA+E + +M EPD +
Sbjct: 451 HSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIW 510
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L ++L++++P++ G YV+LSNI+A RWN ++R + +
Sbjct: 511 CSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDK 570
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 571 GMKKVPGCSSIE 582
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 45/306 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G ++SA +F+ + +DVVSW +II+G+ G EA+ +FK MM V+
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN--VK 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T V+V+S+CA G + LG+QVH +I + + ++ + ALIDLY K G +E A
Sbjct: 233 PDESTMVTVVSACA---QSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN MI + KEAL++F EM G N++T +++L ACA+
Sbjct: 290 CGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQL 349
Query: 181 QLVELGLELFHSMLGK----------------------------FEVVPIMEH---YGCV 209
++ G H + K +V M H C
Sbjct: 350 GAIDFG-RWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACN 408
Query: 210 VDLL-----GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263
+ GRA + MR EPD LL AC G +DL + R + +
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQN 468
Query: 264 --LQPK 267
+ PK
Sbjct: 469 YKITPK 474
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 37/240 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + AI ++ M+ ++ L+ PN T+ +L SC
Sbjct: 56 AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMI-SLGLL-PNSYTFPFLLKSC 113
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK-------------------- 113
A L G+Q+HG++L+ L +++ T+LI +Y K
Sbjct: 114 AKLKVSKE---GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVV 170
Query: 114 -----------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
G +E A ++F + +KDV +WNA+IS A KEAL +F EM +
Sbjct: 171 SYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN 230
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
++ +E T V V++ACA++ ++LG ++ HS + + ++ ++DL + G + A
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQV-HSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+ Y++NG M ++ +FENM RD+++W +II V + + + M V
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM--RTEGVT 351
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT +S+L C+ L + GK++HG I + + V +G LI++Y K G L +
Sbjct: 352 PDMATMLSILPVCSLLAAKRQ---GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNS 408
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VFK M KDV TW A+IS+ K+A+ F EM+ G+ + + FVA++ AC+ +
Sbjct: 409 FQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHS 468
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL FH M +++ P +EHY CVVDLL R+ LL +A++F+ SMP +PD+S+ GA
Sbjct: 469 GLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGA 528
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G ++ V R++EL P G YV++SNI+A L +W++ +RK++ G+
Sbjct: 529 LLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGL 588
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 589 KKDPGCSWME 598
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF----KNMMGNV 56
+ID Y + D+D A +FE M RDVVSW S+I+G+ NG + EA+ ++ K M V
Sbjct: 156 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMV 215
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N +P+ T S+L +C L G L GK VH Y++ + LI++Y K G
Sbjct: 216 NQFKPDLLTITSILQACGHL---GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 272
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L + VF M KD +WN+MI+ N + ++L +F+ MK + + IT+ ++ +
Sbjct: 273 LLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI----ITWNTIIAS 328
Query: 177 CARAQLVELGLELFHSM 193
C ++ LGL + M
Sbjct: 329 CVHSEDCNLGLRMISRM 345
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W SII NG F EA+ ++ + L +P+ T+ SV+++CAGL++ +
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQ-RIRL-QPDTYTFPSVINACAGLLD---FEM 133
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
K +H +L +++G ALID+Y + L++A +VF+ M ++DV +WN++IS +
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193
Query: 145 NSREKEAL-------VMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
N EAL +F EM + + + +T ++L AC +E G
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFG 241
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K +++SA LF+ ++ + SW ++I+G+ +NG +AI +F+ M + PN
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSE--FSPNPV 421
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +LS+CA L G L LGK VH + + S+++ TALI +Y K G + A R+F
Sbjct: 422 TITCILSACAQL---GALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWN MIS + +EAL +F EM G+ +TF+ VL AC+ A LV+
Sbjct: 479 DFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVK 538
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+F+SM+ ++ P ++HY CVVD+LGRAG L A +F+ +MP +P SV LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGA 598
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+IH +L V +L EL P + G +V+LSNIH+ + +A +R+ + + K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 305 AYSLIE 310
Y+LIE
Sbjct: 659 GYTLIE 664
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 9/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y K G + A LF + D+V++ ++I+G+ NG ++ +FK +M ++ +
Sbjct: 262 FISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELM--LSGAK 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+T VS++ G L L +HGY L++ + + TAL +Y K+ +E A
Sbjct: 320 LKSSTLVSLVPV------SGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N ++A+ +F EM+ N +T +L+ACA+
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQL 433
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG + H ++ + + ++ + + G ++EA+ MP
Sbjct: 434 GALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP 482
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 122/283 (43%), Gaps = 34/283 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K ++ A +F+ M ++D + W ++I+G+ +N + E+I VF++++ N + R
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI-NESCTR 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T + +L + A L L LG Q+H + ++ T I LY K G ++ A
Sbjct: 219 LDTTTLLDILPAVAELQE---LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMA 275
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ D+ +NAMI SN + +L +F E+ G + T V+++
Sbjct: 276 STLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHL 335
Query: 181 QL------------------VELGLELFHSMLGK-------FEVVP--IMEHYGCVVDLL 213
L V L +S L + F+ P + + ++
Sbjct: 336 MLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 214 GRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
+ GL +A R M F P+ + +L AC GA+ L
Sbjct: 396 TQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSL 438
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 7/247 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ++ + DV + ++ GF N ++ VF ++ + +L +PN +TY +S+ +G
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDL-KPNSSTYAFAISAASGF 132
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
++ G +HG + + + +G+ ++ +Y K +E A +VF M KD WN
Sbjct: 133 RDDRA---GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWN 189
Query: 137 AMISSLASNSREKEALVMF-DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
MIS N E++ +F D + E R + T + +L A A Q + LG+++ HS+
Sbjct: 190 TMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-HSLAT 248
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
K + L + G + A R PD A++ +G +L
Sbjct: 249 KTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFR-RPDIVAYNAMIHGYTSNGETELSL 307
Query: 256 EVGRRLL 262
+ + L+
Sbjct: 308 SLFKELM 314
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A LF+ M K++ V+W ++I+G+ +G EA+ +F M+ + +
Sbjct: 461 LIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSG--IA 518
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++ VL +C AGLV EG +H Y SV ++D+ G+ G L+
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP----SVKHYACVVDILGRAGHLQ 574
Query: 119 RAIRVFKSMVIKD-VCTWNAMI 139
RA++ ++M I+ W ++
Sbjct: 575 RALQFIEAMPIQPGPSVWETLL 596
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 195/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K G++++A LFE + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 276 LIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--S 333
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +S+L +CA L G + +G+ +H YI + + + T+LID+Y K G +E
Sbjct: 334 PNDVTMLSILPACAHL---GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIE 390
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF S++ + + +WNAMI A + R A +F M++ + ++ITFV +L+AC+
Sbjct: 391 AAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 450
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 451 HSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 510
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK++ V+L + L++++PK+ G YV+LSNI+A RWN +R + +
Sbjct: 511 CSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDK 570
Query: 299 GIRKIPAYSLIE 310
G++K+P S IE
Sbjct: 571 GMKKVPGCSSIE 582
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 45/306 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G + SA +F+ + +DVVSW ++I+G+ G EA+ +FK MM VR
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN--VR 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T VSV+S+CA + LG+QVH +I + ++ + ALIDLY K G +E A
Sbjct: 233 PDESTMVSVVSACA---QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 349
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEF------------- 225
+E+G H + K V H ++D+ + G + A++
Sbjct: 350 GAIEIG-RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWN 408
Query: 226 ---------------------MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263
MR EPD LL AC G +DL + R + E
Sbjct: 409 AMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKED 468
Query: 264 --LQPK 267
+ PK
Sbjct: 469 YKITPK 474
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 37/240 (15%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + +++ W ++ G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 56 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMI-SLGLL-PNCYTFPFLLKSC 113
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS------- 126
A G+Q+HG++L+ L +++ T+LI +Y + G LE A +VF
Sbjct: 114 A---KSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVV 170
Query: 127 ------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ IKDV +WNAMIS A KEAL +F EM +
Sbjct: 171 SYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN 230
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T V+V++ACA++ +ELG ++ HS + ++ ++DL + G + A
Sbjct: 231 VRPDESTMVSVVSACAQSASIELGRQV-HSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 179/300 (59%), Gaps = 5/300 (1%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A LF+ M +R+ V+W ++I G+ N F +AI F+ M+ + +P+E T V VL
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADG--AQPSERTVVVVL 197
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
S+C+ L G GK +H +I N + L+VF+GTALID+Y K G + +VF+ + K
Sbjct: 198 SACSHL---GAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREK 254
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+V TWN +IS A N + AL F M + + +E+TF+ VL AC LV G F
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQF 314
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
SM +F + P +EHYGC+VDLLGRAGLL EA E ++SM EPD + ALL AC++HG
Sbjct: 315 MSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGN 374
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
L + +RL+EL+P + YV+LSNI++ RW LR M GIRK+P S IE
Sbjct: 375 TKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIE 434
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +T+ +VL + A L + G +GK +HG +++ + V+ TAL+ LY + A
Sbjct: 87 PDSSTFPAVLKATAQLCDTG---VGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDA 143
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F M ++ TWNA+I+ N + +A+ F M G + +E T V VL+AC+
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACS 201
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + +FE + +++V +W +I+G+ NG A+ F M+ + +
Sbjct: 231 LIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML--MENFK 288
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T++ VL +C GLV EG + L+ I ++DL G+ G LE
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIE----HYGCMVDLLGRAGLLE 344
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
A+ + +SM I+ D W A++
Sbjct: 345 EALELIQSMSIEPDPIIWRALL 366
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFE-NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ D Y K GDM+SA +F + R+VVS+T +I+G+V + + VF + +
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL--RRQGI 305
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ S++ +CA N+ L G Q+H +++ F+ + L+D+YGK G LE+
Sbjct: 306 EPNEFTFSSLIKACA---NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 362
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+ F + WN+++S + K+A+ +F+ M ++G++ N ITF+++LT C+
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSH 422
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL+ F+SM + VVP EHY CV+DLLGRAG L EAKEF+ MPFEP+A
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 482
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ LGAC+IHG ++ +L++L+PK+ G V+LSNI+A +W +R M +
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542
Query: 300 IRKIPAYSLIE 310
++K+P YS ++
Sbjct: 543 VKKLPGYSWVD 553
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 15/254 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
+++ Y K G++D A+ LF+ M +R++VSWT++I+G +N F EAI F M G V
Sbjct: 46 LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-- 103
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + + S + +CA L G + +GKQ+H L+ I +F+G+ L D+Y K G +
Sbjct: 104 --PTQFAFSSAIRACASL---GSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMF 158
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF+ M KD +W AMI + +EAL+ F +M ++ + ++ + L AC
Sbjct: 159 DACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ + G + HS + K + + D+ +AG + A S F D+
Sbjct: 219 ALKACKFGRSV-HSSVVKLGFESDIFVGNALTDMYSKAGDMESA-----SNVFGIDSECR 272
Query: 239 GALLGACKIHGAVD 252
+ C I G V+
Sbjct: 273 NVVSYTCLIDGYVE 286
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 1/166 (0%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L GKQ+H ++ F+ L+++Y K G L+ A+++F +M +++ +W AMIS
Sbjct: 21 LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
L+ NS+ EA+ F M+ G + F + + ACA +E+G ++ H + KF +
Sbjct: 81 LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM-HCLALKFGIGS 139
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ + D+ + G + +A + MP + + S + G KI
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 189/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG AI LF +M +R + +WT++I+GFV+ G A+ +F M + VR
Sbjct: 83 LVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEM--RRDGVR 140
Query: 61 PNEATYVSVLSSCAGLVNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
++A VL++ G E L LG+Q+HG+ + + S+ +G AL+D+Y K +
Sbjct: 141 IDDAF---VLATVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHS 197
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF ++++DV +W ++ A + R +E L ++D M G++ NE+TFV ++ AC+
Sbjct: 198 AREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSH 257
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G +LF SM ++ + P ++HY C +DLL R+G LSEA+E + +MP+EPD + G
Sbjct: 258 AGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWG 317
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL ACK H +C V LLEL+PK Y++LSN++A +W+ +RK M E
Sbjct: 318 ALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEME 377
Query: 300 IRKIPAYSLIEA 311
IRK P YS IEA
Sbjct: 378 IRKEPGYSWIEA 389
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+Q+H + + + + ++LID+Y K G E A +VF S+ +K+ W A++S AS
Sbjct: 30 GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89
Query: 145 NSREKEALVMFDEMKEKGLRA 165
N EA+ +F M E+GL A
Sbjct: 90 NGCTGEAIDLFRSMPERGLFA 110
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 187/316 (59%), Gaps = 12/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + + +A +F M +R+VVSW ++I G+ +NG EA+ +F+ + +
Sbjct: 321 MVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFR--LLKRESIW 378
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P T+ ++LS+CA L + L LG+Q H ++L+ +F+G +LID+Y K
Sbjct: 379 PTHYTFGNLLSACANLAD---LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKC 435
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G +E RVF+ M +D +WNA+I A N EAL +F +M G + + +T + VL
Sbjct: 436 GSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVL 495
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
AC+ A LVE G F SM + ++P+ +HY C+VDLLGRAG L+EAK + +MP PD
Sbjct: 496 CACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPD 554
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A V G+LL ACK+HG +++ +LLE+ P + G YV+LSN++A L RW +RK
Sbjct: 555 AVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKL 614
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S IE
Sbjct: 615 MRQQGVTKQPGCSWIE 630
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I K+G +D A LF +M + D SW S+++GF ++ F E++ F M L+
Sbjct: 87 LISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLL- 145
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ S LS+CAGL++ L +G QVH + ++ V+MG+ALID+Y K G + A
Sbjct: 146 -NEYSFGSALSACAGLMD---LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACA 201
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M+ +++ TWN++I+ N EAL +F M + GL +E+T +V++ACA
Sbjct: 202 EEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASL 261
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ GL++ ++ + + +VD+ + ++EA+ M
Sbjct: 262 CALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 37/220 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + A +F M++R++V+W S+I + +NG EA+ VF MM + +
Sbjct: 188 LIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG--LE 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
P+E T SV+S+CA L L G Q+H +++ N+ + +G AL+D+Y K +
Sbjct: 246 PDEVTLASVVSACASLC---ALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302
Query: 120 AIRVFKSMVIKDVCT-------------------------------WNAMISSLASNSRE 148
A RVF M I++V + WNA+I+ N
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+EAL +F +K + + TF +L+ACA + LG +
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQ 402
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 38/243 (15%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+L PN + + +L SC + G L VH IL + + +F+ LID+YGK C
Sbjct: 9 DLYLPNSSPFAKLLDSCLRSRSARGTRL---VHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 117 LE-------------------------------RAIRVFKSMVIKDVCTWNAMISSLASN 145
L+ A R+F SM D C+WN+M+S A +
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
R +E+L F +M + NE +F + L+ACA + +G ++ H+++ K +
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV-HALVSKSRYSTDVYM 184
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE-- 263
++D+ + G ++ A+E M E + +L+ + +G EV R+++
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG 243
Query: 264 LQP 266
L+P
Sbjct: 244 LEP 246
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 182/313 (58%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+++A +F M +R +VSW+++I+ +R G F EA+ +F MMGN R
Sbjct: 190 MVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNG--FR 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTALIDLYGKVGCL 117
P+ SVL +CA L G L G+ VH ++ + S V + TAL+D+Y K GC+
Sbjct: 248 PDAVVLSSVLKACAHL---GALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCM 304
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A VF + +DV WNAMI LA N K AL +F M + G NE TFV VL AC
Sbjct: 305 DEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCAC 364
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
V+ G E+F SM + P EHYGC+ DLLGRAGLL EA+ + MP EP AS
Sbjct: 365 THTGRVDEGKEIFRSMC-DHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQ 423
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GAL+ +C +H V + VG++L+EL+P GRYVVL N++A W A LRK M E
Sbjct: 424 WGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEE 483
Query: 298 AGIRKIPAYSLIE 310
G +K S IE
Sbjct: 484 RGAKKETGLSFIE 496
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 12/209 (5%)
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
L F ++ YGK G LE A VF M + + +W+AMI + EAL MFD+M
Sbjct: 182 LDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQM 241
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSM----LGKFEVVPIMEHYGCVVDLLG 214
G R + + +VL ACA +E G + + LG+ ++E +VD+
Sbjct: 242 MGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLE--TALVDMYC 299
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ--PKHCGRY 272
+ G + EA + + D + A++G ++G E+ RR+L++ P
Sbjct: 300 KCGCMDEAWWVFDGVQSQ-DVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFV 358
Query: 273 VVL-SNIHAGLERWNRATDLRKAMVEAGI 300
VVL + H G R + ++ ++M + GI
Sbjct: 359 VVLCACTHTG--RVDEGKEIFRSMCDHGI 385
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 39/176 (22%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS--MVIKDVCTWNAMISSLASN 145
HG L++ + + L+ LY +G L A RVF + D +WN M+S
Sbjct: 138 AHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKC 197
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+ A +F M E+GL +++ A++ AC RA L +F M+G
Sbjct: 198 GDLEAAREVFVRMPERGL----VSWSAMIDACIRAGEFSEALRMFDQMMGN--------- 244
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
F PDA VL ++L AC GA++ V R L
Sbjct: 245 ------------------------GFRPDAVVLSSVLKACAHLGALERGRWVHRFL 276
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 185/313 (59%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV NG D A LFE +DVV WT+++NG+V+ F EA+ +F+ M +R
Sbjct: 203 MVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM--QTARIR 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS+L+ CA G L GK +HGYI N + + +GTAL+D+Y K GC+E A
Sbjct: 261 PDNFVLVSLLTGCA---QTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M +D +W ++I LA+N AL ++ EM+ G+R ++ITFVAVLTAC+
Sbjct: 318 LGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHG 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS---V 237
V G +F+SM + ++ P EHY C++DLL RAGLL EA+E + M E D + V
Sbjct: 378 GFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPV 437
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LL A + +G V + V +L +++ + +L++++A RW T++R+ M +
Sbjct: 438 YCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKD 497
Query: 298 AGIRKIPAYSLIE 310
GIRK P S IE
Sbjct: 498 LGIRKFPGCSSIE 510
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 9/189 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G M+ +F+ M +RDVVSW +I+ +V +G F +AI VF+ M NL + +E
Sbjct: 75 YAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNL-KADEG 133
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS LS+C+ L N L +G++++ Y++ E +SV G AL+D++ K GCL++A +F
Sbjct: 134 TIVSTLSACSVLKN---LEIGERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIF 189
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
SM K+V W +M+S SN R EA +F+ K + + + A++ + +
Sbjct: 190 DSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDV----VLWTAMMNGYVQFNRFD 245
Query: 185 LGLELFHSM 193
LELF M
Sbjct: 246 EALELFRCM 254
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 132/272 (48%), Gaps = 14/272 (5%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ + F + + +F + G + P+ T VL S L + G++VHGY
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQG--LYPDNFTLPVVLKSIGRLRK---VIEGEKVHGY 55
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++ + ++ +L+ +Y +G +E +VF M +DV +WN +ISS + R ++A
Sbjct: 56 AVKTGLESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDA 115
Query: 152 LVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
+ +F M +E L+A+E T V+ L+AC+ + +E+G ++ ++ +FE+ + +V
Sbjct: 116 ISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMS--VRTGNALV 173
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP-KHC 269
D+ + G L +A+ SM + + +++ +G D R L E P K
Sbjct: 174 DMFCKCGCLDKARAIFDSMR-DKNVKCWTSMVSGYVSNGRTD----EARELFERSPVKDV 228
Query: 270 GRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
+ + N + R++ A +L + M A IR
Sbjct: 229 VLWTAMMNGYVQFNRFDEALELFRCMQTARIR 260
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++DSA +F+ M+KRD+ SW ++I+GF + EA+ +FK M ++ +
Sbjct: 146 LLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRM--EIDGFK 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE + + LS+CA L G G+++HGYI ++ + +ID+Y K G +++A
Sbjct: 204 PNEISVLGALSACAQL---GDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKA 260
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF+SM KD+ TWN MI + A + +AL +F++M + G+ ++++++AVL AC
Sbjct: 261 YLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNH 320
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G LF+SM V P ++HYG VVDLLGRAG L EA + + SMP PD +
Sbjct: 321 GGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQ 379
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGA + H V++ V R+L+E+ HCG +V+LSN++A ERW +R+AM
Sbjct: 380 TLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRD 439
Query: 300 IRKIPAYSLIE 310
++K+P S IE
Sbjct: 440 VKKVPGLSYIE 450
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 8/242 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ AIL F + W +II GF+++ A +K+M+ V ++V
Sbjct: 53 GNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFV- 111
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
L +CA ++ Q+H +I+R + +GT L+D+Y KVG ++ A +VF MV
Sbjct: 112 -LKACARVL---ARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMV 167
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+D+ +WNA+IS A S+ EAL +F M+ G + NEI+ + L+ACA+ + G E
Sbjct: 168 KRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEG-E 226
Query: 189 LFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
H + K E + V+D+ + G + +A SM D ++ A +
Sbjct: 227 KIHGYI-KVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAM 285
Query: 248 HG 249
HG
Sbjct: 286 HG 287
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 186/311 (59%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G + A +F+ M RD VSW+++I G+V+ G A+ VFKNM+ V+
Sbjct: 205 VLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG--VK 262
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NEA V+ LS+ A L G L GK VH + R + +SV +G ALID+Y K G + A
Sbjct: 263 ANEAAIVTALSAAAQL---GLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAA 319
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M +DV WN+MI LA++ +A+ +F++ +G ITFV VL AC+R
Sbjct: 320 KEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRT 379
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M K+++ MEHYGC+VDLL RAGL+ EA E + M PD + G
Sbjct: 380 GLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGT 439
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L ACK HG VDL VG +L+EL P H G YV+L++I+A ++W+ +RK M G
Sbjct: 440 ILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGT 499
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 500 SKSAGWSLMEA 510
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 65 TYVSVLSSCAGLVNEGGLYL-GKQVHGY-------ILRN-----EIVLSVFMGTALIDLY 111
T+V L+ AG G LY+ Q+H Y +R IV V A++ Y
Sbjct: 152 THVHALAVKAGAA--GDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGY 209
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
+ G + A VF M ++D +W+ +I + AL +F M +G++ANE V
Sbjct: 210 VRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIV 269
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L+A A+ L+E G + H ++ + + + ++D+ + G ++ AKE +MP
Sbjct: 270 TALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMP 327
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+ G +D A +F+ M +DV SW++II G +NG EA+ +F++MM V+
Sbjct: 159 MISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMM--VSHTL 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ VS+LS+CA L G L+ G+ +H YI R +S+ + TALID+Y K G ++
Sbjct: 217 PNESALVSLLSACAHL---GALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSG 273
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ M +D+ TW A+IS A + K+ +F+EM G+ N + FVA+L+AC+ A
Sbjct: 274 YKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSACSHA 333
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G F+ M+ + P +EHYGC+VDLLGRAG L EA+EF+ SMP +P++ + G+
Sbjct: 334 GYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPNSVIWGS 393
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC+ H ++ R L+EL+P+ RY + + AT +RK + + G+
Sbjct: 394 MLSACRTHNDLNRGSWAFRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGM 453
Query: 301 RKIPAYSLIE 310
S IE
Sbjct: 454 ETTSGSSFIE 463
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 38/293 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YV ++ A +FE + DV + ++I G + +++ +F ++ + ++
Sbjct: 27 LLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELL--LGCLK 84
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--- 117
P+ TY VL +C+ N+ L GKQVH I++ I + + ++LI +Y G +
Sbjct: 85 PDNYTYTFVLKACS---NQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEA 141
Query: 118 ----------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
++A +F M KDV +W+A+I+ N
Sbjct: 142 ECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHT 201
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F++M NE V++L+ACA + G H+ + + + +
Sbjct: 202 EALALFEDMMVSHTLPNESALVSLLSACAHLGALHQG-RWIHAYIDRIGADMSIRLSTAL 260
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262
+D+ + G + +F R MP D GA++ I+G C E+ +L
Sbjct: 261 IDMYAKCGDIQSGYKFFRKMP-RRDIVTWGAIISGFAIYGQAKKCFELFEEML 312
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
++D Y K ++ A LLF+ M +D+V+WT +I G+ G E++ +F ++ G V
Sbjct: 1222 LVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFV-- 1279
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ VS++++CA L G + + VH Y+ RN L V +GTA+ID+Y K G ++
Sbjct: 1280 --PDKIAMVSIVNACAKL---GAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVD 1334
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F +M K+V +W+AMI++ + + K+AL +F M G+ N ITFV++L AC+
Sbjct: 1335 SAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACS 1394
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LVE GL L M F V P ++H+ C+VDLLGRAG L+EA F+ +M E D +
Sbjct: 1395 HAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLW 1454
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LLGAC+IH +DL + + LLELQP++ G Y++LSNI+A +W +R M +
Sbjct: 1455 SSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKR 1514
Query: 299 GIRKIPAYSLIE 310
++KIP Y+ IE
Sbjct: 1515 KLKKIPGYTWIE 1526
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 141/290 (48%), Gaps = 28/290 (9%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV + + A LF+ M +++ VSW+ +I GFV+ G F + FK ++ N V+P+
Sbjct: 1125 YVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNG--VQPDNY 1182
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V+ +C V L +G+ +H +L+ + L F+ AL+D+Y K +E A +F
Sbjct: 1183 TLPFVIKACRDTV---ALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLF 1239
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD+ TW MI A KE+LV+FD ++E+G ++I V+++ ACA+ +
Sbjct: 1240 DVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMN 1299
Query: 185 LGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
H + +F + I+ ++D+ + G + A+E +M + A++
Sbjct: 1300 KA-RFVHEYVNRNRFSLDVILG--TAMIDMYAKCGDVDSAREIFDNM-HHKNVISWSAMI 1355
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI----------HAGL 282
A HG G++ LEL P ++ +NI HAGL
Sbjct: 1356 AAYGYHGQ-------GKKALELFPMMLSSGILPNNITFVSLLYACSHAGL 1398
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
KQ+H I N ++ + + + L+ +Y CL A +F M K+ +W+ MI
Sbjct: 1099 KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVK 1158
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+ F E+ G++ + T V+ AC +++G L H ++ K+ + ++
Sbjct: 1159 VGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMG-RLIHCVVLKYGLH--LD 1215
Query: 205 HYGC--VVDLLGRAGLLSEAKEFMRSMP 230
H+ C +VD+ + ++ +AK MP
Sbjct: 1216 HFVCAALVDMYAKCKVIEDAKLLFDVMP 1243
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 192/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++NGD+ A LF M K++V+SWT++I G V+ G EA+ +F M+ + N +
Sbjct: 276 MITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRML-STNGAK 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VSVL +C+ L GL G+QVH I + S F+ +ALI++Y K G L A
Sbjct: 335 PNQGTFVSVLGACSNL---AGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 391
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F + +D+ +WN +I++ A + KEA+ F EM++ G + +++T+V +L+AC+
Sbjct: 392 RKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 451
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LVE GL+ F ++ ++ +HY C+VDL GRAG L EA F+ + +P A V
Sbjct: 452 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 511
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C +H V + + ++LLE++P++ G Y++LSNI+A +W A +R M +
Sbjct: 512 GALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDK 571
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 572 GLKKQPGCSWIE 583
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY +NG +DSA+ LFE M +R+VVSW ++++ + G EA +F M
Sbjct: 152 MIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM-------- 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + AGL G + + + + +V A+I Y + L+ A
Sbjct: 204 -PERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVV----SWNAMITGYAQNLRLDEA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +D+ +WN MI+ L N + A +F+EM +K N I++ ++T C +
Sbjct: 259 LDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK----NVISWTTMITGCVQE 314
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
E L++F ML P + G V +LG
Sbjct: 315 GESEEALKIFSRMLSTNGAKP---NQGTFVSVLG 345
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 32/251 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV- 59
MI K+G + A LF+ M + DV++WT++I+G+++ G EA +F + N+V
Sbjct: 58 MITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVT 117
Query: 60 ---------RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM------- 103
R N+ + L + + N+ + + GY I ++++
Sbjct: 118 WTAMVGGYIRSNKISDAEKLFN--EMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER 175
Query: 104 ----GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
++ + + G +E A R+F M +DV +W AMI+ L+ N R EA ++FD M
Sbjct: 176 NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMP 235
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
E+ N +++ A++T A+ ++ L+LF M + + + ++ L + G L
Sbjct: 236 ER----NVVSWNAMITGYAQNLRLDEALDLFERMPER-----DLPSWNTMITGLIQNGDL 286
Query: 220 SEAKEFMRSMP 230
A++ MP
Sbjct: 287 RRARKLFNEMP 297
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEM 158
V T +I Y K G +E A R+F + K+V TW AM+ +++ +A +F+EM
Sbjct: 82 DVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEM 141
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
K N +++ ++ A+ ++ + LF M + V + V+ +L + G
Sbjct: 142 PNK----NVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVV-----SWNTVMSMLAQCGR 192
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
+ EA+ MP E D A++ +G +D R L + P+ R VV N
Sbjct: 193 IEEARRLFDRMP-ERDVISWTAMIAGLSKNGRID----EARLLFDRMPE---RNVVSWNA 244
Query: 279 ----HAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
+A R + A DL + M E R +P+++ +
Sbjct: 245 MITGYAQNLRLDEALDLFERMPE---RDLPSWNTM 276
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
C W MI++L+ + R EA +FDEM+E + IT+ V++ + ++E LF
Sbjct: 55 CNW--MITNLSKDGRIMEARRLFDEMREPDV----ITWTTVISGYIKCGMIEEARRLFDR 108
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ K VV G + R+ +S+A++ MP
Sbjct: 109 VDAKKNVVTWTAMVGGYI----RSNKISDAEKLFNEMP 142
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G++ A +F M RD VSW+++I GF NGCF EA F+ ++ +R
Sbjct: 206 MLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREE--IR 263
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE + VLS+CA G GK +HG++ + + + ALID Y K G + A
Sbjct: 264 TNEVSLTGVLSACA---QAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMA 320
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF++M V + + +W ++I+ LA + +EA+ +F EM+E G+R + ITF+++L AC+
Sbjct: 321 RLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSH 380
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LVE G LF M + + P +EHYGC+VDL GRA L +A EF+ MP P+A +
Sbjct: 381 SGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWR 440
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC IHG +++ V RL E+ P + G +V+LSN++A +W + +R+ M E
Sbjct: 441 TLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHS 500
Query: 300 IRKIPAYSLIE 310
++K P +S+IE
Sbjct: 501 MKKTPGWSMIE 511
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ LF + D ++I + ++ F + L P+ T+ L +
Sbjct: 55 ALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTL-SPDSFTFAFALKAV 113
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
A N L G Q+H R+ +F+GT LI +Y + G A RVF M +V
Sbjct: 114 A---NSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVV 170
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
TWNA++++ + A +F M + L ++ +L A+A + L +F+ M
Sbjct: 171 TWNAVLTAAFRCGDVEGAQDVFGCMPVRNL----TSWNGMLAGYAKAGELGLARRVFYEM 226
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGA 250
+ EV + ++ G EA F R + E + L +L AC GA
Sbjct: 227 PLRDEVS-----WSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGA 281
Query: 251 VDL 253
+
Sbjct: 282 FEF 284
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G+MD A +FE M R+V+SW S+I GF++NG + +A+ +MG +
Sbjct: 396 MISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLV-LMGQEG-KK 453
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+++T+ LSSCA L L +GKQ+H IL++ + +F+ ALI +Y K G ++ A
Sbjct: 454 PDQSTFACSLSSCANL---AALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSA 510
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VFK + D+ +WN++IS A N EA F++M +G +E+TF+ +L+AC+ A
Sbjct: 511 EKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHA 570
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L G++LF M+ F + P+ EHY C+VDLLGR G L EA +R M + +A + G+
Sbjct: 571 GLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGS 630
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L RLLEL+P + Y+ LSN+HA RW LR M E
Sbjct: 631 LLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRA 690
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 691 GKLPGCSWIE 700
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 42/224 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV++ +D A+ LF+ +D VSWT++ING+VR G EA V+
Sbjct: 272 MIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVY----------- 320
Query: 61 PNEATYVSVLSSCA---GLVNEGGLYLGKQVH----------------GY---------- 91
N+ Y V + A GL+ G + QV GY
Sbjct: 321 -NQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEAL 379
Query: 92 -ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
+ R V + +I Y + G ++RA +F++M +++V +WN++I+ N +
Sbjct: 380 NLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLD 439
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
AL M ++G + ++ TF L++CA +++G +L +L
Sbjct: 440 ALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELIL 483
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 23/257 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY +NG M A+ FE M +R+VVSW ++ GFV N G A +F+ +
Sbjct: 179 MLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFE------KIPD 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++V++L G G + +++ + +V A+I Y + ++ A
Sbjct: 233 PNAVSWVTML---CGFARHGKIVEARKLFDRMPCKNVV----SWNAMIAAYVQDLQIDEA 285
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++FK KD +W MI+ + EA ++++M K + A A+++ +
Sbjct: 286 VKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAK----TALMSGLIQN 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ ++F S L K + + + ++ ++G +SEA R MP + +A
Sbjct: 342 GRIDEASQVF-SQLNKRDAIC----WNSMIAGYCQSGRMSEALNLFRQMPVK-NAVSWNT 395
Query: 241 LLGACKIHGAVDLCHEV 257
++ G +D E+
Sbjct: 396 MISGYAQAGEMDRATEI 412
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 28/262 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ + KNG + A LF+ M +R++VSW ++I G++ N EA +F +L+
Sbjct: 54 MVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLF-------DLMA 106
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++ +C +G L +++ + L A+I Y K G + A
Sbjct: 107 ERDNFSWALMITC--YTRKGMLEKARELFELVPDK---LDTACWNAMIAGYAKKGRFDDA 161
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M +KD+ ++N+M++ N + A+ F+ M E+ + + + + C
Sbjct: 162 EKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLG 221
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDAS-- 236
EL FE +P V L G R G + EA++ MP + S
Sbjct: 222 SAWEL-----------FEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWN 270
Query: 237 -VLGALLGACKIHGAVDLCHEV 257
++ A + +I AV L E
Sbjct: 271 AMIAAYVQDLQIDEAVKLFKET 292
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+VF I GK G ++ A RVF +++ K+ T+N+M++ A N R +A +FD+M
Sbjct: 16 NVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMS 75
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
++ L +++ ++ +VE +LF M + + ++ R G+L
Sbjct: 76 QRNL----VSWNTMIAGYLHNNMVEEAHKLFDLMAERDNF-----SWALMITCYTRKGML 126
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
+A+E +P + D + A++ G D +V ++
Sbjct: 127 EKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKM 168
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 193/315 (61%), Gaps = 10/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ K G +D A LF+ M +R+ V+W+++++ +V G FG+A+ +F++M+ + VR
Sbjct: 164 LLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSC--VR 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE---IVLSVFMGTALIDLYGKVGCL 117
PN A V VL++C L G L G+ VH ++ + + + TAL+D+Y K G L
Sbjct: 222 PNRAAVVGVLTACGAL---GALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSL 278
Query: 118 ERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
E A +VF + +DV + AMIS L+ + R EA+ +F +M +G+R NE+TF+ VLT
Sbjct: 279 ETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICVLT 338
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC RA LV E+F SM + P +EHYGC+VD+LGRAG L++A E +RSMP PD+
Sbjct: 339 ACGRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAGQLADALEAVRSMPMRPDS 398
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
VLGALL AC HG V+ +V R L EL H G +V LSN++AG +W +R+ M
Sbjct: 399 YVLGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWGKWEEVLKVRRDM 458
Query: 296 VEAGIRKIPAYSLIE 310
E + K+P S++E
Sbjct: 459 EERRVAKVPGCSMLE 473
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEM 158
++ LI Y G L A R+F V DVC+W +++++ A EA +FD M
Sbjct: 125 YVANGLIHAYATHGVLPAARRLFGGAVASRAADVCSWTSLLTACAKAGHVDEARALFDGM 184
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
R N++ + A+L+A A + LF ML
Sbjct: 185 P----RRNDVAWSAMLSAYVAAGSFGDAVRLFEDML 216
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+L+ K G ++ A +F M ++ W+AM+S+ + +A+ +F++M +R
Sbjct: 162 TSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCVR 221
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH---YGCVVDLLGRAGLLSE 221
N V VLTAC ++ G H++L + +VD+ + G L
Sbjct: 222 PNRAAVVGVLTACGALGALDQG-RWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLET 280
Query: 222 AKEFMRSMPF-EPDASVLGALLGACKIHG----AVDL 253
A++ + P + D A++ HG A+DL
Sbjct: 281 ARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDL 317
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 192/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G +K G D A +LF+ M +R++VSW ++++G+V+ F +A+ VF M V
Sbjct: 171 MVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM--RARGVD 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + +C G G L G++VH ++ ++ I + + TA++D+Y K GC+E A
Sbjct: 229 GNVFVAATAVVACTG---AGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
RVF+++ + K + TWN MI A + R ++AL +F M+ +G+ +++T V VLTACA
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACA 345
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A ++ G F+ + ++ + P MEHYGC+VDL GRAG L EAK+ ++ MP EPD VL
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL GA KIHG VDL +G R++EL P++ GRYV+L+N+ A RW +R+ M E
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465
Query: 299 GIRKIPAYSLIE 310
+ K S+IE
Sbjct: 466 NVSKEAGRSVIE 477
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL----------------------RNEI 97
RP+ T+ +L S L +L Q+H +L R ++
Sbjct: 98 RPDHFTFPQILPSAQPL------HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDL 151
Query: 98 VLSVFMG----------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VF G T ++ K+G + A +F M +++ +WNAM+S R
Sbjct: 152 ASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACR 211
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+AL +FDEM+ +G+ N + AC A + G E+ H + + + +
Sbjct: 212 FLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV-HRWVEQSGIQMDEKLAT 270
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDA-SVLGALLGACKIHG 249
VVD+ + G + EA ++P + ++G +HG
Sbjct: 271 AVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHG 313
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 186/311 (59%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G + A +F+ M RD VSW+++I G+V+ G A+ VFKNM+ V+
Sbjct: 205 VLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG--VK 262
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NEA V+ LS+ A L G L GK VH + R + +SV +G ALID+Y K G + A
Sbjct: 263 ANEAAIVTALSAAAQL---GLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAA 319
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M +DV WN+MI LA++ +A+ +F++ +G ITFV VL AC+R
Sbjct: 320 KEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRT 379
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M K+++ MEHYGC+VDLL RAGL+ EA E + M PD + G
Sbjct: 380 GLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGT 439
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L ACK HG VDL VG +L+EL P H G YV+L++I+A ++W+ +RK M G
Sbjct: 440 ILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGT 499
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 500 SKSAGWSLMEA 510
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 65 TYVSVLSSCAGLVNEGGLYL-GKQVHGY-------ILRN-----EIVLSVFMGTALIDLY 111
T+V L+ AG G LY+ Q+H Y +R IV V A++ Y
Sbjct: 152 THVHALAVKAGAA--GDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGY 209
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
+ G + A VF M ++D +W+ +I + AL +F M +G++ANE V
Sbjct: 210 VRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIV 269
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L+A A+ L+E G + H ++ + + + ++D+ + G ++ AKE +MP
Sbjct: 270 TALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMP 327
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 186/303 (61%), Gaps = 11/303 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLVRPNEATYV 67
G+MD A +F+NM RDVVSWT++I+G++R F A+ +F+ M M NV +P+E T V
Sbjct: 230 GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV---KPDEFTMV 286
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
S+L +CA L G L LG+ V I +N F+G AL+D+Y K G + +A +VFK M
Sbjct: 287 SILIACALL---GALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM 343
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
KD TW MI LA N +EAL MF M E + +EIT++ VL AC +V+ G
Sbjct: 344 YQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGK 399
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
F +M + + P + HYGC+VDLLG G L EA E + +MP +P++ V G+ LGAC++
Sbjct: 400 SFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRV 459
Query: 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYS 307
H V L +++LEL+P++ YV+L NI+A ++W +RK M+E GI+K P S
Sbjct: 460 HKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCS 519
Query: 308 LIE 310
L+E
Sbjct: 520 LME 522
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++ A +F+ M ++D +WT++I G NG EA+ +F NM+ V
Sbjct: 323 LVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEAS--VT 380
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E TY+ VL CA +V++G + +++ I +V ++DL G VGCLE A
Sbjct: 381 PDEITYIGVL--CACMVDKGKSFFTNMT----MQHGIKPTVTHYGCMVDLLGCVGCLEEA 434
Query: 121 IRVFKSMVIK 130
+ V +M +K
Sbjct: 435 LEVIVNMPVK 444
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 69 VLSSCAGLVN-EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VLS+C+ L + E G ++ K ++G I+ + ++ G ++ A VF +M
Sbjct: 197 VLSACSKLKDLEWGKHIFKYINGGIVEH--------------MFAACGEMDEAQGVFDNM 242
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +W AMI + AL +F EM+ ++ +E T V++L ACA +ELG
Sbjct: 243 KTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG- 301
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
E + + K +VD+ + G + +AK+ + M ++ D ++ I
Sbjct: 302 EWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMIVGLAI 360
Query: 248 HG 249
+G
Sbjct: 361 NG 362
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 33/223 (14%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++G+M+ A +F+ + + W ++I G+ + + ++ M+ + ++P+ T+
Sbjct: 53 ESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLML--TSNIKPDRFTF 110
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
L G + L GK++ + +++ ++F+ A I ++ G ++ A +VF
Sbjct: 111 PFSLK---GFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDM 167
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+V TWN M+S ++ +K+ + + VL+AC++ + +E G
Sbjct: 168 GDACEVVTWNIMLSG-------------YNRVKQFKIS----KMLLVLSACSKLKDLEWG 210
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+F + G G V + G + EA+ +M
Sbjct: 211 KHIFKYING-----------GIVEHMFAACGEMDEAQGVFDNM 242
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 182/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + S+ ++F M +RD+VSW++II G+ + G EA + M + +P E
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWM--RMEGPKPTEF 420
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
SVLS+C N L GKQ+H Y+L + + + +ALI++Y K G +E A R+F
Sbjct: 421 ALASVLSACG---NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ D+ +W AMI+ A + +E + +F+++ GLR + +TF+ VL+AC+ A LV+
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG F++M K+++ P EHYGC++DLL RAG LS+A+ + +MPF D V LL A
Sbjct: 538 LGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG V+ R+L+L+P G ++ L+NI+A +W A D+RK M G+ K P
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657
Query: 305 AYSLIE 310
+S I+
Sbjct: 658 GWSWIK 663
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y KNG + +F M R+VVSWT+II G VR G EA+ F M + V
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRS--RVE 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ L +CA + G L G+++H ++ +S F+ L +Y K G LE
Sbjct: 215 YDSYTFAIALKACA---DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M ++DV +W +I++L +E+ A+ F M+E + NE TF AV++ CA
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E G E H+++ + + ++ + + G L+ + M
Sbjct: 332 ARIEWG-EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEA 64
VK G + +A +F+ M ++D +SWT++I+G+V EA+ +FKNM L + P
Sbjct: 60 VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDP--- 116
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++ L+ A +N Y G+ +HGY ++ +V SVF+G+AL+D+Y K G + RVF
Sbjct: 117 -FILSLAHKACGLNSDVNY-GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVF 174
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +++V +W A+I+ L KEALV F EM + + TF L ACA + +
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234
Query: 185 LGLELFHSMLGK-FEV 199
G E+ + K F+V
Sbjct: 235 YGREIHAQAMKKGFDV 250
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 22/287 (7%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ + LFE M RDVVSWT+II V+ G A+ F M + V PNE
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM--RESDVSPNEY 319
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +V+S CA L + G+Q+H IL + S+ + +++ +Y K G L + +F
Sbjct: 320 TFAAVISGCANLAR---IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIF 376
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +W+ +I+ EA + M+ +G + E +VL+AC ++E
Sbjct: 377 HEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILE 436
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G +L +L +EH V +++ + G + EA + D A
Sbjct: 437 HGKQLHAYVLSIG-----LEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTA 490
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
++ HG +DL ++ R + L+P VLS HAGL
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPR--VGLRPDSVTFIGVLSACSHAGL 535
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ A +F+ D+VSWT++ING+ +G E I +F+ + V L R
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEK-IPRVGL-R 517
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T++ VLS+C AGLV+ G Y Y +I S +IDL + G L
Sbjct: 518 PDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKY----QISPSKEHYGCMIDLLCRAGRLS 573
Query: 119 RAIRVFKSMVI-KDVCTWNAMI 139
A + ++M +D W+ ++
Sbjct: 574 DAEHMIEAMPFHRDDVVWSTLL 595
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 192/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++NGD+ A LF M K++V+SWT++I G V+ G EA+ +F M+ + N +
Sbjct: 255 MITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRML-STNGAK 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+VSVL +C+ L GL G+QVH I + S F+ +ALI++Y K G L A
Sbjct: 314 PNQGTFVSVLGACSNL---AGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTA 370
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F + +D+ +WN +I++ A + KEA+ F EM++ G + +++T+V +L+AC+
Sbjct: 371 RKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS 430
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LVE GL+ F ++ ++ +HY C+VDL GRAG L EA F+ + +P A V
Sbjct: 431 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 490
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C +H V + + ++LLE++P++ G Y++LSNI+A +W A +R M +
Sbjct: 491 GALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDK 550
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 551 GLKKQPGCSWIE 562
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+++ + A LF M ++VVSW ++I+G+ +NG A+ +F+ M N+V
Sbjct: 136 MVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEK-MPERNVVS 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T +S+L+ C G + E + V TA+I G L+ A
Sbjct: 195 WN--TVMSMLAQC-GRIEEARRLFDRMPE---------RDVISWTAMI-----AGLLDEA 237
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +D+ +WN MI+ L N + A +F+EM +K N I++ ++T C +
Sbjct: 238 LDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK----NVISWTTMITGCVQE 293
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
E L++F ML P + G V +LG
Sbjct: 294 GESEEALKIFSRMLSTNGAKP---NQGTFVSVLG 324
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 114/230 (49%), Gaps = 26/230 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI K+G + A LF+ M + DV++WT++I+G+++ G EA +F + N+V
Sbjct: 73 MITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVV- 131
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
T+ +++ G + + +++ + +V +ID Y + G ++ A
Sbjct: 132 ----TWTAMV---GGYIRSNKISDAEKLFNEMPNKNVV----SWNTMIDGYAQNGRIDSA 180
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M ++V +WN ++S LA R +EA +FD M E+ + I++ A++ A
Sbjct: 181 MYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV----ISWTAMI-----A 231
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L++ L+LF M + + + ++ L + G L A++ MP
Sbjct: 232 GLLDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRRARKLFNEMP 276
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
C W MI++L+ + R EA +FDEM+E + IT+ V++ + ++E LF
Sbjct: 70 CNW--MITNLSKDGRIMEARRLFDEMREPDV----ITWTTVISGYIKCGMIEEARRLFDR 123
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ K VV G + R+ +S+A++ MP
Sbjct: 124 VDAKKNVVTWTAMVGGYI----RSNKISDAEKLFNEMP 157
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 196/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y ++ + +F+ M R+V SWT++ING+V NG EA+ +F++M ++ +
Sbjct: 274 LIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQV-IDGIE 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + VSVL +C+ GL G+Q+HG+ +R E+ V + ALID+Y K G L+ A
Sbjct: 333 PNRVSLVSVLPACSSF---SGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSA 389
Query: 121 IRVFKS-MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF+ + KD +W++MIS + + +EA++++D+M + G+R + IT V +L+AC+R
Sbjct: 390 RRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSR 449
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV GL ++ S++ + + P +E + C+VD+LGRAG L A +F+++MP EP SV G
Sbjct: 450 SGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWG 509
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL+ IHG +++ R L++L+P++ YV +SN++A RW+ ++R+ M +
Sbjct: 510 ALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKR 569
Query: 300 IRKIPAYSLIE 310
+RK+P S I
Sbjct: 570 LRKVPGCSWIS 580
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 11/252 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG-C-FGEAICVFKNMMGNVNLVRPN 62
Y K G+ + + +F+ M R+ SW +I G+ +G C F E F M ++ VRP+
Sbjct: 169 YCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQM-QMDEVRPD 227
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL----SVFMGTALIDLYGKVGCLE 118
T S+L C G ++G G+++H YI++NE+VL V +G LID+Y + +
Sbjct: 228 AYTISSLLPLCDG--DKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVV 285
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTAC 177
RVF M ++V +W AMI+ N EAL +F +M+ G+ N ++ V+VL AC
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPAC 345
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + G ++ H + E+ + ++D+ + G L A+ DA
Sbjct: 346 SSFSGLLSGRQI-HGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAIS 404
Query: 238 LGALLGACKIHG 249
+++ +HG
Sbjct: 405 WSSMISGYGLHG 416
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
L+F+++ ++V W S+ING+ +N + EA +F M + V P++ T LS+ +
Sbjct: 79 LVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSD--VLPDDFT----LSTLSK 132
Query: 76 LVNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
+ +E G L+ GK +HG +R V + +++ +Y K G E + +VF M I++ +
Sbjct: 133 VSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS 192
Query: 135 WNAMISSLA----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-LVELGLEL 189
WN +I+ A N RE E +M+ +R + T ++L C + + G EL
Sbjct: 193 WNVLIAGYAVSGNCNFRE-ETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGREL 251
Query: 190 FHSMLGKFEVVPIME---HYG-CVVDLLGRAG 217
H + K E+V ++ H G C++D+ R+
Sbjct: 252 -HCYIVKNELVLGLDSDVHLGCCLIDMYSRSN 282
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G+++SAI +FE M +R VVSWTS+I G+ R G ++ +F M +
Sbjct: 265 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM--EKEDLF 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +L +CA L L G+++HG+ILRN L + AL+D+Y K G L A
Sbjct: 323 PNSITMACILPACASL---AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + EA+ F+EM+ G+ +E++F+++L AC+ +
Sbjct: 380 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F+ M + P EHY C+VDLL RAG LS+A +F++ MP EPDA++ GA
Sbjct: 440 GLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGA 499
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+I+ V L +V + EL+P++ G YV+L+NI+A E+W LR+ + G+
Sbjct: 500 LLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 559
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 560 RKNPGCSWIE 569
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 36/240 (15%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++SA LF+ + RDV+SW S+I+G+V NG + + +F+ M+ + + + AT VSV
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML--LLGINTDLATMVSV- 257
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
E+ L+ L+D+Y K G L AI+VF++M +
Sbjct: 258 -------------------------ELTLN----NCLLDMYSKSGNLNSAIQVFETMGER 288
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
V +W +MI+ A ++ +F EM+++ L N IT +L ACA +E G E+
Sbjct: 289 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIH 348
Query: 191 -HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
H + F + + + +VD+ + G L A+ +P E D ++ +HG
Sbjct: 349 GHILRNGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMHG 405
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 24/186 (12%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY SVL CA L + G+++H I N++ + +G+ L+ +Y G L R+F
Sbjct: 103 TYCSVLQLCADL---KSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--------------ITF 170
+ + V WN +++ A +E+L +F M+E G+R E I++
Sbjct: 160 DKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISW 219
Query: 171 VAVLTACARAQLVELGLELFHSM--LGKFEVVPIMEHY-----GCVVDLLGRAGLLSEAK 223
++++ L E GL+LF M LG + M C++D+ ++G L+ A
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAI 279
Query: 224 EFMRSM 229
+ +M
Sbjct: 280 QVFETM 285
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + ++ A +F M KRD+ +WT +I +G E++ VF + M N +V
Sbjct: 192 LVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESL-VFFDRMRNQGIV- 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+ +CA L G + K +H YI L V +GTA+ID+Y K G +E A
Sbjct: 250 PDKVALVTVVYACAKL---GAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESA 306
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +++V TW+AMI++ + + ++AL +F M G+ N ITFV++L AC+ A
Sbjct: 307 RWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHA 366
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F SM ++ V P ++HY C+VDLLGRAG L EA E + MP E D + GA
Sbjct: 367 GLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGA 426
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH +DL V R LL+LQ + G YV+LSNI+A +W R M + G+
Sbjct: 427 LLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGL 486
Query: 301 RKIPAYSLIE 310
RKIP + IE
Sbjct: 487 RKIPGRTWIE 496
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV+ G ++ A LF+ M KR SW+ I+ G+ + G F +F+ ++ + + ++
Sbjct: 95 YVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPL--DDY 152
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V+ +C L + L G+ +H L+ + F+ L+D+Y + +E A ++F
Sbjct: 153 SAPVVIRACRDLKD---LKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIF 209
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
M +D+ TW MI +LA + E+LV FD M+ +G+ +++ V V+ ACA+
Sbjct: 210 VKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAK 264
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 182/311 (58%), Gaps = 8/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
M+D Y K A +F+ M R+ VSW S+I + ++G +A+ V+ MG N
Sbjct: 256 MVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVY---MGARNTGE 312
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P + SVL++CAGL+ GL G+ +H +R+ I ++F+ +AL+D+YGK G +E
Sbjct: 313 EPTDFMVSSVLTTCAGLL---GLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVED 369
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
A +VF M +++ TWNAMI A + AL +FD M + G N IT V V+TAC+
Sbjct: 370 AEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACS 429
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
R L + G ELF +M +F V P EHY CVVDLLGRAG+ A E ++ MP P SV
Sbjct: 430 RGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVW 489
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGACK+HG +L +L EL P+ G +V+LSN+ A RW ATD+RK M
Sbjct: 490 GALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNV 549
Query: 299 GIRKIPAYSLI 309
GI+K P S I
Sbjct: 550 GIKKEPGCSWI 560
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 16/234 (6%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR- 60
+D Y K G + A LFE M R+V++W +++ V +G + FK G +R
Sbjct: 156 MDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDG---RPLETFKAYFG----LRE 208
Query: 61 ----PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
PN + + ++CAG + L LG+Q HG+++ + V + A++D YGK C
Sbjct: 209 AGGMPNVVSVCAFFNACAGAMF---LSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRC 265
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+A VF M +++ +W +MI + A + E++AL ++ + G + +VLT
Sbjct: 266 AGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTT 325
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
CA + G L H++ + + + +VD+ G+ G + +A++ MP
Sbjct: 326 CAGLLGLNFGRAL-HAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMP 378
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VVS+T+ I+G ++ A+ F M+ V L RPN+ T+ S + A +G
Sbjct: 76 VVSFTAFISGAAQHARPLAALSAFAAML-RVGL-RPNDFTFPSAFKAAACAPPRCST-VG 132
Query: 86 KQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
Q+H LR + F+ A +D+Y K GCL A R+F+ M ++V WNA++++
Sbjct: 133 PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVI 192
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
+ R E + ++E G N ++ A ACA A + LG E FH +
Sbjct: 193 DGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLG-EQFHGFV 241
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 84 LGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
LG+ H LR L F+ L++LY K+ A S V ++ A IS
Sbjct: 27 LGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGA 86
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVL--TACARAQLVELGLELFHSMLGKFEVV 200
A ++R AL F M GLR N+ TF + ACA + +G ++ H++ +F +
Sbjct: 87 AQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQI-HALALRFGYL 145
Query: 201 PIMEHYGC-VVDLLGRAGLLSEAKEFMRSMP 230
P C +D+ + G L A+ MP
Sbjct: 146 PGDPFVSCAAMDMYFKTGCLGLARRLFEEMP 176
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 186/312 (59%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFK--NMMGNVNL 58
++D Y K G+MD + +F M D++SW ++I V F + F+ N M L
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVH---FDDCTVGFQMINEMRTEGL 519
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+EAT + +L C+ L GK++HGYI ++ +V +G ALI++Y K G LE
Sbjct: 520 M-PDEATVLGILPMCSLLAVRRQ---GKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLE 575
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
I+VFK M KDV TW A+IS+ K+AL F +M+ G+ + + F+A + AC+
Sbjct: 576 NCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS 635
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +V+ GL F M + + P MEHY CVVDLL R+GLL++A+EF+ SMP +PDAS+
Sbjct: 636 HSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLW 695
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+ G ++ V +++LEL G YV++SNI+A L +W++ +R +M
Sbjct: 696 GALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTK 755
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 756 GLKKEPGSSWIE 767
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 17/229 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN--MMGNVNL 58
+ID Y + D+D+A +FE M RD VSW S+I+G+ NG + +A+ ++ M G V
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-- 219
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T SVL +C L+ + G VHG I + I V +G L+ +Y K L
Sbjct: 220 --PDCFTMSSVLLACGSLM---AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +KD TWN MI A R + ++ +F +M + G + ++ + + AC
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACG 333
Query: 179 RAQLVELGLELFHSMLGK-FEVVPIMEHYGC--VVDLLGRAGLLSEAKE 224
++ +++G + ++G FE + C ++D+ + G L A+E
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTV----ACNILIDMYAKCGDLLAAQE 378
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 127/252 (50%), Gaps = 14/252 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+ +A +F+ +D V+W S+ING+ ++G + E + FK M +
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER---K 419
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+V +LS + L + + G+ +H +++ + +G +L+D+Y K G ++
Sbjct: 420 PDSVTFVLLLSIFSQLAD---INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M D+ +WN +I+S M +EM+ +GL +E T + +L C+
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536
Query: 181 QLVELGLELFHSMLGK--FEV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ G E+ H + K FE VPI ++++ + G L + + M E D
Sbjct: 537 AVRRQGKEI-HGYIFKSGFESNVPIG---NALIEMYSKCGSLENCIKVFKYMK-EKDVVT 591
Query: 238 LGALLGACKIHG 249
AL+ A ++G
Sbjct: 592 WTALISAFGMYG 603
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y + D S++ +F ++ +V W SII NG F +A+ + M +
Sbjct: 60 LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM--REKKL 117
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T+ SV++SCA +++ L LG VH + + +++G ALID+Y + L+
Sbjct: 118 QPDAFTFPSVINSCARILD---LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDN 174
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF+ M +D +WN++IS SN ++AL M+ + + G+ + T +VL AC
Sbjct: 175 ARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGS 234
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
V+ G+ V ++E G D++ GLLS +F R
Sbjct: 235 LMAVKEGV----------AVHGVIEKIGIAGDVIIGNGLLSMYFKFER 272
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A +F M +D V+W ++I G+ + G ++ +F +M ++ P+
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM---IDGFVPDML 323
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ S + +C G L +GK VH Y++ + LID+Y K G L A VF
Sbjct: 324 SITSTIRACG---QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVF 380
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ KD TWN++I+ + KE L F MK + + + +TFV +L+
Sbjct: 381 DTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLS 430
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLAS 144
+ VH I+ + + LSV LI Y +V ++ VF+S+ +V WN++I +L
Sbjct: 39 RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIM 203
N +AL + EM+EK L+ + TF +V+ +CAR +ELG + H+M FE +
Sbjct: 99 NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK---IHGAVDLCHE 256
+ ++D+ R L A+ M S + G C A+D+ H+
Sbjct: 159 GN--ALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK 212
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 185/310 (59%), Gaps = 12/310 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + + +F + +RD +SW SII G V+NG F E + F+ M+ + ++
Sbjct: 280 LIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML--MAKIK 337
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P ++ S++ +CA L L+LGKQ+HGYI RN ++F+ ++L+D+Y K G + A
Sbjct: 338 PKSYSFSSIMPACAHLTT---LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 394
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M ++D+ +W AMI A + + +A+ +F++M+ +G++A VLTAC+
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA-------VLTACSHG 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ + F+SM F + P +EHY V DLLGRAG L EA +F+ M P S+
Sbjct: 448 GLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWAT 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +D+ +V R+LE+ P + G Y++L+NI++ RW A R +M GI
Sbjct: 508 LLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGI 567
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 568 RKTPACSWIE 577
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
DS +FE M ++D+VSW +II G RNG + E + + + M G NL +P+ T SVL
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM-GGANL-KPDSFTLSSVLP 247
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
A V+ + GK++HG +R + +++ ++LID+Y K + + RVF + +D
Sbjct: 248 LIAENVD---ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERD 304
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
+WN++I+ N E L F +M ++ +F +++ ACA + LG +L H
Sbjct: 305 GISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL-H 363
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + + +VD+ + G + AK+ M S ++G C +HG
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG-CALHG 420
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 37/211 (17%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ ++ LF + ++W S+I + +G +++ F M+ + + P+ + SVL
Sbjct: 56 LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASG--LYPDHNVFPSVL 113
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE------------ 118
SCA L++ L LG+ +HGYI+R + ++ G AL+++Y K+ LE
Sbjct: 114 KSCALLMD---LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEV 170
Query: 119 --------RAIR------------VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
R++R +F+ M KD+ +WN +I+ A N +E L M EM
Sbjct: 171 FDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM 230
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLEL 189
L+ + T +VL A + G E+
Sbjct: 231 GGANLKPDSFTLSSVLPLIAENVDISRGKEI 261
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 190/315 (60%), Gaps = 14/315 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+G+ K GD++ + LF+ M +R VVSW +I+ + GEA +F+ M+
Sbjct: 180 MINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQG--FE 237
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGY-----ILRNEIVLSVFMGTALIDLYGKVG 115
P++AT V+VL CA L G + G+ +H Y +LR V+SV G +L+D Y K G
Sbjct: 238 PDDATLVTVLPVCARL---GDVDAGEWIHSYADGKGLLRK--VISV--GNSLVDFYCKCG 290
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
LE A +VF M K+V +WNAMIS L N + + + +F++M KG+ ++ TFV VL
Sbjct: 291 NLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLA 350
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
CA A V+ G E+F SM KF++ P +EHYGCVVDLLGR G + EA + +R+MP P+A
Sbjct: 351 CCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNA 410
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
++ GALL AC+ HG ++ + L+ L+P + G YV+LSN++A +WN +R M
Sbjct: 411 ALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLM 470
Query: 296 VEAGIRKIPAYSLIE 310
GI+K P S ++
Sbjct: 471 QGVGIKKNPGQSALQ 485
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P E + V S+C G + +V +L E+V+ M I+ + K+G LE
Sbjct: 144 PVEIGLLEVYSNC------GKMEDANKVFDEMLHREVVVWNIM----INGFCKMGDLEIG 193
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++FK M + V +WN MIS LA ++ EA +F EM E+G ++ T V VL CAR
Sbjct: 194 LKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARL 253
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
V+ G E HS GK + ++ +VD + G L A + M
Sbjct: 254 GDVDAG-EWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEM 302
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G + A +F+ M++RD+V W+++I+G+ + EA+ +F M+ ++
Sbjct: 294 MLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSV-- 351
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +SV+S+C+ + G L +H Y+ R+ ++ + ALID+Y K G L +A
Sbjct: 352 PDQITMLSVISACSHV---GALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKA 408
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M K+V +W++MI++ A + A+ +F MKE + N +TF+ VL AC A
Sbjct: 409 REVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHA 468
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +LF SM+ + + P EHYGC+VDL RA L +A E + +MPF P+ + G+
Sbjct: 469 GLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGS 528
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC++HG +L +RLLEL+P H G VVLSNI+A +RWN +RK+M GI
Sbjct: 529 LMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGI 588
Query: 301 RKIPAYSLIE 310
K A S IE
Sbjct: 589 SKEKASSRIE 598
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 137/283 (48%), Gaps = 38/283 (13%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A LLF+ M D V+W II+G+ +NG + +A+ +F++M + ++P+ +VLS+C
Sbjct: 175 ARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSD--MKPDSVILCTVLSAC 232
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV---------- 123
+ G L G+ +H ++ N + + TALI++Y G ++ A ++
Sbjct: 233 G---HAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLI 289
Query: 124 ---------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
F M+ +D+ W+AMIS A + + +EAL +FDEM +K
Sbjct: 290 VSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKR 349
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
++IT ++V++AC+ + H+ + + + ++D+ + G L +A
Sbjct: 350 SVPDQITMLSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKA 408
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
+E +MP + +++ A +HG D ++ RR+ E+
Sbjct: 409 REVFENMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY K GDM+SA LF M +++ VSW+++I+G+ RN EA+ F MM +
Sbjct: 267 IVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG--IN 324
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+ S L +CA + L GKQVHGY++R + + ++LID+Y K G LE +
Sbjct: 325 PEQYTFSSCLCACASI---AALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS 381
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF M K DV WN MIS+LA N ++A+ MF++M E GL+ + ITF+ +L+AC+
Sbjct: 382 CCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSH 441
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ GL F +M V P EHY C++DLLGRAG E + +M +PD V
Sbjct: 442 SGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWS 501
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C+IH ++L +V R++EL+P+ YV L++++A L +W +R+ M E
Sbjct: 502 ALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKF 561
Query: 300 IRKIPAYSLIE 310
IRK S I+
Sbjct: 562 IRKERGISWID 572
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 18/205 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM----MGNV 56
M+ GY K GD+++A LF+ M+++DVVSW +I+ + + GCF EAI ++++ MG
Sbjct: 135 MLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF- 193
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N ++ VL C L L L KQVHG +L + ++ + ++++D Y K G
Sbjct: 194 -----NAFSFAGVLILCVKLKE---LQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGE 245
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A +F M++KD+ W ++S A A +F +M EK N +++ A+++
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEK----NPVSWSALISG 301
Query: 177 CARAQLVELGLELFHSMLGKFEVVP 201
AR L L+ F M+ KF + P
Sbjct: 302 YARNSLGHEALDYFTKMM-KFGINP 325
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 186/311 (59%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G + A +F+ M RD VSW++++ G+V+ G A+ VFKNM+ V V+
Sbjct: 203 VLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMV--VQGVK 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NEA V+ LS+ A L G L GK VH I R + +S+ +G AL+D+Y K G + A
Sbjct: 261 ANEAAIVTALSAAAQL---GLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M +DV WN+MI LA++ +A+ +F++ +G ITFV VL AC+R
Sbjct: 318 KEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRT 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M K+ + MEHYGC+VDLL RAGL+ EA E + M PD + G
Sbjct: 378 GLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGT 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L ACK HG VDL VG +L+EL P H G YV+L++I+A ++W+ +RK M G
Sbjct: 438 VLSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGT 497
Query: 301 RKIPAYSLIEA 311
K +SL+EA
Sbjct: 498 SKSAGWSLMEA 508
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 97 IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
+V V A++ Y + G + A VF M ++D +W+ ++ + AL +F
Sbjct: 193 LVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFK 252
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
M +G++ANE V L+A A+ L+E G + H ++ + V M +VD+ +
Sbjct: 253 NMVVQGVKANEAAIVTALSAAAQLGLLEQG-KFVHEVIKRAGVAMSMNLGAALVDMYSKC 311
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G ++ AKE +MP+ D +++ HG
Sbjct: 312 GSVAAAKEVFDAMPWR-DVFAWNSMICGLATHG 343
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 15/310 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+ Y + G + A+ LF+++ +D V WT++I+G VRN +A+ +F+ M +V +
Sbjct: 195 MINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQLSVFYL- 253
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
A SS AG VH ++ ++ LS F+G ALI++Y + G + A
Sbjct: 254 --PARIWVRWSSGAG------------VHSFVENQKMELSNFVGNALINMYSRCGDINVA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVFK M KDV ++N MIS LA + EA+ +F +M +G R N++T VA+L AC+
Sbjct: 300 KRVFKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHG 359
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+++GLE+F+SM F V P +EHYGC+VDLLGR G L EA F+ +M EPD +LGA
Sbjct: 360 GLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRVGRLEEAYRFIENMLIEPDHIMLGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIHG ++L ++ +RL E + G YV+LS+I+A +W +T++R++M E+GI
Sbjct: 420 LLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSHIYASSGKWKESTEIRESMRESGI 479
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 480 EKEPGCSTIE 489
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +S+L +C N + +H I+R F+ LI + + ++ A VF
Sbjct: 31 TLISLLRNCK---NNAQV---PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVF 84
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +V + AMI S+ R + + ++ M + + +VL AC + E
Sbjct: 85 RYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECRE 144
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ++ G V + ++++ G++G L++AK+ MP
Sbjct: 145 IHSQVLKLGFGSSRSVGLK-----LMEIYGKSGELADAKKVFDEMP 185
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 182/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + S+ ++F M +RD+VSW++II G+ + G EA + M + +P E
Sbjct: 363 YAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWM--RMEGPKPTEF 420
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
SVLS+C N L GKQ+H Y+L + + + +ALI++Y K G +E A R+F
Sbjct: 421 ALASVLSACG---NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ D+ +W AMI+ A + +E + +F+++ GLR + +TF+ VL+AC+ A LV+
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG F++M K+++ P EHYGC++DLL RAG LS+A+ + +MPF D V LL A
Sbjct: 538 LGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG V+ R+L+L+P G ++ L+NI+A +W A D+RK M G+ K P
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657
Query: 305 AYSLIE 310
+S I+
Sbjct: 658 GWSWIK 663
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y KNG + +F M R+VVSWT+II G VR G EA+ F M + V
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRS--RVE 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T+ L +CA + G L G+++H ++ +S F+ L +Y K G LE
Sbjct: 215 YDSYTFAIALKACA---DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M ++DV +W +I++L +E+ A+ F M+E + NE TF AV++ CA
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E G E H+++ + + ++ + + G L+ + M
Sbjct: 332 ARIEWG-EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-VRPNEA 64
VK G + +A +F+ M ++D +SWT++I+G+V EA+ +FKNM L + P
Sbjct: 60 VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDP--- 116
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++ L+ A +N Y G+ +HGY ++ +V SVF+G+AL+D+Y K G + RVF
Sbjct: 117 -FILSLAHKACGLNSDVNY-GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVF 174
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +++V +W A+I+ L KEALV F EM + + TF L ACA + +
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234
Query: 185 LGLELFHSMLGK-FEV 199
G E+ + K F+V
Sbjct: 235 YGREIHAQAMKKGFDV 250
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 22/287 (7%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ + LFE M RDVVSWT+II V+ G A+ F M + V PNE
Sbjct: 262 YNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM--RESDVSPNEY 319
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +V+S CA L + G+Q+H IL + S+ + +++ +Y K G L + +F
Sbjct: 320 TFAAVISGCANLAR---IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIF 376
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +W+ +I+ + EA + M+ +G + E +VL+AC ++E
Sbjct: 377 HEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILE 436
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCV----VDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G +L +L +EH V +++ + G + EA + D A
Sbjct: 437 HGKQLHAYVLSIG-----LEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTA 490
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
++ HG +DL ++ R + L+P VLS HAGL
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPR--VGLRPDSVTFIGVLSACSHAGL 535
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ A +F+ D+VSWT++ING+ +G E I +F+ + V L R
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEK-IPRVGL-R 517
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T++ VLS+C AGLV+ G Y Y +I S +IDL + G L
Sbjct: 518 PDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKY----QISPSKEHYGCMIDLLCRAGRLS 573
Query: 119 RAIRVFKSMVI-KDVCTWNAMI 139
A + ++M +D W+ ++
Sbjct: 574 DAEHMIEAMPFHRDDVVWSTLL 595
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 191/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ +A +F+ + +R +V+W S+I+G+ +NG EAI +F M V P+ A
Sbjct: 156 YGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRM--KETGVEPDSA 213
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVLS+CA L G LG VH YI+ N + L+V +GT+LI++Y + G + +A VF
Sbjct: 214 TFVSVLSACAHL---GAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVF 270
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
SM ++V W AMIS +N +A+ +F EM+ GL N ITFVAVL+ACA A LV
Sbjct: 271 DSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVN 330
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR-SMPFEPDASVLGALLG 243
G LF S+ ++ +VP +EH C+VD+LGRAGLL EA F++ +P P ++L A+LG
Sbjct: 331 EGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLG 390
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
ACK+H DL +V LL +P++ YV+LSNI+A R ++ +R M+ ++K
Sbjct: 391 ACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQ 450
Query: 304 PAYSLIE 310
YS +E
Sbjct: 451 VGYSTVE 457
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 138/280 (49%), Gaps = 15/280 (5%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + +F + D +TS+I ++ F F + M N V P+ T+ S
Sbjct: 58 GSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSN-VSPSNYTFTS 116
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V+ SCA L L G+ VHG++L + L V++ AL+ LYGK G L A +VF +
Sbjct: 117 VIKSCADL---SALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIR 173
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+ + WN+MIS N KEA+ +FD MKE G+ + TFV+VL+ACA LG
Sbjct: 174 ERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCW 233
Query: 189 LFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ ++G ++ ++ ++++ R G +S+A+E SM E + A++
Sbjct: 234 VHEYIVGNGLDLNVVLG--TSLINMYIRCGNVSKAREVFDSMK-ERNVVAWTAMISGYGT 290
Query: 248 HG----AVDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL 282
+G AV+L HE+ R L P VLS HAGL
Sbjct: 291 NGYGSQAVELFHEMRRN--GLFPNSITFVAVLSACAHAGL 328
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y++ G++ A +F++M +R+VV+WT++I+G+ NG +A+ +F M N +
Sbjct: 253 LINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNG--LF 310
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+V+VLS+C AGLVNEG Y +V V L+D+ G+ G L+
Sbjct: 311 PNSITFVAVLSACAHAGLVNEGRRLFASIREEY----HLVPGVEHNVCLVDMLGRAGLLD 366
Query: 119 RAIRVFKSMVIKD 131
A K + ++
Sbjct: 367 EAYNFIKEEIPEN 379
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 192/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G +K G D A +LF+ M +R++VSW ++++G+V+ F +A+ VF M V
Sbjct: 171 MVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM--RARGVD 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + +C G G L G++VH ++ ++ I + + TA++D+Y K GC+E A
Sbjct: 229 GNVFVAATAVVACTG---AGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
RVF+++ + K + TWN MI A + R ++AL +F M+ +G+ +++T V VLTACA
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACA 345
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A ++ G F+ + ++ + P MEHYGC+VDL GRAG L EAK+ ++ MP EPD VL
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL GA KIHG VDL +G R++EL P++ GRYV+L+N+ A RW +R+ M E
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465
Query: 299 GIRKIPAYSLIE 310
+ K S+IE
Sbjct: 466 NVSKEAGRSVIE 477
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL----------------------RNEI 97
RP+ T+ +L S L +L Q+H +L R ++
Sbjct: 98 RPDHFTFPQILPSAQPL------HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDL 151
Query: 98 VLSVFMG----------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VF G T ++ K+G + A +F M +++ +WNAM+S R
Sbjct: 152 ASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACR 211
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+AL +FDEM+ +G+ N + AC A + G E+ H + + + +
Sbjct: 212 FLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV-HRWVEQSGIQMDEKLAT 270
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDA-SVLGALLGACKIHG 249
VVD+ + G + EA ++P + ++G +HG
Sbjct: 271 AVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHG 313
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 181/300 (60%), Gaps = 5/300 (1%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
MD A+ +FE++ +D VSW SI+ GF ++G +A+ F+NM ++ + + +VL
Sbjct: 356 MDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVI--DHYAFSAVL 413
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC+ L L LG+QVH +L++ + F+ ++LI +Y K G +E A + F +
Sbjct: 414 RSCSDLAT---LQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKD 470
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
WN++I A + R K AL +F MK++ ++ + ITFVAVLTAC+ LVE G
Sbjct: 471 SSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFL 530
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
SM + + P MEHY C++DLLGRAG L EAK + +MPFEPDA V LLGAC+ G
Sbjct: 531 KSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGD 590
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
++L +V LLEL+P+ YV+LS++ L RWN +++ M E G++K+P +S IE
Sbjct: 591 IELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIE 650
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G++ A +F +RD VSW ++I GFV G F A+ K+M V
Sbjct: 40 IISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAV- 98
Query: 61 PNEATYVSVLS--SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ ++ S+L +C G V +G+QVH +++ +VF G+AL+D+Y K +E
Sbjct: 99 -DGYSFGSILKGVACVGYVE-----VGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV----- 173
A VFKS+ I++ TWNA+IS A A + D M+ +G+ ++ TF +
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212
Query: 174 ------LTACARAQLVELGL 187
LT A++V+ GL
Sbjct: 213 DPDLHKLTTQVHAKIVKHGL 232
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 150/297 (50%), Gaps = 21/297 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y + G ++ A +F+ ++ RD+V+W S++ ++ N EA +F M V
Sbjct: 242 IITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEM--QVLGF 299
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--VGCL 117
P+ TY SV+S+ ++G GK +HG +++ + V + +LI +Y K +
Sbjct: 300 EPDIYTYTSVISAAFEGSHQGQ---GKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSM 356
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A+ +F+S+ KD +WN++++ + + ++AL F+ M+ + + + F AVL +C
Sbjct: 357 DEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSC 416
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ ++LG ++ H ++ K P ++ + + G++ +A++ + P D+S+
Sbjct: 417 SDLATLQLGQQV-HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP--KDSSI 473
Query: 238 -LGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--ERWN 286
+L+ HG A+DL + R ++L H VL+ H GL E W+
Sbjct: 474 AWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLD--HITFVAVLTACSHIGLVEEGWS 528
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 41/293 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++ A +F+++ R+ V+W ++I+G+ + G G A + M + V
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCM--ELEGVE 198
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ +L+ L QVH I+++ + + A+I Y + G +E A
Sbjct: 199 IDDGTFAPLLTLLDDPDLHK---LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDA 255
Query: 121 IRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF + +D+ TWN+M+++ N++E+EA +F EM+ G + T+ +V++A
Sbjct: 256 ERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFE 315
Query: 180 AQ-----------LVELGLELF--------------HS-----MLGKFEVVPIMEH--YG 207
+++ GLE HS L FE + +H +
Sbjct: 316 GSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWN 375
Query: 208 CVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
++ ++GL +A +F MRS D A+L +C + L +V
Sbjct: 376 SILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQV 428
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
LY H +++ S++ +I Y K G + A ++F +D +WN MI+
Sbjct: 14 ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+ + AL MK G + +F ++L A VE+G ++ HSM+ K
Sbjct: 74 GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV-HSMMVK 128
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G + A +F++M +DVVSW +++ + GC+ E + VF NMM + + R
Sbjct: 213 MISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVF-NMMLDDSAER 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+VLS+CA L G L G+ VH YI ++ I + F+ TAL+D+Y K G +++A
Sbjct: 272 PDGFTLVNVLSACASL---GSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ +DV TWN++I+ L+ + K+AL +F EM +G + N ITF+ VL+AC
Sbjct: 329 LEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHV 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ +LF M + + P +EHYGC+VDLLGR G EA+E + +P + + +L +
Sbjct: 389 GLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLES 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK G ++ + RLLE P+ YV +SN++A RW+ A ++R M +
Sbjct: 449 LLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERV 508
Query: 301 RKIPAYSLIE 310
+K P S+IE
Sbjct: 509 KKNPGCSMIE 518
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
S+I + + A+ VF+ M+ + V P++ ++ VL +CA G G+Q+H
Sbjct: 79 NSVIRAYANSSTPEIALTVFREML--LGPVFPDKYSFTFVLKACAAFC---GFEEGRQIH 133
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
G +++++V VF+ LI++YG+ G E A +V M ++D +WN+++S+ +
Sbjct: 134 GLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVE 193
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV-----VPIME 204
EA +FDEM+E+ + ++ +++ A A LV+ E+F SM K V V
Sbjct: 194 EARALFDEMEERNVE----SWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYA 249
Query: 205 HYGCVVDLLGRAG-LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251
H GC ++L +L ++ E PD L +L AC G++
Sbjct: 250 HVGCYNEVLEVFNMMLDDSAE-------RPDGFTLVNVLSACASLGSL 290
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 47/250 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y ++G + A + + M RD VSW S+++ ++ G EA +F M
Sbjct: 151 LINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEME------- 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ V + +I Y G ++ A
Sbjct: 204 ------------------------ERNVESWNF-------------MISGYAAAGLVKEA 226
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
VF SM +KDV +WNAM+++ A E L +F+ M + R + T V VL+ACA
Sbjct: 227 REVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACAS 286
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G E H + K + +VD+ + G + +A E R + D S
Sbjct: 287 LGSLSQG-EWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTS-KRDVSTWN 344
Query: 240 ALLGACKIHG 249
+++ +HG
Sbjct: 345 SIITGLSVHG 354
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 184/315 (58%), Gaps = 8/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNVN 57
+++ Y K G ++ A LF+ M +R+V+SW+ +ING+V G + EA+ +F+ M N
Sbjct: 133 VVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEV 192
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
V PN+ T +VLS+C L G L GK VH YI + + + + +GTALID+Y K G L
Sbjct: 193 FVSPNKFTMSTVLSACGRL---GALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSL 249
Query: 118 ERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLT 175
ERA RVF ++ KDV ++AMI LA E +F EM + N +TFV +L
Sbjct: 250 ERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILG 309
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC L+ G F M +F + P ++HYGC+VDL GR+GL+ EA+ F+ SMP EPD
Sbjct: 310 ACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 369
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G+LL ++ G + C +RL+EL P + G YV+LSN++A RW +R M
Sbjct: 370 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEM 429
Query: 296 VEAGIRKIPAYSLIE 310
GI+K+P S +E
Sbjct: 430 EVKGIKKVPGCSYVE 444
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 45/275 (16%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGE---AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78
LK + W II V N + I V+ M + V P+ T+ +L S N
Sbjct: 19 LKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHC--VSPDFHTFPFLLPS---FHN 73
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
L LG++ H IL + F+ T+L+++Y G L A+R+F V KD+ WN++
Sbjct: 74 PIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSV 133
Query: 139 ISSLASNSREKEALVMFDEMKEKG------------------------------------ 162
+++ A A +FDEM E+
Sbjct: 134 VNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVF 193
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ N+ T VL+AC R +E G + HS + K+ V + ++D+ + G L A
Sbjct: 194 VSPNKFTMSTVLSACGRLGALEQG-KWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERA 252
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
K ++ + D A++ ++G D C +V
Sbjct: 253 KRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQV 287
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 196/311 (63%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + D+ +A +F+ + +R + WT++I+G+ +N C EA+ +F M+ V +
Sbjct: 167 LVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELFDQMI--VEGLE 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT SVLS+CA G L LG+++H ++ I + V +GTAL+ +Y K G + A
Sbjct: 225 PNGATLASVLSACA---QSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F ++ ++ TWNAMI LA + KEAL F +++++ + N+ITFV VL+AC A
Sbjct: 282 QKLFDTISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ +G ++FH M + + P +EHYGC+VDLLGR G L EA+E ++ M ++ D +LGA
Sbjct: 342 GLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADVVILGA 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+CK HG +++ V + +L L+P + G YVVLSN++A RW LRK M +
Sbjct: 402 LLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNL 461
Query: 301 RKIPAYSLIEA 311
+K P +SL+++
Sbjct: 462 KKTPGWSLVDS 472
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 5/180 (2%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++GD+ A+ LF N + + W ++I + EA+ ++ +M ++++ P + T+
Sbjct: 72 ESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMR-RLDVI-PGKHTF 129
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L +C+ N L QVH ++L+ + L++ + L+ Y + A RVF
Sbjct: 130 PFLLKACS---NFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDE 186
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ + + W MIS A N EAL +FD+M +GL N T +VL+ACA++ ++LG
Sbjct: 187 VSERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLG 246
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 194/321 (60%), Gaps = 16/321 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-- 58
++DGY K D+ +A +F M +RDVVSW+++I+G V+ G EA+ +F+ MM N
Sbjct: 132 LLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEHREALALFE-MMENAAARS 190
Query: 59 -------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
R N+ T VSVL +CA L G L G+ VH + L++ + T+L+D+Y
Sbjct: 191 VEDGGGGARANDVTMVSVLGACANL---GDLERGRWVHRCLRERGFPLNLKLATSLVDMY 247
Query: 112 GKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
K G + A+ +F ++ ++ DV WNA+I LA + E++ +F EM+ G+ +EIT
Sbjct: 248 AKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIFQEMQCAGVAPDEIT 307
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ +L+AC LV+ + F S+ + + P +EHY C+VD+LGRAG L E ++SM
Sbjct: 308 YLCLLSACVHGGLVDEAWKFFRSLEAQ-GLRPHVEHYACLVDVLGRAGRLEEVYGVVKSM 366
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289
P +P SVLGA L AC +HG V+L VGR+L++LQP H GRY+ LSNI+A RW A
Sbjct: 367 PMKPSVSVLGAFLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAVARRWQEAK 426
Query: 290 DLRKAMVEAGIRKIPAYSLIE 310
RK M + G++K+P +S I
Sbjct: 427 KARKVMEDRGVKKVPGFSEIH 447
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--- 161
AL+D Y K L A +VF M +DV +W+AMI +EAL +F+ M+
Sbjct: 130 NALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAAR 189
Query: 162 -------GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214
G RAN++T V+VL ACA +E G H L + ++ +VD+
Sbjct: 190 SVEDGGGGARANDVTMVSVLGACANLGDLERG-RWVHRCLRERGFPLNLKLATSLVDMYA 248
Query: 215 RAGLLSEAKEFMRSMPFEP-DASVLGALLGACKIHG 249
+ G + EA E ++P E D + A++G +HG
Sbjct: 249 KCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHG 284
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 200/316 (63%), Gaps = 15/316 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K G+M A +LF + +RDVVSW ++I+G VR G A+ +F+ M MG
Sbjct: 215 MITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQ--- 271
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL----SVFMGTALIDLYGKV 114
+P+ T +S+LS+CA + G + +G+++H + +E+ L +V +G ALID+Y K
Sbjct: 272 -KPDVVTMLSLLSACA---DSGDIDVGRRLHSSL--SEMFLRTGFTVILGNALIDMYAKC 325
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G ++ A++VF M KDV TWN++I LA + E++ +F +M ++ +R +EITFVAVL
Sbjct: 326 GSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVL 385
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
AC+ +V+ G E F+ M + + P ++HYGC+VD+LGRAGLL EA EF+ +M EP+
Sbjct: 386 IACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPN 445
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + LLGAC++HG ++L R+LL+ + G YV+LSNI+A W+ + +RK
Sbjct: 446 SVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKL 505
Query: 295 MVEAGIRKIPAYSLIE 310
M ++G+ K ++++
Sbjct: 506 MDDSGVNKQAGRTVVD 521
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 23/259 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEATY 66
G + A L+F+ + + D+ + ++I G +A+ ++ M G+ VRP++ T+
Sbjct: 56 GAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITF 115
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL +C + GG G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 116 PFVLRACTAM-GAGGT--GAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDG 172
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+D W+AMI+ A A +FDE K + +++ ++TA A+ +
Sbjct: 173 RAREDAVAWSAMITGCARRGDIVAARKLFDECPVK----DHVSWNVMITAYAKRGEMAPA 228
Query: 187 LELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
LF+ + + +VV I H C G E E M+ M +PD + +LL
Sbjct: 229 RVLFNRIPER-DVVSWNAMISGHVRC-----GSHVYAMELFEQMQRMGQKPDVVTMLSLL 282
Query: 243 GACKIHGAVDLCHEVGRRL 261
AC G +D VGRRL
Sbjct: 283 SACADSGDID----VGRRL 297
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 181/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++D A LF+ ++ VV+W ++I+G+ +NG AI +FK MM PN
Sbjct: 355 YNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTE--FTPNAV 412
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T ++LS+CA L G L GK VH I + ++++ TAL+D+Y K G + A ++F
Sbjct: 413 TITTILSACAQL---GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLF 469
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
SM K+ TWN MI + EAL +++EM G + +TF++VL AC+ A LV
Sbjct: 470 DSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVG 529
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+FH+M+ K+ + P++EHY C+VD+LGR+G L +A EF++ MP EP +V G LLGA
Sbjct: 530 EGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGA 589
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH D+ RL EL P G YV+LSNI++ + +A +R+ + + + K P
Sbjct: 590 CMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSP 649
Query: 305 AYSLIE 310
+LIE
Sbjct: 650 GCTLIE 655
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+++A LLF + + D++++ ++I+GF NG ++ +F+ ++ + R
Sbjct: 250 LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE--R 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +T V ++ + G L+L +HG+ +++ I+L+ + TA +Y K+ ++ A
Sbjct: 308 VSSSTIVGLIPLHSPF---GHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLA 364
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F K V WNAMIS N + A+ +F EM + N +T +L+ACA+
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G + H ++ + P + +VD+ + G +SEA + SM E +
Sbjct: 425 GSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNT 482
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 483 MIFGYGLHG 491
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF ++ K D+ + ++ GF N +I ++ ++ N NL P+ TY +++C+
Sbjct: 66 LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNL-SPDNFTYAFAVAACS-- 122
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
N+ L L +H + + + +VF+G+AL+DLY K + A +VF M +D WN
Sbjct: 123 -NDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWN 178
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
MI+ L N +++ +F EM G+R + T AVL A A Q +++G+
Sbjct: 179 TMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGM 229
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M +RD V W ++ING V+N CF ++I +F+ M+ + VR
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG--VR 206
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +T +VL + A L L +G + L+ ++ T LI LY K G + A
Sbjct: 207 VDSSTVTAVLPAAAELQE---LKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
+F+ + D+ +NAMIS +N + ++ +F E+ G R + T V ++
Sbjct: 264 RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
++D Y K G++ A LF++M +++ V+W ++I G+ +G EA+ ++ M+ +L
Sbjct: 452 LVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEML---HLGY 508
Query: 60 RPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
P+ T++SVL +C AGLV EG V+ Y R E ++ + ++D+ G+ G L
Sbjct: 509 NPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKY--RIEPLIEHY--ACMVDILGRSGQL 564
Query: 118 ERAIRVFKSMVIK 130
E+A+ K M ++
Sbjct: 565 EKALEFIKKMPVE 577
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 187/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFE-NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ D Y K GDM+SA +F + R+VVS+T +I+G+V + + VF + +
Sbjct: 248 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL--RRQGI 305
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ S++ +CA N+ L G Q+H +++ F+ + L+D+YGK G LE
Sbjct: 306 EPNEFTFSSLIKACA---NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEH 362
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+ F + WN+++S + K+A+ F+ M ++G++ N ITF+++LT C+
Sbjct: 363 AIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSH 422
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL+ F+SM + VVP EHY CV+DLLGRAG L EAKEF+ MPFEP+A
Sbjct: 423 AGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 482
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ LGAC+IHG ++ +L++L+PK+ G V+LSNI+A +W +R M +
Sbjct: 483 SFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGN 542
Query: 300 IRKIPAYSLIE 310
++K+P YS ++
Sbjct: 543 VKKLPGYSWVD 553
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 15/254 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
+++ Y K G++D A+ LF+ M +R++VSWT++I+G +N F EAI F M G V
Sbjct: 46 LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-- 103
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + + S + +CA L G + +GKQ+H L+ I +F+G+ L D+Y K G +
Sbjct: 104 --PTQFAFSSAIRACASL---GSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMF 158
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF+ M KD +W AMI + +EAL+ F +M ++ + ++ + L AC
Sbjct: 159 DACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ + G + HS + K + + D+ +AG + A S F D+
Sbjct: 219 ALKACKFGRSV-HSSVVKLGFESDIFVGNALTDMYSKAGDMESA-----SNVFGIDSECR 272
Query: 239 GALLGACKIHGAVD 252
+ C I G V+
Sbjct: 273 NVVSYTCLIDGYVE 286
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 1/166 (0%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L GKQ+H ++ F+ L+++Y K G L+ A+++F +M +++ +W AMIS
Sbjct: 21 LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
L+ NS+ EA+ F M+ G + F + + ACA +E+G ++ H + KF +
Sbjct: 81 LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM-HCLALKFGIGS 139
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ + D+ + G + +A + MP + + S + G KI
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G +D A +F M ++D VSW +++ + + G E + +FK M V
Sbjct: 392 MLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWV- 450
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + + VLS+CA + L G Q+H +++ + F+G AL+ +Y K G +E A
Sbjct: 451 -NRSAFACVLSTCADIA---ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +DV +WN MI+ A + KEAL +FD M++ + ++IT V VL AC+ +
Sbjct: 507 HSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHS 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G+ F+SM F V EHY C++DLLGRAG L EA M+ MPFEPD+++ GA
Sbjct: 567 GLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGA 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA +IH +L ++ EL+P++ G YV+LSNI+A +W +R M E G+
Sbjct: 627 LLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGV 686
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 687 KKVPGFSWIE 696
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + GDM A LF+ RDV +WT+I++G+ +NG EA VF M
Sbjct: 299 MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM-------- 350
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
P++ VS + A V + K++ + RN V ++ Y + G L+
Sbjct: 351 PDK-NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRN-----VASWNTMLTGYAQAGMLDE 404
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M KD +W AM+++ + +E L +F EM G N F VL+ CA
Sbjct: 405 ARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCAD 464
Query: 180 AQLVELGLELFHSMLGK 196
+E G++L HS L K
Sbjct: 465 IAALECGMQL-HSRLIK 480
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 36/280 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +G + A F+ ++D VSW ++ +VRNG EA +F +
Sbjct: 206 MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR-------- 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +S + AG V + +++ + + ++V ++ Y + G + A
Sbjct: 258 -TEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV----SWNTMVSGYARRGDMAEA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F I+DV TW A++S A N +EA +FD M +K N +++ A++ A +
Sbjct: 313 RRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQR 368
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++E ELF +M + + + ++ +AG+L EA+ MP + DA A
Sbjct: 369 RMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIFGMMP-QKDAVSWAA 422
Query: 241 LLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLS 276
+L A G + L E+GR CG +V S
Sbjct: 423 MLAAYSQIGFSEETLQLFKEMGR---------CGEWVNRS 453
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 196/316 (62%), Gaps = 14/316 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K+G+M+ A LF+ + K+DVV+W ++I G+V + EA+ +F M +G
Sbjct: 216 MITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQ--- 272
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV---LSVFMGTALIDLYGKVG 115
RP++ T +S+LS+ A L G L +GK++H I ++ LSV + ALID+Y K G
Sbjct: 273 -RPDDVTMLSILSASADL---GDLEIGKKIHRSIF--DMCCGDLSVLLSNALIDMYAKCG 326
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+ A+ VF+ M KD +WN++I LA + +E++ +F EM ++ NEITFVAVL
Sbjct: 327 SIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLV 386
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC+ A V G F+ M F++ P ++HYGC+VD+LGRAGLL EA +F+ +M EP+A
Sbjct: 387 ACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNA 446
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ LLGAC++HG V+L +LL+++ G YV+LSNI+A W+ +RK M
Sbjct: 447 IIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLM 506
Query: 296 VEAGIRKIPAYSLIEA 311
+ G++K +SLI++
Sbjct: 507 DDGGVKKKVGHSLIDS 522
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 83/358 (23%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ V +G MD A LF + + D+ W ++I G + A+ ++ M VR
Sbjct: 53 FVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRG--VR 110
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI-------DL--- 110
P++ T+ VL +C L + LG +HG +L++ + F+ LI DL
Sbjct: 111 PDKFTFSFVLKACTKL---SWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATA 167
Query: 111 ---------------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR-- 147
Y + G L+ A ++F M +KD+ +WN MI++ A +
Sbjct: 168 RALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEME 227
Query: 148 -----------------------------EKEALVMFDEMKEKGLRANEITFVAVLTACA 178
KEAL MFD M++ G R +++T +++L+A A
Sbjct: 228 KARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASA 287
Query: 179 RAQLVELGLELFHSML----GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+E+G ++ S+ G V+ ++D+ + G + A E + M + D
Sbjct: 288 DLGDLEIGKKIHRSIFDMCCGDLSVLL----SNALIDMYAKCGSIGNALEVFQGMR-KKD 342
Query: 235 ASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVL-SNIHAGLERWNR 287
S +++G +HG +++L E+ R L+++P VL + HAG R R
Sbjct: 343 TSSWNSIIGGLALHGHAEESINLFQEMLR--LKMKPNEITFVAVLVACSHAGKVREGR 398
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 50/255 (19%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKV--GCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+H +++ N + + + LI + V G ++ A ++F + D+ WN MI A
Sbjct: 30 KQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSA 89
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-------------- 189
+ A+ ++ +M+ +G+R ++ TF VL AC + V+LG +
Sbjct: 90 QTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTF 149
Query: 190 -------FHSMLG-------------KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
FH+ G K EVVP + + R G L A++ M
Sbjct: 150 VRNTLIYFHANCGDLATARALFDASAKREVVP----WSALTAGYARRGKLDVARQLFDEM 205
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG--LERWNR 287
P + D ++ A HG + E R+L + PK V + + AG L R N+
Sbjct: 206 PMK-DLVSWNVMITAYAKHGEM----EKARKLFDEVPKK--DVVTWNAMIAGYVLSRLNK 258
Query: 288 -ATDLRKAMVEAGIR 301
A ++ AM + G R
Sbjct: 259 EALEMFDAMRDLGQR 273
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY K GDM+SA LF M +++ VSW+++I+G+ RN EA+ F MM +
Sbjct: 267 IVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG--IN 324
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+ S L +CA + L GKQVHGY++R + + ++LID+Y K G LE +
Sbjct: 325 PEQYTFSSCLCACASI---AALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS 381
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF M K DV WN MIS+LA N ++A+ MF++M E GL+ + ITF+ +L+AC+
Sbjct: 382 CCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSH 441
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ GL F +M V P EHY C++DLLGRAG E + +M +PD V
Sbjct: 442 SGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWS 501
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C+IH ++L +V R++EL+P+ YV L++++A L +W +R+ M E
Sbjct: 502 ALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKF 561
Query: 300 IRKIPAYSLIE 310
IRK S I+
Sbjct: 562 IRKERGISWID 572
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 18/205 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM----MGNV 56
M+ GY K GD+++A LF+ M+++DVVSW +I+ + + GCF EAI ++++ MG
Sbjct: 135 MLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF- 193
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N ++ VL C L L L KQVHG +L + ++ + ++++D Y K G
Sbjct: 194 -----NAFSFAGVLILCVKLKE---LQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGE 245
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A +F M++KD+ W ++S A A +F +M EK N +++ A+++
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEK----NPVSWSALISG 301
Query: 177 CARAQLVELGLELFHSMLGKFEVVP 201
AR L L+ F M+ KF + P
Sbjct: 302 YARNSLGHEALDYFTKMM-KFGINP 325
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 200/311 (64%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K+G + A +F+ M ++ VV+W S+I+G+ +NG EA+ +F +M ++ V+
Sbjct: 159 LVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELF-FLMQDLG-VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +T+VS+LS+CA + G + LG VH YI RN L+V +GTAL+++Y + G + +A
Sbjct: 217 PDSSTFVSLLSACAQV---GAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKA 273
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF SM K++ W AMIS + +A+ +F+EM G R N +TFVAVL+ACA A
Sbjct: 274 REVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHA 333
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR-SMPFEPDASVLG 239
LV+ G ++F +M ++ +VP +EH C+VD+LGRAG L+EA +F++ + P EP +V
Sbjct: 334 GLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWT 393
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A+LGACK+H DL EV LL ++P++ G YV+LSNI+A R +R +R M+
Sbjct: 394 AMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNR 453
Query: 300 IRKIPAYSLIE 310
++K YS I+
Sbjct: 454 LKKEVGYSTID 464
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 135/273 (49%), Gaps = 18/273 (6%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF ++ K D + S+I + E++ ++ M+ + + + T+ +V+ S A L
Sbjct: 74 LFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRML--LANISSSNYTFSAVIKSSADL 131
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+G+ +H ++ L ++ AL+ Y K G + A +VF M K V WN
Sbjct: 132 T---AFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWN 188
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+MIS N KEA+ +F M++ G++ + TFV++L+ACA+ + LG + H + +
Sbjct: 189 SMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWV-HEYIAR 247
Query: 197 --FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----A 250
F++ ++ ++++ R G +S+A+E SM E + A++ +HG A
Sbjct: 248 NCFDLNVVLG--TALMNMYSRCGNVSKAREVFDSME-EKNIVAWTAMISGYGMHGHGSQA 304
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSN-IHAGL 282
++L +E+ +P + VLS HAGL
Sbjct: 305 IELFNEMS--FDGPRPNNVTFVAVLSACAHAGL 335
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + D+DSA +F+ +++ VV + ++I G+ R EA+ +F+ M G ++
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK--YLK 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLSSCA L G L LGK +H Y ++ V + TALID++ K G L+ A
Sbjct: 228 PNEITLLSVLSSCALL---GSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M KD W+AMI + A++ + +++++MF+ M+ + ++ +EITF+ +L AC+
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G + F M+ KF +VP ++HYG +VDLL RAG L +A EF+ +P P +
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRI 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC H +DL +V R+ EL H G YV+LSN++A ++W LRK M +
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 465 VKVPGCSSIE 474
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 7/244 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
M A LFE M + D+V + S+ G+ R E +F ++ + L P+ T+ S
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGIL--PDNYTFPS 134
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +CA L G+Q+H ++ + +V++ LI++Y + ++ A VF +V
Sbjct: 135 LLKACAV---AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV 191
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
V +NAMI+ A +R EAL +F EM+ K L+ NEIT ++VL++CA ++LG +
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-K 250
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
H K ++ ++D+ + G L +A M ++ D A++ A H
Sbjct: 251 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANH 309
Query: 249 GAVD 252
G +
Sbjct: 310 GKAE 313
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M+ A +F+ M+++DVV W+++I G+ NG EA+ VF M VR
Sbjct: 244 LVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEM--QRENVR 301
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V V S+C+ L G L LG G + +E + + +GTALID Y K G + +A
Sbjct: 302 PDCYAMVGVFSACSRL---GALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQA 358
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M KD +NA+IS LA A +F +M + G++ + TFV +L C A
Sbjct: 359 KEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHA 418
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F M F V P +EHYGC+VDL RAGLL EA++ +RSMP E ++ V GA
Sbjct: 419 GLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGA 478
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C++H L V ++L+EL+P + G YV+LSNI++ RW+ A +R ++ + G+
Sbjct: 479 LLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGM 538
Query: 301 RKIPAYSLIE 310
+K+P S +E
Sbjct: 539 QKLPGCSWVE 548
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 144/250 (57%), Gaps = 13/250 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPN 62
Y KNG + A +F+ + +++VVSWT+II G++ +GCFGEA+ +F+ + MG +RP+
Sbjct: 147 YSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMG----LRPD 202
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
T V +L +C+ + G L G+ + GY+ + V +VF+ T+L+D+Y K G +E A R
Sbjct: 203 SFTLVRILYACSRV---GDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARR 259
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
VF MV KDV W+A+I ASN KEAL +F EM+ + +R + V V +AC+R
Sbjct: 260 VFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGA 319
Query: 183 VELGLELFHSMLG-KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
+ELG M G +F P++ ++D + G +++AKE + M D V A+
Sbjct: 320 LELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAV 376
Query: 242 LGACKIHGAV 251
+ + G V
Sbjct: 377 ISGLAMCGHV 386
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 10/250 (4%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++F ++ + ++I G V N F +A+ V+ +M + P+ T+ VL +C
Sbjct: 54 ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASM--RQHGFAPDNFTFPFVLKAC 111
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L + ++G +H +++ VF+ T L+ LY K G L A +VF + K+V
Sbjct: 112 TRLPHY--FHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVV 169
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+W A+I + EAL +F + E GLR + T V +L AC+R + G + M
Sbjct: 170 SWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYM 229
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG---- 249
V + +VD+ + G + EA+ M E D AL+ +G
Sbjct: 230 RESGSVGNVFVATS-LVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASNGMPKE 287
Query: 250 AVDLCHEVGR 259
A+D+ E+ R
Sbjct: 288 ALDVFFEMQR 297
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 192/306 (62%), Gaps = 11/306 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ + +RDVVSW +I+G+VR G A+ +F+ M MG
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE--- 241
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI--LRNEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L +G+++H + + + V +G ALID+Y K G
Sbjct: 242 -KPDIVTMLSLLSACA---DSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A VF SM KDV TWN+++ LA + E++ MF++M + +R +EITFVAVL A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F+ M K+ V P ++HYGC+VD+LGRAGLL EA EF+ +M EP++
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSV 417
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LL AC++HG ++L R+LL+ + G YV+LSNI+A + W + +RK M
Sbjct: 418 IWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477
Query: 297 EAGIRK 302
++G+ K
Sbjct: 478 DSGVNK 483
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 18/274 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL--VRPNEATY 66
G + A L+F+ + + D + ++I G +A+ ++ M+ VRP++ T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL +C + G G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 86 PFVLRACTAM---GAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDG 142
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+D W+AMI+ A A +FDE K L +++ ++TA A+ + L
Sbjct: 143 RAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDL----VSWNVMITAYAKRGDMALA 198
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLG 243
ELF + + +VV + ++ R G A E M+ M +PD + +LL
Sbjct: 199 RELF-DQVPERDVVS----WNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLS 253
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277
AC G +D+ + L ++ ++ G VVL N
Sbjct: 254 ACADSGDLDVGQRLHSSLSDMFSRN-GFPVVLGN 286
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK + A LF+ + ++D+VSWTS+I+G V+ C E++ +F M+G+
Sbjct: 323 LMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSG--FE 380
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L G+ VH YI + I V +GT+LID+Y K GC+E A
Sbjct: 381 PDGVILTSVLSACASL---GLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMA 437
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + K++ TWNA I LA N +EAL F + E G R NEITF+AV +AC +
Sbjct: 438 QQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHS 497
Query: 181 QLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G F M + + P +EHYGC+VDLL RA L+ EA E + MP PD ++G
Sbjct: 498 GLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIG 557
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL A +G V+L E+ + + + + G YV+LSN +A ++W +R+ M E G
Sbjct: 558 ALLSASSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKG 617
Query: 300 IRKIPAYSLI 309
I K P SLI
Sbjct: 618 ISKAPGSSLI 627
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 20/246 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD A +F+ M RDVVSWT +I+G+++ G F +A+ +F M V PN AT+VS
Sbjct: 233 GDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMD-----VAPNAATFVS 287
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +C L G L LGK +HG + + + + L+D+Y K + A R+F +
Sbjct: 288 ILGACGKL---GCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIP 344
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KD+ +W +MIS L +E+L +F EM G + + +VL+ACA L++ G
Sbjct: 345 EKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRW 404
Query: 189 LF----HSMLGKFEVVPIMEHYGC-VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ HS + K++V H G ++D+ + G + A++ +P + A +G
Sbjct: 405 VHEYIDHSRI-KWDV-----HIGTSLIDMYAKCGCIEMAQQMFNLLP-SKNIRTWNAYIG 457
Query: 244 ACKIHG 249
I+G
Sbjct: 458 GLAING 463
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 48/272 (17%)
Query: 20 NMLKRDVVSWTS-----IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
N LK+ S++S II+G+ AI +++ ++GN + P+ T +VL SCA
Sbjct: 138 NFLKQFDWSFSSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFV--PDVYTVPAVLKSCA 195
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
G+ KQ+H ++ ++ +F+ + + +Y G A +VF M ++DV +
Sbjct: 196 RF---SGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVS 252
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
W +IS +A+ +F M + N TFV++L AC + + LG + H ++
Sbjct: 253 WTGLISGYMKAGLFNDAVALFLRMD---VAPNAATFVSILGACGKLGCLNLGKGI-HGLV 308
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP------------------------ 230
K+ + ++D+ + +++AK +P
Sbjct: 309 SKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESL 368
Query: 231 ----------FEPDASVLGALLGACKIHGAVD 252
FEPD +L ++L AC G +D
Sbjct: 369 DLFYEMLGSGFEPDGVILTSVLSACASLGLLD 400
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++G++K D+++A +F+ M R+ VSWT++I G+V+ + +F+ M
Sbjct: 426 LLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAE-GKDW 484
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T V+VLS CA + G LG VHGY+ + + L V + AL+D+Y K G L A
Sbjct: 485 PTVITIVAVLSGCADI---GAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLA 541
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F+ M +DV +W MIS LA + + AL F +M + G NE+T ++VL+AC+ A
Sbjct: 542 LKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHA 601
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G LF M+ + P ++HYGC+VDLLGRAGLL EAKE + MP +PD+ + +
Sbjct: 602 GLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRS 661
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +HG + L G+ ++EL+P G Y++L NI+ RW A RKAM + +
Sbjct: 662 LLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRV 721
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 722 KKKPGCSWVE 731
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G A +F ++ D+VSWT +I+ ++ +A +F ++ + +R
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSG--LR 351
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +S+C + L G+ VHG + R E+ +G ALID+Y + G +E A
Sbjct: 352 PDSFCVVGAVSACG---HRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVA 408
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK+M IKDV +W ++++ + + A +FDEM + N +++ A++T +
Sbjct: 409 CSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMR----NSVSWTAMITGYVQG 464
Query: 181 QLVELGLELFHSM 193
++ GLELF M
Sbjct: 465 EVPIPGLELFQEM 477
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y D ++ +F+N+ RD + W S++ G +NG EA+ +F+ M+ VR
Sbjct: 211 LIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG--VR 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S++ C L + L GKQ+H Y++ +VF+ ++LID+Y K G + A
Sbjct: 269 PVPVTFSSLIPVCGNLAS---LRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIA 325
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M DV +W AMI A + +EALV+F+ M+ + N ITF+AVLTAC+ A
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHA 385
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F SM + +VP +EH+ + D LGRAG L EA F+ M +P ASV
Sbjct: 386 GLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWST 445
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H L EV ++++EL+P+ G +VVLSN+++ RWN A LR++M + G+
Sbjct: 446 LLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGM 505
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 506 KKDPACSWIE 515
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 12/270 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M++RDVVSW +++ G G EA+ + M RP+ T +VL A
Sbjct: 126 VFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREG--FRPDSFTLSTVLPIFAEC 183
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ + G +VHG+ RN VF+G++LID+Y + +++VF ++ ++D WN
Sbjct: 184 AD---VKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWN 240
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLG 195
++++ A N +EAL +F M + G+R +TF +++ C + G +L + + G
Sbjct: 241 SLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG 300
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
FE + ++D+ + G +S A M PD A++ +HG
Sbjct: 301 GFEDNVFIS--SSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALHGPAREAL 357
Query: 256 EVGRR--LLELQPKHCGRYVVLSNI-HAGL 282
+ R L +P H VL+ HAGL
Sbjct: 358 VLFERMELGNAKPNHITFLAVLTACSHAGL 387
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 24/254 (9%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W I G F +A+ +F M + A+ + L SCA L G LG +
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAAL---GLSALGASL 72
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGC-------------------LERAIRVFKSMVI 129
H +R+ F AL++LY KV C E +VF M+
Sbjct: 73 HALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIE 132
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV +WN ++ A R EAL +M +G R + T VL A V+ GLE+
Sbjct: 133 RDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEV 192
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
H + + ++D+ + + ++P D + +LL C +G
Sbjct: 193 -HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNG 250
Query: 250 AVDLCHEVGRRLLE 263
+V+ + RR+L+
Sbjct: 251 SVEEALGIFRRMLQ 264
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+M+ A +F+ + +DVV+W ++I G+ +NG EAI +F +M +RP++
Sbjct: 231 YEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSM--REAGLRPDKI 288
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VLSSCA + G L LG ++ GY L + +V++GTAL+D+Y K G LE+A VF
Sbjct: 289 TLVGVLSSCAAV---GALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVF 345
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
M K+ +WNA+I LA N R +A+ F+ M+ EKGL+ ++ITF+ VL+AC A L+
Sbjct: 346 GKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLL 405
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E G LF S+ F+++P +EHY C+VDLL RAG L A +F+ MP + DA +LGALL
Sbjct: 406 EYGRRLFSSLTPVFKIIPKIEHYSCIVDLLARAGHLEAAWDFIEKMPGKVDAVMLGALLA 465
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ ++ +V R+++L+P + YVV S I+A ++ + + + M E G+ K
Sbjct: 466 ACRKCKNAEVGEKVINRIMKLEPTNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKT 525
Query: 304 PAYSLIE 310
P S +E
Sbjct: 526 PGCSWVE 532
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 141/315 (44%), Gaps = 45/315 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD +A +F+ + RDVVSW SI+ + R C
Sbjct: 156 LITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKAYERAAC------------------- 196
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ G L LGK V ++ + + +G+AL+ +Y K G +E A
Sbjct: 197 ----------------RDAGNLVLGKWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMEEA 240
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KDV WNAMI+ A N EA+ +F M+E GLR ++IT V VL++CA
Sbjct: 241 RRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAV 300
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ELG+EL L G + V + +VD+ + G L +A MPF+ +AS
Sbjct: 301 GALELGVELDGYALHRGLYSNVYVGT---ALVDMYAKCGDLEKATYVFGKMPFKNEAS-W 356
Query: 239 GALLGACKIHG-AVDLCH--EVGRRLLELQPKHCGRYVVLSN-IHAGLERWNRATDLRKA 294
AL+ +G D E+ R LQP VLS +HAGL + R
Sbjct: 357 NALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRLFSSLT 416
Query: 295 MVEAGIRKIPAYSLI 309
V I KI YS I
Sbjct: 417 PVFKIIPKIEHYSCI 431
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 195/314 (62%), Gaps = 11/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ + +RDVVSW +I+G+VR G A+ +F+ M MG
Sbjct: 215 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE--- 271
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI--LRNEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L +G+++H + + + V +G ALID+Y K G
Sbjct: 272 -KPDIVTMLSLLSACA---DSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 327
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A VF SM KDV TWN+++ LA + E++ MF++M + +R +EITFVAVL A
Sbjct: 328 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 387
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F+ M K+ V P ++HYGC+VD+LGRAGLL EA EF+ +M EP++
Sbjct: 388 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSV 447
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LL AC++HG ++L R+LL+ + G YV+LSNI+A + W + +RK M
Sbjct: 448 IWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 507
Query: 297 EAGIRKIPAYSLIE 310
++G+ K + ++
Sbjct: 508 DSGVNKEAGQTFVD 521
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 18/274 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL--VRPNEATY 66
G + A L+F+ + + D + ++I G +A+ ++ M+ VRP++ T+
Sbjct: 56 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 115
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL +C + G G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 116 PFVLRACTAM---GAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDG 172
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+D W+AMI+ A A +FDE K L +++ ++TA A+ + L
Sbjct: 173 RAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDL----VSWNVMITAYAKRGDMALA 228
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLG 243
ELF + + +VV + ++ R G A E M+ M +PD + +LL
Sbjct: 229 RELFDQVPER-DVVS----WNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLS 283
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277
AC G +D+ + L ++ ++ G VVL N
Sbjct: 284 ACADSGDLDVGQRLHSSLSDMFSRN-GFPVVLGN 316
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 185/307 (60%), Gaps = 8/307 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ GD +A +F +RD+VSW S+I+ +++N G+A+ +F +M+ + PN
Sbjct: 510 YINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISEL---EPNSV 566
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIR 122
T +++L+SC L + L LG+ +H Y R E+ L + + A I +Y + G L+ A +
Sbjct: 567 TIINILTSCTQLAH---LPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEK 623
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F ++ + + +WNAMI+ + R ++A + F +M + G + N ++F +VL+AC+ + L
Sbjct: 624 IFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGL 683
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
GL+LFHSM+ F + P + HYGC+VDLLGR G SEA F+ SMP EPDAS+ ALL
Sbjct: 684 TVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALL 743
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
+C+I L + +L+EL+P + G +++LSNI+A W+ +RK + E G+ K
Sbjct: 744 SSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGK 803
Query: 303 IPAYSLI 309
P S I
Sbjct: 804 PPGTSWI 810
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 137/245 (55%), Gaps = 9/245 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F M +RD+VSW ++I+G+V C+ EA+ +F M +
Sbjct: 101 LVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG--LT 158
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
PN T V++L +C ++ L LG+++HGY LRN + + ++GTAL+ Y + +
Sbjct: 159 PNSRTVVALLLACGEMLE---LRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-L 214
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ RVF M+++++ +WNA+I+ + +AL ++ M +G++ + +T + V+ ACA
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAE 274
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LG++L H + KF ++ + ++++ G L + ++P DA++
Sbjct: 275 YGCLRLGMQL-HQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWN 332
Query: 240 ALLGA 244
+++ +
Sbjct: 333 SMISS 337
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YVK+ + +A +FE M DV+SW ++I+ F ++ +A +F +M + ++
Sbjct: 405 LLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELF--LMMCESEIK 462
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T VS+L+ C + L G+ +HG+ ++N + ++ + T+L ++Y G A
Sbjct: 463 FNSYTIVSLLAFCK---DGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAA 519
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +D+ +WN++ISS N +AL++F+ M + L N +T + +LT+C +
Sbjct: 520 TNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQL 578
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LG + H+ + EV M+ + + R G L A++ ++ S
Sbjct: 579 AHLPLG-QCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-W 636
Query: 239 GALLGACKIHG 249
A++ +HG
Sbjct: 637 NAMITGYGMHG 647
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y NG ++S+ LF + D W S+I+ ++ G EAI +F M + ++
Sbjct: 303 LLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKM--RLERIK 360
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +LS C L N+G ++ G+ +H + +++ I L ++G AL+ +Y K + A
Sbjct: 361 EDVRTIAIMLSLCNDL-NDGSIW-GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAA 418
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
VF+ M DV +WN MIS+ A + +A +F M E ++ N T V++L C
Sbjct: 419 QYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+ AT VL +C L G G ++H +I +++ V +GTAL+D Y K G +
Sbjct: 56 ITPDSATMPLVLKACGRLNAIGN---GVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVA 112
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF M +D+ +WNA+IS KEA+++F EMK+ GL N T VA+L AC
Sbjct: 113 EASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172
Query: 179 RAQLVELGLEL 189
+ LG E+
Sbjct: 173 EMLELRLGQEI 183
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ML R++VSW +II GF+ G +A+ ++ +M+ + ++ + T + V+ +CA
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSML--IEGIKFDAVTMLVVIQACA-- 273
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L LG Q+H ++ ++ +F+ AL+++Y G LE + +F ++ D WN
Sbjct: 274 -EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWN 332
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+MISS EA+ +F +M+ + ++ + T +L+ C
Sbjct: 333 SMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
WN++I + L + +M+ G+ + T VL AC R + G+ + HS +
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRI-HSFI 86
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+++ + +VD + GL++EA + MP E D AL+
Sbjct: 87 RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMP-ERDLVSWNALI 133
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 185/307 (60%), Gaps = 8/307 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ GD +A +F +RD+VSW S+I+ +++N G+A+ +F +M+ + PN
Sbjct: 510 YINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISEL---EPNSV 566
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIR 122
T +++L+SC L + L LG+ +H Y R E+ L + + A I +Y + G L+ A +
Sbjct: 567 TIINILTSCTQLAH---LPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEK 623
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F ++ + + +WNAMI+ + R ++A + F +M + G + N ++F +VL+AC+ + L
Sbjct: 624 IFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGL 683
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
GL+LFHSM+ F + P + HYGC+VDLLGR G SEA F+ SMP EPDAS+ ALL
Sbjct: 684 TVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALL 743
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
+C+I L + +L+EL+P + G +++LSNI+A W+ +RK + E G+ K
Sbjct: 744 SSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGK 803
Query: 303 IPAYSLI 309
P S I
Sbjct: 804 PPGTSWI 810
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 137/245 (55%), Gaps = 9/245 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F M +RD+VSW ++I+G+V C+ EA+ +F M +
Sbjct: 101 LVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG--LT 158
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
PN T V++L +C ++ L LG+++HGY LRN + + ++GTAL+ Y + +
Sbjct: 159 PNSRTVVALLLACGEMLE---LRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-L 214
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ RVF M+++++ +WNA+I+ + +AL ++ M +G++ + +T + V+ ACA
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAE 274
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LG++L H + KF ++ + ++++ G L + ++P DA++
Sbjct: 275 YGCLRLGMQL-HQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWN 332
Query: 240 ALLGA 244
+++ +
Sbjct: 333 SMISS 337
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YVK+ + +A +FE M DV+SW ++I+ F ++ +A +F +M + ++
Sbjct: 405 LLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELF--LMMCESEIK 462
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T VS+L+ C + L G+ +HG+ ++N + ++ + T+L ++Y G A
Sbjct: 463 FNSYTIVSLLAFCK---DGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAA 519
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +D+ +WN++ISS N +AL++F+ M + L N +T + +LT+C +
Sbjct: 520 TNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQL 578
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LG + H+ + EV M+ + + R G L A++ ++ S
Sbjct: 579 AHLPLG-QCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-W 636
Query: 239 GALLGACKIHG 249
A++ +HG
Sbjct: 637 NAMITGYGMHG 647
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y NG ++S+ LF + D W S+I+ ++ G EAI +F M + ++
Sbjct: 303 LLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKM--RLERIK 360
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +LS C L N+G ++ G+ +H + +++ I L ++G AL+ +Y K + A
Sbjct: 361 EDVRTIAIMLSLCNDL-NDGSIW-GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAA 418
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
VF+ M DV +WN MIS+ A + +A +F M E ++ N T V++L C
Sbjct: 419 QYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ML R++VSW +II GF+ G +A+ ++ +M+ + ++ + T + V+ +CA
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSML--IEGIKFDAVTMLVVIQACA-- 273
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L LG Q+H ++ ++ +F+ AL+++Y G LE + +F ++ D WN
Sbjct: 274 -EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWN 332
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+MISS EA+ +F +M+ + ++ + T +L+ C
Sbjct: 333 SMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+ AT VL +C L G G ++H I +++ V +GTAL+D Y K G +
Sbjct: 56 ITPDSATMPLVLKACGRLNAIGN---GVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVA 112
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF M +D+ +WNA+IS KEA+++F EMK+ GL N T VA+L AC
Sbjct: 113 EASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172
Query: 179 RAQLVELGLEL 189
+ LG E+
Sbjct: 173 EMLELRLGQEI 183
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
WN++I + L + +M+ G+ + T VL AC R + G+ + HS +
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRI-HSCI 86
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+++ + +VD + GL++EA + MP E D AL+
Sbjct: 87 RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMP-ERDLVSWNALI 133
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +D A F M + D + W S+I+ F +NG A+ +F+ M +
Sbjct: 489 ITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMG-----MS 543
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ VS+ S+ + N LY GK++HGY++RN F+ +ALID+Y K G L A
Sbjct: 544 GAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALA 603
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K+ +WN++I++ ++ +E L +F EM G+ + +TF+ +++AC A
Sbjct: 604 RCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHA 663
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G+ FH M ++ + MEHY C+VDL GRAG L EA + ++SMPF PDA V G
Sbjct: 664 GLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGT 723
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG V+L R LLEL PK+ G YV+LSN+HA W +R+ M E G+
Sbjct: 724 LLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGV 783
Query: 301 RKIPAYSLIE 310
+KIP YS I+
Sbjct: 784 QKIPGYSWID 793
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 11/258 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A LF M + D V+W +I G+V+NG EA +F M+ V+P+
Sbjct: 291 YSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG--VKPDSV 348
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S L S ++ G L K+VH YI+R+ + V++ +ALID+Y K G +E A ++F
Sbjct: 349 TFASFLPS---ILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIF 405
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + DV AMIS + +A+ F + ++G+ N +T +VL ACA ++
Sbjct: 406 QQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALK 465
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG EL +L K ++ I+ + D+ + G L A EF R M E D+ +++ +
Sbjct: 466 LGKELHCDILKK-QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISS 523
Query: 245 CKIHG----AVDLCHEVG 258
+G AVDL ++G
Sbjct: 524 FSQNGKPEMAVDLFRQMG 541
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 120/249 (48%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y NG + A +F+ + +RD + W +++G+V++G F A+ F M + ++V
Sbjct: 186 LIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMV- 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY +LS CA G LG QVHG ++ + + L+ +Y K G L A
Sbjct: 245 -NSVTYTCILSICA---TRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F +M D TWN +I+ N EA +F+ M G++ + +TF + L + +
Sbjct: 301 RKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILES 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ E+ HS + + V + ++D+ + G + A++ + D +V A
Sbjct: 361 GSLRHCKEV-HSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLV-DVAVCTA 418
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 419 MISGYVLHG 427
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 142/285 (49%), Gaps = 10/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD++ A +F+ DV T++I+G+V +G +AI F+ ++ +
Sbjct: 388 LIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV-- 445
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVL +CA L LGK++H IL+ ++ V +G+A+ D+Y K G L+ A
Sbjct: 446 PNSLTMASVLPACAALAAL---KLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLA 502
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M D WN+MISS + N + + A+ +F +M G + + ++ + L++ A
Sbjct: 503 YEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANL 562
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H + + ++D+ + G L+ A+ M + + S +
Sbjct: 563 PALYYGKEM-HGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVS-WNS 620
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
++ A HG C ++ +L + P H V++S HAGL
Sbjct: 621 IIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGL 665
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 9/249 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YV G + LF + + + W +I G G F A+ + M+G+ V P++
Sbjct: 89 YVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSN--VSPDKY 146
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V+ +C GL N + L VH + +F+G+ALI LY G + A RVF
Sbjct: 147 TFPYVIKACGGLNN---VPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVF 203
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ +D WN M+ + A+ F M+ N +T+ +L+ CA
Sbjct: 204 DELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFC 263
Query: 185 LGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
LG ++ ++G FE P + + +V + + G L +A++ +MP + D L+
Sbjct: 264 LGTQVHGLVIGSGFEFDPQVAN--TLVAMYSKCGNLFDARKLFNTMP-QTDTVTWNGLIA 320
Query: 244 ACKIHGAVD 252
+G D
Sbjct: 321 GYVQNGFTD 329
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 180/306 (58%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + ++D A LF+ ++ V +W ++I+G+ ++G AI +F+ MM PN
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMM--TTEFTPNPV 407
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+LS+CA L G L GK VH I + ++++ TALID+Y K G + A ++F
Sbjct: 408 TITSILSACAQL---GALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF 464
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K+ TWN MI + EAL +F+EM G + + +TF++VL AC+ A LV
Sbjct: 465 DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVR 524
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+FH+M+ K+ + P+ EHY C+VD+LGRAG L +A EF+R MP EP +V G LLGA
Sbjct: 525 EGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGA 584
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH +L RL EL P + G YV+LSNI++ + +A +R+A+ + + K P
Sbjct: 585 CMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTP 644
Query: 305 AYSLIE 310
+LIE
Sbjct: 645 GCTLIE 650
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 10/287 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + K D+D+A LLF + K D+VS+ ++I+GF NG A+ F+ ++ V+ R
Sbjct: 245 LISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELL--VSGQR 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +T V ++ + G L+L + G+ +++ +L + TAL +Y ++ ++ A
Sbjct: 303 VSSSTMVGLIPVSSPF---GHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K V WNAMIS A + + A+ +F EM N +T ++L+ACA+
Sbjct: 360 RQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQL 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G + H ++ + + ++D+ + G +SEA + + E +
Sbjct: 420 GALSFGKSV-HQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF-DLTSEKNTVTWNT 477
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVL-SNIHAGLER 284
++ +HG D ++ +L L QP VL + HAGL R
Sbjct: 478 MIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVR 524
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF ++ K D+ + +I GF + +I + +++ N L P+ TY +S+
Sbjct: 62 LFFSVPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTL-SPDNFTYAFAISASPDD 119
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
LG +H + + + ++F+ +AL+DLY K + A +VF M +D WN
Sbjct: 120 ------NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWN 173
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
MI+ L N +++ +F +M +G+R + T VL A A Q V++G+
Sbjct: 174 TMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGM 224
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M RD V W ++I G VRN C+ +++ VFK+M+ VR
Sbjct: 144 LVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQG--VR 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +VL + A + + +G + L+ ++ T LI ++ K ++ A
Sbjct: 202 LDSTTVATVLPAVAEMQE---VKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
+F + D+ ++NA+IS + N + A+ F E+ G R + T V ++
Sbjct: 259 RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLI 312
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 8/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y+ GD +A LFE RD++SW ++I +V+N +A+ +F M+
Sbjct: 499 LADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA---E 555
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
PN T ++VLSS L L G+ +H Y+ R + L + + A I +Y + G L+
Sbjct: 556 PNSVTIINVLSSFTHLAT---LPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQ 612
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +FK++ +++ +WNAMI+ N R +A++ F +M E G R N +TFV+VL+AC+
Sbjct: 613 SAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACS 672
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +E+GL+LFHSM+ F V P + HY C+VDLL R G + EA+EF+ SMP EPDASV
Sbjct: 673 HSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVW 732
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
ALL +C+ + + +L +L+P + G YV+LSN++A W +R + E
Sbjct: 733 RALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEK 792
Query: 299 GIRKIPAYSLI 309
G+RK P S I
Sbjct: 793 GLRKPPGISWI 803
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 140/282 (49%), Gaps = 13/282 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y NG ++S+ LFE++ RD W S+I+ + GC EA+ +F M V+
Sbjct: 296 LLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEG--VK 353
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T V +LS C L + GL GK +H +++++ + + +G AL+ +Y ++ C+E
Sbjct: 354 KDERTVVIMLSMCEELAS--GLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESV 411
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M D+ +WN MI +LA N+ +A +F+ M+E ++ N T +++L AC
Sbjct: 412 QKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDV 471
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G + H + K + + D+ G + A++ P + D A
Sbjct: 472 TCLDFGRSI-HGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCP-DRDLISWNA 529
Query: 241 LLGAC----KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278
++ + + H A+ L H R + E +P VLS+
Sbjct: 530 MIASYVKNNQAHKALLLFH---RMISEAEPNSVTIINVLSSF 568
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 136/261 (52%), Gaps = 21/261 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F+ M RDVV W +++ G+V GC+ EA+ + + MG NL R
Sbjct: 94 VVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVRE-MGRENL-R 151
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
PN T V++L +C G L LG+ VHGY LRN + S + TALI Y L
Sbjct: 152 PNSRTMVALLLACEG---ASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY-----LRF 203
Query: 120 AIRV----FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
+RV F MV++++ +WNAMIS +AL +F +M ++ + +T + +
Sbjct: 204 DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQ 263
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
ACA ++LG ++ H + KFE V + ++++ G L + + S+P DA
Sbjct: 264 ACAELGSLKLGKQI-HQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP-NRDA 321
Query: 236 SVLGALLGACKIHGAVDLCHE 256
+ +++ A G CHE
Sbjct: 322 PLWNSMISAYAAFG----CHE 338
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
G+ DM LLF+ M+ R++VSW ++I+G+ G + +A+ +F M+ V+ V+ +
Sbjct: 198 GFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML--VDEVKFDC 255
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T + + +CA L G L LGKQ+H ++ E V +++ AL+++Y G LE + ++
Sbjct: 256 VTMLVAVQACAEL---GSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 312
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
F+S+ +D WN+MIS+ A+ +EA+ +F M+ +G++ +E T V +L+ C
Sbjct: 313 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 24 RDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81
+D W S+I ++N +AI M ++ V PN T VL +CA +
Sbjct: 16 KDPKHWNSVIKHQANLKND---QAILSAYTQMESLG-VLPNNTTLPLVLKACAA---QNA 68
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
+ GK +H I +++ V +GTA++D Y K G +E A VF +M +DV WNAM+
Sbjct: 69 VERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYG 128
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+EA+++ EM + LR N T VA+L AC A + LG
Sbjct: 129 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLG 173
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+R + IKD WN++I A+ ++ L + +M+ G+ N T VL A
Sbjct: 3 LQRLTLSPTKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKA 62
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
CA VE G + S+ G +++ + VVD + G + +A+
Sbjct: 63 CAAQNAVERGKSIHRSIQGT-DLMDDVRVGTAVVDFYCKCGFVEDAR 108
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G K G++D + LF+ M R+ VSW S+I+G+VRNG EA+ +F M ++
Sbjct: 197 MIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQM--QEERIK 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VS+L++ A L G L G+ +H YI +N L+V + ++ID+Y K G + A
Sbjct: 255 PSEFTMVSLLNASARL---GALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEA 311
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ +K + +WN MI LA N E EA+ +F ++ LR +++TFV VLTAC +
Sbjct: 312 FQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYS 371
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ E F M +++ P ++HY C+VD LGRAGLL EA+E +R+MP PDA + +
Sbjct: 372 GLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSS 431
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V+L + +++L YV+LSNI+A +++ A + R +M E I
Sbjct: 432 LLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQI 491
Query: 301 RKIPAYSLIE 310
K P SLIE
Sbjct: 492 EKEPGCSLIE 501
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 44/275 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD++ A L+F + ++ SW +II GF ++ AI +F +M+ V+ V+P+ TY S
Sbjct: 72 GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDML-IVSSVQPHRLTYPS 130
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V + A L G + G Q+HG +++ + F+ +I +Y G L + F +
Sbjct: 131 VFKAYAQL---GLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERM 187
Query: 129 IKDVCTWNAMISSLAS-------------------------------NSREKEALVMFDE 157
D+ WN+MI LA N R +EAL +F +
Sbjct: 188 DFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQ 247
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGR 215
M+E+ ++ +E T V++L A AR ++ G E H + K FE+ I+ ++D+ +
Sbjct: 248 MQEERIKPSEFTMVSLLNASARLGALKQG-EWIHDYIRKNNFELNVIVT--ASIIDMYCK 304
Query: 216 AGLLSEAKEFMRSMPFEPDAS----VLGALLGACK 246
G + EA + P + +S +LG + C+
Sbjct: 305 CGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCE 339
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A +F+ + +RDVVS T+II+G+ + G EA+ +F+ + ++
Sbjct: 200 LLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREG--MQ 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY SVL++ +GL L GKQVH ++LR+E+ V + +LID+Y K G L A
Sbjct: 258 SNYVTYTSVLTALSGL---AALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
R+F ++ + V +WNAM+ + + +E L +F+ M E ++ + +T +AVL+ C+
Sbjct: 315 RRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSH 374
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
L + G+++F+ M GK V P +HYGCVVD+LGRAG + A EF++ MPFEP A++
Sbjct: 375 GGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIW 434
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G LLGAC +H +D+ VG +LL+++P++ G YV+LSN++A RW LR M++
Sbjct: 435 GCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKK 494
Query: 299 GIRKIPAYSLIE 310
+ K P S IE
Sbjct: 495 AVTKEPGRSWIE 506
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 159/311 (51%), Gaps = 27/311 (8%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YVK + A +F+ M +R+VVSWT++I+ + + G +A+ +F M+ + PNE
Sbjct: 103 YVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG--TEPNEF 160
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL+SC G G LG+Q+H +I++ V++G++L+D+Y K G + A +F
Sbjct: 161 TFATVLTSCIG---SSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIF 217
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +DV + A+IS A ++EAL +F ++ +G+++N +T+ +VLTA + ++
Sbjct: 218 QCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALD 277
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G ++ H+ L + EV + ++D+ + G L+ A+ ++ S L+G
Sbjct: 278 HGKQV-HNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGY 336
Query: 245 CKIHGAVDLCHEVGRRLLEL----------QPKHCGRYVVLSNI-HAGLERWNRATDLRK 293
K H GR +LEL +P VLS H GLE ++ D+
Sbjct: 337 SK--------HGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLE--DKGMDIFY 386
Query: 294 AMVEAGIRKIP 304
M I P
Sbjct: 387 DMTSGKISVQP 397
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 11/251 (4%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N Y +VL+ C + + + G++VH ++++ + V++ T LI Y K L A
Sbjct: 57 NFQDYNTVLNEC---LRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDAR 113
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M ++V +W AMIS+ + +AL +F +M G NE TF VLT+C +
Sbjct: 114 HVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSS 173
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
LG ++ HS + K + ++D+ + G + EA+ + +P E D A+
Sbjct: 174 GFVLGRQI-HSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP-ERDVVSCTAI 231
Query: 242 LGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ G + E+ RRL +Q + VL+ + +GL + + ++ +
Sbjct: 232 ISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTAL-SGLAALDHGKQVHNHLLRS- 289
Query: 300 IRKIPAYSLIE 310
++P+Y +++
Sbjct: 290 --EVPSYVVLQ 298
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ ++ + +F ++ +RD +SW S++ G+V+NG + EA+ +F+ M+ VR
Sbjct: 247 LVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAK--VR 304
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SV+ +CA L L+LGKQ+HGY+LR ++F+ +AL+D+Y K G ++ A
Sbjct: 305 PGAVAFSSVIPACAHLAT---LHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAA 361
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + D +W A+I A + EA+ +F+EMK +G++ N++ FVAVLTAC+
Sbjct: 362 RKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 421
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ F+SM + + +EHY V DLLGRAG L EA +F+ M EP SV
Sbjct: 422 GLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWST 481
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C +H ++L +V ++ + ++ G YV++ N++A RW LR + + G+
Sbjct: 482 LLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGL 541
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 542 RKKPACSWIE 551
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 155/300 (51%), Gaps = 16/300 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K +DS +FE M ++DVVS+ ++I G+ ++G + +A+ + + M G +L +
Sbjct: 146 LMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREM-GTSDL-K 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SVL + V+ + GK++HGY++R I V++G++L+D+Y K +E +
Sbjct: 204 PDAFTLSSVLPIFSEYVD---VLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS 260
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + +D +WN++++ N R EAL +F +M +R + F +V+ ACA
Sbjct: 261 ERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHL 320
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LG +L +L G F + +VD+ + G + A++ M + S
Sbjct: 321 ATLHLGKQLHGYVLRGGFGRNIFIA--SALVDMYSKCGNIQAARKIFDRMNLHDEVSWTA 378
Query: 240 ALLG-ACKIHG--AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--ERWNRATDLRK 293
++G A HG AV L E+ R+ ++P VL+ H GL E W + K
Sbjct: 379 IIMGHALHGHGHEAVSLFEEMKRQ--GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 436
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+ A+L+F+ + V++W S+I F F A+ F M + P+ + SVL
Sbjct: 55 LHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRC--PDHNVFPSVL 112
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC +++ L G+ VHG+I+R + ++ G AL+++Y K+ ++ +VF+ M K
Sbjct: 113 KSCTMMMD---LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRK 169
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
DV ++N +I+ A + ++AL M EM L+ + T +VL
Sbjct: 170 DVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 34/191 (17%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
KQ+H +R + LS + +I +Y + L A+ VFK++ V W ++I
Sbjct: 24 AKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTD 82
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACA-----------RAQLVELGLE----- 188
S AL F EM+ G + F +VL +C +V LG++
Sbjct: 83 QSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142
Query: 189 ------LFHSMLG------KFEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSM---PF 231
++ +LG FE++P + Y V+ ++G+ +A +R M
Sbjct: 143 GNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDL 202
Query: 232 EPDASVLGALL 242
+PDA L ++L
Sbjct: 203 KPDAFTLSSVL 213
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 193/309 (62%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +NG++ A +F+ M ++D +W+++I + R G +A+ +F+ M +R
Sbjct: 352 MILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG--IR 409
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +SVLS CAGL N L G+++H ++R++ L V++ + L+ +Y K G L +A
Sbjct: 410 PNFPSLISVLSVCAGLAN---LDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +KDV WN++I+ A + EAL +F +M G+ +++TFV VL+AC+
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GLE+F+SM K++V +EHY C+VDLLGRAG L+EA + + MP E DA + GA
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ H +DL ++LL L+PK+ G +++LSNI+A RW+ +LR+ M + +
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646
Query: 301 RKIPAYSLI 309
K P S I
Sbjct: 647 SKYPGCSWI 655
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 127/285 (44%), Gaps = 48/285 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A +LF+ M +R+VVSWT++I G+V+N A +F+ M
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM------PE 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G N G L ++ + + SV A+I +G+ G + +A
Sbjct: 313 KNEVSWTAMLK---GYTNCGRLDEASELFNAM----PIKSVVACNAMILCFGQNGEVPKA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA-- 178
+VF M KD TW+AMI E +AL +F M+ +G+R N + ++VL+ CA
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425
Query: 179 ---------RAQLV--ELGLELF------------------HSMLGKFEVVPIMEHYGCV 209
AQLV + L+++ + +F V ++ + +
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVV-MWNSI 484
Query: 210 VDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAV 251
+ + GL EA M F PD +L AC G V
Sbjct: 485 ITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNV 529
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 27/251 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY+ NG ++ A +F+ M +R+VVSWT+++ G+V+ G EA +F M
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-------- 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS GL+ EG + ++ + ++V T +I Y +VG L A
Sbjct: 218 -PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGRLVEA 272
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V +W MI+ N + A +F+ M EK NE+++ A+L
Sbjct: 273 RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNC 328
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL--GRAGLLSEAKEFMRSMPFEPDASVL 238
++ ELF++M PI C +L G+ G + +A++ M E D
Sbjct: 329 GRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTW 380
Query: 239 GALLGACKIHG 249
A++ + G
Sbjct: 381 SAMIKVYERKG 391
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY +N A +F+ M +R+ +SW +++G++ NG EA VF M
Sbjct: 135 IVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM-------- 186
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + G V EG + + + + +N + +V +G L + G ++
Sbjct: 187 -PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQE-----GRIDE 240
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A R+F M KDV T MI R EA ++FDEM R N +++ ++T +
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP----RRNVVSWTTMITGYVQ 296
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
Q V++ +LF M K EV + ++ G L EA E +MP +
Sbjct: 297 NQQVDIARKLFEVMPEKNEV-----SWTAMLKGYTNCGRLDEASELFNAMPIK 344
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 18/206 (8%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
+LI Y ++G +E+A VF M K++ +WN++++ N R +EA MFD+M E+
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
N I++ +++ ++ E+F M + V + +V + G++SEA+
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRMPERNVV-----SWTAMVRGYVKEGMISEAET 212
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVD-LCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283
MP E + +LG G +D C RL ++ P+ V +N+ G
Sbjct: 213 LFWQMP-EKNVVSWTVMLGGLLQEGRIDEAC-----RLFDMMPEK--DVVTRTNMIGGYC 264
Query: 284 RWNRATDLRKAMVEAGIRKIPAYSLI 309
+ R + R E R + +++ +
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTM 290
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y + GD+ SA LF+ M +RD VSW S+I G+ +NG +AI +F+ M+ + + +
Sbjct: 271 MISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRK 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV S+C L G L LG + N I +S+ + +LI++Y + G ++ A
Sbjct: 331 PDEVTMVSVFSACGHL---GELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +D+ ++N +IS A + E++ + +MKE G+ + IT++A+LTAC+ A
Sbjct: 388 VLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHA 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G LF S+ KF P ++HY C++D+LGRAG L EA + ++SMP EP A + G+
Sbjct: 448 GLLDEGQRLFESI--KF---PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGS 502
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A IH V+L +L +++P + G Y +LSNI+A RW +R M + G+
Sbjct: 503 LLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGV 562
Query: 301 RKIPAYSLIE 310
+K S +E
Sbjct: 563 KKTTGLSWLE 572
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 48/262 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K G++ +A + F+ M +R VVSW ++++G+ + G E I +F +M+ N V+
Sbjct: 134 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGN-VQ 192
Query: 61 PNEATYVSVLSSCAGLVN-------------------------------------EGGLY 83
P+E T+ +V+SSC+ L + E
Sbjct: 193 PDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHK 252
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ +Q+ Y R+ + + A+I Y +VG L A +F M +D +WN+MI+
Sbjct: 253 IFEQLGVYKYRSSVPWN-----AMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYT 307
Query: 144 SNSREKEALVMFDEM--KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
N +A+ +F+EM E + +E+T V+V +AC L ELGL + + K +
Sbjct: 308 QNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC--GHLGELGLGNWAVSILKVNHIQ 365
Query: 202 I-MEHYGCVVDLLGRAGLLSEA 222
I + Y ++++ R G + +A
Sbjct: 366 ISISVYNSLINMYSRCGSMQDA 387
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 27/237 (11%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A LF+ M R V W +I+G+ + G EA +F ++MG+ + R N
Sbjct: 72 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLF-HVMGDQEISR-NVI 129
Query: 65 TYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
T+ ++++ A G + +Y K SV A++ Y + G E IR
Sbjct: 130 TWTTMITGHAKKGNLKTARMYFDKMPE---------RSVVSWNAMLSGYAQGGAPEETIR 180
Query: 123 VFKSM-----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTA 176
+F M V D TW +ISS +S + + ++ +K G R N A+L
Sbjct: 181 LFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDM 240
Query: 177 CARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
A+ +E ++F LG ++ VP + ++ R G L AK MP
Sbjct: 241 HAKCGNLEAAHKIF-EQLGVYKYRSSVP----WNAMISAYARVGDLPSAKHLFDKMP 292
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 18/220 (8%)
Query: 46 ICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105
+ +FK+M+ + + ++PN A++ SV+ AG +E L+L ++L++ ++
Sbjct: 16 VSLFKHMLQHCD-IKPN-ASFYSVMMKSAG--SESMLFLA-----HVLKSGYDRDHYVRN 66
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
++ +Y K G +E A ++F M + V WN MIS E+EA +F M ++ +
Sbjct: 67 GILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISR 126
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
N IT+ ++T A+ ++ F M + V + ++ + G E
Sbjct: 127 NVITWTTMITGHAKKGNLKTARMYFDKMPERSVVS-----WNAMLSGYAQGGAPEETIRL 181
Query: 226 MRSM----PFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
M +PD + ++ +C G L + R+L
Sbjct: 182 FNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKL 221
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 183/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YV + +D A +F M +DV +WT ++ GF + AI F M+G NL +
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNL-K 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + +LSSC+ + G L G++VH ++ ++F+G+A+ID+Y G LE A
Sbjct: 323 LDSIALMGILSSCS---HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDA 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F M KDV WNAMI+ N +A+ +F +MK GL +E TFV+VL AC+ A
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHA 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GL++F+ M+ V+P ++HY CV+D+LGRAG L A F+ +MPF+PD V
Sbjct: 440 GMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYST 499
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG + L HE+ +++ E++P G YV+LSN++A W R ++ +
Sbjct: 500 LLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRM 559
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 560 KKDPGFSSIE 569
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 43/289 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+++ YV G + A +F + ++VVSWT +I+G +N CF EAI VF+ M MGN
Sbjct: 62 LMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNF--- 118
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PN T SVL + A L G + + K VH + +R +VF+ TAL+D+Y K GC+
Sbjct: 119 KPNAVTISSVLPAFANL---GLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGV 175
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+SM ++V TWNA++S + + +EA+ +F+ M+ KGL + T ++++ A
Sbjct: 176 ARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLS 235
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+++G + +G ++ R G +E D +
Sbjct: 236 VGCLQVGTGI----------------HGFII----RTG-------------YENDKHIKT 262
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288
AL+ H VD H V E+ K + ++ + W+RA
Sbjct: 263 ALMDIYVSHNCVDDAHRV---FSEMSVKDVAAWTLMLTGFSSGRHWDRA 308
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 133/258 (51%), Gaps = 12/258 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A LFE+M +R+VV+W +I++G+ +G EAI +F N+M L+
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF-NLMRRKGLL- 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++S ++ G L +G +HG+I+R + TAL+D+Y C++ A
Sbjct: 221 ---VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
RVF M +KDV W M++ +S A+ F++M + L+ + I + +L++C+
Sbjct: 278 HRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSH 337
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ ++ G + H++ K + V+D+ G L +AK F M E D
Sbjct: 338 SGALQQGRRV-HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWN 395
Query: 240 ALLGACKIHG----AVDL 253
A++ ++G A+DL
Sbjct: 396 AMIAGNGMNGYGTDAIDL 413
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+Q+H I+ + + + F+ +L++ Y G L A ++F K+V +W +IS LA N
Sbjct: 41 QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN 100
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIME 204
EA+ +F EM + N +T +VL A A L+ + + + G FE +E
Sbjct: 101 DCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVE 160
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRR 260
+VD+ + G + A++ SM E + A++ HG A+DL + + R+
Sbjct: 161 --TALVDMYSKFGCMGVARQLFESMS-ERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRK 217
Query: 261 LLELQPKHCGRYVVLSNIHAGLE 283
L + Y ++S I A L
Sbjct: 218 GLLVD-----FYTIMSLIPASLS 235
>gi|212722054|ref|NP_001132129.1| uncharacterized protein LOC100193546 [Zea mays]
gi|194693506|gb|ACF80837.1| unknown [Zea mays]
gi|413926460|gb|AFW66392.1| hypothetical protein ZEAMMB73_680096 [Zea mays]
Length = 473
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 196/312 (62%), Gaps = 4/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y+K G + +A +FE M +DVV+WTS+++G+V + + +A+ VF M G +LV
Sbjct: 158 LLNAYLKCGSVATACRVFEEMPVKDVVAWTSMVSGYVDSRMYLKAVEVFNEMRGADDLVW 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEAT VS+ ++CAGL G L K +H Y+ + + + + AL+D+YGK GC+E A
Sbjct: 218 PNEATVVSLATACAGL---GSLEHAKGLHSYVEKAGLEDELIVRNALVDMYGKCGCIESA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M KD+ +W MIS L+S+ R +EA+ +F M E+G+ + TF+ VL+AC+ A
Sbjct: 275 HRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFSMCEEGVLPDSTTFIVVLSACSHA 334
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ +F+SM + V +HYGC+VDL RAGL+ A EF+ MPFEP+ +LGA
Sbjct: 335 GLVDEGIHIFNSMESEHNVPRDTKHYGCMVDLFSRAGLVRRAYEFISMMPFEPNLEILGA 394
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM-VEAG 299
LL AC I+ +++ V ++ + G V+LSNI+A W+ +R+ + EA
Sbjct: 395 LLSACSINNELEIGELVLNKIDMVCSYKGGAGVLLSNIYANQNLWHEVDTIRRKIRTEAI 454
Query: 300 IRKIPAYSLIEA 311
+RK P +SLI A
Sbjct: 455 VRKPPGHSLIAA 466
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
G L + +HG R VF TAL++ Y K G + A RVF+ M +KDV W +M+S
Sbjct: 132 GFTLCQSLHGQGFRLGYNCHVFTQTALLNAYLKCGSVATACRVFEEMPVKDVVAWTSMVS 191
Query: 141 SLASNSREKEALVMFDEMK--EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
+ +A+ +F+EM+ + + NE T V++ TACA +E L HS + K
Sbjct: 192 GYVDSRMYLKAVEVFNEMRGADDLVWPNEATVVSLATACAGLGSLEHAKGL-HSYVEKAG 250
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
+ + +VD+ G+ G + A
Sbjct: 251 LEDELIVRNALVDMYGKCGCIESAHRLF 278
>gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970
gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana]
gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 17/319 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-----EAICVFKNMMGNVNLV 59
Y KNGD+ A +F+ M +R V+W ++I G+ + G +A+ +F+ + V
Sbjct: 157 YAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGV 216
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV--LSVFMGTALIDLYGKVGCL 117
RP + T V VLS+ + G L +G VHGYI + + VF+GTAL+D+Y K GCL
Sbjct: 217 RPTDTTMVCVLSAIS---QTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCL 273
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A VF+ M +K+V TW +M + LA N R E + + M E G++ NEITF ++L+A
Sbjct: 274 NNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAY 333
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LVE G+ELF SM +F V P++EHYGC+VDLLG+AG + EA +F+ +MP +PDA +
Sbjct: 334 RHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAIL 393
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPK-------HCGRYVVLSNIHAGLERWNRATD 290
L +L AC I+G + E+G+ LLE++ + C YV LSN+ A +W
Sbjct: 394 LRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEK 453
Query: 291 LRKAMVEAGIRKIPAYSLI 309
LRK M E I+ P YS +
Sbjct: 454 LRKEMKERRIKTRPGYSFV 472
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVF 102
++I +F N +L+ NE T+V VL +CA + L +G+ VHG + + + S
Sbjct: 89 DSIRIFANYASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYESEL 148
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS-----NSREKEALVMFDE 157
+GT L+ Y K G L A +VF M + TWNAMI S N ++A+V+F
Sbjct: 149 IGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRR 208
Query: 158 MK--EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLL 213
G+R + T V VL+A ++ L+E+G L H + K P ++ + +VD+
Sbjct: 209 FSCCGSGVRPTDTTMVCVLSAISQTGLLEIG-SLVHGYIEKLGFTPEVDVFIGTALVDMY 267
Query: 214 GRAGLLSEA 222
+ G L+ A
Sbjct: 268 SKCGCLNNA 276
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +++A +FE M ++V +WTS+ G NG E + M + ++
Sbjct: 263 LVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESG--IK 320
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PNE T+ S+LS+ GLV E G+ L K + R + + ++DL GK G ++
Sbjct: 321 PNEITFTSLLSAYRHIGLVEE-GIELFKSMK---TRFGVTPVIEHYGCIVDLLGKAGRIQ 376
Query: 119 RAIRVFKSMVIK 130
A + +M IK
Sbjct: 377 EAYQFILAMPIK 388
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 185/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++G++K D+++A +F+ M R+ VSWT++I G+V+ + +F+ M
Sbjct: 175 LLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAE-GKDW 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T V+VLS CA + G LG VHGY+ + + L V + AL+D+Y K G L A
Sbjct: 234 PTVITIVAVLSGCADI---GAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F+ M +DV +W MIS LA + + AL F +M + G+ NE+T ++VL+AC+ A
Sbjct: 291 LKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHA 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G LF M+ + P ++HYGC+VDLLGRAGLL EAKE + MP +PD+ + +
Sbjct: 351 GLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRS 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +HG + L G+ ++EL+P G Y++L NI+ RW A RKAM + +
Sbjct: 411 LLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRV 470
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 471 KKKPGCSWVE 480
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G A +F ++ D+VSWT +I+ ++ +A +F ++ + +R
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSG--LR 100
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +S+C + L G+ VHG + R E+ +G ALID+Y + G +E A
Sbjct: 101 PDSFCVVGAVSACG---HRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK+M IKDV +W ++++ + + A +FDEM + N +++ A++T +
Sbjct: 158 CSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMR----NSVSWTAMITGYVQG 213
Query: 181 QLVELGLELFHSM 193
++ GLELF M
Sbjct: 214 EVPIPGLELFQEM 226
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 192/306 (62%), Gaps = 11/306 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ + +RDVVSW +I+G+VR G A+ +F+ M MG
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE--- 241
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI--LRNEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L +G+++H + + + V +G ALID+Y K G
Sbjct: 242 -KPDIVTMLSLLSACA---DSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A VF SM KDV TWN+++ LA + E++ MF++M + +R +EITFVAVL A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F+ M K+ V P ++HYGC+VD+LGRAGLL EA EF+ +M EP++
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSV 417
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LL AC++HG ++L R+LL+ + G YV+LSNI+A + W + +RK M
Sbjct: 418 IWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477
Query: 297 EAGIRK 302
++G+ K
Sbjct: 478 DSGVNK 483
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 21/258 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL--VRPNEATY 66
G + A L+F+ + + D + ++I G +A+ ++ M+ VRP++ T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL +C + G G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 86 PFVLRACTAM---GAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDG 142
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+D W+AMI+ A A +FDE K L +++ ++TA A+ + L
Sbjct: 143 RAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDL----VSWNVMITAYAKRGDMALA 198
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLG 243
ELF + + +VV + ++ R G A E M+ M +PD + +LL
Sbjct: 199 RELF-DQVPERDVVS----WNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLS 253
Query: 244 ACKIHGAVDLCHEVGRRL 261
AC G +D VG+RL
Sbjct: 254 ACADSGDLD----VGQRL 267
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 190/314 (60%), Gaps = 14/314 (4%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
K G ++ A LF+ M +R+ V+W+++++ +V G F +A+ +F++M+ + VRPN A
Sbjct: 167 AKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSG--VRPNRAA 224
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNE------IVLSVFMGTALIDLYGKVGCLER 119
V VL++C L G L G+ VH ++ + + TAL+D+Y K G L+
Sbjct: 225 VVGVLAACGAL---GALDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMYAKCGSLDT 281
Query: 120 AIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A +VF + + DV + AMIS L+ + R EA+ +F +M+ +G+R NE+TF+ VLTA
Sbjct: 282 ARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEVTFICVLTA 341
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C RA LV E+F SM + P +EHYGC+VD+LGRAGLL+EA E +RSM PDA
Sbjct: 342 CGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRSMTMRPDAY 401
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALL AC HG V+ +V R L EL H G +V LSN++AG +W +R+ M
Sbjct: 402 VLGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWSKWEEVLKVRRTMD 461
Query: 297 EAGIRKIPAYSLIE 310
+ + K+P S++E
Sbjct: 462 QRKVAKVPGCSMLE 475
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157
++ LI Y G + A R+F+ + DVC+W +++++ A + +EA +FD
Sbjct: 122 AYVANGLIHAYATHGVVPSARRLFEDALASRAADVCSWTSLLTACAKAGQVEEARALFDG 181
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
M R N++ + A+L+A A + + LF ML
Sbjct: 182 MP----RRNDVAWSAMLSAYVAAGSFDDAVRLFEDML 214
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+L+ K G +E A +F M ++ W+AM+S+ + +A+ +F++M G+R
Sbjct: 160 TSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGVR 219
Query: 165 ANEITFVAVLTAC 177
N V VL AC
Sbjct: 220 PNRAAVVGVLAAC 232
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 193/309 (62%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI + +NG++ A +F+ M ++D +W+++I + R G +A+ +F+ M +R
Sbjct: 352 MILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG--IR 409
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +SVLS CAGL N L G+++H ++R++ L V++ + L+ +Y K G L +A
Sbjct: 410 PNFPSLISVLSVCAGLAN---LDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKA 466
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +KDV WN++I+ A + EAL +F +M G+ +++TFV VL+AC+
Sbjct: 467 KQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYT 526
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GLE+F+SM K++V +EHY C+VDLLGRAG L+EA + + MP E DA + GA
Sbjct: 527 GNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ H +DL ++LL L+PK+ G +++LSNI+A RW+ +LR+ M + +
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646
Query: 301 RKIPAYSLI 309
K P S I
Sbjct: 647 SKYPGCSWI 655
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 127/285 (44%), Gaps = 48/285 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A +LF+ M +R+VVSWT++I G+V+N A +F+ M
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM------PE 312
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G N G L ++ + + SV A+I +G+ G + +A
Sbjct: 313 KNEVSWTAMLK---GYTNCGRLDEASELFNAM----PIKSVVACNAMILCFGQNGEVPKA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA-- 178
+VF M KD TW+AMI E +AL +F M+ +G+R N + ++VL+ CA
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425
Query: 179 ---------RAQLV--ELGLELF------------------HSMLGKFEVVPIMEHYGCV 209
AQLV + L+++ + +F V ++ + +
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVV-MWNSI 484
Query: 210 VDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAV 251
+ + GL EA M F PD +L AC G V
Sbjct: 485 ITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNV 529
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 27/251 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY+ NG ++ A +F+ M +R+VVSWT+++ G+V+ G EA +F M
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM-------- 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS GL+ EG + ++ + ++V T +I Y +VG L A
Sbjct: 218 -PEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGRLVEA 272
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V +W MI+ N + A +F+ M EK NE+++ A+L
Sbjct: 273 RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNC 328
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL--GRAGLLSEAKEFMRSMPFEPDASVL 238
++ ELF++M PI C +L G+ G + +A++ M E D
Sbjct: 329 GRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTW 380
Query: 239 GALLGACKIHG 249
A++ + G
Sbjct: 381 SAMIKVYERKG 391
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY +N A +F+ M +R+ +SW +++G++ NG EA VF M
Sbjct: 135 IVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM-------- 186
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + G V EG + + + + +N + +V +G L + G ++
Sbjct: 187 -PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQE-----GRIDE 240
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A R+F M KDV T MI R EA ++FDEM R N +++ ++T +
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP----RRNVVSWTTMITGYVQ 296
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
Q V++ +LF M K EV + ++ G L EA E +MP +
Sbjct: 297 NQQVDIARKLFEVMPEKNEV-----SWTAMLKGYTNCGRLDEASELFNAMPIK 344
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 18/206 (8%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
+LI Y ++G +E+A VF M K++ +WN++++ N R +EA MFD+M E+
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
N I++ +++ ++ E+F M + V + +V + G++SEA+
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRMPERNVV-----SWTAMVRGYVKEGMISEAET 212
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVD-LCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283
MP E + +LG G +D C RL ++ P+ V +N+ G
Sbjct: 213 LFWQMP-EKNVVSWTVMLGGLLQEGRIDEAC-----RLFDMMPEK--DVVTRTNMIGGYC 264
Query: 284 RWNRATDLRKAMVEAGIRKIPAYSLI 309
+ R + R E R + +++ +
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTM 290
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 181/310 (58%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y K M A L+F+ M R+ VSW S++ + +NG EA V+ +
Sbjct: 261 MVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVY--LGARRAGEE 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + S+L++CAGL+ GL LG+ +H R+ I ++F+ +AL+D+YGK G ++ A
Sbjct: 319 PTDFMVSSLLTTCAGLL---GLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR 179
+VF M +++ TWNAMI A AL +FDEM + N IT V VLTAC+R
Sbjct: 376 EQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACSR 435
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L + G ELF +M +F + P +EHY CVVDLLGRAG+ +A E ++ MP P SV G
Sbjct: 436 GGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWG 495
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG CK+HG +L +L EL P+ G +V+LSN+ A RW ATD+RK M G
Sbjct: 496 ALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVG 555
Query: 300 IRKIPAYSLI 309
I+K P S I
Sbjct: 556 IKKDPGRSWI 565
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 117/229 (51%), Gaps = 6/229 (2%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D Y K G + A LF+ M R+VV+W +++ V +G E + + + G + P
Sbjct: 161 LDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGM--P 218
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N + + ++CAG+ L LG+Q HG++ + V + +++D YGK C+ +A
Sbjct: 219 NVVSVCAFFNACAGMTC---LSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKAR 275
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M +++ +W +M+ + A N E+EA +++ + G + ++LT CA
Sbjct: 276 LVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLL 335
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++LG L H++ + + + +VD+ G+ G + +A++ MP
Sbjct: 336 GLDLGRAL-HAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMP 383
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 4/199 (2%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VVS+T+ I+G ++ +A+ F M+ + L RPN+ T+ S + A +G
Sbjct: 80 VVSYTAFISGAAQHARPLQALSAFAAML-RLGL-RPNDFTFPSAFKAAASAPPRCAAAVG 137
Query: 86 KQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
QVH LR + F+ A +D+Y K G L A R+F M ++V WNA++++
Sbjct: 138 PQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVL 197
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+ R E + + ++ G N ++ A ACA + LG E FH + K +
Sbjct: 198 DGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLG-EQFHGFVAKCGFDKDVS 256
Query: 205 HYGCVVDLLGRAGLLSEAK 223
+VD G+ + +A+
Sbjct: 257 VSNSMVDFYGKCRCMGKAR 275
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G MD A ++F+ M + D SW+++++G+ +NG EA+ +F+ M V
Sbjct: 148 LIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAEN--VS 205
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SV+ C L G L LGK VH Y+ + + + V +GTAL+ +Y K G L+ A
Sbjct: 206 SDAFTLASVVGVCGDL---GALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNA 262
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +DV W+ MI+ A + ++AL +FD MK N +TF +VL+AC+ +
Sbjct: 263 LKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHS 322
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F +M ++++ P ++HYGC+VDL RAG++ A +F+++MP EP+ +
Sbjct: 323 GLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRT 382
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG DL + R++L+L P YV++SN++A L RW+ +R M +
Sbjct: 383 LLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAP 442
Query: 301 RKIPAYSLIE 310
+K +S IE
Sbjct: 443 KKQHGWSSIE 452
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 9/243 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A +F ++ W +II G+ + AI ++++M + + PN T+
Sbjct: 54 SGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMF--LCGISPNSYTFG 111
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C L+ L G+++H I++ + + LI LY GC++ A +F M
Sbjct: 112 FVLKACCKLLR---LCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEM 168
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
D +W+ M+S A N + EAL +F EM+ + + ++ T +V+ C ++LG
Sbjct: 169 PEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG- 227
Query: 188 ELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ HS + K E V I G +V + + G L A + + M E D + ++
Sbjct: 228 KWVHSYMDK-EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYA 285
Query: 247 IHG 249
IHG
Sbjct: 286 IHG 288
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 37/204 (18%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKV--GCLERAIRVFKSMVIKDVCTWNAMISSLA 143
K + +++R + F+ + LI+ G + A R+F ++ WN +I +
Sbjct: 24 KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYS 83
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-----------AQLVELGLE---- 188
+ A+ ++ +M G+ N TF VL AC + +Q+V++GL+
Sbjct: 84 ISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETP 143
Query: 189 LFHSMLGKFEVVPIMEHYGCV----------------VDLLGRAGLLSEAKEFMRSMPFE 232
L + ++ + M+ Y CV V + G EA + R M E
Sbjct: 144 LVNGLIKLYAACGCMD-YACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAE 202
Query: 233 ---PDASVLGALLGACKIHGAVDL 253
DA L +++G C GA+DL
Sbjct: 203 NVSSDAFTLASVVGVCGDLGALDL 226
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +FE + +RDVVS T+II G+ + G EA+ +F + + +
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL--HSEGMS 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY S+L++ +GL L GKQ H ++LR E+ + +LID+Y K G L A
Sbjct: 252 PNYVTYASLLTALSGLAL---LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACAR 179
R+F +M + +WNAM+ + + +E L +F M+ EK ++ + +T +AVL+ C+
Sbjct: 309 RRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 368
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ + GL +F M+ G++ P EHYGC+VD+LGRAG + EA EF++ MP +P A VL
Sbjct: 369 GRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 428
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC++H +VD+ VGRRL+E++P++ G YV+LSN++A RW ++R M++
Sbjct: 429 GSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQK 488
Query: 299 GIRKIPAYSLIE 310
+ K P S I+
Sbjct: 489 AVTKEPGRSWIQ 500
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 144/261 (55%), Gaps = 16/261 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++ A + + M +++VVSWT++I+ + + G EA+ VF MM + +PNE
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG--KPNEF 154
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL+SC + GL LGKQ+HG I++ +F+G++L+D+Y K G ++ A +F
Sbjct: 155 TFATVLTSC---IRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +DV + A+I+ A ++EAL MF + +G+ N +T+ ++LTA + L++
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 185 LGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G + H + + ++++ ++D+ + G LS A+ +MP S L+G
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329
Query: 244 ACKIHGAVDLCHEVGRRLLEL 264
K H +GR +LEL
Sbjct: 330 YSK--------HGLGREVLEL 342
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++L++C +++ L G++VH ++++ + + ++ T L+ YGK CLE A +V
Sbjct: 55 YDALLNAC---LDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD 111
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M K+V +W AMIS + EAL +F EM + NE TF VLT+C RA + L
Sbjct: 112 EMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL 171
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ H ++ K+ + ++D+ +AG + EA+E +P
Sbjct: 172 GKQI-HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 194/310 (62%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GDM +A LF+ L++DVV+W+++I+G+V+NG +A+ VF M + V+
Sbjct: 262 MIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEM--ELMNVK 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCLER 119
P+E VS++S+ A L G L L + V Y+ + I L + AL+D+ K G +ER
Sbjct: 320 PDEFILVSLMSASAQL---GHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMER 376
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+++F +DV + +MI L+ + R +EA+ +F+ M +GL +E+ F +LTAC+R
Sbjct: 377 ALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSR 436
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G F SM K+ + P+ +HY C+VDLL R+G + +A E ++ +P+EP A G
Sbjct: 437 AGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWG 496
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK++G +L V RL EL+P + YV+LS+I+A ERW + +R M E
Sbjct: 497 ALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERR 556
Query: 300 IRKIPAYSLI 309
+RKIP S I
Sbjct: 557 VRKIPGSSKI 566
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 24/282 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ A +F+ M R+VVSWT+++ G+V G EA +F M
Sbjct: 169 LIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHR----- 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A++ S+L G V G L + V + +V T +ID Y K G + A
Sbjct: 224 -NVASWNSMLQ---GFVKMGDLSGARGVFDAMPEKNVV----SFTTMIDGYAKAGDMAAA 275
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV W+A+IS N +AL +F EM+ ++ +E V++++A A+
Sbjct: 276 RFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQL 335
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+EL + S + K + +H ++D+ + G + A + P D +
Sbjct: 336 GHLELA-QWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKP-RRDVVLYC 393
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLE-LQPKHCGRYVVLS 276
+++ IHG AV+L R L+E L P V+L+
Sbjct: 394 SMIQGLSIHGRGEEAVNL---FNRMLMEGLTPDEVAFTVILT 432
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 18/249 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F +L V W ++I + F + F M + L P+ TY SV+ +C+G
Sbjct: 84 VFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGAL--PDSFTYPSVIKACSGT 141
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
GK +HG R + +++GT+LID+YGK G + A +VF M ++V +W
Sbjct: 142 CKARE---GKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWT 198
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AM+ + EA +FDEM + N ++ ++L + + +F +M K
Sbjct: 199 AMLVGYVAVGDVVEARKLFDEMPHR----NVASWNSMLQGFVKMGDLSGARGVFDAMPEK 254
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
V + ++D +AG ++ A+ F+ E D AL+ +G L ++
Sbjct: 255 NVV-----SFTTMIDGYAKAGDMAAAR-FLFDCSLEKDVVAWSALISGYVQNG---LPNQ 305
Query: 257 VGRRLLELQ 265
R LE++
Sbjct: 306 ALRVFLEME 314
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K+ +D AI +F+ M ++DVVSW+S+I GF N EA+ F+ M+G+V +
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHV---K 496
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+++ LS+CA G L GK++H Y+LR I ++ AL+DLY K G A
Sbjct: 497 PNSVTFIAALSACAA---TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYA 553
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F KDV +WN M+S ++ AL +F++M E G +E+TFVA+L AC+RA
Sbjct: 554 WAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V G ELFH M KF +VP ++HY C+VDLL R G L+EA + MP +PDA+V GA
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V+L + +LEL+P +V+L +++ +W + +RK M E G+
Sbjct: 674 LLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 733
Query: 301 RKIPAYSLIE 310
+ S +E
Sbjct: 734 EQDNGCSWVE 743
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ V+ G++ A +F M +RDV SW ++ G+ + G EA+ ++ M+ +R
Sbjct: 137 MLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG--MR 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C G+ + +G++VH ++LR V + AL+ +Y K G + A
Sbjct: 195 PDVYTFPCVLRTCGGIPD---WRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + D +WNAMI+ N + L +F M E ++ N +T +V A
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSV--TVASG 309
Query: 181 QLVELGL 187
L E+G
Sbjct: 310 MLSEVGF 316
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K GD+ +A +F+ M D +SW ++I G N + +F M+ N V+
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE--VQ 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SV + +G+++E G K++HG+ ++ + V +LI +Y +G + A
Sbjct: 296 PNLMTITSV-TVASGMLSEVGF--AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDA 352
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KD +W AMIS N +AL ++ M+ + +++T + L ACA
Sbjct: 353 GKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACL 412
Query: 181 QLVELGLEL 189
+++G++L
Sbjct: 413 GRLDVGIKL 421
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+G A++ + + G + A RVF M +DV +WN M+ +EAL ++ M G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R + TF VL C +G E+ H+ + +F ++ +V + + G + A
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREV-HAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 223 KEFMRSM 229
++ M
Sbjct: 252 RKVFDGM 258
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +++ + +F K+ W +II+G + NG +AI +FK M+ + V
Sbjct: 366 LIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQML--MEAVD 423
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT S+L + A L + L + +HGY++R+ + + + T LID+Y K G LE A
Sbjct: 424 PNDATLNSLLPAYAFLTD---LQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESA 480
Query: 121 IRVFKSMVIKD--VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + KD + TW+A+I+ + + A+ +FD+M + G++ NEITF ++L AC+
Sbjct: 481 HNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ GL LF ML ++ +HY CV+DLLGRAG L EA E +R+M F P+ +V
Sbjct: 541 HAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVW 600
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLG+C IH V+L + L EL+P + G YV+L+NI++ + RW A +R M
Sbjct: 601 GALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNI 660
Query: 299 GIRKIPAYSLIE 310
G+RK PA+SLIE
Sbjct: 661 GLRKTPAHSLIE 672
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 7/250 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+MD A ++F M KRDVVSWT+++NG++ NG A+ + + M V+
Sbjct: 265 LLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM--QFESVK 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVLS+CA L + L G+ +HG+ +R ++ V + TALID+Y K + +
Sbjct: 323 PNFVTLASVLSACASLYS---LKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLS 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + WNA+IS N ++A+ +F +M + + N+ T ++L A A
Sbjct: 380 FRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-FEPDASVLG 239
++ + H L + + +E ++D+ + G L A +P + D
Sbjct: 440 TDLQQARNM-HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWS 498
Query: 240 ALLGACKIHG 249
A++ +HG
Sbjct: 499 AIIAGYGMHG 508
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ G+M+ A +F+ M +R +VSW ++ING+ +NGC EA+ VF M+G + P+ A
Sbjct: 168 YMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG--IEPDCA 225
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL C+ L L +G++VH + + + + +L+D+Y K G ++ A +F
Sbjct: 226 TVVSVLPVCSYLKE---LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF 282
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
M +DV +W M++ N + AL++ M+ + ++ N +T +VL+ACA
Sbjct: 283 YEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 106/214 (49%), Gaps = 7/214 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG- 75
LF+ + + SW ++I + +G +A+ +F M+ + P+ TY V+ +C
Sbjct: 78 LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLAS-GRRWPDNYTYPFVIKACGDY 136
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
L+ E +G +H + + F+ +L+ +Y G +E A RVF M + + +W
Sbjct: 137 LLPE----MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSW 192
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N MI+ N KEAL++FD M KG+ + T V+VL C+ + +E+G + H+++
Sbjct: 193 NTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVE 251
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + + ++D+ + G + EA+ M
Sbjct: 252 VKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEM 285
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF---MGTALIDLYGKVGCLERA 120
A Y S+L C + + KQ+H + + ++ S + + ++L Y GC A
Sbjct: 19 ARYQSLLQRC---TSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHA 75
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACAR 179
++F + + +WNAMI ++ +AL +F +M G R + T+ V+ AC
Sbjct: 76 RKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGD 135
Query: 180 AQLVELG 186
L E+G
Sbjct: 136 YLLPEMG 142
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 182/315 (57%), Gaps = 19/315 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNVN 57
+++ Y K G +D A LF+ M +R+V+SW+ +ING+V G + EA+ +F+ M N
Sbjct: 134 VVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEA 193
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VRPNE T +VLS+C L G L GK VH YI + + + + +GTALID+Y K G L
Sbjct: 194 FVRPNEFTMSTVLSACGRL---GALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 118 ERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLT 175
ERA RVF ++ KDV ++AMI LA E +F EM + N +TFV +L
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC L+ G F M+ +F + P ++HYGC+VDL GR+GL+ EA+ F+ SMP EPD
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G+LL ++ G + C +RL+EL P + G YV+LSN++A RW
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME-------- 422
Query: 296 VEAGIRKIPAYSLIE 310
GI K+P S +E
Sbjct: 423 ---GINKVPGCSYVE 434
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 45/275 (16%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGE---AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78
LK + W II V N + I V+ M + V P+ T+ +L S N
Sbjct: 20 LKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNH--RVSPDFHTFPFLLPS---FHN 74
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
L LG++ H IL + F+ T+L+++Y G L A RVF KD+ WN++
Sbjct: 75 PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSV 134
Query: 139 ISSLASNSREKEALVMFDEMKEKG------------------------------------ 162
+++ A +A +FDEM E+
Sbjct: 135 VNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAF 194
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R NE T VL+AC R +E G + H+ + K+ V + ++D+ + G L A
Sbjct: 195 VRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERA 253
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
K ++ + D A++ ++G D C ++
Sbjct: 254 KRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 195/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + D+ +A +F+ + +R + WT++I+G+ +N C EA+ +F M+ V +
Sbjct: 169 LVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEALELFDQMI--VEGLE 226
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN AT SVLS+CA G L LG+++H ++ I + V +GTAL+ +Y K G + A
Sbjct: 227 PNGATLASVLSACA---QSGCLDLGERIHVFMEEKGIEVGVILGTALVHMYAKNGAILMA 283
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + ++ TWNAMI LA + KEAL F +++++ + N+ITFV VL+AC A
Sbjct: 284 QKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDITFVGVLSACCHA 343
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ +G ++FH M + + P +EHYGC+VDLLGR G L EA+E ++ M ++ D +LGA
Sbjct: 344 GLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKGMAWKADVVILGA 403
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+CK HG +++ V + +L L+P + G YVVLSN++A RW LRK M +
Sbjct: 404 LLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNL 463
Query: 301 RKIPAYSLIEA 311
+K P +SL+++
Sbjct: 464 KKTPGWSLVDS 474
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 5/180 (2%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++GD+ A+ LF N + + W ++I + EA+ ++ +M ++++ P + T+
Sbjct: 74 ESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMR-RLDVI-PGKHTF 131
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
+L +C+ N L QVH ++L+ + L++ + L+ Y + A RVF
Sbjct: 132 PFLLKACS---NFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDE 188
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ + + W MIS A N EAL +FD+M +GL N T +VL+ACA++ ++LG
Sbjct: 189 VSERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLG 248
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY + +M+ A LF M R+VVSW ++ +VR + E + +F MMG
Sbjct: 293 MIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGET---M 349
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
PNEAT VSVL++CA L G L GK +H YI N ++ V + TAL+ +Y K G ++
Sbjct: 350 PNEATLVSVLTACAHL---GRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDL 406
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M + V +WN+MI + + +AL MF +M+++G N+ TF+ VL+ACA
Sbjct: 407 ARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAH 466
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ ++ G F M +++ P +EHYGC+VDLLGRAGL+ + +E +R MP E ++ G
Sbjct: 467 SGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWG 526
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC+ H +L V +RL+EL+P+ G Y++LSNI+A +W+ +RK M E G
Sbjct: 527 ALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERG 586
Query: 300 IRKIPAYSLIE 310
+ K +S +
Sbjct: 587 LTKTTGFSWVH 597
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 114/253 (45%), Gaps = 17/253 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +FE D+V+W S+I+G+V+NG G A +F+ M
Sbjct: 200 LIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEM-------- 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E S S AG V G + + + + +IV +ID Y +V +E A
Sbjct: 252 -PERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIV----SWNCMIDGYAQVQNMEIA 306
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V +WN M++ E L MFD+M + + NE T V+VLTACA
Sbjct: 307 CELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHL 365
Query: 181 QLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ G + HS + V+ P + ++ + + G + A++ M S
Sbjct: 366 GRLDRG-KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNS 424
Query: 240 ALLGACKIHGAVD 252
++G +HG D
Sbjct: 425 MIMGY-GMHGQAD 436
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 13/218 (5%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ LFE + + D +I+ +V A+ + M V PN T+ ++ C
Sbjct: 111 AVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVR-KCVAPNHYTFPLLVKVC 169
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
+ G + G+++H IL+ L +F+ +LI +Y G + A +F+ I D+
Sbjct: 170 WEI---GSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLV 226
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
TWN+MI N A +F+EM E+ L ++ +++ + +LF+ M
Sbjct: 227 TWNSMIDGYVKNGEIGAARELFEEMPERDL----FSWNSMIAGYVGNGDMTAAEDLFNKM 282
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
+ ++V + C++D + + A E MP+
Sbjct: 283 PFR-DIV----SWNCMIDGYAQVQNMEIACELFNWMPY 315
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 177/294 (60%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M K+ +VSW +I +++N EA+ ++ M + P+ + SVL +C
Sbjct: 266 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGM--EADGFEPDAVSITSVLPACG-- 321
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ L LGK++HGYI R +++ ++ + ALID+Y K GCL+RA VF++M +DV +W
Sbjct: 322 -DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMIS+ + R +A+ +F +M++ GL + I FV L AC+ A L+E G F M
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+++ P +EH C+VDLLGRAG + EA +F++ MP EP+ V GALLGAC++H D+
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+L +L P+ G YV+LSNI+A RW T++R M G++K P S +E
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 554
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 25/278 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y D+ +A +F+ + +R+V+ +I +V NG + E I VF M V+
Sbjct: 81 LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSC--HVK 138
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C+ G + +GK++HG + + ++F+G L+ +YGK G L A
Sbjct: 139 PDHYTFPCVLKACSC---SGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 195
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR- 179
V M +DV +WN++++ A N R +AL + EM+ + + T ++L A +
Sbjct: 196 RLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 255
Query: 180 -AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDA 235
+ V ++F M GK +V + ++ + + + EA E M FEPDA
Sbjct: 256 TTENVMYVKDMFFKM-GKKSLV----SWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDA 310
Query: 236 SVLGALLGAC----------KIHGAVDLCHEVGRRLLE 263
+ ++L AC KIHG ++ + LLE
Sbjct: 311 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIIN--GFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G +D A +FENM RDVVSWT++I+ GF GC +A+ +F M + L
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGC--DAVALFSKMQ-DSGL 407
Query: 59 VRPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V P+ +V+ L++C AGL+ EG Y +I + ++DL G+ G
Sbjct: 408 V-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY----KITPRLEHLACMVDLLGRAGK 462
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEM 158
++ A + + M ++ + W A++ + +S L+ D++
Sbjct: 463 VKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKL 505
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ VH I+ ++ + +G L+ Y + + A +VF + ++V N MI S +N
Sbjct: 60 RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+E + +F M ++ + TF VL AC+ + + +G ++ H K + +
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKI-HGSATKVGLSSTLFV 178
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
+V + G+ G LSEA+ + M
Sbjct: 179 GNGLVSMYGKCGFLSEARLVLDEM 202
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +++ + +F K+ W +II+G + NG +AI +FK M+ + V
Sbjct: 366 LIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQML--MEAVD 423
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+AT S+L + A L + L + +HGY++R+ + + + T LID+Y K G LE A
Sbjct: 424 PNDATLNSLLPAYAFLTD---LQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESA 480
Query: 121 IRVFKSMVIKD--VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + KD + TW+A+I+ + + A+ +FD+M + G++ NEITF ++L AC+
Sbjct: 481 HNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACS 540
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A LV+ GL LF ML ++ +HY CV+DLLGRAG L EA E +R+M F P+ +V
Sbjct: 541 HAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVW 600
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLG+C IH V+L + L EL+P + G YV+L+NI++ + RW A +R M
Sbjct: 601 GALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNI 660
Query: 299 GIRKIPAYSLIE 310
G+RK PA+SLIE
Sbjct: 661 GLRKTPAHSLIE 672
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 7/250 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+MD A ++F M KRDVVSWT+++NG++ NG A+ + + M V+
Sbjct: 265 LLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMM--QFESVK 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVLS+CA L + L G+ +HG+ +R ++ V + TALID+Y K + +
Sbjct: 323 PNFVTLASVLSACASLYS---LKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLS 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + WNA+IS N ++A+ +F +M + + N+ T ++L A A
Sbjct: 380 FRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFL 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-FEPDASVLG 239
++ + H L + + +E ++D+ + G L A +P + D
Sbjct: 440 TDLQQARNM-HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWS 498
Query: 240 ALLGACKIHG 249
A++ +HG
Sbjct: 499 AIIAGYGMHG 508
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 101/174 (58%), Gaps = 5/174 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ G+M+ A +F+ M +R +VSW ++ING+ +NGC EA+ VF M+G + P+ A
Sbjct: 168 YMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG--IEPDCA 225
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL C+ L L +G++VH + + + + +L+D+Y K G ++ A +F
Sbjct: 226 TVVSVLPVCSYLKE---LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF 282
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
M +DV +W M++ N + AL++ M+ + ++ N +T +VL+ACA
Sbjct: 283 YEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 106/214 (49%), Gaps = 7/214 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG- 75
LF+ + + SW ++I + +G +A+ +F M+ + P+ TY V+ +C
Sbjct: 78 LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLAS-GRRWPDNYTYPFVIKACGDY 136
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
L+ E +G +H + + F+ +L+ +Y G +E A RVF M + + +W
Sbjct: 137 LLPE----MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSW 192
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N MI+ N KEAL++FD M KG+ + T V+VL C+ + +E+G + H+++
Sbjct: 193 NTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVE 251
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + + ++D+ + G + EA+ M
Sbjct: 252 VKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEM 285
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF---MGTALIDLYGKVGCLERA 120
A Y S+L C + + KQ+H + + ++ S + + ++L Y GC A
Sbjct: 19 ARYQSLLQRC---TSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHA 75
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACAR 179
++F + + +WNAMI ++ +AL +F +M G R + T+ V+ AC
Sbjct: 76 RKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGD 135
Query: 180 AQLVELG 186
L E+G
Sbjct: 136 YLLPEMG 142
>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 187/312 (59%), Gaps = 4/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENML-KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY +GD+ +A LFE M K+D+ +W ++I + +NGC EA+ VF M+ V
Sbjct: 226 MISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWV 285
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ SV+S+C+ L G L G ++ I L + TAL+DL+ K G ++R
Sbjct: 286 MPNEKTFSSVISACSQL---GDLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDR 342
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F+ + ++DV +++A+I N + EA+ +F EM + + N +TFV +L+A +
Sbjct: 343 AFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSN 402
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L+E F SM K+++ P MEHY +VDLLGR+G L EA + + MP +PDAS+ G
Sbjct: 403 AGLMEEARACFASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWG 462
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++H V+L V + EL+P G Y++L NI++ +W + LRK M E G
Sbjct: 463 ALLLACRLHNNVELGEIVASKCFELEPGESGYYILLGNIYSEANKWEKVKRLRKIMAERG 522
Query: 300 IRKIPAYSLIEA 311
+ K+P S ++A
Sbjct: 523 LNKMPGSSWVQA 534
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 28/262 (10%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
+++GD+ +A LF+ M RDVVSW S++ G + G AI +F M N A+
Sbjct: 138 LRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPER------NAAS 191
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ +V+ G + +G L ++ + V S +I Y G + A +F+
Sbjct: 192 WNAVM---CGYIAQGDLAQARE----LFEQMPVRSNVSWITMISGYANSGDVHAAGELFE 244
Query: 126 SMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACARAQL 182
M KD+ WNAMI+ A N +EAL +F+ M + + NE TF +V++AC++
Sbjct: 245 RMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGD 304
Query: 183 VELGL--ELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ GL E F +G + + +H +VDL ++G + A + R + D
Sbjct: 305 LRFGLWAESFMGSVG----IELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMR-DVVSYS 359
Query: 240 ALLGACKIHG----AVDLCHEV 257
A++ C ++G AV L E+
Sbjct: 360 AIIVGCGMNGKFNEAVSLFKEM 381
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A LF ++ RDVV+WT+++ G+ + G EAI +F+ M ++
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG--IK 396
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ S L+SC+ + L GK +H ++ L V++ +AL+ +Y K G ++ A
Sbjct: 397 PDKMTFTSALTSCS---SPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDA 453
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++V W AMI+ A + R +EAL F++MK++G++ +++TF +VL+AC
Sbjct: 454 RLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHV 513
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM + + P++EHY C VDLLGRAG L EA+ + +MPF+P SV GA
Sbjct: 514 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGA 573
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V+ +L+L P G YV LSNI+A R+ A +R+ M + +
Sbjct: 574 LLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDV 633
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 634 VKEPGQSWIE 643
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 128/245 (52%), Gaps = 7/245 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ A ++F+ + +++VV+WT +I G+ + G A+ + + M V PN+
Sbjct: 242 YAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE--VAPNKI 299
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY S+L C + L GK+VH YI+++ +++ ALI +Y K G L+ A ++F
Sbjct: 300 TYTSILQGCTTPL---ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLF 356
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ +DV TW AM++ A EA+ +F M+++G++ +++TF + LT+C+ ++
Sbjct: 357 GDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQ 416
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G + ++ + + +V + + G + +A+ M E + A++
Sbjct: 417 EGKSIHQQLVHAGYSLDVYLQ-SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITG 474
Query: 245 CKIHG 249
C HG
Sbjct: 475 CAQHG 479
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 116/233 (49%), Gaps = 20/233 (8%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ + R++VSWT++I FV EA ++ M + +P++
Sbjct: 141 YAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETM--KLAGCKPDKV 198
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VS+L++ N L +G++VH I + + L +GT+L+ +Y K G + +A +F
Sbjct: 199 TFVSLLNA---FTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ K+V TW +I+ A + AL + ++M++ + N+IT+ ++L C +E
Sbjct: 256 DKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALE 315
Query: 185 LGLELFHSMLGKFEVVPIMEHYG-------CVVDLLGRAGLLSEAKEFMRSMP 230
G ++ + I YG ++ + + G L EA++ +P
Sbjct: 316 HGKKVHRYI--------IQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 121/245 (49%), Gaps = 11/245 (4%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K D ++ + ++ + G EA+ + M+ + R + +L CA L + L
Sbjct: 58 KVDTLANSGDVSILCKQGRLKEALGILNTMI--LQGTRVYSDVFRGLLQECARLRS---L 112
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
G++VH IL++ I + ++ L+ +Y K G L A RVF + +++ +W AMI +
Sbjct: 113 EQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAF 172
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVV 200
+ ++ EA ++ MK G + +++TFV++L A +L+++G ++ H + K E+
Sbjct: 173 VAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV-HMEIAKAGLELE 231
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260
P + +V + + G +S+A+ +P E + L+ G VD+ E+ +
Sbjct: 232 PRVG--TSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALELLEK 288
Query: 261 LLELQ 265
+ + +
Sbjct: 289 MQQAE 293
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + G +D+A +FE M +RD +W+++I + +N EA+ F+ M+ VR
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VR 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +S+L+ CA L L G++VH +LR + VF +ALI +Y K G L++A
Sbjct: 331 PNYPSVISILTVCAAL---AVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KD+ WN+MI+ A + ++AL +F +M+ G+ + IT++ LTAC+
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G E+F+SM + P EHY C+VDLLGR+GL+ EA + +++MP EPDA + GA
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+GAC++H ++ ++LLEL+P + G YV+LS+I+ + RW A+ +RK + +
Sbjct: 508 LMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 568 NKSPGCSWIE 577
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G + A LF+ M KR+VVSWT++I+G+ +NG A +F+ M
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----- 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G + G + ++ + + + A++ +G+ G ++ A
Sbjct: 235 -NEVSWTAML---VGYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +D TW+AMI + N EAL F EM +G+R N + +++LT CA
Sbjct: 287 KTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAAL 346
Query: 181 QLVELGLELFHSML 194
+++ G E+ +ML
Sbjct: 347 AVLDYGREVHAAML 360
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 29/267 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
++ GY +N D+A+ LF M RD+ S+ ++I+G +R +A ++
Sbjct: 54 LLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI------- 106
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLE 118
P + VS S G V G L ++ + RN + +V +G L+D G +
Sbjct: 107 -PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG-GLLD----AGRVN 160
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F M +DV W AM+S R EA +FDEM ++ N +++ A+++ A
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR----NVVSWTAMISGYA 216
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDAS 236
+ V L +L FEV+P L+G +AG + +A E +MP P A+
Sbjct: 217 QNGEVNLARKL-------FEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE 263
++G + G VD V ++ E
Sbjct: 270 CNAMMVGFGQ-RGMVDAAKTVFEKMRE 295
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G +N +D A ++FE M KRDVVSWT+II+ +V+ G A+ +F +M+ ++
Sbjct: 627 LISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARG--IK 684
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T S+LS+C L G + LG+Q H I + +F+G +LI +Y K G E
Sbjct: 685 PNQLTVTSLLSACGNL---GAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDG 740
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M D+ TWNA++ A N KEA+ +F++M+ +G+ ++++F+ VL AC+ A
Sbjct: 741 FCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHA 800
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+SM K+ ++P++ HY C+VDLLGRAG LSEA+ + +MP +PD+ + A
Sbjct: 801 GLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEA 860
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V+L V RL ++ YV+LSN+ A W++ ++RK M + G+
Sbjct: 861 LLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGL 920
Query: 301 RKIPAYSLIE 310
K P S I+
Sbjct: 921 TKEPGISWIQ 930
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 114/196 (58%), Gaps = 9/196 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +NG + A LF+ M ++ SW ++I GFV+N EA+ + + + ++
Sbjct: 495 IIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV-- 552
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+++++ S LS+CA N G + +G+ +H ++ + ++ LI +Y K G +E
Sbjct: 553 PSDSSFTSALSACA---NIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDG 609
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+++ +KD +WN++IS L+ N +A V+F++M ++ + +++ A+++A +A
Sbjct: 610 SHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDV----VSWTAIISAYVQA 665
Query: 181 QLVELGLELFHSMLGK 196
E+ L+LF ML +
Sbjct: 666 GHGEVALDLFLDMLAR 681
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSI---------------------------- 32
MI GYV+NGD+ +A LF+ M +++V SW S+
Sbjct: 270 MISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSW 329
Query: 33 ---INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
I+G+V + EA VF M V RP+++ +V VLS+ GL + L L +
Sbjct: 330 MVMISGYVHISDYWEAWDVFVKMCRTV--ARPDQSIFVVVLSAITGLDD---LELIGSLR 384
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
++ V +G+A+++ Y + G L+ A+ F++M ++ +W MI++ A R
Sbjct: 385 PIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLD 444
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +++ + E+ + T A++TA A+ ++ +F +L P + + +
Sbjct: 445 DAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEILN-----PNVVAWNAI 495
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
+ + G+L EAK+ + MP + AS + G + +E R LEL
Sbjct: 496 IAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQ--------NEESREALEL 542
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y +NG +D A+ FE M +R+ SWT++I F + G +AI +++ R
Sbjct: 402 ILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYE---------R 452
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T + + G + + + IL +V A+I Y + G L+ A
Sbjct: 453 VPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVV----AWNAIIAGYTQNGMLKEA 508
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ M +K+ +W AMI+ N +EAL + E+ G ++ +F + L+ACA
Sbjct: 509 KDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568
Query: 181 QLVELGLELFHSM 193
VE+G + HS+
Sbjct: 569 GDVEIG-RVIHSL 580
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 48/185 (25%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G ++ A +F M++RDVVSW S+ING+ +NG EA +F
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD------------------ 226
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
++GK + + T L+ Y K G +E A VF+SM
Sbjct: 227 -------------AFVGKNIRTW-------------TILLTGYAKEGRIEEAREVFESMT 260
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++V +WNAMIS N K A +FDEM EK N ++ +V+T + E
Sbjct: 261 ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK----NVASWNSVVTGYCHCYRMSEARE 316
Query: 189 LFHSM 193
LF M
Sbjct: 317 LFDQM 321
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 28/237 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI+GY +NG +D A LLF+ + +++ +WT ++ G+ + G EA VF++M
Sbjct: 208 MINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESM-------- 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS + +G V G L +++ + +V +++ Y + A
Sbjct: 260 -TERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK----NVASWNSVVTGYCHCYRMSEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++ +W MIS S EA +F +M R ++ FV VL+A
Sbjct: 315 RELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGL 374
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY-------GCVVDLLGRAGLLSEAKEFMRSMP 230
+EL +G + I Y +++ R G L A F +MP
Sbjct: 375 DDLEL--------IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP 423
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
+F I G++G +E A RVF M+ +DV +WN+MI+ + N + EA ++FD
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
K +R T+ +LT A+ +E E+F SM + V + ++ + G L
Sbjct: 231 KNIR----TWTILLTGYAKEGRIEEAREVFESMTERNVV-----SWNAMISGYVQNGDLK 281
Query: 221 EAKEFMRSMPFEPDASVLGALLGAC 245
A++ MP + AS + G C
Sbjct: 282 NARKLFDEMPEKNVASWNSVVTGYC 306
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K+ +D AI +F+ M ++DVVSW+S+I GF N EA+ F+ M+G+V +
Sbjct: 440 LLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHV---K 496
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+++ LS+CA G L GK++H Y+LR I ++ AL+DLY K G A
Sbjct: 497 PNSVTFIAALSACAA---TGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYA 553
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F KDV +WN M+S ++ AL +F++M E G +E+TFVA+L AC+RA
Sbjct: 554 WAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V G ELFH M KF +VP ++HY C+VDLL R G L+EA + MP +PDA+V GA
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V+L + +LEL+P +V+L +++ +W + +RK M E G+
Sbjct: 674 LLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 733
Query: 301 RKIPAYSLIE 310
+ S +E
Sbjct: 734 EQDNGCSWVE 743
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ V+ G++ A +F M +RDV SW ++ G+ + G EA+ ++ M+ +R
Sbjct: 137 MLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG--MR 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C G+ + +G++VH ++LR V + AL+ +Y K G + A
Sbjct: 195 PDVYTFPCVLRTCGGIPD---WRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + D +WNAMI+ N + L +F M E ++ N +T +V A
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTV--ASG 309
Query: 181 QLVELGL 187
L E+G
Sbjct: 310 MLSEVGF 316
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K GD+ +A +F+ M D +SW ++I G N + +F M+ N V+
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE--VQ 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SV + +G+++E G K++HG+ ++ + V +LI +Y +G + A
Sbjct: 296 PNLMTITSV-TVASGMLSEVGF--AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDA 352
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M KD +W AMIS N +AL ++ M+ + +++T + L ACA
Sbjct: 353 GKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACL 412
Query: 181 QLVELGLEL 189
+++G++L
Sbjct: 413 GRLDVGIKL 421
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+G A++ + + G + A RVF M +DV +WN M+ +EAL ++ M G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R + TF VL C +G E+ H+ + +F ++ +V + + G + A
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREV-HAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251
Query: 223 KEFMRSM 229
++ M
Sbjct: 252 RKVFDGM 258
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 193/315 (61%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ RDVVSW ++I+G+VR G +A+ +F+ M MG
Sbjct: 218 MITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGE--- 274
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L G+++HG++ + I + +G ALID+Y K G
Sbjct: 275 -KPDTVTMLSLLSACA---DSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGS 330
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A+ VF M K+V TWN++I LA + E++ +F +M + ++ +EITFVAVL A
Sbjct: 331 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAA 390
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F M ++ + P ++HYGC+VD+L R GLL EA EF+ +M EP+
Sbjct: 391 CSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPV 450
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LLGAC+IHG ++L R LL+ + G +V+LSNI+A + W + ++RK M
Sbjct: 451 IWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMD 510
Query: 297 EAGIRKIPAYSLIEA 311
++G+ K ++I++
Sbjct: 511 DSGVNKEAGRAVIDS 525
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 24/261 (9%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-----NVNLVRPNE 63
G A L+F+ + D + ++I G + +A+ ++ M ++ +RP++
Sbjct: 56 GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDK 115
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ VL +CA + G G QVH ++++ F+ ALI ++ +G L A +
Sbjct: 116 RTFPFVLRACAAM---GAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAAL 172
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F +D W+AMIS A A +FDE K L +++ ++TA A+ +
Sbjct: 173 FDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDL----VSWNVMITAYAKLGDM 228
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGA 240
ELF + +VV + ++ R G +A E M++M +PD + +
Sbjct: 229 APARELFDGAPDR-DVVS----WNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283
Query: 241 LLGACKIHGAVDLCHEVGRRL 261
LL AC G +D GRRL
Sbjct: 284 LLSACADSGDLD----AGRRL 300
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GD+D+A LF+ M +RD V+W +++ G+VR G EA+ +F M V
Sbjct: 196 MLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAV- 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T VSVL++CA + G L G VH Y+ + +SV +GTAL+D+Y K G + +
Sbjct: 255 -SEVTLVSVLTACAQM---GALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMS 310
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF++M +++ TW + +S LA N +E L +F M+ G+ N +TFVAVL C+ A
Sbjct: 311 MEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVA 370
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM K +V P +EHYGC+VDL GRAG L +A +F+ SMP EP V GA
Sbjct: 371 GLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGA 430
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH VDL +L E++ K+ +V+LSNI+A W + +R M G+
Sbjct: 431 LLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGV 490
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 491 KKMPGCSAIE 500
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TA++ G ++ A +F M +D WNAM++ R +EAL +FDEM++ G+
Sbjct: 194 TAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVA 253
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+E+T V+VLTACA+ +E G+ HS + + + +VD+ + G+++ + E
Sbjct: 254 VSEVTLVSVLTACAQMGALERGM-WVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSME 312
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
+M E + + L ++G + C E+ +R+
Sbjct: 313 VFETM-RERNIYTWTSALSGLAMNGMGEECLELFKRM 348
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 192/306 (62%), Gaps = 11/306 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ + +RDVVSW +I+G+VR G A+ +F+ M MG
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE--- 241
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI--LRNEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L +G+++H + + + V +G ALID+Y K G
Sbjct: 242 -KPDIVTMLSLLSACA---DSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGS 297
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
++ A VF SM KDV TWN+++ LA + E++ MF++M + +R +EITFVAVL A
Sbjct: 298 MKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIA 357
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F+ M K+ V P ++HYGC+VD+LGRAGLL EA EF+ +M EP++
Sbjct: 358 CSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSV 417
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LL AC++HG ++L R+LL+ + G YV+LSNI+A + W + +RK M
Sbjct: 418 IWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMD 477
Query: 297 EAGIRK 302
++G+ K
Sbjct: 478 DSGVNK 483
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 18/274 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL--VRPNEATY 66
G + A L+F+ + + D + ++I G +A+ ++ M+ VRP++ T+
Sbjct: 26 GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VL +C + G G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 86 PFVLRACTAM---GAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDG 142
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+D W+AMI+ A A +FDE K L +++ ++TA A+ + L
Sbjct: 143 RAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDL----VSWNVMITAYAKRGDMALA 198
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLG 243
ELF + + +VV + ++ R G A E M+ M +PD + +LL
Sbjct: 199 RELFDQVPER-DVVS----WNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLS 253
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277
AC G +D+ + L ++ ++ G VVL N
Sbjct: 254 ACADSGDLDVGQRLHSSLSDMFSRN-GFPVVLGN 286
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 187/316 (59%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K+ + +A +F + ++D+VSW ++I G+ +NG EA+ +F+ M V
Sbjct: 330 MVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR--MLKRESVC 387
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P T+ ++L++ A L + L LG+Q H +++++ +F+G +LID+Y K
Sbjct: 388 PTHYTFGNLLNASANLAD---LELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKC 444
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G +E +RVF++MV KD +WN MI A N EAL +F +M E G + + +T + L
Sbjct: 445 GSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTL 504
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
AC+ A LVE G F SM + ++P+ +HY C+VDLLGRAG L EAK+ + SMP +PD
Sbjct: 505 CACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPD 564
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A V +LL ACK+H + L V ++ E+ P G YV+L+N+++ L RW A +RK
Sbjct: 565 AVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKL 624
Query: 295 MVEAGIRKIPAYSLIE 310
M G+ K P S I+
Sbjct: 625 MRRRGVVKQPGCSWID 640
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 9/232 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I ++ G +D + LF M ++D SW S+I GF ++ F EA+ F M + ++
Sbjct: 96 IISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVL- 154
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ ++ S LS+C+ L + L LG Q+HG I +++ L VFMG+ LID Y K G + A
Sbjct: 155 -NDYSFGSGLSACSRLKD---LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCA 210
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M K+V +WN +I+ N EAL F M E G + +E+T +V++ACA
Sbjct: 211 RRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATL 270
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ G+++ ++ KF I+ + +VD+ + G ++EA+ MP
Sbjct: 271 AAFKEGVQIHARVVKSDKFRNDLILGN--ALVDMYAKCGRVNEARCVFDRMP 320
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 49/226 (21%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+ID Y K G + A +F+ M +++VVSW +I + +NG EA+ F M +G
Sbjct: 197 LIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELG---- 252
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGK 113
+P+E T SV+S+CA L G Q+H + RN+++L G AL+D+Y K
Sbjct: 253 FKPDEVTLASVVSACATL---AAFKEGVQIHARVVKSDKFRNDLIL----GNALVDMYAK 305
Query: 114 VGCLERAIRVFKSMVI-------------------------------KDVCTWNAMISSL 142
G + A VF M + KD+ +WNA+I+
Sbjct: 306 CGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGY 365
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
N +EAL +F +K + + TF +L A A +ELG +
Sbjct: 366 TQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM----------VI----- 129
+ VHG +++ VF+ LID+YGK G L+ A +VF M +I
Sbjct: 43 ARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMR 102
Query: 130 ----------------KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
KD C+WN+MI+ A + R +EAL F M N+ +F +
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+AC+R + ++LG ++ H ++ K + + ++D + GL+ A+ M
Sbjct: 163 LSACSRLKDLKLGAQI-HGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGM 217
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+DSA +F M+K+D V+WT++I + +NG EA +F M V
Sbjct: 274 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM--EKTGVS 331
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VLS+C + G L LGKQ+ + + ++++ T L+D+YGK G +E A
Sbjct: 332 PDAGTLSTVLSACGSV---GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M +K+ TWNAMI++ A KEAL++FD M + ++ITF+ VL+AC A
Sbjct: 389 LRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHA 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G FH M F +VP +EHY ++DLL RAG+L EA EFM P +PD +L A
Sbjct: 446 GLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAA 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL-QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LGAC V + + R L+E+ + K+ G YV+ SN+ A ++ W+ + +R M + G
Sbjct: 506 ILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRG 565
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 566 VVKTPGCSWIE 576
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A LF+ + +RD VSW S+I+G+ G +A+ +F+ M P+E
Sbjct: 177 YAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM--EEEGFEPDER 234
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L +C+ L G L G+ + + +I LS F+G+ LI +YGK G L+ A RVF
Sbjct: 235 TLVSMLGACSHL---GDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVF 291
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ KD W AMI+ + N + EA +F EM++ G+ + T VL+AC +E
Sbjct: 292 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 351
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
LG ++ + + + + +VD+ G+ G + EA +MP + +A+
Sbjct: 352 LGKQI-ETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT 402
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEA-ICVFKNMMGNVNLV 59
+I V+ GD + + LF + + S+ +I G EA + +++ M + +
Sbjct: 71 LIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRM--KFSGL 128
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P++ TY V +CA L G +G+ VH + + + V + +LI +Y K G +
Sbjct: 129 KPDKFTYNFVFIACAKLEEIG---VGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGY 185
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +D +WN+MIS + K+A+ +F +M+E+G +E T V++L AC+
Sbjct: 186 ARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSH 245
Query: 180 ------AQLVE-------LGLELFH-----SMLGK----------FEVVPIMEH--YGCV 209
+L+E +GL F SM GK F + + + +
Sbjct: 246 LGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAM 305
Query: 210 VDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
+ + + G SEA + M PDA L +L AC GA++L ++ EL
Sbjct: 306 ITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSL 365
Query: 267 KH 268
+H
Sbjct: 366 QH 367
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + D+D+A +F+ +++ VV + ++I G+ R EA+ +F+ M G NL +
Sbjct: 172 LINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK-NL-K 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLSSCA L G L LGK +H Y ++ V + TALID++ K G L+ A
Sbjct: 230 PNEITLLSVLSSCALL---GSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F++M KD W+AMI + A++ + + +++MF+ M+ + ++ +EITF+ +L AC+
Sbjct: 287 VSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHT 346
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G E F M+ +F +VP ++HYG +VDLLGRAG L +A EF+ +P P +
Sbjct: 347 GLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRI 406
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC H ++L +V R+LEL H G YV+LSN++A ++W LRK M +
Sbjct: 407 LLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKA 466
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 467 VKVPGCSSIE 476
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 7/242 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ M + D+V + SI G+ R+ E +F ++ + L P+ T+ S+L
Sbjct: 81 MSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLL--PDNYTFPSLL 138
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA L G+Q+H ++ + +V++ LI++Y + ++ A VF +V
Sbjct: 139 KACAV---AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEP 195
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
V +NAMI+ A +R EAL +F EM+ K L+ NEIT ++VL++CA ++LG +
Sbjct: 196 CVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLG-KWI 254
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
H K ++ ++D+ + G L +A +M ++ D A++ A HG
Sbjct: 255 HEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYK-DTQAWSAMIVAYANHGQ 313
Query: 251 VD 252
+
Sbjct: 314 AE 315
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
M+ G + G +D A LF+ M +R+++SW ++I+G+V+ G F +A+ VF M +G
Sbjct: 167 MVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALG---- 222
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ N S + +C G G L G++VH ++ ++ I + + TA++D+Y K G +E
Sbjct: 223 IEGNGFVAASAVVACTG---AGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVE 279
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VFK + K + +WN MI LA + R K+A+ +F EM+ + + +++T V VLTACA
Sbjct: 280 EAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACA 339
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+V G F+ ++ ++ + P MEHYGC+VDL GRAGLL EAK+ + MP EPD VL
Sbjct: 340 HTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVL 399
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GAL GACKIH +DL +G R++EL P++ GRYV+L+N+ A +W +R+ M E
Sbjct: 400 GALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDER 459
Query: 299 GIRKIPAYSLIE 310
+ K S+IE
Sbjct: 460 NVSKEAGRSVIE 471
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
L V T ++ ++G ++ A ++F M +++ +WNAMIS R +AL +FD+M
Sbjct: 159 LDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQM 218
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
+ G+ N + + AC A ++ G E+ H + + + + VVD+ + G
Sbjct: 219 RALGIEGNGFVAASAVVACTGAGVLARGREV-HRWVEQSGITMDEKLATAVVDMYCKCGS 277
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGR 259
+ EA + +P + S ++G +HG A++L HE+ R
Sbjct: 278 VEEAWHVFKVLPTKGLTS-WNCMIGGLAVHGRCKDAIELFHEMER 321
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 186/302 (61%), Gaps = 7/302 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G K G+++ A L F M RD+VSW S++ G+ G F + +M+ + V
Sbjct: 238 IVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMV--MEKVI 295
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +S++S+ G L G+ HG+++R +I L F+G+ALID+Y K G +ERA
Sbjct: 296 PDTVTMISLVSAAT---ESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERA 352
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVFK + KDV W MI+ LA + +AL +F EM+E + +++TFV+VL+AC+ +
Sbjct: 353 SRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQED-VSPDDVTFVSVLSACSHS 411
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+++F SM + + P +EHYGC+VDLL R+G LSEAK+ + MP +P S+ GA
Sbjct: 412 GLVDQGIKVFSSMT-DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGA 470
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC+ G V+L R LL L P+ G Y +LSNI+A RW+ + +R+ M G+
Sbjct: 471 MLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGV 530
Query: 301 RK 302
+K
Sbjct: 531 KK 532
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y++NG + A +FE M D+VS+ +I G+ + G EA+ +F M+G +
Sbjct: 104 LIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLG--LE 161
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
P+E T + +L SC L G + GK VHG++ R + +S + +G AL+D+Y K +E
Sbjct: 162 PDEFTILGLLVSCGQL---GNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVE 218
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
A+R F ++ KD+ +WN +++ A ++A + F +M
Sbjct: 219 LALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H + + ++ LI +Y + G + A +VF+ M D+ ++N MI A
Sbjct: 83 KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKK 142
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
EA+ +F EM GL +E T + +L +C + V+ G
Sbjct: 143 GFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFG 183
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y + GD+ SA LF+ M +RD VSW S+I G+ +NG +AI +F+ M+ + + +
Sbjct: 328 MISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRK 387
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV S+C L G L LG + N I +S+ + +LI++Y + G ++ A
Sbjct: 388 PDEVTMVSVFSACGHL---GELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDA 444
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +D+ ++N +IS A + E++ + +MKE G+ + IT++A+LTAC+ A
Sbjct: 445 VLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHA 504
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G LF S+ KF P ++HY C++D+LGRAG L EA + ++SMP EP A + G+
Sbjct: 505 GLLDEGQRLFESI--KF---PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGS 559
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A IH V+L +L +++P + G Y +LSNI+A RW +R M + G+
Sbjct: 560 LLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGV 619
Query: 301 RKIPAYSLIE 310
+K S +E
Sbjct: 620 KKTTGLSWLE 629
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 48/262 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K G++ +A + F+ M +R VVSW ++++G+ + G E I +F +M+ N V+
Sbjct: 191 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGN-VQ 249
Query: 61 PNEATYVSVLSSCAGLVN-------------------------------------EGGLY 83
P+E T+ +V+SSC+ L + E
Sbjct: 250 PDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHK 309
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ +Q+ Y R+ + + A+I Y +VG L A +F M +D +WN+MI+
Sbjct: 310 IFEQLGVYKYRSSVPWN-----AMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYT 364
Query: 144 SNSREKEALVMFDEM--KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
N +A+ +F+EM E + +E+T V+V +AC L ELGL + + K +
Sbjct: 365 QNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC--GHLGELGLGNWAVSILKVNHIQ 422
Query: 202 I-MEHYGCVVDLLGRAGLLSEA 222
I + Y ++++ R G + +A
Sbjct: 423 ISISVYNSLINMYSRCGSMQDA 444
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 19/250 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEA-ICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
+F DV +T ++ + + G + + +FK+M+ + + ++PN A++ SV+ AG
Sbjct: 43 IFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCD-IKPN-ASFYSVMMKSAG 100
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
+E L+L ++L++ ++ ++ +Y K G +E A ++F M + V W
Sbjct: 101 --SESMLFLA-----HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADW 153
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N MIS E+EA +F M ++ + N IT+ ++T A+ ++ F M
Sbjct: 154 NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 213
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAV 251
+ V + ++ + G E M +PD + ++ +C G
Sbjct: 214 RSVVS-----WNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDP 268
Query: 252 DLCHEVGRRL 261
L + R+L
Sbjct: 269 CLSESIVRKL 278
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 27/237 (11%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A LF+ M R V W +I+G+ + G EA +F ++MG+ + R N
Sbjct: 129 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLF-HVMGDQEISR-NVI 186
Query: 65 TYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
T+ ++++ A G + +Y K SV A++ Y + G E IR
Sbjct: 187 TWTTMITGHAKKGNLKTARMYFDKMPE---------RSVVSWNAMLSGYAQGGAPEETIR 237
Query: 123 VFKSM-----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTA 176
+F M V D TW +ISS +S + + ++ +K G R N A+L
Sbjct: 238 LFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDM 297
Query: 177 CARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
A+ +E ++F LG ++ VP + ++ R G L AK MP
Sbjct: 298 HAKCGNLEAAHKIF-EQLGVYKYRSSVP----WNAMISAYARVGDLPSAKHLFDKMP 349
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + G +D+A +FE M +RD +W+++I + +N EA+ F+ M+ VR
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VR 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +S+L+ CA L L G++VH +LR + VF +ALI +Y K G L++A
Sbjct: 331 PNYPSVISILTVCAALAV---LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KD+ WN+MI+ A + ++AL +F +M+ G+ + IT++ LTAC+
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G E+F+SM + P EHY C+VDLLGR+GL+ EA + +++MP EPDA + GA
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+GAC++H ++ ++LLEL+P + G YV+LS+I+ + RW A+ +RK + +
Sbjct: 508 LMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 568 NKSPGCSWIE 577
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 29/274 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G + A LF+ M KR+VVSWT++I+G+ +NG A +F+ M
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----- 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G + G + ++ + + + A++ +G+ G ++ A
Sbjct: 235 -NEVSWTAML---VGYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +D TW+AMI + N EAL F EM +G+R N + +++LT CA
Sbjct: 287 KTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAAL 346
Query: 181 QLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP-DAS 236
+++ G E+ +ML +V + ++ + + G L +AK + FEP D
Sbjct: 347 AVLDYGREVHAAMLRCSFDMDVFAV----SALITMYIKCGNLDKAKRVFHT--FEPKDIV 400
Query: 237 VLGALLGACKIHG----AVDLCHEVGRRLLELQP 266
+ +++ HG A+ + H++ RL + P
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDM--RLAGMSP 432
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 29/267 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
++ GY +N D+A+ LF M RD+ S+ ++I+G +R +A ++
Sbjct: 54 LLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI------- 106
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLE 118
P + VS S G V G L ++ + RN + +V +G L+D G +
Sbjct: 107 -PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG-GLLD----AGRVN 160
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F M +DV W AM+S R EA +FDEM ++ N +++ A+++ A
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR----NVVSWTAMISGYA 216
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDAS 236
+ V L +L FEV+P L+G +AG + +A E +MP P A+
Sbjct: 217 QNGEVNLARKL-------FEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE 263
++G + G VD V ++ E
Sbjct: 270 CNAMMVGFGQ-RGMVDAAKTVFEKMCE 295
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 193/315 (61%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ RDVVSW ++I+G+VR G +A+ +F+ M MG
Sbjct: 218 MITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGE--- 274
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G L G+++HG++ + I + +G ALID+Y K G
Sbjct: 275 -KPDTVTMLSLLSACA---DSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGS 330
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A+ VF M K+V TWN++I LA + E++ +F +M + ++ +EITFVAVL A
Sbjct: 331 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAA 390
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F M ++ + P ++HYGC+VD+L R GLL EA EF+ +M EP+
Sbjct: 391 CSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPV 450
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LLGAC+IHG ++L R LL+ + G +V+LSNI+A + W + ++RK M
Sbjct: 451 IWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMD 510
Query: 297 EAGIRKIPAYSLIEA 311
++G+ K ++I++
Sbjct: 511 DSGVNKEAGRAVIDS 525
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 24/261 (9%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-----NVNLVRPNE 63
G A L+F+ + D + ++I G + +A+ ++ M ++ +RP++
Sbjct: 56 GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDK 115
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ VL +CA + G G QVH ++++ F+ ALI ++ +G L A +
Sbjct: 116 RTFPFVLRACAAM---GAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAAL 172
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F +D W+AMIS A A +FDE K L +++ ++TA A+ +
Sbjct: 173 FDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDL----VSWNVMITAYAKLGDM 228
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGA 240
ELF + +VV + ++ R G +A E M++M +PD + +
Sbjct: 229 APARELFDGAPDR-DVVS----WNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283
Query: 241 LLGACKIHGAVDLCHEVGRRL 261
LL AC G +D GRRL
Sbjct: 284 LLSACADSGDLD----AGRRL 300
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 190/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+ + G +D+A +FE M +RD +W+++I + +N EA+ F+ M+ VR
Sbjct: 273 MMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG--VR 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +S+L+ CA L L G++VH +LR + VF +ALI +Y K G L++A
Sbjct: 331 PNYPSVISILTVCAAL---AVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + KD+ WN+MI+ A + ++AL +F +M+ G+ + IT++ LTAC+
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G E+F+SM + P EHY C+VDLLGR+GL+ EA + +++MP EPDA + GA
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+GAC++H ++ ++LLEL+P + G YV+LS+I+ + RW A+ +RK + +
Sbjct: 508 LMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 568 NKSPGCSWIE 577
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G + A LF+ M KR+VVSWT++I+G+ +NG A +F+ M
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----- 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G + G + ++ + + + A++ +G+ G ++ A
Sbjct: 235 -NEVSWTAML---VGYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +D TW+AMI + N EAL F EM +G+R N + +++LT CA
Sbjct: 287 KTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAAL 346
Query: 181 QLVELGLELFHSML 194
+++ G E+ +ML
Sbjct: 347 AVLDYGREVHAAML 360
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 29/267 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
++ GY +N D+A+ LF M RD+ S+ ++I+G +R +A ++
Sbjct: 54 LLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASI------- 106
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLE 118
P + VS S G V G L ++ + RN + +V +G L+D G +
Sbjct: 107 -PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG-GLLD----AGRVN 160
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F M +DV W AM+S R EA +FDEM ++ N +++ A+++ A
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR----NVVSWTAMISGYA 216
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDAS 236
+ V L +L FEV+P L+G +AG + +A E +MP P A+
Sbjct: 217 QNGEVNLARKL-------FEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE 263
++G + G VD V ++ E
Sbjct: 270 CNAMMVGFGQ-RGMVDAAKTVFEKMCE 295
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G +D+A +F+ M +RD +W++II + +N EA+ F+ M+ ++ +R
Sbjct: 273 MIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREML-HIG-IR 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +S+L+ CA L L G++VHG +LR + ++ +ALI +Y K G L++A
Sbjct: 331 PNYPSVISILTVCAALAV---LDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF KDV WN+MI+ A + +EAL +FD+M+ G+ + IT++ LTAC+
Sbjct: 388 KRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYT 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G ++F+SM K + P +EHY C+VDLLGRAGL+ EA +++MP EPDA + GA
Sbjct: 448 GKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+GAC++H ++ ++LLEL+P + G YV+LS+I+ RW A+++RK + +
Sbjct: 508 LMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHL 567
Query: 301 RKIPAYSLIE 310
K S IE
Sbjct: 568 NKSLGCSWIE 577
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 30/311 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
++ GY +N D+A+ +F M RD+ S+ ++I+G +R +A +
Sbjct: 54 LLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATI------- 106
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLE 118
P + VS S G V G L Q+ + RN I +V +G L G ++
Sbjct: 107 -PYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFL-----DAGRVD 160
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F M KDV W AM+S R EA +FDEM ++ N +++ A+++ A
Sbjct: 161 EARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKR----NVVSWTAMVSGYA 216
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ V L +LF M + EV +G + +AG + +A+E +MP P A+
Sbjct: 217 QNGQVNLARKLFEVMPERNEVSWTAMLFGYI-----QAGRIEDAEELFNAMPDHPLAACN 271
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G ++G + G VD V R+ E + G + + + E A + M+
Sbjct: 272 GMIVGFGQ-QGMVDAAKSVFDRMCE---RDDGTWSAIIKAYEQNEFLMEALSTFREMLHI 327
Query: 299 GIRKIPAYSLI 309
GIR P Y +
Sbjct: 328 GIR--PNYPSV 336
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 23/253 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + G +D A LF+ M KR+VVSWT++++G+ +NG A +F+ M
Sbjct: 180 MLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER----- 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ ++L G + G + +++ + + + +I +G+ G ++ A
Sbjct: 235 -NEVSWTAML---FGYIQAGRIEDAEELFNAMPDHPLAAC----NGMIVGFGQQGMVDAA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +D TW+A+I + N EAL F EM G+R N + +++LT CA
Sbjct: 287 KSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAAL 346
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYG--CVVDLLGRAGLLSEAKEFMRSMPFEP-DAS 236
+++ G E+ +ML + F+ M+ Y ++ + + G L +AK FEP D
Sbjct: 347 AVLDYGREVHGAMLRRSFD----MDIYAVSALITMYIKCGNLDKAKRVFHM--FEPKDVV 400
Query: 237 VLGALLGACKIHG 249
+ +++ HG
Sbjct: 401 MWNSMITGYAQHG 413
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
AL+ Y + + A+RVF M +D+ ++NA+IS L+ R +
Sbjct: 52 NALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLS--LRRHTLPDAAAALATIPYP 109
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEA 222
+ ++F ++L R L+ ++LF M P H V L G AG + EA
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIQLFRQM-------PERNHISYTVLLGGFLDAGRVDEA 162
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
++ MP + + L G C++ G VD R L + PK
Sbjct: 163 RKLFDEMPAKDVVAWTAMLSGYCQV-GRVD----EARTLFDEMPK 202
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G++ A +F+ M RD +W +I + R G EA+ +F M VR
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG--VR 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S+LS CA L + L G+QVH +++R + V++ + L+ +Y K G L +A
Sbjct: 329 PSFPSLISILSVCATLAS---LQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKA 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF KD+ WN++IS AS+ +EAL +F EM G N++T +A+LTAC+ A
Sbjct: 386 KLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYA 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E GLE+F SM KF V P +EHY C VD+LGRAG + +A E + SM +PDA+V GA
Sbjct: 446 GKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGA 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK H +DL ++L E +P + G YV+LS+I+A +W +RK M +
Sbjct: 506 LLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNV 565
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 566 SKFPGCSWIE 575
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 31/311 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG A LF+ M +R+VVSW +++G+++N EA VF+ M
Sbjct: 54 IVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELM-------- 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + G + EG + + + + RNE+ +V G + D G +++
Sbjct: 106 -PERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD-----GRIDK 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +++ M +KDV MI L R EA ++FDEM+E+ N +T+ ++T +
Sbjct: 160 ARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRER----NVVTWTTMITGYRQ 215
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V++ +LF M K EV G + +G + +A+EF MP +P +
Sbjct: 216 NNRVDVARKLFEVMPEKTEVSWTSMLLGYTL-----SGRIEDAEEFFEVMPMKPVIACNA 270
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++G ++ G + V L+E + R ++ + G E A DL M + G
Sbjct: 271 MIVGFGEV-GEISKARRVF-DLMEDRDNATWRGMIKAYERKGFEL--EALDLFAQMQKQG 326
Query: 300 IRKIPAY-SLI 309
+R P++ SLI
Sbjct: 327 VR--PSFPSLI 335
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G +D A L+F+ M +R+VV+WT++I G+ +N A +F+ M
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM-------- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T VS S G G + ++ + ++ A+I +G+VG + +A
Sbjct: 230 -PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC----NAMIVGFGEVGEISKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +D TW MI + E EAL +F +M+++G+R + + +++L+ CA
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 181 QLVELGLEL 189
++ G ++
Sbjct: 345 ASLQYGRQV 353
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 92 ILRNEIVLSVFMGTAL-IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
ILR + S + + I ++G + A + F S+ K + +WN+++S SN KE
Sbjct: 7 ILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKE 66
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
A +FDEM E+ N +++ +++ + +++ +F M + V + +V
Sbjct: 67 ARQLFDEMSER----NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV-----SWTAMV 117
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDAS---VLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
+ G++ EA+ MP + S + G L+ +I A R+L ++ P
Sbjct: 118 KGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA--------RKLYDMMP- 168
Query: 268 HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
V +N+ GL R R + R E R + ++ +
Sbjct: 169 -VKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTM 209
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+DSA +F M+K+D V+WT++I + +NG EA +F M V
Sbjct: 270 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM--EKTGVS 327
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VLS+C + G L LGKQ+ + + ++++ T L+D+YGK G +E A
Sbjct: 328 PDAGTLSTVLSACGSV---GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 384
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M +K+ TWNAMI++ A KEAL++FD M + ++ITF+ VL+AC A
Sbjct: 385 LRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHA 441
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G FH M F +VP +EHY ++DLL RAG+L EA EFM P +PD +L A
Sbjct: 442 GLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAA 501
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL-QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LGAC V + + R L+E+ + K+ G YV+ SN+ A ++ W+ + +R M + G
Sbjct: 502 ILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRG 561
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 562 VVKTPGCSWIE 572
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A LF+ + +RD VSW S+I+G+ G +A+ +F+ M P+E
Sbjct: 173 YAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM--EEEGFEPDER 230
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L +C+ L G L G+ + + +I LS F+G+ LI +YGK G L+ A RVF
Sbjct: 231 TLVSMLGACSHL---GDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVF 287
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ KD W AMI+ + N + EA +F EM++ G+ + T VL+AC +E
Sbjct: 288 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 347
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
LG ++ + + + + +VD+ G+ G + EA +MP + +A+
Sbjct: 348 LGKQI-ETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT 398
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEA-ICVFKNMMGNVNLV 59
+I V+ GD + + LF + + S+ +I G EA + +++ M + +
Sbjct: 67 LIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRM--KFSGL 124
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P++ TY V +CA L G +G+ VH + + + V + +LI +Y K G +
Sbjct: 125 KPDKFTYNFVFIACAKLEEIG---VGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGY 181
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +D +WN+MIS + K+A+ +F +M+E+G +E T V++L AC+
Sbjct: 182 ARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSH 241
Query: 180 ------AQLVE-------LGLELFH-----SMLGK----------FEVVPIMEH--YGCV 209
+L+E +GL F SM GK F + + + +
Sbjct: 242 LGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAM 301
Query: 210 VDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
+ + + G SEA + M PDA L +L AC GA++L ++ EL
Sbjct: 302 ITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSL 361
Query: 267 KH 268
+H
Sbjct: 362 QH 363
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 182/310 (58%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YV + +D A +F M +DV +WT ++ GF + AI F M+G NL +
Sbjct: 264 LMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNL-K 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + +LSSC+ + G L G++VH ++ ++F+G+A+ID+Y G LE A
Sbjct: 323 LDSIVLMGILSSCS---HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDA 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F M KDV WNAMI+ N +A+ +F +MK GL +E TFV+VL AC+ A
Sbjct: 380 KRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHA 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GL++F+ M+ +P ++HY CV+D+LGRAG L A F+ +MPF+PD V
Sbjct: 440 GMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYST 499
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG + L HE+ +++ E++P G YV+LSN++A W R ++ +
Sbjct: 500 LLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRL 559
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 560 KKDPGFSSIE 569
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 7/187 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+++ YV G + A +F + ++VVSWT +I+G +N CF EAI VF+ M MGN
Sbjct: 62 LMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNF--- 118
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PN T SVL + A L G + + K VH + +R +VF+ TAL+D+Y K GC+
Sbjct: 119 KPNAVTISSVLPAFANL---GLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGV 175
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+SM ++V +WNA++S + + +EA+ +F+ M+ KGL + T ++++ A
Sbjct: 176 ARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLS 235
Query: 180 AQLVELG 186
+++G
Sbjct: 236 VGCLQVG 242
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 133/258 (51%), Gaps = 12/258 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A LFE+M +R+VVSW +I++G+ +G EAI +F N+M L+
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF-NLMRRKGLL- 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +++S ++ G L +G +HG+I+R + TAL+D+Y C++ A
Sbjct: 221 ---VDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDA 277
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
RVF M +KDV W M++ +S A+ F++M + L+ + I + +L++C+
Sbjct: 278 HRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSH 337
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ ++ G + H++ K + V+D+ G L +AK F M E D
Sbjct: 338 SGALQQGRRV-HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWN 395
Query: 240 ALLGACKIHG----AVDL 253
A++ ++G A+DL
Sbjct: 396 AMIAGNGMNGYGTDAIDL 413
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+Q+H I+ + + + F+ +L++ Y G L A ++F K+V +W +IS LA N
Sbjct: 41 QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKN 100
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIME 204
EA+ +F EM + N +T +VL A A L+ + + + G FE +E
Sbjct: 101 DCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVE 160
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRR 260
+VD+ + G + A++ SM E + A++ HG A+DL + + R+
Sbjct: 161 --TALVDMYSKFGCMGVARQLFESMS-ERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRK 217
Query: 261 LLELQPKHCGRYVVLSNIHAGLE 283
L + Y ++S I A L
Sbjct: 218 GLLVD-----FYTIMSLIPASLS 235
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+M ++ +FENM RD+++W +II V + + + M V
Sbjct: 457 LVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM--RTEGVT 514
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT +S+L C+ L + GK++HG I + + V +G LI++Y K G L +
Sbjct: 515 PDMATMLSILPVCSLLAAKRQ---GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNS 571
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VFK M KDV TW A+IS+ K+A+ F EM+ G+ + + FVA++ AC+ +
Sbjct: 572 FQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHS 631
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL FH M +++ P +EHY CVVDLL R+ LL +A++F+ SMP +PD+S+ GA
Sbjct: 632 GLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGA 691
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G ++ V R++EL P G YV++SNI+A L +W++ +RK++ G+
Sbjct: 692 LLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGL 751
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 752 KKDPGCSWME 761
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 132/249 (53%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G++ ++ +F M +D VSW S+IN +++NG F EA+ +FK M +V +
Sbjct: 357 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDV---K 413
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYV +LS L G L+LGK++H + + ++ + L+D+Y K G + +
Sbjct: 414 PDSVTYVMLLSMSTQL---GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDS 470
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF++M +D+ TWN +I+S + L M M+ +G+ + T +++L C+
Sbjct: 471 LKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 530
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G E+ H + K + + ++++ + G L + + + M + D A
Sbjct: 531 AAKRQGKEI-HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTA 588
Query: 241 LLGACKIHG 249
L+ AC ++G
Sbjct: 589 LISACGMYG 597
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + D+D A +FE M RDVVSW S+I+G+ NG + EA+ ++ N+ +V
Sbjct: 156 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR-NLGVV- 213
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SVL +C GL G + G +HG I + I V + L+ +Y K L
Sbjct: 214 PDSYTMSSVLRACGGL---GSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F MV++D +WN MI + +E++ +F EM + + + +T ++L AC
Sbjct: 271 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 329
Query: 181 QLVELG 186
+E G
Sbjct: 330 GDLEFG 335
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M+ RD VSW ++I G+ + G + E+I +F M VN +P+ T S+L +C L
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM---VNQFKPDLLTITSILQACGHL 329
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L GK VH Y++ + LI++Y K G L + VF M KD +WN
Sbjct: 330 ---GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+MI+ N EA+ +F MK ++ + +T+V +L+ + + LG EL H L K
Sbjct: 387 SMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKEL-HCDLAK 444
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ +VD+ + G + ++ + +M
Sbjct: 445 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 477
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W SII NG F EA+ ++ + L +P+ T+ SV+++CAGL++ +
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQ-RIRL-QPDTYTFPSVINACAGLLD---FEM 133
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
K +H +L +++G ALID+Y + L++A +VF+ M ++DV +WN++IS +
Sbjct: 134 AKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EAL ++ + G+ + T +VL AC VE G ++ H ++ E
Sbjct: 194 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLI---------E 243
Query: 205 HYGCVVDLLGRAGLLSEAKEF 225
G D++ GLLS +F
Sbjct: 244 KIGIKKDVIVNNGLLSMYCKF 264
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G+M+ A +F+ ML+++V+SW+ +I+G+ + EA+ +F+ M+ ++
Sbjct: 245 MIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQML--CQGIK 302
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + V +S+C+ L G L G+ +H Y+ RN ++L + + TAL+D+Y K G + A
Sbjct: 303 PDRVSVVGAVSACSQL---GALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F SM ++V +WN MI L N KEAL F +M+ + + +++ F+ VL AC+ A
Sbjct: 360 RXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHA 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GL +F+ M G + + P +EHYGC+VDLLGRAG L + + ++SMP +P+A++ G+
Sbjct: 420 NLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGS 479
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V L V RL EL+ G YV++SNI+A + W +RK M E +
Sbjct: 480 LLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKM 539
Query: 301 RKIPAYSLIE 310
+K S+IE
Sbjct: 540 KKDIGRSVIE 549
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 44/230 (19%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G+M++A +F+ M +RDVVSW+ +I+G+ + VF + M +LV
Sbjct: 182 MLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVS 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++ID Y KVG +E A
Sbjct: 242 WN-------------------------------------------SMIDGYAKVGEMEVA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M+ K+V +W+ MI A + KEAL +F +M +G++ + ++ V ++AC++
Sbjct: 259 REIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQL 318
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G H + + ++ + +VD+ + G EA+ SMP
Sbjct: 319 GALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMP 367
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 41/220 (18%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY VL +C + GL G V G ++ VF+ LI +Y + G A VF
Sbjct: 112 TYPFVLKACGAMC---GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------------GLRANE----- 167
KD+ +WN+M+ + A MFDEM E+ G + E
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRAR 228
Query: 168 -----------ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
+++ +++ A+ +E+ E+F ML K + + ++D
Sbjct: 229 VFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVI-----SWSIMIDGYAXH 283
Query: 217 GLLSEAKEFMRSM---PFEPD-ASVLGALLGACKIHGAVD 252
EA R M +PD SV+GA + AC GA+D
Sbjct: 284 RDSKEALNLFRQMLCQGIKPDRVSVVGA-VSACSQLGALD 322
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 87 QVHGYILRNEIVLSVFMGTALID-LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
Q+H ++ ++ F + L+D + K + A VF + + N M+ +
Sbjct: 29 QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTAC-ARAQLVELGL 187
S + AL + EM++KGL + T+ VL AC A L+E GL
Sbjct: 89 STPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGL 131
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 190/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+ GY K GDM+ A ++F+ M ++VV+WT II G+ G EA + M+ +
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-- 310
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ + A +S+L++C G L LG ++H + R+ + + ++ AL+D+Y K G L+
Sbjct: 311 LKFDAAAVISILAAC---TESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A VF + KD+ +WN M+ L + KEA+ +F M+ +G+R +++TF+AVL +C
Sbjct: 368 KAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCN 427
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G++ F+SM +++VP +EHYGC+VDLLGR G L EA + +++MP EP+ +
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIW 487
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC++H VD+ EV L++L P G Y +LSNI+A E W D+R M
Sbjct: 488 GALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSM 547
Query: 299 GIRKIPAYSLIE 310
G+ K S +E
Sbjct: 548 GVEKPSGASSVE 559
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +F + + +V S+I +N +A VF M L N TY +L +C
Sbjct: 70 AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQ-RFGLFADN-FTYPFLLKAC 127
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--ERAIRVFKSMVIKD 131
+G + L + K +H +I + + +++ ALID Y + G L A+++F+ M +D
Sbjct: 128 SG---QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD 184
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
+WN+M+ L ++A +FDEM ++ L I++ +L AR + + ELF
Sbjct: 185 TVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----ISWNTMLDGYARCREMSKAFELFE 240
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
M + V + +V +AG + A+ MP
Sbjct: 241 KMPERNTV-----SWSTMVMGYSKAGDMEMARVMFDKMPL 275
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H I+R + + + LI A+RVF + +V N++I + A N
Sbjct: 36 KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
S+ +A +F EM+ GL A+ T+ +L AC+ + + +++ H+ + K + +
Sbjct: 96 SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPV-VKMMHNHIEKLGLSSDIYV 154
Query: 206 YGCVVDLLGRAGLLS--EAKEFMRSMPFEPDA----SVLGALLGACKIHGAVDLCHEVGR 259
++D R G L +A + M E D S+LG L+ A ++ A L E+ +
Sbjct: 155 PNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 260 RLL 262
R L
Sbjct: 214 RDL 216
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G M A +F +M K+DV+SW ++I G+ +N EA+ +F M +
Sbjct: 495 LTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES---K 551
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +L +CA L L G+++HGY LRN ++ A++D+Y K G L A
Sbjct: 552 PDGTTVACILPACASL---AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLA 608
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + EA+ F++M+ G+ +E++F+++L AC+ +
Sbjct: 609 RSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHS 668
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G ++F+ M + ++ P +EHY C+VDLL R G L +A +F+++MP +PDA++ GA
Sbjct: 669 GLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGA 728
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L +V R+ EL+P++ G YV+L+NI+A E+W LRK + + G+
Sbjct: 729 LLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGL 788
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 789 KKNPGCSWIE 798
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 122/232 (52%), Gaps = 11/232 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD++SAI +FE M ++ VVSWTS+I G+VR G AI +F M V
Sbjct: 394 LLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG--VV 451
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S+L++CA +N G L GK VH YI N + + F+ AL D+Y K G ++ A
Sbjct: 452 PDVYAVTSILNACA--IN-GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M KDV +WN MI NS EAL +F EM+ + + + T +L ACA
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASL 567
Query: 181 QLVELGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G E+ L G E + VVD+ + GLL A+ +P
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVT---NAVVDMYVKCGLLVLARSLFDMIP 616
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF+ + RDV+SW S+I+G+V+NG I +F M+ V V + AT V+V +CA
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKML--VFGVDIDLATMVNVFVACA-- 363
Query: 77 VNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
N G L LGK +H Y ++ + V L+D+Y K G L AIRVF+ M K V +W
Sbjct: 364 -NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSW 422
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+MI+ A+ +FDEMK +G+ + ++L ACA
Sbjct: 423 TSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACA 465
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 27/277 (9%)
Query: 1 MIDG---------YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKN 51
MIDG YVK GD+ ++F+ + + + W +I+ + +G +GE+I +FK
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241
Query: 52 M--MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
M +G ++PN T+ S+L A + + G+QVHG I + + +LI
Sbjct: 242 MLELG----IKPNSYTFSSILKCFAAVAR---VEEGRQVHGLICKLGFNSYNTVVNSLIS 294
Query: 110 LY---GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166
Y KV C A ++F + +DV +WN+MIS N + + +F +M G+ +
Sbjct: 295 FYFVGRKVRC---AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDID 351
Query: 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
T V V ACA + LG L + + + ++D+ + G L+ A
Sbjct: 352 LATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVF 411
Query: 227 RSMPFEPDASVLGALLGACK---IHGAVDLCHEVGRR 260
M + S + G + GA+ L E+ R
Sbjct: 412 ERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSR 448
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y S+L CA + G++V I + +++ +G L+ +Y K G L+ VF
Sbjct: 153 YCSILQLCA---ERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFD 209
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
+ + WN MIS + + E++ +F +M E G++ N TF ++L A VE
Sbjct: 210 KLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEE 269
Query: 186 GLELFHSMLGKF 197
G ++ H ++ K
Sbjct: 270 GRQV-HGLICKL 280
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +F M ++D V W +II +NG EAI +F+ M G L
Sbjct: 316 IMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQM-GREGLSY 374
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L L+ GK +H ++++ VF +ALID+YGK G L A
Sbjct: 375 -DCVSISAALSACANLP---ALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVA 430
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K+ +WN++I++ S+ + +L +F +M E G++ + +TF+ +L+AC A
Sbjct: 431 RCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHA 490
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G++ F M ++ + MEHY C+VDL GRAG L+EA E +++MPF PD V G
Sbjct: 491 GQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGT 550
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG V+L R LL+L P++ G YV+LSN+HA +W +R M + G+
Sbjct: 551 LLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGV 610
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 611 QKVPGYSWIE 620
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 134/263 (50%), Gaps = 13/263 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A+ LF M +VV+W +I GFV+NG EA +F M+ V P+
Sbjct: 118 YSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAG--VSPDSI 175
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S L S + L GK++HGYILR+ I L VF+ +ALID+Y K + A ++F
Sbjct: 176 TFASFLPS---VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIF 232
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K D+ A+IS N +AL +F + E+ + N +T +VL ACA +
Sbjct: 233 KQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLN 292
Query: 185 LGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
LG EL ++L + H G ++D+ + G L A + R MP E DA A++
Sbjct: 293 LGKELHANILK--HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIIT 349
Query: 244 ACKIHG----AVDLCHEVGRRLL 262
C +G A+DL ++GR L
Sbjct: 350 NCSQNGKPQEAIDLFRQMGREGL 372
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 156/288 (54%), Gaps = 18/288 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D+ A +F+ D+V T+II+G+V NG +A+ +F+ ++ +
Sbjct: 215 LIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEK--MS 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SVL +CAGL L LGK++H IL++ + +G+A++D+Y K G L+ A
Sbjct: 273 PNAVTLASVLPACAGLAT---LNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLA 329
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+ M KD WNA+I++ + N + +EA+ +F +M +GL + ++ A L+ACA
Sbjct: 330 YQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANL 389
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAK---EFMRSMPFEPDAS 236
+ G + M+ G F+ E ++D+ G+ G LS A+ + MR E +
Sbjct: 390 PALHHGKAIHSFMIKGAFDSEVFAE--SALIDMYGKCGNLSVARCVFDMMR----EKNEV 443
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAG 281
+++ A HG +++ + ++LE +QP H +LS HAG
Sbjct: 444 SWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAG 491
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 99/189 (52%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +NG ++ A LF+ M +D V W ++NGFV+ G A+ VF++M +
Sbjct: 13 LIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNC--QTK 70
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ SVLS CA +E G Q+HG ++ + AL+ +Y K G L A
Sbjct: 71 PNSITFASVLSICA---SEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDA 127
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F +M +V TWN MI+ N EA ++F EM G+ + ITF + L + +
Sbjct: 128 LKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTES 187
Query: 181 QLVELGLEL 189
++ G E+
Sbjct: 188 ASLKQGKEI 196
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
F+G++LI LY + GC+E A R+F M KD WN M++ A+ +F++M+
Sbjct: 8 FVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNC 67
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLGRAGLLS 220
+ N ITF +VL+ CA L E G +L ++ F P++ + +V + + G LS
Sbjct: 68 QTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMYSKFGQLS 125
Query: 221 EAKEFMRSMP 230
+A + +MP
Sbjct: 126 DALKLFNTMP 135
>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
Length = 462
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 186/311 (59%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG + A+ LF +M R++ +WT++I+G V G A+ +F M + VR
Sbjct: 29 LVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM--RRDGVR 86
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++A +S++ G + LG+Q+HG +R + ++ +G ALID+Y K + A
Sbjct: 87 IDDAFVLSIV--IGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSA 144
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV +W M+ A + R +EAL ++D M G + NE+TFV ++ AC+ A
Sbjct: 145 REVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 204
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF SM ++ + P ++HY C +DLL R+G L EA+E M +MP+EPD + GA
Sbjct: 205 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 264
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC + ++C + +LLEL+PK Y++LSN++A +W+ +RK M+ I
Sbjct: 265 LLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEI 324
Query: 301 RKIPAYSLIEA 311
RK P YS IEA
Sbjct: 325 RKEPGYSWIEA 335
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
+Y K G + +VF SM K+ W A++S ASN R +EAL +F M + L A
Sbjct: 1 MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTAL 60
Query: 170 FVAVLTACARAQLVELGLEL 189
++ VEL +E+
Sbjct: 61 ISGLVNTGESVGAVELFVEM 80
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TAL+ Y G E A+++F+SM +++ W A+IS L + A+ +F EM+ G+R
Sbjct: 27 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 86
Query: 165 ANEITFVAVLTACARAQLVE--LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
++ FV + A L LG +L S + + + M ++D+ + + A
Sbjct: 87 IDD-AFVLSIVIGGSADLAAFVLGRQLHGSTM-RLGFLSNMIVGNALIDMYSKCSDILSA 144
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHG 249
+E + F S ++G + HG
Sbjct: 145 REVFEGITFRDVISWTTMVVGEAQ-HG 170
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 184/331 (55%), Gaps = 32/331 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
MI GYV+NG + A LF+ M +R+V+SW ++I+GF +NG EA+ +FK M
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSW 356
Query: 53 -------------------MGNVNLV--RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
G + +V +PN T+ VL +CA L L G + H
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAAL---AVLEQGNEAHEV 413
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++R+ V +G L+ +Y K G +E A +VF M +D + +AMI A N KE+
Sbjct: 414 VIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKES 473
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
L +F++M+ GL+ + +TFV VL+AC A LV+ G + F M + + P MEHYGC++D
Sbjct: 474 LELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMID 533
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271
LLGRAG EA + + MP +PDA + G+LL AC+ H +DL +V + L+ L P++
Sbjct: 534 LLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAP 593
Query: 272 YVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
YV+LSNI+A RW+ +R M + ++K
Sbjct: 594 YVLLSNIYAAAGRWDDIGSVRNRMKDRKVKK 624
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 38/252 (15%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
YVK G + A +F+ M ++VVSWT++I + R+ EA+ F M +V ++PN
Sbjct: 110 YVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ-DVG-IQPNHF 167
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L +C L G + H I++ +VF+G L+D+Y K GC+E A +F
Sbjct: 168 TFASILPACTDLEVLG------EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF 221
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +WNAMI+ N ++AL +F E+ ++ + IT+ ++ A+ VE
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV----ITWNTMMAGYAQCGDVE 277
Query: 185 LGLELFHSMLGK---------------------FEVVPIMEH-----YGCVVDLLGRAGL 218
+ELF M + F++ IM + V+ + G
Sbjct: 278 NAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQ 337
Query: 219 LSEAKEFMRSMP 230
+ EA + ++MP
Sbjct: 338 VEEALKLFKTMP 349
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 118/235 (50%), Gaps = 17/235 (7%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ + G EA+ + ++M+ N + P+ +TY S+L C +N L K +H +
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENG--IWPHSSTYDSLLQGC---LNAKSLPDAKLLHAH 89
Query: 92 ILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
+++ + + +G L+ +Y K+G L A RVF M +K+V +W AMI++ A + +E
Sbjct: 90 MIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQE 149
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVPIMEHYGC 208
AL F EM++ G++ N TF ++L AC ++ L FH + G FE + +
Sbjct: 150 ALGFFYEMQDVGIQPNHFTFASILPACTDLEV----LGEFHDEIVKGGFESNVFVGN--G 203
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK---IHGAVDLCHEVGRR 260
+VD+ + G + A+E MP S + G + I A+ L E+ +R
Sbjct: 204 LVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR 258
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 39/311 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFK---------- 50
++D Y K G ++ A LF+ M +RDVVSW ++I G+V+NG +A+ +F+
Sbjct: 204 LVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITW 263
Query: 51 NMM-------GNVN-----LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV 98
N M G+V + E VS + AG V G + ++ I+ V
Sbjct: 264 NTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLF-QIMPERNV 322
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
+S A+I + + G +E A+++FK+M +V +WNAMI+ + N + + AL +F +M
Sbjct: 323 IS---WNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQM 379
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
+ ++ N TF VL ACA ++E G E H ++ + + +V + + G
Sbjct: 380 QMVDMKPNTETFAIVLPACAALAVLEQGNEA-HEVVIRSGFQSDVLVGNTLVGMYAKCGS 438
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE------LQPKHCGRY 272
+ +A++ M + AS+ ++G A++ C + L E L+P
Sbjct: 439 IEDARKVFDRMRQQDSASLSAMIVGY-----AINGCSKESLELFEQMQFTGLKPDRVTFV 493
Query: 273 VVLSN-IHAGL 282
VLS HAGL
Sbjct: 494 GVLSACCHAGL 504
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 188/307 (61%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A +F+ M +R+VV WTS+I+G+ + G F +A+ +F++M ++ V+ ++A
Sbjct: 275 YAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDM--QISGVKADDA 332
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +V+SSC + G L LG+ VH Y + + + + +LID+Y K G +++A +F
Sbjct: 333 TIATVVSSCGQM---GALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIF 389
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLV 183
+ +V +D +W MI A N EAL +F +M+E+G + NEITF+ VLT+C+ LV
Sbjct: 390 RGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLV 449
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E G FH M + + P +EHYGC+VDLLGRA LL+EA++F+ MP PD ++ +LL
Sbjct: 450 EQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLF 509
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ G V L V R+ EL+P CG V+LSN++A RW +R M + + K
Sbjct: 510 ACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKR 569
Query: 304 PAYSLIE 310
P S+IE
Sbjct: 570 PGCSVIE 576
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 114/244 (46%), Gaps = 14/244 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y++ G+++ A LFE M +R+ + ++ G+ G A VF+ G VN+V
Sbjct: 176 MIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVL 235
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQV-HGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ +G G + + V G R+ +V +G +Y K G +E
Sbjct: 236 --------CTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGV----MYAKCGLVED 283
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF +M ++V W +MIS + K+A+ +F +M+ G++A++ T V+++C +
Sbjct: 284 ARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQ 343
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LG H+ + + ++D+ + G + +A E R + D S
Sbjct: 344 MGALDLG-RYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTV 402
Query: 240 ALLG 243
++G
Sbjct: 403 MIMG 406
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD+ A +F ++KRD SWT +I GF NG GEA+ +F M V
Sbjct: 372 LIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEE-GEVM 430
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGK--QVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
PNE T++ VL+SC+ GLV +G + + +V+G R E ++DL G+
Sbjct: 431 PNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHY------GCMVDLLGRAKL 484
Query: 117 LERAIRVFKSMVI-KDVCTWNAMI 139
L A + + M I DV W +++
Sbjct: 485 LAEAEQFIEEMPIAPDVAIWRSLL 508
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103
+A+ ++ M VRP T SVL + A L G+QVH ++ +N +
Sbjct: 85 DAVALYAQMHRGCPGVRPLTFTVSSVLKAAA---RREMLREGEQVHVHVFKNGFQTDERI 141
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
T L+DLY + G L+ A RVF +++KD +N MI++ + A +F+ M E+
Sbjct: 142 ATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPER 199
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+M A +F+ + +DVV+W ++I G+ +NG EAI +F +M L P++
Sbjct: 264 YEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSMR-EAGLC-PDKI 321
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VLSSCA + G L LG ++ Y +R + +V++GTAL+D+Y K G LE+A VF
Sbjct: 322 TLVGVLSSCAAV---GALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVF 378
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
M K+ +WNA+I LA N R +A+ F+ M+ EKGL+ ++ITF+ VL+AC A L+
Sbjct: 379 GKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLL 438
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E G +LF+S+ F+++P +EHY C+VDLL RAG L EA +F+ MP + DA +LGALL
Sbjct: 439 EYGRQLFNSLTPVFKIIPRIEHYSCIVDLLARAGHLEEAWDFIEEMPGKVDAVMLGALLA 498
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ ++ V R+++L+P + YVV S I+A ++ + + + M E G+ K
Sbjct: 499 ACRKCKNTEVGERVINRIMKLEPSNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKT 558
Query: 304 PAYSLIE 310
P S +E
Sbjct: 559 PGCSWVE 565
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 150/306 (49%), Gaps = 14/306 (4%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D +A +F+ + RDVVSW S++ + R G E + ++M+ V PN T V
Sbjct: 167 DHLAARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTE-GAVAPNGVTLAVV 225
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L++C + G L LG+ V ++ + + +G+AL+ +Y K G + A RVF +
Sbjct: 226 LTACR---DAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRH 282
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV WNAMI+ A N EA+ +F M+E GL ++IT V VL++CA ++LG+EL
Sbjct: 283 KDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVEL 342
Query: 190 --FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ G + V + +VD+ + G L +A MPF+ +AS AL+
Sbjct: 343 DTYAMRRGLYNNVYVGT---ALVDMYAKCGDLEKATHVFGKMPFKNEAS-WNALICGLAF 398
Query: 248 HG-AVDLCH--EVGRRLLELQPKHCGRYVVLSN-IHAGLERWNRATDLRKAMVEAGIRKI 303
+G D E+ R LQP VLS +HAGL + R V I +I
Sbjct: 399 NGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRI 458
Query: 304 PAYSLI 309
YS I
Sbjct: 459 EHYSCI 464
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 184/302 (60%), Gaps = 5/302 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + SA +FE M RD V+W S+INGF NG EA+ +++ M V P+ T VS
Sbjct: 185 GSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM--GSEGVEPDGFTMVS 242
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+LS+C L G L LG++VH Y+++ +V + AL+DLY K G A +VF M
Sbjct: 243 LLSACVEL---GALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEME 299
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+ V +W ++I LA N EAL +F E++ +GL+ +EITFV VL AC+ +++ G
Sbjct: 300 ERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN 359
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
F M ++ ++P +EH+GC+VDLL RAG + +A +++R+MP P+A + LLGAC IH
Sbjct: 360 YFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIH 419
Query: 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308
G ++L + L+ +H G +V+LSN++A RW ++RK M+ G++K P YSL
Sbjct: 420 GHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSL 479
Query: 309 IE 310
+E
Sbjct: 480 VE 481
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+ M A +F + ++ +W ++I GF + A+ +F M +++ P+ T+
Sbjct: 82 SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL-PDTHTFP 140
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+ + A L++ + LG+ +H ++RN F+ +L+ +Y +G L A +VF+ M
Sbjct: 141 FLFKAVAKLMD---VSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIM 197
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+D WN++I+ A N EAL ++ EM +G+ + T V++L+AC + LG
Sbjct: 198 SYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG- 256
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E H + K +V ++DL + G +A++ M
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298
>gi|255580953|ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529128|gb|EEF31108.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 313
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 180/306 (58%), Gaps = 18/306 (5%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGE-----AICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
M KR VV+W ++I GF + A+ +F++M+ +V +PN+ T VSVLS+ +
Sbjct: 1 MSKRSVVTWNAMITGFSSQREKAKDSAVAALMLFRDMVVDVCAEKPNDITMVSVLSASSQ 60
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L G L G +HGYI + V +F+GT L+D+Y K GCL+ A++ F M +K+
Sbjct: 61 L---GVLECGACIHGYIEKTICVPQNDIFIGTGLVDMYSKCGCLDSAVKFFVEMKLKNKL 117
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
TW AM + LA + + KE L + D M G++ N +TF ++ +AC + LVE GL LFH+M
Sbjct: 118 TWTAMATGLAIHGKGKETLELLDGMGASGIKPNAVTFTSLFSACCHSGLVEEGLHLFHNM 177
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
GKF + P ++HYGC+VDLLG+ G L EA EF+ MP EPDA + LL ACK+HG V +
Sbjct: 178 KGKFGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDAILWRCLLSACKVHGDVVM 237
Query: 254 CHEVGRRLLELQPKH--------CGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305
+V + LL LQP+ YV LSN++A ERW LRK M + P
Sbjct: 238 GEKVAKILLHLQPEKNSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVKRLETKPG 297
Query: 306 YSLIEA 311
SL++A
Sbjct: 298 ASLVQA 303
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +DSA+ F M ++ ++WT++ G +G E + + M + ++
Sbjct: 91 LVDMYSKCGCLDSAVKFFVEMKLKNKLTWTAMATGLAIHGKGKETLELLDGM--GASGIK 148
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+ S+ S+C +GLV E GL+L + G + I + ++DL GK G L+
Sbjct: 149 PNAVTFTSLFSACCHSGLVEE-GLHLFHNMKG---KFGIEPGIQHYGCIVDLLGKGGHLK 204
Query: 119 RAIRVFKSMVIK-DVCTWNAMISS 141
A M ++ D W ++S+
Sbjct: 205 EAYEFIAGMPMEPDAILWRCLLSA 228
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y+K GD+DS +F+ M+ D+V W SII GF ++G A+ +F M + L
Sbjct: 212 LIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLA- 270
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T SVL +C G+V L +G+QVH ++L+ + + + AL+D+Y K GCL A
Sbjct: 271 -NQGTLTSVLRACTGMVM---LEVGRQVHAHVLKYD--RDLILHNALLDMYCKCGCLLDA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +W+ MIS LA N R EAL +FD MK +G N IT V VL AC+ A
Sbjct: 325 DALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHA 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM F + P EH C+VDLLGRAG L EA +F+ M FEPD+ +
Sbjct: 385 GLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRT 444
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H L +L+L+P+ G ++LSNI+A L +W+ A K M + G+
Sbjct: 445 LLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGV 504
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 505 KKEPGRSWIE 514
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVR-NGCFGEAICVFKNMMGNVNLV 59
++ Y K G +D A+ LF M +R+VVSWT+++ G EA+ M + V
Sbjct: 113 LVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEM--RRDGV 170
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
N T+ SVL +C G + +H I++ + VF+ ++LID Y K+G L+
Sbjct: 171 AANSYTFSSVLGAC------GTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDS 224
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF MV D+ WN++I+ A + A+ +F MKE G AN+ T +VL AC
Sbjct: 225 GRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTG 284
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++E+G ++ H+ + K++ I+ + ++D+ + G L +A M
Sbjct: 285 MVMLEVGRQV-HAHVLKYDRDLIL--HNALLDMYCKCGCLLDADALFSRM 331
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHG 90
SI + +G F A+ + ++ VR + + ++ C V G + G+ +H
Sbjct: 36 SIFSRLCLDGPFTAALALLPDIAAAG--VRADPVSLCRLIKLC---VRHGTVGDGRAIHR 90
Query: 91 YI------LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA- 143
++ S+F+ +L+ +Y K G L+ A+ +F M ++V +W ++++LA
Sbjct: 91 HVSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALAN 150
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACA--------RAQLVELGLE 188
+ R+KEAL EM+ G+ AN TF +VL AC A ++++GL+
Sbjct: 151 APGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLD 203
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y ++ + +F+ M R+V SWT++ING+V NG EA+ +F++M ++ V
Sbjct: 274 LIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQV-IDGVE 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + VSVL +C+ GL G+Q+HG+ +R E+ V + ALID+Y K G L+ A
Sbjct: 333 PNRVSLVSVLPACSSF---SGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSA 389
Query: 121 IRVFKS-MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF+ + KD +W++MIS + + +EA++++D+M + G+R + IT V +L+AC R
Sbjct: 390 RRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGR 449
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV GL ++ S++ + + P +E C+VD+LGRAG L A +F++++P EP SV G
Sbjct: 450 SGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWG 509
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
AL+ IHG +++ R L++L+PK+ YV +SN++A RW+ ++R+ M +
Sbjct: 510 ALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKR 569
Query: 300 IRKIPAYSLIE 310
+RK+P S I
Sbjct: 570 LRKVPGCSWIS 580
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 11/252 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG-C-FGEAICVFKNMMGNVNLVRPN 62
Y K G+ D + +F+ M R+ SW +I G+ +G C F E F M ++ VRP+
Sbjct: 169 YCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQM-QMDEVRPD 227
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL----SVFMGTALIDLYGKVGCLE 118
T S+L C G + G G+++H YI++NE+VL V +G LID+Y + +
Sbjct: 228 AYTISSLLPLCDG--DMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVV 285
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTAC 177
RVF M ++V +W AMI+ N EAL +F +M+ G+ N ++ V+VL AC
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPAC 345
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + G ++ H + E+ + ++D+ + G L A+ DA
Sbjct: 346 SSFSGLLSGRQI-HGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAIS 404
Query: 238 LGALLGACKIHG 249
+++ +HG
Sbjct: 405 WSSMISGYGLHG 416
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 18/212 (8%)
Query: 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
L+F+++ ++V W S+ING V+N + EA +F M + V P++ T LS+ +
Sbjct: 79 LVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSD--VLPDDFT----LSTLSK 132
Query: 76 LVNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
+ +E G L+ GK +HG +R V + +++ +Y K G + + +VF M I++ +
Sbjct: 133 VSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGS 192
Query: 135 WNAMISSLA----SNSREKEALVMFDEMKEKGLRANEITFVAVLTAC-ARAQLVELGLEL 189
WN +I+ A N RE E +M+ +R + T ++L C + G EL
Sbjct: 193 WNVLIAGYAVSGNCNFRE-ETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGREL 251
Query: 190 FHSMLGKFEVVPIME---HYG-CVVDLLGRAG 217
H + K E+V ++ H G C++D+ R+
Sbjct: 252 -HCYIVKNELVLGLDSDVHLGCCLIDMYSRSN 282
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+M ++ +FENM RD+++W +II V + + + M V
Sbjct: 516 LVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM--RTEGVT 573
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT +S+L C+ L + GK++HG I + + V +G LI++Y K G L +
Sbjct: 574 PDMATMLSILPVCSLLAAKRQ---GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNS 630
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VFK M KDV TW A+IS+ K+A+ F EM+ G+ + + FVA++ AC+ +
Sbjct: 631 FQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHS 690
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL FH M +++ P +EHY CVVDLL R+ LL +A++F+ SMP +PD+S+ GA
Sbjct: 691 GLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGA 750
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G ++ V R++EL P G YV++SN++A L +W++ +RK++ G+
Sbjct: 751 LLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGL 810
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 811 KKDPGCSWME 820
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 131/249 (52%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G++ ++ +F M +D VSW S+IN +++NG F EA+ +FK M +V +
Sbjct: 416 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDV---K 472
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYV +LS L G L LGK++H + + ++ + L+D+Y K G + +
Sbjct: 473 PDSVTYVMLLSMSTQL---GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDS 529
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF++M +D+ TWN +I+S + L M M+ +G+ + T +++L C+
Sbjct: 530 LKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 589
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G E+ H + K + + ++++ + G L + + + M + D A
Sbjct: 590 AAKRQGKEI-HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTA 647
Query: 241 LLGACKIHG 249
L+ AC ++G
Sbjct: 648 LISACGMYG 656
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + D+D A +FE M RDVVSW S+I+G+ NG + EA+ ++ N+ +V
Sbjct: 215 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR-NLGVV- 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SVL +C GL G + G +HG I + I V + L+ +Y K L
Sbjct: 273 PDSYTMSSVLRACGGL---GSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 329
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F MV++D +WN MI + +E++ +F EM + + + +T ++L AC
Sbjct: 330 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHL 388
Query: 181 QLVELG 186
+E G
Sbjct: 389 GDLEFG 394
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M+ RD VSW ++I G+ + G + E+I +F M VN +P+ T S+L +C L
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM---VNQFKPDLLTITSILQACGHL 388
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G L GK VH Y++ + LI++Y K G L + VF M KD +WN
Sbjct: 389 ---GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
+MI+ N EA+ +F MK ++ + +T+V +L+ + + LG EL H L K
Sbjct: 446 SMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKEL-HCDLAK 503
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ +VD+ + G + ++ + +M
Sbjct: 504 MGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM 536
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W SII NG F EA+ ++ + L +P+ T+ SV+++CAGL++ +
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQ-RIRL-QPDTYTFPSVINACAGLLD---FEM 192
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
K +H +L +++G ALID+Y + L++A +VF+ M ++DV +WN++IS +
Sbjct: 193 AKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 252
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N EAL ++ + G+ + T +VL AC VE G ++ H ++ E
Sbjct: 253 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLI---------E 302
Query: 205 HYGCVVDLLGRAGLLSEAKEF 225
G D++ GLLS +F
Sbjct: 303 KIGIKKDVIVNNGLLSMYCKF 323
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 190/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K ++ A F ++ ++D++SW + I+ +A+ FK M+ N VR
Sbjct: 243 IITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEML-NECRVR 301
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T+ S L++C+GL + + GKQ+HG+++R + V G ALI++Y K GC+ +A
Sbjct: 302 PDEFTFASALAACSGLAS---MCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKA 358
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +++ +WN MI+ ++ +A +F +MK G++ + +TFV +LTA A
Sbjct: 359 YYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHA 418
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL F+SM + + P +EH+ C++DLLGRAG L+EAKE+M+ PF D VLG+
Sbjct: 419 GLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGS 478
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG VD R+LL+LQP YV+LSN++A E W+ + K + +G+
Sbjct: 479 LLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGL 538
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 539 KKEPGHSLIE 548
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 10/241 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A +F+ M +R++VSW+++I+G+ + GE I + +N+V PNE
Sbjct: 48 YAKCRKLREARQVFDEMSERNLVSWSAMISGYEQ---IGEPISAL-GLFSKLNIV-PNEY 102
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
Y SV+S+CA L GL GKQ+HG L+ + F+ ALI +Y K G A+ +
Sbjct: 103 VYASVISACASL---KGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAY 159
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +NA+I+ N + + + M + G + TFV +L C ++
Sbjct: 160 NEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLK 219
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G EL H K ++ ++ + + LL EA++ RS+ E D + +
Sbjct: 220 RG-ELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIE-EKDLISWNTFISS 277
Query: 245 C 245
C
Sbjct: 278 C 278
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 6/179 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y+K G A+L + L+ + V++ ++I GFV N + V + M +
Sbjct: 142 LITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFF-- 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+V +L +C + L G+ +H ++ ++ + F+G +I +Y K+ LE A
Sbjct: 200 PDRFTFVGLLGTCN---SRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACA 178
+ F+S+ KD+ +WN ISS + + ++AL F EM E +R +E TF + L AC+
Sbjct: 257 EKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
L G +H ++ V + +++LY K L A +VF M +++ +W+AMIS
Sbjct: 18 ALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMIS 77
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
AL +F ++ + NE + +V++ACA
Sbjct: 78 GYEQIGEPISALGLFSKLN---IVPNEYVYASVISACA 112
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + D+DSA +F+ +++ VV + ++I G+ R EA+ +F+ M G ++
Sbjct: 170 LINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK--YLK 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLSSCA L G L LGK +H Y ++ V + TALID++ K G L+ A
Sbjct: 228 PNEITLLSVLSSCALL---GSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M KD W+AMI + A++ + +++++MF+ M+ + ++ +EITF+ +L AC+
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G + F M+ KF +VP ++HYG +VDLL AG L +A EF+ +P P +
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRI 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC H +DL +V R+ EL H G YV+LSN++A ++W LRK M +
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 465 VKVPGCSSIE 474
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 7/244 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
M A LFE M + D+V + S+ G+ R E +F ++ + L P+ T+ S
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGIL--PDNYTFPS 134
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +CA L G+Q+H ++ + +V++ LI++Y + ++ A VF +V
Sbjct: 135 LLKACAV---AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIV 191
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
V +NAMI+ A +R EAL +F EM+ K L+ NEIT ++VL++CA ++LG +
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-K 250
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
H K ++ ++D+ + G L +A M ++ D A++ A H
Sbjct: 251 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANH 309
Query: 249 GAVD 252
G +
Sbjct: 310 GKAE 313
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++NG + +A +F+ M D VSWT++I+G V+NG EAI F +M+ + V
Sbjct: 143 MITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDG--VE 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+ +S+CA + G L LG VH +++ + +V + +LID+Y + G ++ A
Sbjct: 201 PDYVTLVAAISACAEV---GALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFA 257
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + + V +WN+MI A+N + +A+ F+ M+ +G + + +TF VLTAC+ A
Sbjct: 258 RQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHA 317
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL + +M + + MEHYGCVVDLLGRAG L EA + SMP P+ VLGA
Sbjct: 318 GLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGA 377
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG VDL ++ + LLE P YV+LSNI+A + +W A +R M G+
Sbjct: 378 LLAGCRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGKWGGAGKVRSLMKSRGV 437
Query: 301 RKIPAYSLIE 310
+K P S +E
Sbjct: 438 KKRPGQSTVE 447
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS 72
SA + RDVVSWTS I R G A M+ + PN+ T ++VLS+
Sbjct: 18 SATSKPRRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSA 77
Query: 73 CAGLVNEG-GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
CAG + L +H ++ ++ + T L Y AI++F SM +
Sbjct: 78 CAGDSSSALARPLALSLHALAVK-LFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRS 136
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
V T+N MI+ L N A +FDEM +++++ A++ C + + ++ FH
Sbjct: 137 VVTYNTMITGLMRNGLVAAAREVFDEMPAP----DKVSWTALIDGCVKNGRHDEAIDCFH 192
Query: 192 SML 194
SML
Sbjct: 193 SML 195
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 188/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G + GDMD A+ LF +M R+VV WT++I+G+ N + +A+ +F M ++
Sbjct: 119 MMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIM- 177
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VS+L +CA L L +G++V Y +N + + A++++Y K G ++ A
Sbjct: 178 PNAVTLVSILPACANLX---ALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAA 234
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF + ++++C+WN+M+ LA + +AL ++D+M +G +++TFV +L AC +
Sbjct: 235 WRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQ 294
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V+ G +F S F ++P +EHYGC+VDLLGRAG L EA E ++SM +PD+ + G
Sbjct: 295 GGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWG 354
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG V+L L L+P + G YV+LSNI+A +W+ LRK M +
Sbjct: 355 ALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSK 414
Query: 300 IRKIPAYSLIE 310
I K +S IE
Sbjct: 415 ITKSAGHSFIE 425
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 35/158 (22%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+ + S+C L + LG+ +H + +++ +F TAL+D+Y KVG LE A
Sbjct: 45 PNQHTFNFLFSACTSLSS---SSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELA 101
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM---------------------- 158
++F M ++ V WNAM++ LA AL +F M
Sbjct: 102 RKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYD 161
Query: 159 ----------KEKGLRANEITFVAVLTACARAQLVELG 186
+EKG+ N +T V++L ACA +E+G
Sbjct: 162 KALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIG 199
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++ SA +F+ M ++VVSWT+++ G+ +NG EA+ F +M +
Sbjct: 316 LVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYG--IE 373
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q H L + ++ + + AL+ LYGK G +E +
Sbjct: 374 PDDFTLGSVISSCANLAS---LEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDS 430
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + KD TW A++S A + E + +F+ M GL+ +++TF+ VL+AC+RA
Sbjct: 431 HRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRA 490
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F SM+ + +VPI +HY C++DL RAG + EA+ F+ MPF PDA
Sbjct: 491 GLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWAT 550
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ +G +D+ L+EL P + YV+LS+++A +W LRK M + G+
Sbjct: 551 LLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGL 610
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 611 RKEPGCSWIK 620
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 138/250 (55%), Gaps = 6/250 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G ++ G ++ + LF M +RD +SWTS+I GF +NG +AI +F+ M + ++
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM--KLENLQ 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ SVL++C G++ L GKQVH YI+R + ++F+ +AL+D+Y K ++ A
Sbjct: 273 MDQYTFGSVLTACGGVM---ALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSA 329
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M K+V +W AM+ N +EA+ F +M++ G+ ++ T +V+++CA
Sbjct: 330 EAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANL 389
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + FH+ ++ + +V L G+ G + ++ + F+ + +
Sbjct: 390 ASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTAL 448
Query: 241 LLGACKIHGA 250
+ G + A
Sbjct: 449 VSGYAQFGKA 458
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G + LF+ M +RD VSW S+I+G+ G +++ + M+ N
Sbjct: 81 ILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFN 140
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--- 117
N T+ ++L + G + LG+Q+HG++++ + VF+G+ L+D+Y K+G +
Sbjct: 141 LNRITFSTLLILAS---KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCA 197
Query: 118 ----------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
E + R+F M +D +W +MI+ N ++
Sbjct: 198 RKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDR 257
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+A+ +F EMK + L+ ++ TF +VLTAC ++ G ++
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
K +H +I++ F+ LI Y K+G + A +VF M ++ +WN ++S+ +
Sbjct: 28 AKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSK 87
Query: 145 NSREKEALVMFDEMKEK---------------------------------GLRANEITFV 171
R E +FD M + N ITF
Sbjct: 88 LGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFS 147
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+L ++ V+LG ++ H + KF + + +VD+ + G++S A++ +P
Sbjct: 148 TLLILASKRGCVKLGRQI-HGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP 205
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 190/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G M A +F +M + VVSWT++++G+ G F A+ F+ M +
Sbjct: 190 VISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLM--QMEGFE 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ + V+VL +CA L G L LG+ ++ Y R++++ ++ AL+++Y K GC+++A
Sbjct: 248 PDDVSIVAVLPACAQL---GALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQA 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+++F M KDV +W+ M+ LA++ R +EA+ +F EM+ +G ++ N ITFV +L+AC+
Sbjct: 305 LQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSH 364
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L++ GL+ F M + + P +EHYGC+VDLL R+G + + + MP DA + G
Sbjct: 365 AGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWG 424
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++L AC+ HG VD RL+ L+P+ G V+L+N++A RW+ + RKA+
Sbjct: 425 SVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRS 484
Query: 300 IRKIPAYSLIE 310
+RK P SLIE
Sbjct: 485 MRKTPGCSLIE 495
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 126/302 (41%), Gaps = 80/302 (26%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y +N AI ++ ML+R W S G
Sbjct: 82 MIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGG------------------------- 116
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ TY +L +C GL+ L LGKQVHG+++R+ + + +LI++Y + G L A
Sbjct: 117 -DRFTYPFLLKACGGLM---ALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLA 172
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------------------- 161
+VF M +DV +WN +IS+ A + ++A +F+ M +K
Sbjct: 173 RKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFS 232
Query: 162 ------------GLRANEITFVAVLTACARAQLVELGLELF-----HSMLGKFEVVPIME 204
G ++++ VAVL ACA+ +ELG ++ H ML E
Sbjct: 233 GAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQML--------RE 284
Query: 205 HYGC--VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVG 258
Y C +V++ + G + +A + M E D ++G HG AV L E+
Sbjct: 285 TYVCNALVEMYAKCGCIDQALQLFNGMA-EKDVISWSTMVGGLAAHGRAQEAVQLFTEME 343
Query: 259 RR 260
R+
Sbjct: 344 RQ 345
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VH + +R + S ++ T ++ L G + A RVF + ++ NAMI + A N
Sbjct: 31 RVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNH 90
Query: 147 REKEALVMFDEMKEKG-------LRANEITFVAVLTACARAQLVELGLELF-HSMLGKFE 198
R +A+ ++ M + + T+ +L AC ++LG ++ H + E
Sbjct: 91 RHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCE 150
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
I+++ ++++ RAG L A++ M
Sbjct: 151 SNAIVQN--SLIEMYTRAGDLVLARKVFDGM 179
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 192/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A +F++++ +DVV+W ++I G+ +NG EAI +F NM V P++
Sbjct: 275 YEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNM--KKAGVCPDKI 332
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VLS+C+ + G L LG ++ GY + +V++GTAL+D+Y K G L++AI VF
Sbjct: 333 TLAGVLSACSAV---GALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVF 389
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ M K+V +WNA+I LA N + EA+ F+ M+ E GL+ ++ITF+ VL+AC A LV
Sbjct: 390 RKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLV 449
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VDLL R+G L E +F+ +P + DA +LGALL
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLA 509
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A R + + +R M E G+ K
Sbjct: 510 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKT 569
Query: 304 PAYSLIE 310
P S +E
Sbjct: 570 PGCSWVE 576
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 18/286 (6%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D +A +F + RDVVSW +++ + R G GE + ++M+ + +V PN T V
Sbjct: 178 DPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVV-PNAVTLAVV 236
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L++C +EG L LG+ V + + +G+AL+ +Y K G + A RVF S++
Sbjct: 237 LAACR---DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIID 293
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV WNAMI+ A N EA+ +F MK+ G+ ++IT VL+AC+ +ELG EL
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL 353
Query: 190 --FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ S G + V + +VD+ + G L +A E R M + AS AL+
Sbjct: 354 DGYASCRGLYNNVYVGT---ALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNALICGLAF 409
Query: 248 HGAVD--LCH-EVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
+G D + H E+ R L+P VLS +HAGL +RW
Sbjct: 410 NGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRW 455
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 186/315 (59%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+DSA L F+ ++D W ++I+G+V+N CF E + +F+ + + V
Sbjct: 177 MISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLL--QLTHVV 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+ +VS+LS+CA L G L +G +H Y+ R + LS+ + T+L+D+Y K G LE A
Sbjct: 235 PDESIFVSILSACAHL---GALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELA 291
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F SM +D+ WNAMIS LA + AL MF EM++ G++ ++ITF+AV TAC+ +
Sbjct: 292 KRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYS 351
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR---SMPFEPDASV 237
+ GL+L M +E+ P EHYGC+VDLL RAGL EA +R S +
Sbjct: 352 GMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEET 411
Query: 238 LG--ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
L A L AC HG L +RLL L+ H G YV+LSN++A + + A +R M
Sbjct: 412 LAWRAFLSACCNHGQAQLAERAAKRLLRLE-NHSGVYVLLSNLYAASGKHSDARRVRNMM 470
Query: 296 VEAGIRKIPAYSLIE 310
G+ K P S +E
Sbjct: 471 RNKGVDKAPGCSSVE 485
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 38/273 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
G + A +FE + + +II F+ NG F VF M+ N + P+ T
Sbjct: 52 QGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNG--LGPDNYTIP 109
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL----------------- 110
VL +CA L + LGK VHGY + +V +F+G +L+ +
Sbjct: 110 YVLKACAALRD---CSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEM 166
Query: 111 --------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
Y KVG ++ A F KD W AMIS NS KE L +F
Sbjct: 167 PRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFR 226
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
++ + +E FV++L+ACA +++G+ + H L + V + ++D+ +
Sbjct: 227 LLQLTHVVPDESIFVSILSACAHLGALDIGIWI-HRYLNRKTVSLSIRLSTSLLDMYAKC 285
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G L AK SMP E D A++ +HG
Sbjct: 286 GNLELAKRLFDSMP-ERDIVCWNAMISGLAMHG 317
>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1002
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 194/314 (61%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G+ +NG + A +F M + ++++WT++I+G +NG EA VF+ M G
Sbjct: 524 LIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAG 583
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+RPN + S LS+C N L G+ +HGY++RN + S+ + T++ID+Y K G
Sbjct: 584 --MRPNSISITSALSAC---TNMALLNYGRSIHGYVMRNFMSFSLQITTSIIDMYAKCGN 638
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+ A VF K++ +NAMIS+ AS+ + EAL +F E+ ++G+ + ITF +VL+A
Sbjct: 639 LDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVKQGIMPDHITFTSVLSA 698
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +L++ GLELF M+ + ++ P +HYGC+V LL G L EA + +MP PDA
Sbjct: 699 CSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALRIILTMPSPPDAH 758
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LG+LL AC + +L + + + LL+++P + G YV LSN++A L +W+ +++R M
Sbjct: 759 ILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALSNVYAALGKWDEVSNIRGFMK 818
Query: 297 EAGIRKIPAYSLIE 310
E G++KIP S IE
Sbjct: 819 EKGLKKIPGCSWIE 832
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 13/255 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++D Y K G ++ A +F+ M KR+ V W S+I G+V+NG EA+ +F+ M
Sbjct: 250 LVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGG- 308
Query: 59 VRPNEATYVSVLSSCAGL--VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V P+E + S+CA L V EG KQ H ++ L+ +G+++++ Y KVG
Sbjct: 309 VEPSEVSLSGFFSACANLEAVEEG-----KQGHALVILMGFELNYVLGSSIMNFYSKVGL 363
Query: 117 LERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVL 174
+E VF+SM V+KD TWN MISS ++AL M M+ E+ LR + +T ++L
Sbjct: 364 IEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLL 423
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
A + V+LG +L H + E M V+D+ + G++ A+ + D
Sbjct: 424 ALAADTRDVKLGKKL-HGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKD 482
Query: 235 ASVLGALLGACKIHG 249
+ +L AC G
Sbjct: 483 IVLWNTMLAACAEKG 497
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 28/258 (10%)
Query: 14 AILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGN----VNLVRPNEATYVS 68
A+ F N++K +++ S+ +I+ RNG + EA+ + MM N V PN
Sbjct: 159 AVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNG----- 213
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
L +C GL G G+ +HG++++ NE V++ T+L+D+YGK G LE A +VF
Sbjct: 214 -LKACGGLRWIG---FGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDE 269
Query: 127 MV--IKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
M ++ WN+MI N EA+ +F++M+ E G+ +E++ +ACA + V
Sbjct: 270 MPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAV 329
Query: 184 ELGLELFHSM--LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
E G + H++ L FE+ ++ +++ + GL+ E + RSM D +
Sbjct: 330 EEGKQ-GHALVILMGFELNYVLG--SSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLM 386
Query: 242 LGACKIHG----AVDLCH 255
+ + G A+++CH
Sbjct: 387 ISSYVQFGMFEKALEMCH 404
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 41/232 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+++ Y K G ++ L+F +M + +D V+W +I+ +V+ G F +A+ + M NL
Sbjct: 354 IMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENL- 412
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG---- 115
R + T S+L+ A + + LGK++HG+ +RNE + + + ++D+Y K G
Sbjct: 413 RFDCVTLSSLLALAA---DTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDC 469
Query: 116 -----------------------CLER-----AIRVFKSM----VIKDVCTWNAMISSLA 143
C E+ A+++F M V +V +WN++I
Sbjct: 470 ARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFF 529
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N + EA MF EM+ G+ N IT+ +++ A+ L +F M G
Sbjct: 530 RNGQVVEAQDMFSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQG 581
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY ++G MD A LFE M +R+V+SW+ +I+G V G EA+ F++M+ +R
Sbjct: 251 MIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCG--LR 308
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +S+CA L G L G+ +H Y+ + +++ V + TALID+Y K GCL+ A
Sbjct: 309 PDRIAAVGAVSACAQL---GALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+SM + V TWN MI L ++ +A+ +F M+ + + ++++ + +LTAC A
Sbjct: 366 MLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHA 425
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLE+FH M F + P +EHYG +VDLLGRAG L +A+ + +MP EP + G+
Sbjct: 426 GLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGS 485
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L RL +L G YV+LSNI+A W +RK M + G+
Sbjct: 486 LLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGM 545
Query: 301 RKIPAYSLIE 310
RK S+IE
Sbjct: 546 RKDIGRSVIE 555
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I Y + D+ S +F+ + RD+VSW S++ G+V G G A +F M
Sbjct: 154 LISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEM------ 207
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + T+ S + G +GG + + + E L + ++ID Y + G ++
Sbjct: 208 --PQKDTF-SWATLIDGYGKQGGAGVDRARELFDQMPERDLVCW--NSMIDGYARHGRMD 262
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F+ M ++V +W+ +I S KEAL F M GLR + I V ++ACA
Sbjct: 263 EARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACA 322
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ +E G HS L K +++ + ++D+ + G L A SM
Sbjct: 323 QLGALEQG-RWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESM 372
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VRP+ T+ +VL +C G G VH +R + +F ALI Y ++ +
Sbjct: 109 VRPDAYTFPAVLKACG---CAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIR 165
Query: 119 RAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+VF V +D+ +WN+M++ A MFDEM +K + ++ ++
Sbjct: 166 SGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQK----DTFSWATLIDG 221
Query: 177 CAR--AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ ELF M + V + ++D R G + EA+ MP
Sbjct: 222 YGKQGGAGVDRARELFDQMPERDLVC-----WNSMIDGYARHGRMDEARSLFEEMP 272
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K GD++ LF M R VVSW S+I G ++G GEA+ +F+ M +
Sbjct: 179 MIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHG--FE 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
P++AT V++L CA L G + +G+ +H Y + ++ + +G +L+D Y K G LE
Sbjct: 237 PDDATVVTILPVCARL---GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILET 293
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF M K+V +WNAMIS L N + + +F+EM KG+R N+ TFV VL+ CA
Sbjct: 294 AWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAH 353
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G LF SM ++ P +EH+GC+VDLL R G + EA++ +R+MP P+A + G
Sbjct: 354 AGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWG 413
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL A + G V + L+EL+P + G YV+LSN++A +W+ +R M E
Sbjct: 414 SLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKN 473
Query: 300 IRKIPAYSLI 309
IRK P S++
Sbjct: 474 IRKNPGQSMV 483
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 44/308 (14%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A L+F +++ + S+I G+ G ++ +F M + P+E T+ +L
Sbjct: 57 MGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRG--IWPDEFTFAPLL 114
Query: 71 SSCAGLVNE--------------------------------GGLYLGKQVHGYILRNEIV 98
SC+G+ + G + K+V +L +++
Sbjct: 115 KSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVI 174
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
+ M I + KVG +E R+F+ M + V +WN+MI+ L + R+ EAL +F EM
Sbjct: 175 VWNMM----IRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREM 230
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAG 217
+ G ++ T V +L CAR V++G E HS ++ G +VD + G
Sbjct: 231 WDHGFEPDDATVVTILPVCARLGAVDVG-EWIHSYAESSRLLRDFISVGNSLVDFYCKCG 289
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVL 275
+L A MP + + A++ +G +L ++ ++ ++P VL
Sbjct: 290 ILETAWRVFNEMP-QKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVL 348
Query: 276 S-NIHAGL 282
S HAGL
Sbjct: 349 SCCAHAGL 356
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +ILR+ + S + + I + G + + A VF ++ +N+MI +
Sbjct: 27 QIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCG 86
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ +L++F +MK +G+ +E TF +L +C+
Sbjct: 87 PSENSLLLFSQMKNRGIWPDEFTFAPLLKSCS 118
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 186/311 (59%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG + A+ LF +M R++ +WT++I+G V G A+ +F M + VR
Sbjct: 177 LVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM--RRDGVR 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++A +S++ G + LG+Q+HG +R + ++ +G ALID+Y K + A
Sbjct: 235 IDDAFVLSIV--IGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSA 292
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV +W M+ A + R +EAL ++D M G + NE+TFV ++ AC+ A
Sbjct: 293 REVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 352
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF SM ++ + P ++HY C +DLL R+G L EA+E M +MP+EPD + GA
Sbjct: 353 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC + ++C + +LLEL+PK Y++LSN++A +W+ +RK M+ I
Sbjct: 413 LLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEI 472
Query: 301 RKIPAYSLIEA 311
RK P YS IEA
Sbjct: 473 RKEPGYSWIEA 483
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K+ + A+ LF+ +RD+ ++S++ + A+ + + M+ + + +
Sbjct: 44 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCML-SADALH 102
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SV S A L + LG+Q+H + + + + ++L+D+Y K G +
Sbjct: 103 PDHFVISSVASVFARLRSR---RLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDG 159
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF SM K+ W A++S ASN R +EAL +F M + L A ++
Sbjct: 160 RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESV 219
Query: 181 QLVELGLEL 189
VEL +E+
Sbjct: 220 GAVELFVEM 228
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G + G +D A +F+ M R++VSW S+I+G+V+ F +A+ VF M V
Sbjct: 170 MVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM--RALGVE 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N S L +C G G L G++++ ++ ++ I + + TA++D+Y K GC++ A
Sbjct: 228 GNGFVATSALVACTG---AGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF S+ + + TWN MI A + R +AL +F +M+ G+ +++T + VLTACA A
Sbjct: 285 WRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHA 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G + ++ + + P EHYGC+VDL GRAG L EAK+ + MP +PD +VLGA
Sbjct: 345 GEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGA 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIHG VDL +G R+++L P + GRYV+L+N+ AG RW+ +R+ M E +
Sbjct: 405 LLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNV 464
Query: 301 RKIPAYSLIE 310
K S+IE
Sbjct: 465 SKEAGRSVIE 474
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
L V T ++ ++G ++ A VF +M +++ +WN+MIS R +AL +FDE
Sbjct: 161 ALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDE 220
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRA 216
M+ G+ N + L AC A + G E++ + EV + VVD+ +
Sbjct: 221 MRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLA--TAVVDMYCKC 278
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
G + EA S+P + ++G +HG D
Sbjct: 279 GCVDEAWRVFDSLPAR-GLTTWNCMIGGFAVHGRCD 313
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 186/311 (59%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG + A+ LF +M R++ +WT++I+G V G A+ +F M + VR
Sbjct: 259 LVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM--RRDGVR 316
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++A +S++ G + LG+Q+HG +R + ++ +G ALID+Y K + A
Sbjct: 317 IDDAFVLSIV--IGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSA 374
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV +W M+ A + R +EAL ++D M G + NE+TFV ++ AC+ A
Sbjct: 375 REVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 434
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF SM ++ + P ++HY C +DLL R+G L EA+E M +MP+EPD + GA
Sbjct: 435 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 494
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC + ++C + +LLEL+PK Y++LSN++A +W+ +RK M+ I
Sbjct: 495 LLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEI 554
Query: 301 RKIPAYSLIEA 311
RK P YS IEA
Sbjct: 555 RKEPGYSWIEA 565
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K+ + A+ LF+ +RD+ ++S++ + A+ + + M+ + + +
Sbjct: 126 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCML-SADALH 184
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SV S A L + LG+Q+H + + + + ++L+D+Y K G +
Sbjct: 185 PDHFVISSVASVFARLRSR---RLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDG 241
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF SM K+ W A++S ASN R +EAL +F M + L A ++
Sbjct: 242 RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESV 301
Query: 181 QLVELGLEL 189
VEL +E+
Sbjct: 302 GAVELFVEM 310
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G M A +F+ M KRDVVSWT+++ + E+ FK M+ V+
Sbjct: 372 LINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQG--VK 429
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ TY+ VL +C+ N L GK++H +++ ++ + + AL+ +Y K G +E A
Sbjct: 430 ANKITYMCVLKACS---NPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDA 486
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
IRVF+ M ++DV TWN +I L N R EAL ++ MK +G+R N TFV VL+AC
Sbjct: 487 IRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVC 546
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M + +VP +HY C+VD+L RAG L EA++ + ++P +P A++ GA
Sbjct: 547 NLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGA 606
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V++ L+L+P++ G YV LS I+A W LRK M E G+
Sbjct: 607 LLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGV 666
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 667 KKEPGRSWIE 676
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 158/335 (47%), Gaps = 48/335 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+K G A +FE + RDV++W ++I GFV +G EA F M+ V P+ A
Sbjct: 275 YMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG--VAPDRA 332
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY +VLS+CA GGL GK++H ++ +V V G ALI++Y K G ++ A +VF
Sbjct: 333 TYTTVLSACA---RPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVF 389
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +W ++ A + E+ F +M ++G++AN+IT++ VL AC+ ++
Sbjct: 390 DRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALK 449
Query: 185 LGLELFHS-----MLGKFEVV-PIMEHY---GCVVDL---------------------LG 214
G E+ +L V +M Y G V D LG
Sbjct: 450 WGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLG 509
Query: 215 RAGLLSEA---KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271
+ G EA E M+S P+A+ +L AC++ V E GRR K G
Sbjct: 510 QNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLV----EEGRRQFAFMSKDYG- 564
Query: 272 YVVLSNIHAG--LERWNRATDLRKAMVEAGIRKIP 304
+V + H ++ RA LR+A E I IP
Sbjct: 565 -IVPTEKHYACMVDILARAGHLREA--EDVILTIP 596
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 7/243 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A +F+ M RD VSWT++ + +G E++ + M+ VR
Sbjct: 170 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQE--RVR 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY++VLS+C L L GKQ+H +I+ +E V + TAL +Y K G + A
Sbjct: 228 PSRITYMNVLSACGSL---AALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV WN MI + + +EA F M E+G+ + T+ VL+ACAR
Sbjct: 285 REVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARP 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H+ K +V + ++++ +AG + +A++ MP + D
Sbjct: 345 GGLARGKEI-HARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTT 402
Query: 241 LLG 243
LLG
Sbjct: 403 LLG 405
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 9/274 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G ++ A LF+ + VVSW +I+G+ G EA +F M + P++
Sbjct: 73 YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLM--QQERLEPDKF 130
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VS+LS+C+ + L G+++H ++ + +G ALI +Y K G + A RVF
Sbjct: 131 TFVSILSACS---SPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF 187
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M +D +W + + A + +E+L + M ++ +R + IT++ VL+AC +E
Sbjct: 188 DAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G ++ H+ + + E + + + + G +A+E + + D ++
Sbjct: 248 KGKQI-HAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRG 305
Query: 245 CKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLS 276
G ++ H R+LE + P VLS
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLS 339
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
YV +L SC V L +GKQVH +ILR + +V++ L+ LY G + A ++F
Sbjct: 31 YVKLLQSC---VKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFD 87
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
K V +WN MIS A +EA +F M+++ L ++ TFV++L+AC+ ++
Sbjct: 88 KFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNW 147
Query: 186 GLEL 189
G E+
Sbjct: 148 GREI 151
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y D+D+A +F+ + + VV++ +II RN EA+ +F+ + + ++
Sbjct: 176 LINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESG--LK 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T + LSSCA L G L LG+ +H Y+ +N V + TALID+Y K G L+ A
Sbjct: 234 PTDVTMLVALSSCALL---GALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDA 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK M +D W+AMI + A++ +A+ M EMK+ ++ +EITF+ +L AC+
Sbjct: 291 VSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHT 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G E FHSM ++ +VP ++HYGC++DLLGRAG L EA +F+ +P +P +
Sbjct: 351 GLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRT 410
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C HG V++ V +R+ EL H G YV+LSN+ A RW+ LRK MV+ G
Sbjct: 411 LLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGA 470
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 471 LKVPGCSSIE 480
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
MD A +F+ + + D+V + ++ G+ R AI + ++ + L P++ T+ S
Sbjct: 83 ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLL--PDDYTFSS 140
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +CA L L GKQ+H ++ + ++++ LI++Y ++ A RVF +
Sbjct: 141 LLKACARL---KALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG 197
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
V +NA+I+S A NSR EAL +F E++E GL+ ++T + L++CA ++LG
Sbjct: 198 EPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG-R 256
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
H + K ++ ++D+ + G L +A + MP D A++ A H
Sbjct: 257 WIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR-DTQAWSAMIVAYATH 315
Query: 249 G 249
G
Sbjct: 316 G 316
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 55 NVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR----NEIVLSVFMGTALIDL 110
N + P ++ +S++ C L KQ+ Y ++ N VL+ + +
Sbjct: 27 NTAALEPPSSSILSLIPKCTSLREL------KQIQAYTIKTHQNNPTVLTKLINFCTSN- 79
Query: 111 YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF 170
+ ++ A R+F + D+ +N M A A+++ ++ GL ++ TF
Sbjct: 80 -PTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTF 138
Query: 171 VAVLTACARAQLVELGLEL 189
++L ACAR + +E G +L
Sbjct: 139 SSLLKACARLKALEEGKQL 157
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +D+A F N ++ +SWT++I G+V+NG EA+ +F +M +R
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM--RRAGLR 435
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT+ S++ + + L G LG+Q+H Y++R+ SVF G+ L+D+Y K GCL+ A
Sbjct: 436 PDRATFSSIIKASSSLAMIG---LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 492
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+R F M ++ +WNA+IS+ A K A+ MF+ M G + +TF++VL AC+
Sbjct: 493 LRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHN 552
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + ++ FH M ++ + P EHY CV+D LGR G S+ ++ + MPF+ D + +
Sbjct: 553 GLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTS 612
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +C+IHG +L +L ++P YV+LSNI+A +W A ++K M + G+
Sbjct: 613 ILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672
Query: 301 RKIPAYSLIE 310
RK YS +E
Sbjct: 673 RKESGYSWVE 682
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 44/290 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K +D LF+ M +RD VS+ II + N C + +F+ M +G
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P Y ++LS L + +++GKQ+H ++ + +G ALID+Y K G L+
Sbjct: 337 VLP----YATMLSVAGSLPD---VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A F + K +W A+I+ N + +EAL +F +M+ GLR + TF +++ A +
Sbjct: 390 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 449
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-------- 230
++ LG +L HS L + + +VD+ + G L EA MP
Sbjct: 450 SLAMIGLGRQL-HSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508
Query: 231 --------------------------FEPDASVLGALLGACKIHGAVDLC 254
F PD+ ++L AC +G D C
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADEC 558
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 6/223 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + +A +F M +D V++ +++ G + G +A+ +F M +
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIP 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
T+ S+L+ AG+ + L LG QVH +LR+ VL+VF+ +L+D Y K CL+
Sbjct: 234 ATHFTFSSILTVAAGMAH---LLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +D ++N +I++ A N L +F EM++ G + + +L+
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
V +G ++ H+ L + ++D+ + G+L AK
Sbjct: 351 PDVHIGKQI-HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y +GD+ +A LF + R+ +WT ++ G +A+ +F+ M+G V
Sbjct: 80 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG--VI 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VL+ V +H + ++ + VF+ L+D Y K G L A
Sbjct: 138 PDRVTVTTVLNLPGCTV--------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M KD T+NAM+ + +AL +F M+ G+ A TF ++LT A
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG ++ +L V+ + + ++D + L + + MP
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVN-NSLLDFYSKCDCLDDMRRLFDEMP 298
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +++ A LF+ M +RD+V+WT +I G+ G E++ +F M V
Sbjct: 877 LVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM--REEGVV 934
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+ +CA L G ++ + + YI R + L V +GTA+ID++ K GC+E A
Sbjct: 935 PDKVAMVTVVFACAKL---GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESA 991
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+V +W+AMI++ + + ++AL +F M G+ N+IT V++L AC+ A
Sbjct: 992 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 1051
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M + V ++HY CVVDLLGRAG L EA + + SM E D + GA
Sbjct: 1052 GLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LGAC+ H V L + LLELQP++ G Y++LSNI+A RW +R M + +
Sbjct: 1112 FLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRL 1171
Query: 301 RKIPAYSLIE 310
+KIP ++ IE
Sbjct: 1172 KKIPGWTWIE 1181
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK +++ A LF+ M +RD+V+WT +I G+ G E++ +F+ M V
Sbjct: 201 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVV 258
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+ +CA L G ++ + + YI R + L V +GTA+ID+Y K GC+E A
Sbjct: 259 PDKVAMVTVVFACAKL---GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 315
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+V +W+AMI++ + + ++AL +F M G+ ++IT ++L AC+ A
Sbjct: 316 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHA 375
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM + V ++HY CVVDLLGRAG L EA + ++SM E D + GA
Sbjct: 376 GLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGA 435
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LGAC+ H V L + LLELQ ++ G YV+LSNI+A RW +R M + +
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495
Query: 301 RKIPAYSLIE 310
+K P ++ IE
Sbjct: 496 KKTPGWTWIE 505
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 16/257 (6%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A LF+ M RD VSW+ ++ GF + G + F+ ++ RP+ T V+
Sbjct: 786 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCG--ARPDNYTLPFVI 843
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C L N L +G+ +H + + + L F+ AL+D+YGK +E A +F M +
Sbjct: 844 RACRDLKN---LQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXER 900
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL- 189
D+ TW MI A E+LV+FD+M+E+G+ +++ V V+ ACA+ + +
Sbjct: 901 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 960
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ KF++ I+ ++D+ + G + A+E M E + A++ A HG
Sbjct: 961 DYIQRKKFQLDVILG--TAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHG 1017
Query: 250 AVDLCHEVGRRLLELQP 266
GR+ L+L P
Sbjct: 1018 Q-------GRKALDLFP 1027
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 26/262 (9%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A LF+ M RD VSW+ ++ GF + G + F+ ++ RP+ T V+
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG--ARPDNYTLPFVI 167
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+C L N L +G+ +H + + + L F+ AL+D+Y K +E A +F M +
Sbjct: 168 RACRDLKN---LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQER 224
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA------RAQLVE 184
D+ TW MI A + E+LV+F++M+E+G+ +++ V V+ ACA +A++++
Sbjct: 225 DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID 284
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
++ KF++ I+ ++D+ + G + A+E M E + A++ A
Sbjct: 285 DYIQ-----RKKFQLDVILG--TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAA 336
Query: 245 CKIHGAVDLCHEVGRRLLELQP 266
HG GR+ L+L P
Sbjct: 337 YGYHGQ-------GRKALDLFP 351
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 12/188 (6%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L R N Y+S L +C L ++ VHG +L N +V LI Y L
Sbjct: 57 LQRLNPKFYISALVNCRNLTQVRQVHAQASVHG-MLENIVV-----ANKLIYFYSYYRAL 110
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +F M ++D +W+ M+ A F E+ G R + T V+ AC
Sbjct: 111 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC 170
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPFEPDA 235
+ +++G L H ++ KF + ++H+ C +VD+ + + +A+ M E D
Sbjct: 171 RDLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDL 226
Query: 236 SVLGALLG 243
++G
Sbjct: 227 VTWTVMIG 234
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+QVH + ++ ++ + L+ Y L+ A +F M ++D +W+ M+ A
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
F E+ G R + T V+ AC + +++G L H ++ KF + ++H
Sbjct: 815 GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGL--DLDH 871
Query: 206 YGC--VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ C +VD+ G+ + +A+ F+ E D ++G
Sbjct: 872 FVCAALVDMYGKCREIEDAR-FLFDKMXERDLVTWTVMIG 910
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G++ A +F++M +R+ SW ++I RNG EA+ +F ++ VR
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF--ILMQKQGVR 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T +S+LS CA L L+ GKQVH ++R + + V++ + L+ +Y K G L ++
Sbjct: 329 PTFPTLISILSVCASL---ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKS 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F KD+ WN++IS AS+ +EAL +F EM G + NE+TFVA L+AC+
Sbjct: 386 KLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSY 445
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A +VE GL+++ SM F V PI HY C+VD+LGRAG +EA E + SM EPDA+V G
Sbjct: 446 AGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWG 505
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC+ H +D+ ++L+E++P++ G Y++LSN++A RW +LRK M
Sbjct: 506 SLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRL 565
Query: 300 IRKIPAYSLIE 310
+RK P S E
Sbjct: 566 VRKSPGCSWTE 576
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY+KNG++D A +F+ M +R+VVSWT+++ G+V NG A +F M
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-------- 136
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS G + +G + +++ I + + T++I K G ++ A
Sbjct: 137 -PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR----TSMIHGLCKEGRVDEA 191
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V TW M++ N+R +A +FD M EK E+++ ++L +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQN 247
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E EL FEV+P+ C ++ LG+ G +++A+ SM DAS
Sbjct: 248 GRIEDAEEL-------FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDAS 298
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G K G +D A +F+ M +R V++WT+++ G+ +N +A +F M
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM-------- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T VS S G V G + +++ + V V A+I G+ G + +A
Sbjct: 230 -PEKTEVSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIACNAMISGLGQKGEIAKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
RVF SM ++ +W +I N E EAL +F M+++G+R T +++L+ CA
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCA 342
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-------- 163
++G + A ++F S K + +WN+M++ +N ++A +FDEM ++ +
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87
Query: 164 -------------------RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +++ A++ V++ LF M K +V +
Sbjct: 88 GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
G + D G + +A + +P + + + + G CK G VD E+ + E
Sbjct: 148 LIGFLQD-----GRIDDACKLYEMIPDKDNIARTSMIHGLCK-EGRVDEAREIFDEMSER 201
Query: 265 QPKHCGRYVVLSNIHAGLERWNRATDLRK 293
+ + + G + NR D RK
Sbjct: 202 S------VITWTTMVTGYGQNNRVDDARK 224
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 177/272 (65%), Gaps = 6/272 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y G + A LF+ M +R+ +W+S++ G V +G GEA+ VF +M+ + +
Sbjct: 172 MLGAYASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLSGRCGEALRVFHDMVRSGAV-- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLER 119
PNE VSV+S+CA L + L G VHGY + + +SV + +A+ID+YGK G +
Sbjct: 230 PNEPALVSVVSACAQLRS---LEYGAWVHGYAEQELQGAMSVILASAIIDMYGKCGGIHS 286
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF +M +++V +WNAMI+ LA N E++AL + +M+ G+R N+ITF+ +L+AC+
Sbjct: 287 AVRVFAAMPVRNVYSWNAMIAGLAMNGGERQALSLLWKMQMAGVRPNDITFIGLLSACSH 346
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV G LF SM+ F + P+ HYG +VDL+GR+G + EA F++SMP EP + G
Sbjct: 347 SGLVNEGRRLFDSMIEDFGIQPVQHHYGLMVDLIGRSGRVKEALFFVKSMPVEPHPGLWG 406
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271
AL ACK+HG V+L EV ++L+EL+P+H R
Sbjct: 407 ALASACKMHGEVELGEEVAKKLIELEPRHGSR 438
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 55/236 (23%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDV---VSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
I Y D+ SA LF + DV V+WT+++ G A F + M + N+
Sbjct: 108 ISSYFAASDVASADRLFAELSADDVADVVTWTTMVTGHANATNLQRARHFF-DAMPDRNV 166
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V N A++ Y G L
Sbjct: 167 VSWN-------------------------------------------AMLGAYASAGMLS 183
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A +F +M ++ TW++M++ L + R EAL +F +M G NE V+V++ACA
Sbjct: 184 QARDLFDAMPQRNAATWSSMLTGLVLSGRCGEALRVFHDMVRSGAVPNEPALVSVVSACA 243
Query: 179 RAQLVELGLELF----HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + +E G + + G V+ ++D+ G+ G + A +MP
Sbjct: 244 QLRSLEYGAWVHGYAEQELQGAMSVILA----SAIIDMYGKCGGIHSAVRVFAAMP 295
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ + L SCA V L H LR V++ A I Y +
Sbjct: 60 RPDHISLSFSLHSCARAVTTTRNPLTALFHSLALRLGHARDVYVANAAISSYFAASDVAS 119
Query: 120 AIRVFKSMV---IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A R+F + + DV TW M++ A+ + + A FD M ++ N +++ A+L A
Sbjct: 120 ADRLFAELSADDVADVVTWTTMVTGHANATNLQRARHFFDAMPDR----NVVSWNAMLGA 175
Query: 177 CARAQLVELGLELFHSM 193
A A ++ +LF +M
Sbjct: 176 YASAGMLSQARDLFDAM 192
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 188/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G+ A+ +FE + +D+++W++++ G+ + G EA +F ++ ++
Sbjct: 434 LLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEG--IK 491
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ SV+++CA GKQ H Y ++ + ++ + +AL+ +Y K G ++ A
Sbjct: 492 PNEFTFSSVINACASPT--AAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSA 549
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK +D+ +WN+MIS + + + K+AL +FDEM+++ + + +TF+ V+TAC A
Sbjct: 550 HEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHA 609
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F+SM+ + P M+HY C++DL RAG+L +A + MPF P A+V
Sbjct: 610 GLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRT 669
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H V+L +L+ LQP+ YV+LSN++A W T++RK M + +
Sbjct: 670 LLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKV 729
Query: 301 RKIPAYSLIE 310
+K P YS IE
Sbjct: 730 KKEPGYSWIE 739
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K +++ +F+ M +R+VVSWTS++ G+ NG +G +F M V
Sbjct: 134 LVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM--QYEGVL 191
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +V+ A LVNEG + +G QVH ++++ ++ + +LI LY ++G L A
Sbjct: 192 PNRYTVSTVI---AALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M I+D TWN+MI+ N ++ E +F++M+ G++ +TF +V+ +C A
Sbjct: 249 RDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC--A 306
Query: 181 QLVELGL 187
L EL L
Sbjct: 307 SLRELAL 313
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 141/279 (50%), Gaps = 18/279 (6%)
Query: 10 DMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
+MD A+ LF M + ++VVSWT++I+G ++NG +A+ +F M V+PN TY +
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG--VKPNHFTYSA 402
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L+ + ++H +++ S +GTAL+D Y K+G A++VF+ +
Sbjct: 403 ILTVHYPV-------FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIE 455
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KD+ W+AM++ A +EA +F ++ ++G++ NE TF +V+ ACA +
Sbjct: 456 AKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGK 515
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
FH+ K + + +V + + G + A E + E D +++ H
Sbjct: 516 QFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQH 574
Query: 249 G----AVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGL 282
G A+++ E+ +R +++ G V+ + HAGL
Sbjct: 575 GQAKKALEVFDEMQKRNMDVDAVTFIG--VITACTHAGL 611
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 14/218 (6%)
Query: 17 LFENMLKRDVV--SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
LF+ + R ++ + R+ EA+ +F +++ + ++P+E+T V + CA
Sbjct: 47 LFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSS--LQPDESTLSCVFNICA 104
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134
G ++ LG+QVH ++ +V V +GT+L+D+Y K + RVF M ++V +
Sbjct: 105 GSLDGK---LGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161
Query: 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
W ++++ + N +F +M+ +G+ N T V+ A +V +GL++ H+M+
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV-HAMV 220
Query: 195 GKF---EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
K E +P+ + ++ L R G+L +A++ M
Sbjct: 221 VKHGFEEAIPV---FNSLISLYSRLGMLRDARDVFDKM 255
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 181/309 (58%), Gaps = 6/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I V+N ++ A +F+NML RDVVSWT+II+ + + EA+ FK M+ +P
Sbjct: 491 IAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE--KP 548
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N +LS C GL G LG+Q+H +++ + + + AL+ +Y K GC + +
Sbjct: 549 NSPILTILLSVCGGL---GSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SH 604
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+VF SM +D+ TWN I+ A + +EA+ M++ M+ G+ NE+TFV +L AC+ A
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
LV+ G + F SM + + P++EHY C+VDLLGR G + A++F+ MP EPD + AL
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSAL 724
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LGACKIH ++ +L +P + G YV+LSNI++ L W +LRK M + G+
Sbjct: 725 LGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVS 784
Query: 302 KIPAYSLIE 310
K P S ++
Sbjct: 785 KEPGCSWMQ 793
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 112/198 (56%), Gaps = 9/198 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY++NG +D A LF+ M R+ +SW +I G+ +NG EA+ + + + + N +
Sbjct: 358 MITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL--HRNGML 415
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ S +C+ + G L G+QVH ++ + ++ ALI +YGK +E
Sbjct: 416 PSLSSLTSSFLACSHI---GALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYV 472
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +KD +WN+ I++L N+ ++A +FD M L + +++ +++A A+A
Sbjct: 473 RQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQA 528
Query: 181 QLVELGLELFHSMLGKFE 198
+ + +E F +ML + E
Sbjct: 529 ERGDEAVEFFKTMLHEHE 546
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 15/247 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY + M A LF+ M +R++V+WT +I+G+VR G+ +F+ M +
Sbjct: 163 MVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM--HHEGAS 220
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK-VGCLER 119
P+++ + SVLS+ GL + G L + + + +L+ V +GT+++++Y + L+
Sbjct: 221 PDQSNFASVLSAVTGLQDLGVLEVLRPL---VLKTGFESDVVIGTSILNVYTRDASALDI 277
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI+ F MV ++ TW+ MI++L+ R A+ ++ K + + A+LT AR
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQ----TALLTGLAR 333
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LF + PI+ + ++ + G++ EAKE MPF S G
Sbjct: 334 CGRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAG 388
Query: 240 ALLGACK 246
+ G +
Sbjct: 389 MIAGYAQ 395
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A +F+ M RD+++W S+I+ + +G +A +F + G N T
Sbjct: 47 GRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGG------NVRTATI 100
Query: 69 VLSSCAGLVNEGGLYLGKQV-HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+LS A L G + ++V G RN + + A++ Y + G + A R+F +M
Sbjct: 101 LLSGYARL---GRVLDARRVFDGMPERNTVAWN-----AMVSCYVQNGDITMARRLFDAM 152
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +WN+M++ + + +A +F +M ++ L +T+ +++ R + G
Sbjct: 153 PSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNL----VTWTVMISGYVRIEQHGKGW 208
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
++F +M H G D A +LS
Sbjct: 209 DIFR----------MMHHEGASPDQSNFASVLS 231
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF-KNMMGNVNLVRPNEATYVSV 69
+D AI F+ M++R+ +W+++I G AI V+ ++ + ++ P++ ++
Sbjct: 275 LDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI----PSQTALLTG 330
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L+ C G + E + + + + IV+S A+I Y + G ++ A +F M
Sbjct: 331 LARC-GRITEARILFEQ------IPDPIVVS---WNAMITGYMQNGMVDEAKELFDRMPF 380
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
++ +W MI+ A N R +EAL + + G+ + + + AC+ +E G ++
Sbjct: 381 RNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV 440
Query: 190 FHSMLGK 196
HS+ K
Sbjct: 441 -HSLAVK 446
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
+A I ++G L A VF +M +D+ WN+MIS+ ++ ++A ++FD + +R
Sbjct: 37 SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
I +L+ AR V +F M + V + +V + G ++ A+
Sbjct: 97 TATI----LLSGYARLGRVLDARRVFDGMPERNTVA-----WNAMVSCYVQNGDITMARR 147
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVD 252
+MP S + G C VD
Sbjct: 148 LFDAMPSRDVTSWNSMVTGYCHSRQMVD 175
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 199/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A +F + +RDVV+ T+II+G+ + G EA+ +F+ + + +
Sbjct: 232 LLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL--QIEGMN 289
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY SVL++ +GL L GKQVH ++LR+ V + +LID+Y K G + A
Sbjct: 290 SNSVTYASVLTALSGL---AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 346
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F SM + +WNAM+ + + +E L +F M+E+ ++ + IT++AVL+ C+
Sbjct: 347 RRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSH 406
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
QL ++GLE+F++M+ GK + P + HYGCVVDLLGRAG + EA +F++ MPF P A++
Sbjct: 407 GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIW 466
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLG+C++H V++ VG++LLEL+P++ G YV+LSN++A +W ++R M E
Sbjct: 467 GSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 526
Query: 299 GIRKIPAYSLIE 310
+ K P S +E
Sbjct: 527 AVTKEPGRSWVE 538
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 18/250 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +++VVSWT++I+ + + G EA+ +F M+ + PN T+ ++L+SC G
Sbjct: 147 MFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSD--TEPNHFTFATILTSCYGS 204
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G G+Q+H ++ +F+G++L+D+Y K G + A VF + +DV
Sbjct: 205 L---GFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACT 261
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML-- 194
A+IS A ++EAL +F +++ +G+ +N +T+ +VLTA + + G ++ +L
Sbjct: 262 AIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS 321
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLC 254
G++ V ++ ++D+ + G + A+ SMP S L+G K
Sbjct: 322 GQYSYVVLL---NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK-------- 370
Query: 255 HEVGRRLLEL 264
H + R +LEL
Sbjct: 371 HGMAREVLEL 380
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++L+ C V++ + G++VH ++++ + SV++ T LI LY K CL A +F
Sbjct: 93 YDTILNEC---VSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFD 149
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M K+V +W AMIS+ + EAL +F EM N TF +LT+C + E
Sbjct: 150 EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFET 209
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ HS+ K M ++D+ ++G + +A +P
Sbjct: 210 GRQI-HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 253
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 189/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+D Y K G D++ A +F+ M +RDVVSW S+I + +NG EAI ++ M+
Sbjct: 239 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 297
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ N +VL +CA + G + GK++H ++R + +V++GT+++D+Y K G +E
Sbjct: 298 IKCNAVALSAVLLACA---HAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVE 354
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R F+ + K++ +W+AMI+ + R +EAL +F EMK GLR N ITF++VL AC+
Sbjct: 355 MASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS 414
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G +++M +F + +EHYGC+VDLLGRAG L EA ++ M +PDA++
Sbjct: 415 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 474
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+IH V+L +RL EL + G YV+LSNI+A W +R +
Sbjct: 475 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTR 534
Query: 299 GIRKIPAYSLIE 310
I K P YS E
Sbjct: 535 RIEKPPGYSSFE 546
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 21/259 (8%)
Query: 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR 94
G+VRN ++ +F+ M+ + + +EA + S+ A + + G + +H I +
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRG---VTASLHALIAK 226
Query: 95 NEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+ + ++D Y K G LE A +VF +M +DV +WN+MI+ A N EA+
Sbjct: 227 IGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAI 285
Query: 153 VMFDEMKE--KGLRANEITFVAVLTACARAQLVELGLELFHSM--LGKFEVVPIMEHYGC 208
++ +M G++ N + AVL ACA A ++ G + + + +G E V +
Sbjct: 286 GLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGT---S 342
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLEL 264
+VD+ + G + A R + E + A++ +HG A+++ E+ R L
Sbjct: 343 IVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRGQEALEIFTEMKRS--GL 399
Query: 265 QPKHCGRYVVLSNI-HAGL 282
+P + VL+ HAGL
Sbjct: 400 RPNYITFISVLAACSHAGL 418
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 187/318 (58%), Gaps = 17/318 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GDM+SA LF+++ +D+V+WT+++ G+ +NG EA+ F+ M +V +
Sbjct: 215 LIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGM-E 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-------MGTALIDLYGK 113
+E T V+S+CA LG H +R+ S F +G+ALID+Y K
Sbjct: 273 TDEVTLAGVISACA--------QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSK 324
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G + A +VF+ M ++V ++++MI A + R AL +F +M + +R N++TF+ +
Sbjct: 325 CGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L+AC+ A LVE G +LF M F V P +HY C+VDLLGRAG L EA + +++MP EP
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444
Query: 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
+ V GALLGAC+IHG D+ L +L+P G Y++LSNI+A RW + LRK
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504
Query: 294 AMVEAGIRKIPAYSLIEA 311
+ E G +K P S E
Sbjct: 505 VIREKGFKKNPGCSWFEG 522
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 66/322 (20%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
+L+F + + WT++I G+ G E+ + M + V P T+ ++ +C
Sbjct: 95 PLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKAC 152
Query: 74 AGLVNEGGLYLGKQVHGY-ILRNEIVLSVFMGTALIDLY---GKVGC------------- 116
+N + LGKQVH IL +++G ++IDLY G +GC
Sbjct: 153 GAALN---MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDV 209
Query: 117 ---------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+E A +F + KD+ W AM++ A N R KEAL F +M++
Sbjct: 210 VSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV 269
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-----------CVV 210
G+ +E+T V++ACA+ V+ H+ + I E G ++
Sbjct: 270 GMETDEVTLAGVISACAQLGAVK------HANW----IRDIAERSGFGPSGNVVVGSALI 319
Query: 211 DLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
D+ + G EA + M F + +LG + + H A+ L H++ + E++P
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG-RAHSALQLFHDMLK--TEIRP 376
Query: 267 KHCGRYVVLSNI-HAGLERWNR 287
+LS HAGL R
Sbjct: 377 NKVTFIGILSACSHAGLVEQGR 398
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--ERAIRVFKSMVIKDVCTWNAMISSLA 143
KQVH +I+RN + ++ T LI + KV + VF + + W AMI A
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
E+ + M+ G+ TF A+ AC A ++LG ++
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK +D+A LFE + R+VV WT++I+GF + EA +F+ M+ L
Sbjct: 252 IIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESIL-- 309
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T ++L SC+ L G L GK VHGY++RN I + T+ ID+Y + G ++ A
Sbjct: 310 PNQCTLAAILVSCSSL---GSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMA 366
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++V +W++MI++ N +EAL F +MK + + N +TFV++L+AC+ +
Sbjct: 367 RTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHS 426
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G + F SM + VVP EHY C+VDLLGRAG + EAK F+ +MP +P AS GA
Sbjct: 427 GNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGA 486
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH VDL E+ +LL ++P+ YV+LSNI+A W +R+ M G
Sbjct: 487 LLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGY 546
Query: 301 RKIPAYSLIE 310
RK S E
Sbjct: 547 RKHVGQSATE 556
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 129/262 (49%), Gaps = 12/262 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G M+SA +F+ + R+ V W ++ G+++ E +F +M + L
Sbjct: 150 LVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLF-CLMRDTGLAL 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ T + ++ +C G V G + GK VHG +R + S ++ ++ID+Y K L+
Sbjct: 209 -DALTLICLVKAC-GNVFAGKV--GKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F++ V ++V W +IS A R EA +F +M + + N+ T A+L +C+
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSS 324
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G + H + + + ++ +D+ R G + A+ MP E +
Sbjct: 325 LGSLRHGKSV-HGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMP-ERNVISWS 382
Query: 240 ALLGACKIHG----AVDLCHEV 257
+++ A I+G A+D H++
Sbjct: 383 SMINAFGINGLFEEALDCFHKM 404
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNG--CFGEAICVFKNMMGNV 56
+ + Y+++ +D A F + KR+ SW +I++G+ ++ C+ + + ++ M +
Sbjct: 45 LTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHC 104
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+ V + V + +C GL G L G +HG ++N + ++ +L+++Y ++G
Sbjct: 105 DGV--DSFNLVFAIKACVGL---GLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGT 159
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF + +++ W ++ S++ E +F M++ GL + +T + ++ A
Sbjct: 160 MESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKA 219
Query: 177 C 177
C
Sbjct: 220 C 220
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 177/306 (57%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+K GD+ SA +F M R+VVSW +I G+ +NG + + +M +P+
Sbjct: 440 YIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSM--KAEGFQPDRV 497
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +++L +C L GL GK VH ++ + + T+LI +Y K G + A VF
Sbjct: 498 TVITILEACGAL---AGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVF 554
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D WNAM++ + EA+ +F M ++ + NEIT AV++AC+RA LV+
Sbjct: 555 DKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQ 614
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+F M F++ P +HYGC+VDLLGRAG L EA+EF++SMP EPD SV ALLGA
Sbjct: 615 EGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGA 674
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
CK H V L +LEL+P + Y+ LSNI+A RW+ +T +R+ M + G++K
Sbjct: 675 CKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDR 734
Query: 305 AYSLIE 310
S IE
Sbjct: 735 GESSIE 740
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 127/236 (53%), Gaps = 15/236 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G++ A +F M +R+VVSWT+II ++ EA +++ M+ +
Sbjct: 198 LITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG--IS 255
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+VS+L+SC L G+++H +I + + + ALI +Y K ++ A
Sbjct: 256 PNAVTFVSLLNSCN---TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLA-SNSREKEAL----VMFDEMKEKGLRANEITFVAVLT 175
+F M +DV +W+AMI+ A S ++KE++ + + M+ +G+ N++TF+++L
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372
Query: 176 ACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
AC +E G ++ H+ L K FE+ ++ + ++ + G + EA++ M
Sbjct: 373 ACTAHGALEQGRQI-HAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKM 425
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K D+ SA +F M RDVV+W+S+I + N +A F+ M + N +
Sbjct: 97 LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT-DAN-IE 154
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T++S+L +C N L G+++H + + V + TALI +Y K G + A
Sbjct: 155 PNRITFLSILKACN---NYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVA 211
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++V +W A+I + A + + EA ++++M + G+ N +TFV++L +C
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + G + HS + + + M ++ + + + EA+E M
Sbjct: 272 EALNRGRRI-HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRM 319
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 39/239 (16%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N TY V+ CA GK VH + + + +++G +LI+ Y K + A
Sbjct: 55 NSNTYGCVIEHCAKARR---FEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAE 111
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+VF+ M ++DV TW++MI++ A N+ +A F+ M + + N ITF+++L AC
Sbjct: 112 QVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYS 171
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
++E G ++ H+++ ++M E D +V AL
Sbjct: 172 ILEKGRKI-HTIV--------------------------------KAMGMETDVAVATAL 198
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+ G + + EV ++ E ++ + + +A + N A +L + M++AGI
Sbjct: 199 ITMYSKCGEISVACEVFHKMTE---RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 31/160 (19%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A +F+ M RD V+W +++ G+ ++G EA+ +FK M+ V
Sbjct: 537 LIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK--ERVS 594
Query: 61 PNEATYVSVLSSC--AGLVNEG-----------GLYLGKQVHGYILRNEIVLSVFMGTAL 107
PNE T +V+S+C AGLV EG + KQ +G +
Sbjct: 595 PNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYG---------------CM 639
Query: 108 IDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLASNS 146
+DL G+ G L+ A +SM + D+ W+A++ + S++
Sbjct: 640 VDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHN 679
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +D+A F N ++ +SWT++I G+V+NG EA+ +F +M +R
Sbjct: 576 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM--RRAGLR 633
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT+ S++ + + L G LG+Q+H Y++R+ SVF G+ L+D+Y K GCL+ A
Sbjct: 634 PDRATFSSIIKASSSLAMIG---LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 690
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+R F M ++ +WNA+IS+ A K A+ MF+ M G + +TF++VL AC+
Sbjct: 691 LRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHN 750
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + ++ FH M ++ + P EHY CV+D LGR G S+ ++ + MPF+ D + +
Sbjct: 751 GLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTS 810
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +C+IHG +L +L ++P YV+LSNI+A +W A ++K M + G+
Sbjct: 811 ILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 870
Query: 301 RKIPAYSLIE 310
RK YS +E
Sbjct: 871 RKESGYSWVE 880
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 44/290 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K +D LF+ M +RD VS+ II + N C + +F+ M +G
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P Y ++LS L + +++GKQ+H ++ + +G ALID+Y K G L+
Sbjct: 535 VLP----YATMLSVAGSLPD---VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 587
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A F + K +W A+I+ N + +EAL +F +M+ GLR + TF +++ A +
Sbjct: 588 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-------- 230
++ LG +L HS L + + +VD+ + G L EA MP
Sbjct: 648 SLAMIGLGRQL-HSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 706
Query: 231 --------------------------FEPDASVLGALLGACKIHGAVDLC 254
F PD+ ++L AC +G D C
Sbjct: 707 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADEC 756
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 10/183 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y +GD+ +A LF + R+ +WT ++ G +A+ +F+ M+G V
Sbjct: 294 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG--VI 351
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VL+ V +H + ++ + VF+ L+D Y K G L A
Sbjct: 352 PDRVTVTTVLNLPGCTV--------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 403
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M KD T+NAM+ + +AL +F M+ G + + + + +R+
Sbjct: 404 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRS 463
Query: 181 QLV 183
V
Sbjct: 464 TSV 466
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 22/223 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + +A +F M +D V++ +++ G + G +A+ +F M
Sbjct: 390 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM-------- 441
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
A Y + L+L + H R+ VL+VF+ +L+D Y K CL+
Sbjct: 442 -RRAGY-----------SRHPLHLLQYSHSRS-RSTSVLNVFVNNSLLDFYSKCDCLDDM 488
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +D ++N +I++ A N L +F EM++ G + + +L+
Sbjct: 489 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 548
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
V +G ++ H+ L + ++D+ + G+L AK
Sbjct: 549 PDVHIGKQI-HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 590
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A FE + +D ++W +++GF ++G EA+ VF M + + V+
Sbjct: 487 LVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM--DQSGVK 544
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+VS LS+ A L + GKQ+H +++ +G ALI LYGK G E A
Sbjct: 545 HNVFTFVSALSASANLAE---IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M ++ +WN +I+S + + R EAL +FD+MK++G++ N++TF+ VL AC+
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM ++ + P +HY CV+D+ GRAG L AK+F+ MP DA V
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H +++ + LLEL+P YV+LSN +A E+W +RK M + G+
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 782 RKEPGRSWIE 791
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 11/257 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A + E + ++DVVSWTS+I G+V++ C +A+ FK M +
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG--IW 443
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S +S CAG+ + G Q+H I + V + AL++LY + G + A
Sbjct: 444 PDNIGLASAISGCAGI---NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ + KD TWN ++S A + +EAL +F M + G++ N TFV+ L+A A
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G ++ H+ + K E ++ L G+ G +AK M E +
Sbjct: 561 AEIKQGKQI-HARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNT 618
Query: 241 LLGACKIHG----AVDL 253
++ +C HG A+DL
Sbjct: 619 IITSCSQHGRGLEALDL 635
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y KNG + A +FE + RD VSW ++++G+ +NG EA+ +++ M + V
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM--HRAGVV 140
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P SVLSSC A L +G L +H ++ +F+G A+I LY + G
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRL-----IHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +D T+N +IS A + AL +F+EM+ GL + +T ++L ACA
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 179 RAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEA 222
++ G +L HS L K + IME G ++DL + G + A
Sbjct: 256 SLGDLQKGTQL-HSYLFKAGISSDYIME--GSLLDLYVKCGDVETA 298
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 116/222 (52%), Gaps = 6/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK GD+++A+++F + + +VV W ++ F + ++ +F M +R
Sbjct: 285 LLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG--IR 342
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY +L +C + LG+Q+H ++ +++ LID+Y K G LE+A
Sbjct: 343 PNQFTYPCILRTCTCTRE---IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RV + + KDV +W +MI+ + K+AL F EM++ G+ + I + ++ CA
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ GL++ H+ + + + +V+L R G + EA
Sbjct: 460 NAMRQGLQI-HARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G A +F +M RD V++ ++I+G + G A+ +F+ M + + P+
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM--QFSGLSPDCV 245
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+L++CA L G L G Q+H Y+ + I M +L+DLY K G +E A+ +F
Sbjct: 246 TISSLLAACASL---GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
S +V WN M+ + + ++ +F +M+ G+R N+ T+ +L C + ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
LG E HS+ K M G ++D+ + G L +A+ +
Sbjct: 363 LG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M +R S + GF+ + + + +F + + P + + L +C G N
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD--FACALRACRG--NGR 56
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+ ++H + + +G LIDLY K G + A RVF+ + +D +W AM+S
Sbjct: 57 RWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLS 116
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
A N +EAL ++ +M G+ +VL++C +A+L G L H+ K
Sbjct: 117 GYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHAQGYKHGFC 175
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ L R G A+ MP
Sbjct: 176 SEIFVGNAVITLYLRCGSFRLAERVFCDMP 205
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A FE + +D ++W +++GF ++G EA+ VF M + + V+
Sbjct: 487 LVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM--DQSGVK 544
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+VS LS+ A L + GKQ+H +++ +G ALI LYGK G E A
Sbjct: 545 HNVFTFVSALSASANLAE---IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M ++ +WN +I+S + + R EAL +FD+MK++G++ N++TF+ VL AC+
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM ++ + P +HY CV+D+ GRAG L AK+F+ MP DA V
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H +++ + LLEL+P YV+LSN +A E+W +RK M + G+
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 782 RKEPGRSWIE 791
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 11/257 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A + E + ++DVVSWTS+I G+V++ C +A+ FK M +
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG--IW 443
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S +S CAG+ + G Q+H I + V + AL++LY + G + A
Sbjct: 444 PDNIGLASAISGCAGI---NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ + KD TWN ++S A + +EAL +F M + G++ N TFV+ L+A A
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G ++ H+ + K E ++ L G+ G +AK M E +
Sbjct: 561 AEIKQGKQI-HARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNT 618
Query: 241 LLGACKIHG----AVDL 253
++ +C HG A+DL
Sbjct: 619 IITSCSQHGRGLEALDL 635
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y KNG + A +FE + RD VSW ++++G+ +NG EA+ +++ M + V
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM--HRAGVV 140
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P SVLSSC A L +G L +H ++ +F+G A+I LY + G
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRL-----IHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +D T+N +IS A + AL +F+EM+ GL + +T ++L ACA
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 179 RAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEA 222
++ G +L HS L K + IME G ++DL + G + A
Sbjct: 256 SLGDLQKGTQL-HSYLFKAGISSDYIME--GSLLDLYVKCGDVETA 298
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 116/222 (52%), Gaps = 6/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK GD+++A+++F + + +VV W ++ F + ++ +F M +R
Sbjct: 285 LLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG--IR 342
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY +L +C + LG+Q+H ++ +++ LID+Y K G LE+A
Sbjct: 343 PNQFTYPCILRTCTCTRE---IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RV + + KDV +W +MI+ + K+AL F EM++ G+ + I + ++ CA
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ GL++ H+ + + + +V+L R G + EA
Sbjct: 460 NAMRQGLQI-HARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G A +F +M RD V++ ++I+G + G A+ +F+ M + + P+
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM--QFSGLSPDCV 245
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+L++CA L G L G Q+H Y+ + I M +L+DLY K G +E A+ +F
Sbjct: 246 TISSLLAACASL---GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
S +V WN M+ + + ++ +F +M+ G+R N+ T+ +L C + ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
LG E HS+ K M G ++D+ + G L +A+ +
Sbjct: 363 LG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M +R S + GF+ + + + +F + + P + + L +C G N
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD--FACALRACRG--NGR 56
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+ ++H + + +G LIDLY K G + A RVF+ + +D +W AM+S
Sbjct: 57 RWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLS 116
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
A N +EAL ++ +M G+ +VL++C +A+L G L H+ K
Sbjct: 117 GYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHAQGYKHGFC 175
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ L R G A+ MP
Sbjct: 176 SEIFVGNAVITLYLRCGSFRLAERVFCDMP 205
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y MD ++ +F++ D V W S++ G+ +NG EA+ +F+ M+ VR
Sbjct: 211 LIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG--VR 268
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S++ + L L LGKQ+H Y++R ++F+ ++LID+Y K G ++ A
Sbjct: 269 PVPVTFSSLIPAFGNL---SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIA 325
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + D+ +W AMI A + EA V+F+ M+ ++ N ITF+AVLTAC+ A
Sbjct: 326 RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHA 385
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+SM ++ VP +EH + D LGRAG L EA F+ M +P +SV
Sbjct: 386 GLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWST 445
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H L EV +++ EL+PK G +V+LSN+++ RWN A LRK+M G+
Sbjct: 446 LLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGM 505
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 506 KKEPACSWIE 515
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 16/286 (5%)
Query: 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62
+G +++ +S +F+ ML+RD VSW ++I G + EA+ + + M + + P+
Sbjct: 112 EGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM--PD 169
Query: 63 EATYVSVL---SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
T +VL + CA + G VHGY ++N VF+G++LID+Y ++
Sbjct: 170 TFTLSTVLPIFAECADIKR------GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDY 223
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+++VF S D WN+M++ A N +EAL +F M + G+R +TF +++ A
Sbjct: 224 SMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGN 283
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+ LG +L H+ L + + ++D+ + G + A+ + PD
Sbjct: 284 LSLLRLGKQL-HAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWT 341
Query: 240 ALLGACKIHGAVDLCHEVGRR--LLELQPKHCGRYVVLSNI-HAGL 282
A++ +HG + R L ++P H VL+ HAGL
Sbjct: 342 AMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGL 387
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
SW I G F AI +F M +V A+ + L SCAGL G L
Sbjct: 14 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGL---GLCTLAAS 70
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKV---------------GCLERAI-----RVFKSM 127
+H +R+ F AL++L K+ G LE A +VF M
Sbjct: 71 LHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEM 130
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ +D +WN +I A + R +EAL M EM G + T VL A ++ G+
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 190
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +D+A F N ++ +SWT++I G+V+NG EA+ +F +M +R
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM--RRAGLR 435
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT+ S++ + + L G LG+Q+H Y++R+ SVF G+ L+D+Y K GCL+ A
Sbjct: 436 PDRATFSSIIKASSSLAMIG---LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 492
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+R F M ++ +WNA+IS+ A K A+ MF+ M G + +TF++VL AC+
Sbjct: 493 LRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHN 552
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + ++ FH M ++ + P EHY CV+D LGR G S+ ++ + MPF+ D + +
Sbjct: 553 GLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTS 612
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L +C+IHG +L +L ++P YV+LSNI+A +W A ++K M + G+
Sbjct: 613 ILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672
Query: 301 RKIPAYSLIE 310
RK YS +E
Sbjct: 673 RKESGYSWVE 682
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 44/290 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K +D LF+ M +RD VS+ II + N C + +F+ M +G
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P Y ++LS L + +++GKQ+H ++ + +G ALID+Y K G L+
Sbjct: 337 VLP----YATMLSVAGSLPD---VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 389
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A F + K +W A+I+ N + +EAL +F +M+ GLR + TF +++ A +
Sbjct: 390 AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 449
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-------- 230
++ LG +L HS L + + +VD+ + G L EA MP
Sbjct: 450 SLAMIGLGRQL-HSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508
Query: 231 --------------------------FEPDASVLGALLGACKIHGAVDLC 254
F PD+ ++L AC +G D C
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADEC 558
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 113/224 (50%), Gaps = 6/224 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + +A +F M +D V++ +++ G + G +A+ +F M +
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM--RRAGIP 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
T+ S+L+ AG+ + L LG QVH +LR+ VL+VF+ +L+D Y K CL+
Sbjct: 234 ATHFTFSSILTVAAGMAH---LLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M +D ++N +I++ A N L +F EM++ G + + +L+
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
V +G ++ H+ L + ++D+ + G+L AK
Sbjct: 351 PDVHIGKQI-HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y +GD+ +A LF + R+ +WT ++ G +A+ +F+ M+G V
Sbjct: 80 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEG--VI 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VL+ V +H + ++ + VF+ L+D Y K G L A
Sbjct: 138 PDRVTVTTVLNLPGCTV--------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M KD T+NAM+ + +AL +F M+ G+ A TF ++LT A
Sbjct: 190 RRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGM 249
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ LG ++ +L V+ + + ++D + L + + MP
Sbjct: 250 AHLLLGHQVHALVLRSTSVLNVFVN-NSLLDFYSKCDCLDDMRRLFDEMP 298
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY KNG ++ A +F +M ++DVVSW+++I+ + N E + +F M G V
Sbjct: 166 MVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCG--VS 223
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +SV+S+CA N G L + +H + + + + ALID++ K G L A
Sbjct: 224 PDEITMLSVISACA---NIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLA 280
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F +M K+V TW +MI++ A + AL +F +MK +G+ N +TF+ +L AC A
Sbjct: 281 LNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHA 340
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G LF ML ++ + P EHYGC+VDL+GRA L+ EA + + SM P+ ++ G+
Sbjct: 341 GLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGS 400
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +HG ++L +++LEL P H G YV+LSNIHA WN A LR M G+
Sbjct: 401 LLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGV 460
Query: 301 RKIPAYSLIE 310
K YS +E
Sbjct: 461 SKETGYSWLE 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 38/264 (14%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +RD+V+W +++ + + E + + M + V P++ +VLS+C
Sbjct: 50 VFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKM--KRSRVVPDQVILATVLSTCG-- 105
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG------------------------ 112
+ L GK +H YI ++I + + +ALI++Y
Sbjct: 106 -HTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSST 164
Query: 113 -------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
K G +E A +F M KDV +W+AMIS+ A N++ E L +F++M+ G+
Sbjct: 165 AMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSP 224
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+EIT ++V++ACA ++ HS++G I+ ++D+ + G L+ A
Sbjct: 225 DEITMLSVISACANIGSLDKA-RWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNM 283
Query: 226 MRSMPFEPDASVLGALLGACKIHG 249
+MP + +++ A +HG
Sbjct: 284 FNAMP-RKNVITWTSMIAAFAMHG 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ HG +R F+GTAL+ Y + A RVF M +D+ W M+ S +
Sbjct: 13 RGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNT 72
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
+E L++ ++MK + +++ VL+ C + + G + HS +
Sbjct: 73 QNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSG-KTIHSYI 120
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A LF+ + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 237 LIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--T 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLE 118
PN+ T +SVL +CA L G + +G+ +H YI + + + + T+LID+Y K G +E
Sbjct: 295 PNDVTMLSVLPACAHL---GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 351
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF SM+ K + +WNAMI A + R + +F M++ G+ ++ITFV +L+AC+
Sbjct: 352 AAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACS 411
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++LG +F SM +++ P +EHYGC++DLLG +GL EA+E + +M EPD +
Sbjct: 412 HSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 471
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
+LL ACK+HG V+L + L++++P++ Y++LSNI+A RW +R +
Sbjct: 472 CSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGK 531
Query: 299 GIRKIPAYSLIE 310
++K+P S IE
Sbjct: 532 CMKKVPGCSSIE 543
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 147/266 (55%), Gaps = 9/266 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY GD+ SA LF+ + +DVVSW ++I+G+ GC+ EA+ +F+ MM +N VR
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM-KMN-VR 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+TYV+VLS+CA + G + LG+QVH ++ + ++ + ALIDLY K G +E A
Sbjct: 194 PDESTYVTVLSACA---HSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + KDV +WN +I + KEAL++F EM G N++T ++VL ACA
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+++G H + K V ++D+ + G + A + SM S
Sbjct: 311 GAIDIG-RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSW 368
Query: 239 GALLGACKIHGAVDLCHEVGRRLLEL 264
A++ +HG D ++ R+ ++
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKI 394
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 38/261 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A +FE + + + + W ++I G + ++ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMV-SLGLL-PNSYTFPFLLKSC 74
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK-------- 125
A G+Q+HG +L+ L +++ T+LI +Y + LE A +VF
Sbjct: 75 A---KSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVV 131
Query: 126 -----------------------SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ +KDV +WNAMIS A KEAL +F+EM +
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R +E T+V VL+ACA + +ELG ++ HS + ++ ++DL + G + A
Sbjct: 192 VRPDESTYVTVLSACAHSGSIELGRQV-HSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250
Query: 223 KEFMRSMPFEPDASVLGALLG 243
+ + ++ D L+G
Sbjct: 251 CGLFQGLSYK-DVISWNTLIG 270
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY + G M A LF ML + +VSWT++I+G+ GC+ EA+ F+ M + +
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIE 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +SVL SCA L G L LGK +H Y R + + ALI++Y K G + +A
Sbjct: 239 PDEISLISVLPSCAQL---GSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I++F M KDV +W+ MIS A + A+ F+EM+ ++ N ITF+ +L+AC+
Sbjct: 296 IQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHV 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ + GL F M +++ P +EHYGC++D+L RAG L A E ++MP +PD+ + G+
Sbjct: 356 GMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGS 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ G +D+ L+EL+P+ G YV+L+NI+A L +W + LRK + +
Sbjct: 416 LLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENM 475
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 476 KKTPGGSLIE 485
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 43/295 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D K DMD A LF + +V + SII + N + + I ++K ++ +
Sbjct: 48 MVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK-SFEL 106
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + SCA L G YLGKQVHG++ + V ALID+Y K L A
Sbjct: 107 PDRFTFPFMFKSCASL---GSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDA 163
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREK------------------------------- 149
+VF M +DV +WN+++S A + K
Sbjct: 164 HKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYG 207
EA+ F EM+ G+ +EI+ ++VL +CA+ +ELG + L+ G + +
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVC---N 280
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC---KIHGAVDLCHEVGR 259
++++ + G++S+A + M + S + G HGA++ +E+ R
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQR 335
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K+++ I+ + + S FM T ++D K+ ++ A R+F + +V +N++I + N
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 146 SREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
S + + ++ ++ K + TF + +CA LG ++ H L KF
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV-HGHLCKF 138
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 190/324 (58%), Gaps = 21/324 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
MI GY D+ A LF+ M +++ VSW +II+G+V+ G A +F M
Sbjct: 243 MIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVV 302
Query: 53 ------MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGT 105
GNV +P+E VS++S+C+ + G L L K V Y+ ++ I V +
Sbjct: 303 AWSALISGNV---KPDEFIMVSLMSACSQM---GSLELAKWVDDYVRKSSIDVHRAHVIA 356
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
ALID+ K G ++RA ++F+ M +D+ ++ +M+ L+ + +A+ +F M +GL
Sbjct: 357 ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTP 416
Query: 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+++ F +LTAC+RA LV+ G F SM + +VP +HY C+VDLLGRAG L EA E
Sbjct: 417 DDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYEL 476
Query: 226 MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285
++SMP EP A GALLGACK+H ++L V +L EL+P++ G YV+LSNI+A E+W
Sbjct: 477 LKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQW 536
Query: 286 NRATDLRKAMVEAGIRKIPAYSLI 309
+ LR M E GIRKIP S I
Sbjct: 537 LDVSLLRNKMRERGIRKIPGCSWI 560
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + V W + I G+ N + +F M + + P++ TY S++ +C+ +
Sbjct: 127 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV--PDKFTYPSLIKACSKV 184
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
G+ G HG +R + VF+ T+LIDLYGK G + A +VF M ++V +W
Sbjct: 185 C---GVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWT 241
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMI+ AS S EA +FDEM EK N +++ A+++ + + ++F M +
Sbjct: 242 AMIAGYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFDEMPHR 297
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
D++ + L+S +PD ++ +L+ AC G+++L
Sbjct: 298 NR------------DVVAWSALISGN--------VKPDEFIMVSLMSACSQMGSLELAKW 337
Query: 257 V 257
V
Sbjct: 338 V 338
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+QVH I+R + F+ + + L + VF + WN I + N
Sbjct: 90 EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSEN 149
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+ +F MK ++ T+ +++ AC++ V+ G+ FH + V +
Sbjct: 150 YSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVA-FHGSAVRCGVGGDVFV 208
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
++DL G+ G + A++ M
Sbjct: 209 MTSLIDLYGKCGEILCARKVFDEM 232
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GD++ A +LFE+M +R+ +SW++++ + R G F E +C+F+ M +
Sbjct: 458 MIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTM-- 515
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ VSVL++CA L G L G VH Y + + + TAL+D+Y K GC+E A
Sbjct: 516 PNESVLVSVLTACAHL---GALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESA 572
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ + KD WNAMIS +A N ++L +F++M G + E TFVAVLTAC A
Sbjct: 573 LSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHA 632
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
+LV GL+LF M + V P EHY C+VDL+ RAG+L+EA++F+ DA+V
Sbjct: 633 RLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANV 692
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH--AGLERWN-RATDLRKA 294
GA LGAC+ +G +++ + V ++L ++ CG +V+ N++ AG W+ A +R+
Sbjct: 693 WGAXLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAG---WDMEAKRVRRL 749
Query: 295 MVEAGIRKIPAYSLIE 310
+ E G++K P S+IE
Sbjct: 750 ISEXGMKKKPGCSIIE 765
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 43/301 (14%)
Query: 20 NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79
N+ R++ + S+I G+V + AI + +M+ N L+ N T+ ++ +C L +
Sbjct: 343 NLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDML-NYGLL-ANNYTFPPLIKACTTLGSS 400
Query: 80 GGLYLGKQVHGYIL-----RNEIVLS--------------------------VFMGTALI 108
L +G VH +++ + V+S V + TA+I
Sbjct: 401 SKL-IGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMI 459
Query: 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168
D YGK+G +E A +F+ M ++ +W+A++++ + KE L +F M+E G NE
Sbjct: 460 DGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNES 519
Query: 169 TFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
V+VLTACA + GL + HS + F+ PI+ +VD+ + G + A
Sbjct: 520 VLVSVLTACAHLGALAQGLWV-HSYAKQCNFDSNPILAT--ALVDMYSKCGCVESALSTF 576
Query: 227 RSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGLE 283
+ +P DA A++ ++G E+ +++ QP VL+ HA L
Sbjct: 577 QGIP-NKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLV 635
Query: 284 R 284
R
Sbjct: 636 R 636
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G +SA +FE M RD V+W S+INGF NG EA+ +++ M V
Sbjct: 177 LVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM--GSEGVE 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+LS+C L G L LG++VH Y+++ +V + AL+DLY K G A
Sbjct: 235 PDGFTMVSLLSACVEL---GALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDA 291
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + V +W ++I LA N EAL +F E++ +GL+ +EITFV VL AC+
Sbjct: 292 QKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHC 351
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G F M ++ ++P +EH+GC+VDLL RAG + +A +++R+MP P+A +
Sbjct: 352 GMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRT 411
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC IHG ++L + L+ +H G +V+LSN++A RW ++RK M+ G+
Sbjct: 412 LLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGV 471
Query: 301 RKIPAYSLIE 310
+K P YSL+E
Sbjct: 472 KKTPGYSLVE 481
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+ M A +F + ++ +W ++I GF + A+ +F M +++ P+ T+
Sbjct: 82 SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL-PDTHTFP 140
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+ + A L++ + LG+ +H ++RN F+ +L+ +Y G E A +VF+ M
Sbjct: 141 FLFKAVAKLMD---VSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIM 197
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+D WN++I+ A N EAL ++ EM +G+ + T V++L+AC + LG
Sbjct: 198 SYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG- 256
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E H + K +V ++DL + G +A++ M
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 196/316 (62%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++++A L E + +DV+SW ++I G+ + EA+ +F+ M+ +
Sbjct: 248 LIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE--T 305
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI---LRNEIVLSVF-MGTALIDLYGKVGC 116
PN+ T +S+L +CA L G + +G+ +H YI L+ +V + + T+LID+Y K G
Sbjct: 306 PNDVTMLSILPACAHL---GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGD 362
Query: 117 LERAIRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
++ A +V S + + TWNAMI A + R A +F M++ G+ ++ITFV +L+
Sbjct: 363 IDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 422
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC+ + +++LG +F SM + + P +EHYGC++DLLG +GL EA+E + +MP EPD
Sbjct: 423 ACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDG 482
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ +LL ACKIHG ++L ++L++++P++ G YV+LSNI+A +WN +R +
Sbjct: 483 VIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLL 542
Query: 296 VEAGI-RKIPAYSLIE 310
+ G+ +K+P S IE
Sbjct: 543 NDKGMKKKVPGCSSIE 558
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 8/264 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY G ++SA +F+ + +DVVSW ++I+G+ G + +A+ +FK MM V+
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTN--VK 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+T +V+S+CA G + LG+QVH +I + ++ + ALIDLY K G +E A
Sbjct: 205 PDESTMATVVSACA---QSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ + + KDV +WN +I + KEAL++F EM G N++T +++L ACA
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG---CVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+++G + + K + V + ++D+ + G + A + S F S
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381
Query: 238 LGALLGACKIHGAVDLCHEVGRRL 261
A++ +HG + ++ R+
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRM 405
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 37/247 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
AI +FE + + + + W + G + A+ ++ M+ ++ L+ PN T+ +L SC
Sbjct: 28 AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMI-SLGLL-PNFFTFPFLLKSC 85
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK-------- 125
A G+Q+HG++L+ L +++ T+LI +Y + G LE A +VF
Sbjct: 86 A---KSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVV 142
Query: 126 -----------------------SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
+ IKDV +WNAMIS A K+AL +F EM +
Sbjct: 143 SYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTN 202
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
++ +E T V++ACA++ +ELG ++ HS + ++ ++DL + G + A
Sbjct: 203 VKPDESTMATVVSACAQSGSIELGRQV-HSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261
Query: 223 KEFMRSM 229
E + +
Sbjct: 262 CELLEGL 268
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 184/314 (58%), Gaps = 10/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G+ + A +F + R++V+W ++I G+ + GC +A+ F +M+ V+
Sbjct: 223 MVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQE--RVK 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T S+LS+CA L G L GK+VH +I R I + F+ LID+Y K G L A
Sbjct: 281 PDEFTMASLLSACAQL---GSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYA 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+ WN MIS+LAS+ R EAL +F +M+ G N IT +AVL AC
Sbjct: 338 RYIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHG 397
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL +F+ L + V +EHYGC+VDLLGRAG L EA E +++MP EP+ + G+
Sbjct: 398 GFVDEGLRIFNK-LDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMV 296
LLGAC++HG ++ V + L H Y++LSNI A +RW +A +R+ M
Sbjct: 457 LLGACRVHGDAEMSRLVTDEIHRLHSVHASSNDAEYIMLSNIMAASKRWEQAEQIRRKMA 516
Query: 297 EAGIRKIPAYSLIE 310
G+ K PA S +E
Sbjct: 517 RHGVEKTPACSSLE 530
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 15/244 (6%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
DMD A+ LF M V+W ++I GF + G EA F+ P T V+
Sbjct: 137 DMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWFET-------TPPGMRTVVTW 189
Query: 70 LSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
G V+ G + ++V + RN F+ ++++ Y K G E A VF +
Sbjct: 190 TVLVHGYVSAGDMEAAREVFDRMPARN-----AFVWSSMVTGYFKAGNAEEAQAVFHRIP 244
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+++ WNA+I+ A ++AL FD M ++ ++ +E T ++L+ACA+ +E G +
Sbjct: 245 TRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKK 304
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ H + + + ++D+ + G L A+ M ++ + ++ A H
Sbjct: 305 V-HDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWK-NTECWNTMISALASH 362
Query: 249 GAVD 252
G D
Sbjct: 363 GRSD 366
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D W ++ + EA V+ + R + + +L A + L
Sbjct: 19 DPDKWAHLVREYASQSLLREAALVYARNVPR----RTHHQPLLPILLKAAATASPAEPGL 74
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
GK +H L++ + +GT ++ +Y K G L A R F M ++V ++NA+++ A+
Sbjct: 75 GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAA 134
Query: 145 NSREKEALVMFDEMK 159
AL +F M+
Sbjct: 135 AGDMDGALALFGGMR 149
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G++++A LF+ M +RD+VSW +I+G+ ++G +A+ +F+ ++ + +
Sbjct: 196 MITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLAD-GKPK 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V+ LS+C+ + G L G+ +H ++ + I L+V + TALID+Y K G LE A
Sbjct: 255 PDEITVVAALSACSQI---GALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEA 311
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ VF KD+ WNAMI+ A + ++AL +FDEM+ GL+ +ITF+ L ACA
Sbjct: 312 VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAH 371
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+++F SM ++ + P +EHYGC+V LLGRAG L A E +++M E D+ +
Sbjct: 372 AGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWS 431
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++LG+CK+HG L E+ L+ + G YV+LSNI+A + + +R M E G
Sbjct: 432 SVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKG 491
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 492 IVKEPGISTIE 502
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 43/278 (15%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y +G + ++ LF + D+ +T+ IN NG +A ++ ++ + + PNE
Sbjct: 71 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSS--QINPNE 128
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---------- 113
T+ S+L SC+ GK +H ++L+ + L ++ T L+D+Y K
Sbjct: 129 FTFSSILKSCSTKS-------GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKV 181
Query: 114 ---------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
G +E A +F M +D+ +WN MI + + +AL
Sbjct: 182 FDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDAL 241
Query: 153 VMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
++F ++ G + +EIT VA L+AC++ +E G H + + ++ ++D
Sbjct: 242 MLFQKLLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALID 300
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + G L EA P D A++ +HG
Sbjct: 301 MYSKCGSLEEAVLVFNDTP-RKDIVAWNAMITGYAMHG 337
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 184/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K + A +F+ M ++D++SWTS+I G V+ E++ +F M +
Sbjct: 248 VLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASG--FE 305
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G L G+ VH YI + I V +GT L+D+Y K GC++ A
Sbjct: 306 PDGVILTSVLSACASL---GLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K++ TWNA I LA N KEAL F+++ E G R NE+TF+AV TAC
Sbjct: 363 QRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHN 422
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G + F+ M + + P +EHYGC+VDLL RAGL+ EA E +++MP PD +LG
Sbjct: 423 GLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILG 482
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL + +G V E+ + L ++ + G YV+LSN++A ++W +R+ M + G
Sbjct: 483 ALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKG 542
Query: 300 IRKIPAYSLI 309
I K P S+I
Sbjct: 543 ISKAPGSSII 552
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 19/256 (7%)
Query: 3 DGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D YV+N GD A +FE+ML RDVVSWT +I+G+V+ G F EAI +F M
Sbjct: 143 DIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMN 202
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
V PN T+VS+L +C L G L LGK +HG + + + + A++D+Y K
Sbjct: 203 -----VEPNVGTFVSILGACGKL---GRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMK 254
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
+ A ++F M KD+ +W +MI L +E+L +F +M+ G + + +V
Sbjct: 255 CDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSV 314
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L+ACA L++ G H + + + +VD+ + G + A+ MP
Sbjct: 315 LSACASLGLLDCG-RWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMP-SK 372
Query: 234 DASVLGALLGACKIHG 249
+ A +G I+G
Sbjct: 373 NIRTWNAYIGGLAING 388
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 65/282 (23%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ +VL SCA G + +Q H ++ + +++ L+ +Y G A
Sbjct: 107 PDVYTFPAVLKSCAKFSGIGEV---RQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGA 163
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M+++DV +W +IS EA+ +F M + N TFV++L AC +
Sbjct: 164 GKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMN---VEPNVGTFVSILGACGKL 220
Query: 181 QLVELGLEL----FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP------ 230
+ LG + F + G+ VV V+D+ + +++A++ MP
Sbjct: 221 GRLNLGKGIHGLVFKCLYGEELVV-----CNAVLDMYMKCDSVTDARKMFDEMPEKDIIS 275
Query: 231 ----------------------------FEPDASVLGALLGACKIHGAVDL--------- 253
FEPD +L ++L AC G +D
Sbjct: 276 WTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYID 335
Query: 254 CH------EVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289
CH +G L+++ K CG + I G+ N T
Sbjct: 336 CHRIKWDVHIGTTLVDMYAK-CGCIDMAQRIFNGMPSKNIRT 376
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 189/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+D Y K G D++ A +F+ M +RDVVSW S+I + +NG EAI ++ M+
Sbjct: 238 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 296
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ N +VL +CA + G + GK++H ++R + +V++GT+++D+Y K G +E
Sbjct: 297 IKCNAVALSAVLLACA---HAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVE 353
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R F+ + K++ +W+AMI+ + R +EAL +F EMK GLR N ITF++VL AC+
Sbjct: 354 MASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS 413
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G +++M +F + +EHYGC+VDLLGRAG L EA ++ M +PDA++
Sbjct: 414 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 473
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+IH V+L +RL EL + G YV+LSNI+A W +R +
Sbjct: 474 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTR 533
Query: 299 GIRKIPAYSLIE 310
I K P YS E
Sbjct: 534 RIEKPPGYSSFE 545
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 132/276 (47%), Gaps = 21/276 (7%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + + V T++ +G+VRN ++ +F+ M+ + + +EA + S+ A +
Sbjct: 152 FDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVP 211
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMVIKDVCTW 135
+ G + +H I + + + ++D Y K G LE A +VF +M +DV +W
Sbjct: 212 DRG---VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSW 267
Query: 136 NAMISSLASNSREKEALVMFDEMKE--KGLRANEITFVAVLTACARAQLVELGLELFHSM 193
N+MI+ A N EA+ ++ +M G++ N + AVL ACA A ++ G + + +
Sbjct: 268 NSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQV 327
Query: 194 --LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-- 249
+G E V + +VD+ + G + A R + E + A++ +HG
Sbjct: 328 VRMGLEENVYVGT---SIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRG 383
Query: 250 --AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
A+++ E+ R L+P + VL+ HAGL
Sbjct: 384 QEALEIFTEMKRS--GLRPNYITFISVLAACSHAGL 417
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K +D A +F+N+ + +VSW ++I G+ +NGC EA+ F M ++
Sbjct: 273 LISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRN--IK 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+ + A L K +HG ++R + +VF+ TAL+D+Y K G + A
Sbjct: 331 PDSFTMVSVIPALAELSIP---RQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + V TWNAMI ++ K ++ +F EMK+ ++ N+ITF+ L+AC+ +
Sbjct: 388 RKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHS 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM + + P M+HYG +VDLLGRAG L++A +F++ MP +P +V GA
Sbjct: 448 GLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGACKIH VDL + + +L P G +V+L+NI+A W + +R M ++G+
Sbjct: 508 MLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGL 567
Query: 301 RKIPAYSLIE 310
+K P SL+E
Sbjct: 568 QKTPGCSLVE 577
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 10/231 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A ++F+ M R VVSW S+I+G+V++G A+ +F+ M+ V+
Sbjct: 172 LVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG--VQ 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T + L +CA L G L GK VH + + ++ V + +LI +Y K ++ A
Sbjct: 230 PTNVTVMGALHACADL---GDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK++ K + +WNAMI A N EAL F EM+ + ++ + T V+V+ A A
Sbjct: 287 ADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAEL 346
Query: 181 QLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + ++ +F + V +M +VD+ + G + A++ M
Sbjct: 347 SIPRQAKWIHGLVIRRFLDKNVFVMT---ALVDMYAKCGAIHTARKLFDMM 394
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 108/199 (54%), Gaps = 6/199 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K ++ A +F+ M +RD+V W ++I+G+ +NG A+ + M + R
Sbjct: 71 VVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGH--R 128
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS+L + A + L +G VHGY+LR V + TAL+D+Y K G + A
Sbjct: 129 PDSITIVSILPAVA---DTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIA 185
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V +WN+MI + + A+++F +M ++G++ +T + L ACA
Sbjct: 186 RVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADL 245
Query: 181 QLVELGLELFHSMLGKFEV 199
+E G + H ++ + ++
Sbjct: 246 GDLERG-KFVHKLVDQLKL 263
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ G+ ++ A+ F M + VRP + +L C + L GK++HG
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDS--VRPVVYNFTYLLKLCG---DNSDLKRGKEIHGS 55
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++ + ++F T ++++Y K + A +F M +D+ WN MIS A N K A
Sbjct: 56 VITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVA 115
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
L++ M E+G R + IT V++L A A +L+ +G+ + H + + ++ +VD
Sbjct: 116 LMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAV-HGYVLRAGFESLVNVSTALVD 174
Query: 212 LLGRAGLLSEAKEFMRSM 229
+ + G +S A+ M
Sbjct: 175 MYSKCGSVSIARVIFDGM 192
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 199/312 (63%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A +F + +RDVV+ T+II+G+ + G EA+ +F+ + + +
Sbjct: 204 LLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL--QIEGMN 261
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY SVL++ +GL L GKQVH ++LR+ V + +LID+Y K G + A
Sbjct: 262 SNSVTYASVLTALSGL---AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 318
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
R+F SM + +WNAM+ + + +E L +F M+E+ ++ + IT++AVL+ C+
Sbjct: 319 RRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSH 378
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
QL ++GLE+F++M+ GK + P + HYGCVVDLLGRAG + EA +F++ MPF P A++
Sbjct: 379 GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIW 438
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLG+C++H V++ VG++LLEL+P++ G YV+LSN++A +W ++R M E
Sbjct: 439 GSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEK 498
Query: 299 GIRKIPAYSLIE 310
+ K P S +E
Sbjct: 499 AVTKEPGRSWVE 510
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 133/250 (53%), Gaps = 18/250 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +R+VVSWT++I+ + + G EA+ +F M+ + PN T+ ++L+SC G
Sbjct: 119 MFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSD--TEPNHFTFATILTSCYGS 176
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ G G+Q+H ++ +F+G++L+D+Y K G + A VF + +DV
Sbjct: 177 L---GFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACT 233
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML-- 194
A+IS A ++EAL +F +++ +G+ +N +T+ +VLTA + + G ++ +L
Sbjct: 234 AIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS 293
Query: 195 GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLC 254
G++ V ++ ++D+ + G + A+ SMP S L+G K
Sbjct: 294 GQYSYVVLL---NSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK-------- 342
Query: 255 HEVGRRLLEL 264
H + R +LEL
Sbjct: 343 HGMAREVLEL 352
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y S+L+ C V++ + G++VH ++++ + SV++ T LI LY K CL A +F
Sbjct: 65 YDSILNEC---VSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFD 121
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++V +W AMIS+ + EAL +F EM N TF +LT+C + E
Sbjct: 122 EMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFET 181
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ HS+ K M ++D+ ++G + +A +P
Sbjct: 182 GRQI-HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP 225
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 190/305 (62%), Gaps = 8/305 (2%)
Query: 9 GDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
G +SA +F+ + +R++VSW S++NGF NG E + +F+ M+ +VN + P+ T
Sbjct: 167 GLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREML-DVNFM-PDGFTV 224
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VSVL++ A + G L LG++VH Y+ + +V + +G ALIDLY K G +E A RVF+
Sbjct: 225 VSVLTASAEI---GALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEE 281
Query: 127 M-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M + V +W ++I LA N KEAL +F M+ + L EIT V VL AC+ LV+
Sbjct: 282 MGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDD 341
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245
G F+ M ++ + P +EH GC+VDLLGRAG + EA +++ +MP EP+A V LLGAC
Sbjct: 342 GFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGAC 401
Query: 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305
+H ++L RL+EL P H G YV+LSN++A + RW LRK MV+ G+RK P
Sbjct: 402 AMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPG 461
Query: 306 YSLIE 310
SL+E
Sbjct: 462 RSLVE 466
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ TY +L +CA L++ L G+++H +N + VF+ +L+ LYG G
Sbjct: 113 LAPPDTHTYPPLLQACARLLS---LRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLF 169
Query: 118 ERAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
E A RVF + + +++ +WN+M++ A+N R E L +F EM + + T V+VLT
Sbjct: 170 ESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLT 229
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
A A + LG + H L K +V ++DL + G + +A+ M
Sbjct: 230 ASAEIGALALGRRV-HVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEM 282
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ID Y K G ++ A +FE M +R VVSWTS+I G NG EA+ +F +M LV
Sbjct: 262 LIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKEALELF-GIMEREKLV 320
Query: 60 RPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
P E T V VL +C+ GLV++G +Y + Y I + ++DL G+ G +
Sbjct: 321 -PTEITMVGVLYACSHCGLVDDGFMYFNRMKEEY----NIAPRIEHLGCMVDLLGRAGKV 375
Query: 118 ERAIRVFKSMVIK-DVCTWNAMISSLASNSR 147
+ A +M ++ + W ++ + A + +
Sbjct: 376 KEAYDYILTMPLEPNAVVWRTLLGACAMHKK 406
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 196/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +FE + +RDVVS T+II+G+ + G EA+ +F + +
Sbjct: 152 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG--MS 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N TY S+L++ +GL L GKQVH ++LR E+ V + +LID+Y K G L A
Sbjct: 210 SNYVTYASLLTALSGL---AALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYA 266
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
++F +M ++ V +WNAM+ + + + E + +F M+E+ ++ + +TF+AVL+ C+
Sbjct: 267 RKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSH 326
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
L + GLE+F M+ G E+ +EHYGCV+DLLGRAG + EA E ++ MPFEP A++
Sbjct: 327 GGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIW 386
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC++H ++ VG RLLE++P++ G YV+LSN++A RW ++R+ M+E
Sbjct: 387 GSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEK 446
Query: 299 GIRKIPAYSLIE 310
+ K P S IE
Sbjct: 447 AVIKEPGRSWIE 458
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 160/298 (53%), Gaps = 11/298 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + A +F+ M +R+VVSWT++I+G+ + G EA+ +F M+ + PNE
Sbjct: 55 YTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSD--TEPNEF 112
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VLSSC G G LG+Q+H +I + +F+G++L+D+Y K G + A VF
Sbjct: 113 TFATVLSSCTGF---SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVF 169
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +DV + A+IS A ++EAL +F ++ +G+ +N +T+ ++LTA + ++
Sbjct: 170 ECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALD 229
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G ++ HS + + E+ + ++D+ + G L+ A++ +MP S L+G
Sbjct: 230 HGKQV-HSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGY 288
Query: 245 CKIHGAVDLCH--EVGRRLLELQPKHCGRYVVLSNI-HAGLERWNRATDLRKAMVEAG 299
K +++ ++ R +++P VLS H GLE ++ ++ M+ G
Sbjct: 289 SKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLE--DKGLEMFDEMMNGG 344
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y +L+ C VN+ + G++VH ++++ + V++ T LI LY K CL A VF
Sbjct: 13 YNMLLNEC---VNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFD 69
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M ++V +W AMIS + EAL +F +M NE TF VL++C EL
Sbjct: 70 EMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFEL 129
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ HS + K + ++D+ +AG + EA+ +P
Sbjct: 130 GRQI-HSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+V+ GDM++A +F+ M +RD+VSW S++ + + GC A+ M V V+
Sbjct: 305 MVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVK 364
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS++S G N G L G+ VHG ++R ++ F+ +ALID+Y K G +ERA
Sbjct: 365 PDRVTMVSLIS---GAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERA 421
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK+ KDV W +MI+ A + ++AL +F M+E+ + N++T +AVLTAC+ +
Sbjct: 422 FMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHS 481
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS-MPFEPDASVLG 239
LVE GL +F+ M KF P EHYG +VDLL RAG L EAK+ +++ MP P S+ G
Sbjct: 482 GLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMPMRPSQSMWG 541
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++L AC+ ++ LL+L+P+ G YV+LSNI+A + RW + R+AM G
Sbjct: 542 SILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRG 601
Query: 300 IRKIPAYSLI 309
++K YS +
Sbjct: 602 VKKTAGYSSV 611
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 12/204 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G + A +F M + DV S+ +I G+ + G EA+ ++ M+ + +
Sbjct: 171 LVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDG--IE 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
P+E T + +L C L + + LGK VHG+I R V S + + AL+D+Y K
Sbjct: 229 PDEYTLLGLLVCCGHLSD---IRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESG 285
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTAC 177
A R F ++ KD+ +WN M+ + A +FD+M ++ L + N + F C
Sbjct: 286 LAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGC 345
Query: 178 ARAQLVELGLELFHSMLGKFEVVP 201
+ + ELF+ ML +V P
Sbjct: 346 DQRAV----RELFYEMLIVEKVKP 365
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 10 DMDSAILLFENMLKR-DVVSWTSIINGFV--RNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++D A LLF + +V + ++I+ +N CFG ++ +M+ V P+ T+
Sbjct: 82 NLDLAKLLFLDFTPNPNVFVYNTMISAVSSSKNECFG----LYSSMIRY--RVSPDRQTF 135
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ ++ + + L KQ+H +I+ + + L ++ +L+ Y ++G L A +VF
Sbjct: 136 LHLMKASSFLSEV------KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFA 189
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M DV ++N MI A EAL ++ +M G+ +E T + +L C + L
Sbjct: 190 IMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRL 249
Query: 186 G 186
G
Sbjct: 250 G 250
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M ++VVSWT+++ G+ +NG EA+ VF +M N +
Sbjct: 311 LVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNG--IE 368
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q H L + ++ + + ALI LYGK G +E +
Sbjct: 369 PDDFTLGSVISSCANLAS---LEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDS 425
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +D +W A++S A + E + +F+ M +GL+ + +TF+AVL+AC+RA
Sbjct: 426 NQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRA 485
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SML ++P +HY C++DL GRAG L EAK F+ MPF PD+
Sbjct: 486 GLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWAT 545
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+++G ++ LLEL P++ Y++LS+I+A +W+ LR+ M E G
Sbjct: 546 LLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGA 605
Query: 301 RKIPAYSLIE 310
RK P +S I+
Sbjct: 606 RKEPGFSWIK 615
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 145/277 (52%), Gaps = 7/277 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G +++G + + LF M +RD +SWT++I G ++NG EA+ +F++M +
Sbjct: 210 MITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM--RQEGMA 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ SVL++C GL L GK++H I+R+ +VF+G+AL+D+Y K + A
Sbjct: 268 MDQYTFGSVLTACGGLR---ALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M K+V +W AM+ N +EA+ +F +M+ G+ ++ T +V+++CA
Sbjct: 325 EAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANL 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + FH ++ + ++ L G+ G + ++ + M F + S
Sbjct: 385 ASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTAL 443
Query: 241 LLGACKIHGAVDLCHEVGRRLLE-LQPKHCGRYVVLS 276
+ G + A + R L++ L+P VLS
Sbjct: 444 VSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLS 480
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 40/227 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
M+ Y K+GD+ + +F M RD VSW S+I+G+V G EA+ + +MM G +NL
Sbjct: 77 MLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL 136
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL- 117
R +T + ++SS +G + LG+Q+HG I++ VF+G++L+D+Y K+G +
Sbjct: 137 NRITFSTMLLLVSS------QGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVS 190
Query: 118 ----------ERAI--------------------RVFKSMVIKDVCTWNAMISSLASNSR 147
ER + R+F M +D +W MI+ L N
Sbjct: 191 VASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGL 250
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
E EA+ +F +M+++G+ ++ TF +VLTAC + ++ G E+ H+++
Sbjct: 251 EAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEI-HTLI 296
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
F ++ Y K G L +F M +D +WN++IS EA+ ++ M +
Sbjct: 72 FSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131
Query: 162 G-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
G L N ITF +L + V+LG ++ H + KF + +VD+ + GL+S
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQI-HGQIVKFGFGAYVFVGSSLVDMYAKMGLVS 190
Query: 221 EAKE 224
A +
Sbjct: 191 VASQ 194
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DGY K GD+D A +F+++ RDVV+WT++I G+ +NG +A+ +F+ M+ +
Sbjct: 352 LLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP--K 409
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +VLS + L L GKQ+H +R E V SV +G ALI +Y + G ++ A
Sbjct: 410 PNNYTLAAVLSVISSL---ASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDA 466
Query: 121 IRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++F + +D TW +MI SLA + EA+ +F++M L+ + IT+V VL+AC
Sbjct: 467 RKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTH 526
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G F+ M + P HY C++DLLGRAGLL EA F+R+MP EPD G
Sbjct: 527 VGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWG 586
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL +C++H VDL +LL + P + G Y+ L+N + +W A +RK+M +
Sbjct: 587 SLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKA 646
Query: 300 IRKIPAYSLIE 310
++K +S ++
Sbjct: 647 VKKEQGFSWVQ 657
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 151/320 (47%), Gaps = 45/320 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +++ D A+ LF+ M D+VSW SII G+ G A+ F M+ + +L +
Sbjct: 217 MISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL-K 275
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SVLS+CA N L LGKQ+H +I+R ++ ++ +G ALI +Y K G +E A
Sbjct: 276 PDKFTLGSVLSACA---NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVA 332
Query: 121 IRV---------------------------------FKSMVIKDVCTWNAMISSLASNSR 147
R+ F S+ +DV W AMI A N
Sbjct: 333 HRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+ALV+F M +G + N T AVL+ + ++ G +L H++ + E V +
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL-HAVAIRLEEVSSVSVGN 451
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLE 263
++ + R+G + +A++ + D +++ + HG A++L ++ R +
Sbjct: 452 ALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLR--IN 509
Query: 264 LQPKHCGRYVVLSN-IHAGL 282
L+P H VLS H GL
Sbjct: 510 LKPDHITYVGVLSACTHVGL 529
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 14/261 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + K G++DSA +F+ + + D VSWT++I G+ G F A+ F M+ + +
Sbjct: 85 ILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSG--IS 142
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+ +VL+SCA L +GK+VH ++++ V + +L+++Y K G A
Sbjct: 143 PTQFTFTNVLASCAA---AQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMA 199
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +KD TWN MIS + AL +FD+M + + +++ +++T
Sbjct: 200 KVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDI----VSWNSIITGYCHQ 255
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG- 239
LE F ML + P G V+ L K+ + + D + G
Sbjct: 256 GYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQ-IHAHIVRADVDIAGA 314
Query: 240 ---ALLGACKIHGAVDLCHEV 257
AL+ GAV++ H +
Sbjct: 315 VGNALISMYAKSGAVEVAHRI 335
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 36/155 (23%)
Query: 83 YLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
++G+ +H I+++ + L VF+ L++LY K G A R+F M +K +WN ++S+
Sbjct: 29 FIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSA 88
Query: 142 LASNSREKEALVMFDEMKE-------------------------------KGLRANEITF 170
A A +FDE+ + G+ + TF
Sbjct: 89 HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTF 148
Query: 171 VAVLTACARAQLVELGLELFHSM---LGKFEVVPI 202
VL +CA AQ +++G ++ HS LG+ VVP+
Sbjct: 149 TNVLASCAAAQALDVGKKV-HSFVVKLGQSGVVPV 182
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 182/312 (58%), Gaps = 7/312 (2%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
D Y K G + A +F+ M +R++ +W + ++ V G + +A+ F + + P
Sbjct: 150 FDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAF--IEARKEGIEP 207
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ SVLS+CAGL L +GK VH ++ +V ++F+G+AL+D+YGK G +E A
Sbjct: 208 TDFMVSSVLSACAGL---SVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAE 264
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--ANEITFVAVLTACAR 179
R F M +++ TWNAMI A + A+ +FDEM R N +TFV VL+AC+R
Sbjct: 265 RAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSR 324
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V +G+E+F SM G++ + P EHY CVVDLLGRAG++ +A +F++ MP P SV G
Sbjct: 325 AGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWG 384
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGA K+ G +L L EL P G +V+LSN+ A RW AT +RK M + G
Sbjct: 385 ALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVG 444
Query: 300 IRKIPAYSLIEA 311
I+K S I A
Sbjct: 445 IKKGAGCSWITA 456
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 7/253 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K +SA LL R VV+WT++I G V+NG F A+ F NM + ++
Sbjct: 48 LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNM--RRDSIQ 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+ + L + +GKQVH ++ + VF+G + D+Y K G E A
Sbjct: 106 PNDFTFPCAFKASGSLRSP---LVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEA 162
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +++ TWNA +S+ R +AL F E +++G+ + +VL+ACA
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGL 222
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++E+G + H++ K VV + +VD+ G+ G + +A+ MP E + A
Sbjct: 223 SVLEVGKSV-HTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNA 280
Query: 241 LLGACKIHGAVDL 253
++G G D+
Sbjct: 281 MIGGYAHQGQADM 293
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 7/144 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A F+ M +R++V+W ++I G+ G A+ +F M + V
Sbjct: 250 LVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVA 309
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+V VLS+C AG VN G+ + + + G R I ++DL G+ G +E
Sbjct: 310 PNYVTFVCVLSACSRAGSVNV-GMEIFESMRG---RYGIEPGAEHYACVVDLLGRAGMVE 365
Query: 119 RAIRVFKSMVIKD-VCTWNAMISS 141
+A + K M I+ V W A++ +
Sbjct: 366 QAYQFIKKMPIRPTVSVWGALLGA 389
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 169/281 (60%), Gaps = 5/281 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV +G+++ A LFE M +++VVSWT++INGF + G + AI + M+ ++
Sbjct: 233 LIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKG--LK 290
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +VLS+C+ G L G ++HGYIL N I L +GTAL+D+Y K G L+ A
Sbjct: 291 PNEYTIAAVLSACS---KSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M KD+ +W AMI A + R +A+ F +M G + +E+ F+AVLTAC +
Sbjct: 348 ATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNS 407
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+LGL F SM + + P ++HY VVDLLGRAG L+EA E + +MP PD + A
Sbjct: 408 SEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAA 467
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281
L ACK H V + LLEL P+ CG Y+ L HA
Sbjct: 468 LYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHAS 508
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 48/193 (24%)
Query: 1 MIDGYVKNGDMDSAILLFEN----MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
++D Y K G + A +FE + K ++ W +ING+ R A +F++M
Sbjct: 167 LVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSM---- 222
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
P N G + LI Y G
Sbjct: 223 ----PER--------------NSGSW----------------------STLIKGYVDSGE 242
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L RA ++F+ M K+V +W +I+ + + A+ + EM EKGL+ NE T AVL+A
Sbjct: 243 LNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSA 302
Query: 177 CARAQLVELGLEL 189
C+++ + G+ +
Sbjct: 303 CSKSGALGSGIRI 315
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+ ++S++ +C + + VH ILR VLS + L+ + + +
Sbjct: 27 PDESHFISLIHACKDTASL------RHVHAQILRRG-VLSSRVAAQLVSCSSLLKSPDYS 79
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F++ ++ NA+I L N+R + ++ F M G++ + +TF VL + ++
Sbjct: 80 LSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKL 139
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG L + L F +VD+ + G L A + P
Sbjct: 140 GFRWLGRALHAATLKNFVDCDSFVRLS-LVDMYAKTGQLKHAFQVFEESP 188
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 188/313 (60%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ID Y K GD +A F ML ++VVSW ++I R+G EA+ F+ M V
Sbjct: 195 LIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSGDTREALSWFREMQ-RSGCV 253
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP++AT+V+VL +CA L G L G+ VH Y++ +V +G AL+D+Y K G ++
Sbjct: 254 RPDDATFVAVLGACADL---GALDAGRWVHAYMM-GRHTKAVVVGNALLDMYAKCGAVDG 309
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF +M +DV T+ +MIS LA + R +EAL + +M+ G+R N +TF+ VL+AC
Sbjct: 310 AKEVFDAMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRAGVRPNAVTFLGVLSACCH 369
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL F+++ V P +EHYGCVVD+LGRAG L EA+E + MP PDA + G
Sbjct: 370 AGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLDEAEELVARMPARPDALIWG 429
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LL AC+ HG V V RR+ ++ G YV++SN++A R +A LRK M
Sbjct: 430 SLLSACRAHGHVARAERVMRRMADVDGDLADAGDYVLMSNMYASKGRHGKAVQLRKQMRR 489
Query: 298 AGIRKIPAYSLIE 310
+ K+P SLIE
Sbjct: 490 GRMDKVPGCSLIE 502
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 12/247 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ G A LFE DVVSWT+++ G R G F EA +F M V
Sbjct: 100 YLACGQGAVARALFERGAP-DVVSWTAMVTGHTRLGLFEEAAALFLAMADGVA------V 152
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V+ ++ A G L L ++ H +L + L V ALID+Y K G A R F
Sbjct: 153 DAVAAAAAFAACAGAGDLGLARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCF 212
Query: 125 KSMV-IKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQL 182
+ M+ K+V +WN MI++ A + +EAL F EM+ G +R ++ TFVAVL ACA
Sbjct: 213 RRMLPAKNVVSWNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGA 272
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
++ G + M+G+ ++ + ++D+ + G + AKE +MP D +++
Sbjct: 273 LDAGRWVHAYMMGRHTKAVVVGN--ALLDMYAKCGAVDGAKEVFDAMPRR-DVYTYTSMI 329
Query: 243 GACKIHG 249
+HG
Sbjct: 330 SGLAMHG 336
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++ Y G +SA +F+ + L+R++VSW S++NGF NG E + +F+ + +L
Sbjct: 161 LVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETL-EADL 219
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ P+ T VSVL++CA + G L LG++VH + + +V + +G ALIDLY K G +E
Sbjct: 220 M-PDGFTIVSVLTACAEI---GALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVE 275
Query: 119 RAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +VF+ M V + V +W ++I LA N K+AL +F M+ + L +IT V VL AC
Sbjct: 276 DAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYAC 335
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ LV+ G F+ M K+ + P +EH GC+VDLLGRAG + EA ++ +MP EP+A V
Sbjct: 336 SHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVV 395
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGAC +H ++L RL+EL P H G YV+LSN++A + RW A LRK M
Sbjct: 396 WRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMAT 455
Query: 298 AGIRKIPAYSLIE 310
G+RK P +SL+E
Sbjct: 456 HGVRKNPGHSLVE 468
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ TY +L +C L+ L G+ +H +N +V VF+ +L+ YG G
Sbjct: 115 LAPPDTHTYPPLLQACTRLL---ALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLF 171
Query: 118 ERAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
E A RVF + + +++ +WN++++ A+N R E L +F E E L + T V+VLT
Sbjct: 172 ESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLT 231
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
ACA + LG + H K +V ++DL + G + +A + M
Sbjct: 232 ACAEIGALTLGRRV-HVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEM 284
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 186/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY K+ +++ A ++F M++++V++W +I + +NG EAI +F + + +
Sbjct: 325 ILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIW 382
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P TY +VL++C + + L LG+Q H ++L+ VF+G +L+D+Y K
Sbjct: 383 PTHYTYGNVLNACGNIAD---LQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G ++ +VF+ M +D +WNAMI A N R K+AL +F+ M + +T + VL
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC + LV+ G FHSM + P +HY C+VDLLGRAG L EA+E + MP EPD
Sbjct: 500 SACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPD 559
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + +LLGAC++H V+L RL EL P++ G YV+LSN++A + +W +R++
Sbjct: 560 SVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRS 619
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S IE
Sbjct: 620 MKDRGVSKQPGCSWIE 635
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 50/302 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M +R+VVSW S+I + +NG GEA+ +F MM
Sbjct: 192 LVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAG--FS 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGKVG 115
P+E T SV+S+CAGL + G+QVH ++ LR+++VL+ AL+D+Y K G
Sbjct: 250 PDEVTLSSVMSACAGLAAD---REGRQVHAHMVKCDRLRDDMVLN----NALVDMYAKCG 302
Query: 116 ------CL-------------------------ERAIRVFKSMVIKDVCTWNAMISSLAS 144
C+ E A VF MV K+V WN +I++ A
Sbjct: 303 RTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 362
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVP 201
N E+EA+ +F ++K + T+ VL AC ++LG + +L +F+ P
Sbjct: 363 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGP 422
Query: 202 IMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
+ + +VD+ + G + + + M + S ++G + A D H R
Sbjct: 423 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFER 482
Query: 260 RL 261
L
Sbjct: 483 ML 484
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 7/248 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG--CFGEAICVFKNMMGNVNL 58
++ Y + G D A LFE + D S+ +++ R+G +A+ M + +
Sbjct: 89 LLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFV 148
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ N ++ S LS+CA E G+QVHG + R+ V + +AL+D+Y K E
Sbjct: 149 L--NAYSFASALSACAA---EKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPE 203
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF +M ++V +WN++I+ N EAL++F EM G +E+T +V++ACA
Sbjct: 204 DARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACA 263
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
G ++ M+ + M +VD+ + G EA+ SMP S
Sbjct: 264 GLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSET 323
Query: 239 GALLGACK 246
L G K
Sbjct: 324 SILTGYAK 331
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ H IL++ + F+ L+ Y ++G L A RVF + +++ ++NA++S+ A
Sbjct: 36 ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R EA +F+ + + ++ ++ AV+ A AR
Sbjct: 96 LGRPDEARALFEAIPDP----DQCSYNAVVAALAR 126
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 95 NEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR--EKEA 151
+EI L + F AL+ Y ++G + A +F+++ D C++NA++++LA + R +A
Sbjct: 76 DEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADA 135
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
L M N +F + L+ACA + G E H ++ + + +VD
Sbjct: 136 LRFLAAMHADDFVLNAYSFASALSACAAEKDSRTG-EQVHGLVARSPHADDVHIRSALVD 194
Query: 212 LLGRAGLLSEAKEFMRSMP 230
+ + +A+ +MP
Sbjct: 195 MYAKCERPEDARRVFDAMP 213
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 189/311 (60%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y++ G ++ A ++F+ M +RD VSW S+I G+V+ + A+ +F+ M + V
Sbjct: 328 LIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREM--EIANVE 385
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +SVL +CA G L +G+++H + + E + ++ AL+D+Y K G L A
Sbjct: 386 ATDITLISVLGACA---ETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 442
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD--EMKEKGLRANEITFVAVLTACA 178
VF + +K + WNAMI SLA + +EAL +F EM G R N +TF+ VL AC+
Sbjct: 443 WEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACS 502
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ G F+ M+ +++++P ++HYGC+VDLL R GLL EA +++MPFE ++ +
Sbjct: 503 HKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLW 562
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
LLGAC++H VDL E ++L +++P G YV+LSNI+A +RWN +R M+ +
Sbjct: 563 RTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGS 622
Query: 299 GIRKIPAYSLI 309
G+ K P S I
Sbjct: 623 GVPKKPGSSHI 633
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 131/325 (40%), Gaps = 83/325 (25%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A +FE+ + ++I + ++ +AI ++ N M + ++ + TY
Sbjct: 160 GSLVYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLY-NFMHRKD-IKSDHFTYPF 217
Query: 69 VLSSCAGLV--NEGGLYL--------GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
L +CA ++ NEG + G ++H + R + F+ +L+ LY + G L+
Sbjct: 218 GLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLD 277
Query: 119 RAIRVFKSMVIKDVCTWNAMISSL-------ASNS------------------------R 147
A VF M K + +WN MIS+ +++S +
Sbjct: 278 LARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGK 337
Query: 148 EKEALVMFDEMKEK-------------------------------GLRANEITFVAVLTA 176
++A V+F EM E+ + A +IT ++VL A
Sbjct: 338 IEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGA 397
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
CA +E+G ++ H L + E +E Y +VD+ + G L+ A E + +
Sbjct: 398 CAETGALEIGRKI-HLSLKQREYK--IEGYLSNALVDMYAKCGHLNLAWEVFSELKMK-H 453
Query: 235 ASVLGALLGACKIHGAVDLCHEVGR 259
S A++ + +HG C E R
Sbjct: 454 ISCWNAMIVSLAVHG---YCEEALR 475
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 190/340 (55%), Gaps = 33/340 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-------- 52
M+D YVK G ++ A LF M ++D+VSWT++++G + G + EA C+F M
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAW 374
Query: 53 ----------------------MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHG 90
M +P+E T + L + A L G + G +H
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQL---GAIDFGHWIHV 431
Query: 91 YILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
YI +++I L+ + T+L+D+Y K G L +A+ VF ++ KDV W+AMI +LA + K
Sbjct: 432 YIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKA 491
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
AL +F M E ++ N +TF +L AC A LV G +LF M + +VP ++HY CVV
Sbjct: 492 ALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVV 551
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270
D+ GRAGLL +A F+ MP P A+V GALLGAC HG V+L + LLEL+P + G
Sbjct: 552 DIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHG 611
Query: 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+V+LSNI+A W + ++LRK M ++ ++K P S I+
Sbjct: 612 AFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSID 651
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 46/319 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y +G D A +F NM +DVVSW ++IN F G +A+ +F+ M + V+
Sbjct: 214 LINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEM--EMKDVK 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVLS+CA ++ L G+ + YI N + + A++D+Y K GC+ A
Sbjct: 272 PNVITMVSVLSACAKKID---LEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDA 328
Query: 121 IRVFKSMVIKDVCT-------------------------------WNAMISSLASNSREK 149
+F M KD+ + WNA+IS+ N + +
Sbjct: 329 KDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPR 388
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
AL +F EM+ K + +E+T + L A A+ ++ G H + K ++
Sbjct: 389 VALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHDINLNCHLATS 447
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268
++D+ + G L++A E ++ D V A++GA ++G ++ +LE K
Sbjct: 448 LLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIK- 505
Query: 269 CGRYVVLSNI-----HAGL 282
V +NI HAGL
Sbjct: 506 -PNAVTFTNILCACNHAGL 523
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 12/242 (4%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F + + ++ W ++I G+ + ++ +F +M+ + + PN+ T+ + + + L
Sbjct: 128 VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEF-PNKFTFPFLFKAASRL 186
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L+LG +HG +++ + +F+ +LI+ YG G + A RVF +M KDV +WN
Sbjct: 187 ---KVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWN 243
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMI++ A +AL++F EM+ K ++ N IT V+VL+ACA+ ++ LE +
Sbjct: 244 AMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAK----KIDLEFGRWICSY 299
Query: 197 FEVVPIMEHY---GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
E EH ++D+ + G +++AK+ M + S L G K+ G D
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL-GNYDE 358
Query: 254 CH 255
H
Sbjct: 359 AH 360
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 5/170 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYG--KVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+H ++LR + + L+ Y CL A VF + ++ WN +I A
Sbjct: 89 KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148
Query: 144 SNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
S+S ++ ++F M N+ TF + A +R +++ LG + H M+ K +
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLG-SVLHGMVIKASLSSD 207
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ +++ G +G A +MP + D A++ A + G D
Sbjct: 208 LFILNSLINFYGSSGAPDLAHRVFTNMPGK-DVVSWNAMINAFALGGLPD 256
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENML-KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI Y +NG++D A+ LFE ++D V+W S+I+G++ +G EA+ ++ M + +
Sbjct: 366 MISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITM--HRLSI 423
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ ++T+ ++ +C+ L G L+ G+ +H ++++ +V++GT+LID+Y K G +
Sbjct: 424 QQTQSTFSALFHACSCL---GSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIME 480
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A F S+ +V W A+I+ A + EA+ +FD M E+GL N TFV VL+AC+R
Sbjct: 481 AQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSR 540
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+++FHSM + V P +EHY CVVDLLGR+G + EA+EF++ MP E D V G
Sbjct: 541 AGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWG 600
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC +++ V ++ PK YV+LSNI+AGL RW +RK +
Sbjct: 601 ALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFK 660
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 661 VKKDPGCSWIE 671
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 16/245 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN--GCFGEAICVFKNMMGNVNL 58
M+ GYV MD A+ +F M +RDVV+WT++I+GF +N GC G+A+ +F+ MM +
Sbjct: 170 MLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGC-GKALEIFRLMMRS-GE 227
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PNE T+ V+ +C L G L +G+ VHG +++ + +G AL++ Y + ++
Sbjct: 228 TTPNEFTFDCVVRACGRL---GILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAID 284
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+RV K +V + N++I L S R ++A ++F+ M E N +++ ++ A
Sbjct: 285 DALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE----MNPVSYNLMIKGYA 340
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ LF M + + ++ + R G + +A E E D
Sbjct: 341 VGGQMDDSKRLFEKMPCR-----TIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 395
Query: 239 GALLG 243
+++
Sbjct: 396 NSMIS 400
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 19/248 (7%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y K +D A LF+ M +R VVSW ++I+ + ++G F EA+ + +M + + ++
Sbjct: 39 ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM--HRSHMKL 96
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+E+T+ SVLS CA L L GK +H +L++ +G+AL+ Y + A
Sbjct: 97 SESTFSSVLSVCARL---RCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEAR 153
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT----AC 177
RVF +V ++ W+ M+ + + +AL +F +M + + A T ++ + C
Sbjct: 154 RVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVA-WTTLISGFSKNGDGC 212
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPD 234
+A LE+F M+ E P + CVV GR G+LS + + E D
Sbjct: 213 GKA------LEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 266
Query: 235 ASVLGALL 242
S+ GAL+
Sbjct: 267 PSIGGALV 274
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A +F+ + R+ V WTS+I G+ ++ F EAI +F+ M +
Sbjct: 272 LIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM--QIGGFA 329
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ AT VLS+C + G L G+ +H Y RN I + + ALI +Y K G +++A
Sbjct: 330 ADAATIACVLSACG---HWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKA 386
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ +F + D+ +W+A+IS LA N +AL +F +M+ +R NEITF+ VL AC
Sbjct: 387 LEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNH 446
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ GL F++M + + P +EHYGC+VDLLGRA LL EA++F+R++P +PD +
Sbjct: 447 GGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWR 506
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ HG ++L +++ EL+P+ CG V+LSN++A RW +RK M
Sbjct: 507 SLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQR 566
Query: 300 IRKIPAYSLIE 310
I+K P S +E
Sbjct: 567 IKKQPGCSFVE 577
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 8/254 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I + G +++A +F+ + L RDVVSW S+I+G++++ + A+ VF ++G+ +L
Sbjct: 168 LISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSL 227
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+E T VS LS C L G L LGK++HG + VL VF+G++LID+Y K G +E
Sbjct: 228 -SPDEVTLVSALSVCGRL---GLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIE 283
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF + ++ W +MI+ A + KEA+ +F EM+ G A+ T VL+AC
Sbjct: 284 DARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACG 343
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ G H + + + ++ + + G + +A E + +PD
Sbjct: 344 HWGALAQG-RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLT-QPDIFSW 401
Query: 239 GALLGACKIHGAVD 252
A++ ++G D
Sbjct: 402 SAVISGLAMNGESD 415
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 11/231 (4%)
Query: 5 YVKNGDMDSAI--LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62
Y + D D A LF + K +V SW + + R+ E I ++ M+ N L P+
Sbjct: 69 YSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTL--PD 126
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
++ VL +CA L L+ G+++H L+ + L VF+ ALI + G +E A
Sbjct: 127 NYSFPFVLKACARL---SLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARA 183
Query: 123 VFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
VF + +++DV +WN+MIS + R + AL +F E+ G L +E+T V+ L+ C R
Sbjct: 184 VFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGR 243
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L++LG ++ G V+ + ++D+ + G + +A++ +P
Sbjct: 244 LGLLDLGKKIHGLFTGSGFVLDVFVG-SSLIDMYSKCGQIEDARKVFDRIP 293
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 186/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+++ + A+ +F+ + R+ V WTS+I G+ ++ F EAI +F+ M +
Sbjct: 84 MISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM--QIGGFA 141
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ AT VLS+C + G L G+ +H Y RN I + + ALI +Y K G +++A
Sbjct: 142 ADAATIACVLSACG---HWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKA 198
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ +F + D+ +W+A+IS LA N +AL +F +M+ +R NEITF+ VL AC
Sbjct: 199 LEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNH 258
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ GL F++M + + P +EHYGC+VDLLGRA LL EA++F+R++P +PD +
Sbjct: 259 GGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWR 318
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ HG ++L +++ EL+P+ CG V+LSN++A RW +RK M
Sbjct: 319 SLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQR 378
Query: 300 IRKIPAYSLIE 310
I+K P S +E
Sbjct: 379 IKKQPGCSFVE 389
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ VL +CA L L+ G+++H L+ + L VF+ ALI + G +E A
Sbjct: 8 PDNYSFPFVLKACARL---SLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAA 64
Query: 121 IRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF + +++DV +WN+MIS + R + AL +FD + + N + + +++ A
Sbjct: 65 RAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHR----NTVCWTSMIAGYA 120
Query: 179 RAQLVELGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPD 234
++ L + +ELF M +G F CV+ G G L++ + + E D
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAAT--IACVLSACGHWGALAQGRWIHLYCERNSIEMD 178
Query: 235 ASVLGALLG 243
+ AL+G
Sbjct: 179 LNARNALIG 187
>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Brachypodium distachyon]
Length = 530
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 183/312 (58%), Gaps = 4/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY K GD+ +A LFE M + D+ +W ++I + +NGC EAI VF M+ V
Sbjct: 221 MISGYAKAGDVQAAASLFERMENQNDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICV 280
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ SV+S+C+ L G L G V ++ I L + TAL+DLY K G ++
Sbjct: 281 LPNEKTFSSVISACSQL---GNLRFGLWVESFMCSLGIELDDHLRTALVDLYTKSGRIDN 337
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+ + +DV +++AMI N + EA+ +F EM + + N +TFV +L+A
Sbjct: 338 AFKLFRGLRTRDVVSYSAMIVGCGMNGKLSEAIGLFKEMSDAKIVPNAVTFVGLLSAYNH 397
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L+E F M K+ + P MEHY +VDLLGR+G L EA + + MP +P ASV G
Sbjct: 398 AGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMKMPMQPHASVWG 457
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++H V+L V + EL P G Y++L NI+A +W++ LRK M+E G
Sbjct: 458 ALLLACRLHTNVELGEMVASKCFELAPGESGYYILLGNIYAQANKWDKVKSLRKTMMEMG 517
Query: 300 IRKIPAYSLIEA 311
+ K+P S ++A
Sbjct: 518 LSKMPGSSWVQA 529
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 24/255 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +++GD+ +A LF+ M RDVVSW S++ G + G AI +F M
Sbjct: 128 LLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDCAIELFHQMPER----- 182
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A++ +V+ GL+ G L ++ V S +I Y K G ++ A
Sbjct: 183 -NAASWNAVM---CGLIAHGHLARARE----WFEQMPVRSNVSWITMISGYAKAGDVQAA 234
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTAC 177
+F+ M + D+ WNAMI+ N +EA+ +F M + + NE TF +V++AC
Sbjct: 235 ASLFERMENQNDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISAC 294
Query: 178 ARAQLVELGL--ELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
++ + GL E F LG + + +H +VDL ++G + A + R + D
Sbjct: 295 SQLGNLRFGLWVESFMCSLG----IELDDHLRTALVDLYTKSGRIDNAFKLFRGLRTR-D 349
Query: 235 ASVLGALLGACKIHG 249
A++ C ++G
Sbjct: 350 VVSYSAMIVGCGMNG 364
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 181/298 (60%), Gaps = 11/298 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +R+VVSW SI+ V NG F + F M+G P+E T V +LS+C G
Sbjct: 170 VFDEMTERNVVSWNSIMTALVENGKFNLVVECFFEMIGRQFC--PDETTMVVLLSACGG- 226
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L LGK VH ++ E+ L+ +GTAL+D+Y K G L+ A VF+ M K+V TW+
Sbjct: 227 ----NLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWS 282
Query: 137 AMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
AMI LA +EAL +F +M KE +R N +TF+ VL AC+ LV+ G + FH M
Sbjct: 283 AMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEK 342
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD--- 252
+ ++ P+M HYG +VD+LGRAG L+EA +F++ MPFEPDA V LL AC IH D
Sbjct: 343 RHKIKPMMIHYGAMVDILGRAGRLNEAYDFIQKMPFEPDAVVWRTLLSACSIHHDEDDKG 402
Query: 253 LCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ +V +RL+EL+PK G V+++N A W+ A ++R+ M E ++KI S +E
Sbjct: 403 IGEKVKKRLIELEPKRSGNLVIVANRFAEARMWDEAAEVRRVMKETKMKKIAGESCLE 460
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A L+FE M ++V +W+++I G + G EA+ +F MM + VR
Sbjct: 253 LVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESS-VR 311
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T++ VL +C+ GLV++G Y H R++I + A++D+ G+ G L
Sbjct: 312 PNYVTFLGVLCACSHTGLVDDGYKYF----HEMEKRHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 119 RAIRVFKSMVIK-DVCTWNAMISSLASNSREKE 150
A + M + D W ++S+ + + E +
Sbjct: 368 EAYDFIQKMPFEPDAVVWRTLLSACSIHHDEDD 400
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
+W + G+ + E+I V+ M ++PN+ T+ +L +CA + GL G+Q
Sbjct: 80 TWNMLTRGYSSSDTPVESIWVYSEM--KRRRIKPNKLTFPFLLKACASFL---GLTAGRQ 134
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+ +L++ V++G LI LYG A +VF M ++V +WN+++++L N +
Sbjct: 135 IQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNSIMTALVENGK 194
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ F EM + +E T V +L+AC
Sbjct: 195 FNLVVECFFEMIGRQFCPDETTMVVLLSAC 224
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + ++ A L+F+ M+ ++ VSW ++I G+ R G +A C+F NM+ V+
Sbjct: 159 ILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLREN--VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P TY SVL +CA + G L GK VH +++ L F+G L+D+Y K G +E A
Sbjct: 217 PTHFTYSSVLCACASM---GSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDA 273
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + +DV +WN+M++ + + K AL F+EM + N+ITF+ VLTAC+ A
Sbjct: 274 KKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHA 333
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F M+ K+ V P + HY +VDLLGRAG L A +F+ MP +P A+V GA
Sbjct: 334 GLLDEGRHYF-DMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGA 392
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H ++L + EL + G +V+L NI+A RWN A +RK M E+G+
Sbjct: 393 LLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGV 452
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 453 KKEPACSWVE 462
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 132/249 (53%), Gaps = 5/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K GD+ A LF+ M RDVV+WT++I G+ ++ +A+ + M+ + L +
Sbjct: 56 LLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML-RIGL-K 113
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T S+L + +G V + G+Q+HG LR +V++ A++D+Y + LE A
Sbjct: 114 PNQFTLASLLKAASG-VGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA 172
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F MV K+ +WNA+I+ A + +A +F M + ++ T+ +VL ACA
Sbjct: 173 QLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASM 232
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + H+++ K+ + ++D+ ++G + +AK+ + + D +
Sbjct: 233 GSLEQG-KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNS 290
Query: 241 LLGACKIHG 249
+L HG
Sbjct: 291 MLTGYSQHG 299
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
++L C L L GK +H +L + + M L++LY K G L A ++F M
Sbjct: 20 TLLKRCTHL---NKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEM 76
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+DV TW A+I+ + + R ++AL++ EM GL+ N+ T ++L A +
Sbjct: 77 SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAAS 127
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+D Y K G D++ A +F+ M +RDVVSW S+I + +NG EAI ++ M+
Sbjct: 93 MLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 151
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ N +VL +CA + G + GK +H ++R + +V++GT+++D+Y K G +E
Sbjct: 152 IKCNAVALSAVLLACA---HAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVE 208
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R F+ + K++ +W+AMI+ + R +EAL +F EMK GLR N ITF++VL AC+
Sbjct: 209 MASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS 268
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G +++M +F + +EHYGC+VDLLGRAG L EA ++ M +PDA++
Sbjct: 269 HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIW 328
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+IH V+L +RL EL + G YV+LSNI+A W +R +
Sbjct: 329 GALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTR 388
Query: 299 GIRKIPAYSLIE 310
I K P YS E
Sbjct: 389 RIEKPPGYSSFE 400
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 132/276 (47%), Gaps = 21/276 (7%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + + V T++ +G+VRN ++ +F+ M+ + + +EA + S+ A +
Sbjct: 7 FDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVP 66
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMVIKDVCTW 135
+ G + +H I + + + ++D Y K G LE A +VF +M +DV +W
Sbjct: 67 DRG---VTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSW 122
Query: 136 NAMISSLASNSREKEALVMFDEMKE--KGLRANEITFVAVLTACARAQLVELGLELFHSM 193
N+MI+ A N EA+ ++ +M G++ N + AVL ACA A ++ G + + +
Sbjct: 123 NSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQV 182
Query: 194 --LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-- 249
+G E V + +VD+ + G + A R + E + A++ +HG
Sbjct: 183 VRMGLEENVYVGT---SIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRG 238
Query: 250 --AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
A+++ E+ R L+P + VL+ HAGL
Sbjct: 239 QEALEIFTEMKRS--GLRPNYITFISVLAACSHAGL 272
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y MD ++ +F++ D V W S++ G+ +NG EA+ +F+ M+ VR
Sbjct: 528 LIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG--VR 585
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T+ S++ + L L LGKQ+H Y++R ++F+ ++LID+Y K G ++ A
Sbjct: 586 PVPVTFSSLIPAFGNL---SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIA 642
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF + D+ +W AMI A + EA V+F+ M+ ++ N ITF+AVLTAC+ A
Sbjct: 643 RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHA 702
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F+SM ++ VP +EH + D LGRAG L EA F+ M +P +SV
Sbjct: 703 GLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWST 762
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H L EV +++ EL+PK G +V+LSN+++ RWN A LRK+M G+
Sbjct: 763 LLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGM 822
Query: 301 RKIPAYSLIE 310
+K PA S IE
Sbjct: 823 KKEPACSWIE 832
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 16/286 (5%)
Query: 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62
+G +++ +S +F+ ML+RD VSW ++I G + EA+ + + M + + P+
Sbjct: 429 EGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM--PD 486
Query: 63 EATYVSVL---SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
T +VL + CA + G VHGY ++N VF+G++LID+Y ++
Sbjct: 487 TFTLSTVLPIFAECADIKR------GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDY 540
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+++VF S D WN+M++ A N +EAL +F M + G+R +TF +++ A
Sbjct: 541 SMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGN 600
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+ LG +L H+ L + + ++D+ + G + A+ + PD
Sbjct: 601 LSLLRLGKQL-HAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWT 658
Query: 240 ALLGACKIHGAVDLCHEVGRR--LLELQPKHCGRYVVLSNI-HAGL 282
A++ +HG + R L ++P H VL+ HAGL
Sbjct: 659 AMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGL 704
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
SW I G F AI +F M +V A+ + L SCAGL G L
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGL---GLCTLAAS 387
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKV---------------GCLERAI-----RVFKSM 127
+H +R+ F AL++L K+ G LE A +VF M
Sbjct: 388 LHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEM 447
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ +D +WN +I A + R +EAL M EM G + T VL A ++ G+
Sbjct: 448 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 507
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 184/308 (59%), Gaps = 7/308 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY + +M+ A LF M R+VVSW ++ +VR + E + +F MMG
Sbjct: 144 MIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGET---M 200
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
PNEAT VSVL++CA L G L GK +H YI N ++ V + TAL+ +Y K G ++
Sbjct: 201 PNEATLVSVLTACAHL---GRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDL 257
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M + V +WN+MI + + +AL MF +M+++G N+ TF+ VL+ACA
Sbjct: 258 ARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAH 317
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ ++ G F M +++ P +EHYGC+VDLLGRAGL+ + +E +R MP E ++ G
Sbjct: 318 SGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWG 377
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC+ H +L V +RL+EL+P+ G Y++LSNI+A +W+ +RK M E G
Sbjct: 378 ALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERG 437
Query: 300 IRKIPAYS 307
+ K S
Sbjct: 438 LTKTTGLS 445
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 114/253 (45%), Gaps = 17/253 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A +FE D+V+W S+I+G+V+NG G A +F+ M
Sbjct: 51 LIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEM-------- 102
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E S S AG V G + + + + +IV +ID Y +V +E A
Sbjct: 103 -PERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIV----SWNCMIDGYAQVQNMEIA 157
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V +WN M++ E L MFD+M + + NE T V+VLTACA
Sbjct: 158 CELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHL 216
Query: 181 QLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++ G + HS + V+ P + ++ + + G + A++ M S
Sbjct: 217 GRLDRG-KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNS 275
Query: 240 ALLGACKIHGAVD 252
++G +HG D
Sbjct: 276 MIMGY-GMHGQAD 287
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V PN T+ ++ C + G + G+++H IL+ L +F+ +LI +Y G +
Sbjct: 6 VAPNHYTFPLLVKVCWEI---GSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIG 62
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F+ I D+ TWN+MI N A +F+EM E+ L ++ +++
Sbjct: 63 DARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL----FSWNSMIAGYV 118
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
+ +LF+ M + ++V + C++D + + A E MP+
Sbjct: 119 GNGDMTAAEDLFNKMPFR-DIVS----WNCMIDGYAQVQNMEIACELFNWMPY 166
>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y ++ + +F+ M R+V WT++ING+V+NG +A+ + + M + +R
Sbjct: 281 LIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMK-DGIR 339
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ + +S L +C L GL GKQ+HG+ ++ E+ V + ALID+Y K G L+ A
Sbjct: 340 PNKVSLISALPACGLL---AGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYA 396
Query: 121 IRVFK-SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R F+ S KD TW++MIS+ + R +EA++ + +M ++G + + IT V VL+AC++
Sbjct: 397 RRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSK 456
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ G+ ++ S++ K+E+ P +E CVVD+LGR+G L +A EF++ MP +P SV G
Sbjct: 457 SGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWG 516
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL A IHG R LLEL+P++ Y+ LSN +A RW+ T++R M E G
Sbjct: 517 SLLTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERG 576
Query: 300 IRKIPAYSLI 309
++K+P S I
Sbjct: 577 LKKVPGCSWI 586
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV----- 59
Y + G+ A+ +F+ R+V S+ +I+G C C F + N
Sbjct: 174 YCRCGEFGDAVKVFDETPHRNVGSFNVVISG-----CAALENCNFTSHDDLSNFFLRMQC 228
Query: 60 ---RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL----SVFMGTALIDLYG 112
+ + T S+L C G + G G+++H Y+++N + L V +G++LID+Y
Sbjct: 229 EGFKADAFTVASLLPVCCG--DTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYS 286
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFV 171
+ + RVF M ++V W AMI+ N +ALV+ M+ K G+R N+++ +
Sbjct: 287 RSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLI 346
Query: 172 AVLTACA-RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ L AC A L+ G + H K E+ + ++D+ + G L A+ +
Sbjct: 347 SALPACGLLAGLI--GGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSS 404
Query: 231 FEPDASVLGALLGACKIHG 249
+ DA +++ A +HG
Sbjct: 405 YFKDAITWSSMISAYGLHG 423
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G++ ++ +FE++ + V W S+ING+V+N F +A+ +F+ M N L
Sbjct: 69 LVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGML-- 126
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +V L + L GK +HG +R V V +G +L+ +Y + G A
Sbjct: 127 PDDYTLATVFKVFGELED---LVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDA 183
Query: 121 IRVFKSMVIKDVCTWNAMISSLAS----NSREKEALV-MFDEMKEKGLRANEITFVAVLT 175
++VF ++V ++N +IS A+ N + L F M+ +G +A+ T ++L
Sbjct: 184 VKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLP 243
Query: 176 AC 177
C
Sbjct: 244 VC 245
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
L +Q H IL N + F+ T L+ Y G L + VF+S+ K V WN++I+
Sbjct: 46 LAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYV 105
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVL 174
N ++AL +F EM G+ ++ T V
Sbjct: 106 KNHDFRQALALFREMGRNGMLPDDYTLATVF 136
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 199/310 (64%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++ GD +A +LF+ M +R VVSW ++I+G+ +NG F +A+ VF+ M + +R
Sbjct: 207 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGED-IR 265
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LG+ +H Y + I + +G+ALID+Y K G +E+A
Sbjct: 266 PNYVTLVSVLPAVSRL---GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 322
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + ++V TW+AMI+ A + + +A+ F +M++ G+R +++ ++ +LTAC+ A
Sbjct: 323 IMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHA 382
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGR GLL EA+EF+ +MP +PD + A
Sbjct: 383 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKA 442
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H V++ V L+++ P G YV LSN++A W+ +++R M E I
Sbjct: 443 LLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDI 502
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 503 RKDPGCSWID 512
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 56/289 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGE--AICVFKNMMGNVNLVRPNEATYV 67
D+D A +F M +R+ SW +II GF + AI +F MM + + PN T+
Sbjct: 67 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSD-EFIEPNRFTFP 125
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS---------------------- 100
SVL +CA G + GKQ+HG L+ +E V+S
Sbjct: 126 SVLKACA---KTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182
Query: 101 ------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
V + +ID Y ++G + A +F M + V +WN MIS
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242
Query: 143 ASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ N K+A+ +F EMK+ + +R N +T V+VL A +R +ELG E H + + +
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLH-LYAEDSGIR 300
Query: 202 IMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
I + G ++D+ + G++ +A +P E + A++ IHG
Sbjct: 301 IDDVLGSALIDMYSKCGIIEKAIMVFERLPRE-NVITWSAMINGFAIHG 348
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 189/311 (60%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
+ID Y K +D A+ +F + L++++VSWTSII G + N CF EA+ F+ M + +
Sbjct: 450 LIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCF-EALFFFREM---IRRL 505
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PN T V VLS+CA + G L GK++H + LR + FM A++D+Y + G +E
Sbjct: 506 KPNSVTLVCVLSACARI---GALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEY 562
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A + F S V +V +WN +++ A + A +F M E + NE+TF+++L AC+R
Sbjct: 563 AWKQFFS-VDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSR 621
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ +V GLE F+SM K+ ++P ++HY CVVDLLGR+G L EA EF++ MP +PD +V G
Sbjct: 622 SGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWG 681
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL +C+IH V+L + + G Y++LSN++A +W++ ++RK M + G
Sbjct: 682 ALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNG 741
Query: 300 IRKIPAYSLIE 310
+ P S +E
Sbjct: 742 LIVDPGCSWVE 752
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 6/228 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK GD+++A L+F+ M RD +SW ++I+G+ NG E + +F M+ V
Sbjct: 248 LITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYP--VD 305
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SV+++C L G LG+Q+HGY+LR E + +LI +Y VG +E A
Sbjct: 306 PDLMTMTSVITACELL---GDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +D+ +W AMIS + ++AL + M+ +G+ +EIT VL+AC+
Sbjct: 363 ETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCL 422
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
+++G+ L H + + +V ++D+ + + +A E S
Sbjct: 423 CNLDMGMNL-HEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHS 469
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G ++ A +F RD+VSWT++I+G+ +A+ +K M +
Sbjct: 349 LIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMM--EAEGIM 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VLS+C+ L N L +G +H + +V + +LID+Y K C+++A
Sbjct: 407 PDEITIAIVLSACSCLCN---LDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F S + K++ +W ++I L N+R EAL F EM + L+ N +T V VL+ACAR
Sbjct: 464 LEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARI 522
Query: 181 QLVELGLEL 189
+ G E+
Sbjct: 523 GALTCGKEI 531
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 6/223 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V+ G++ A +F M KR++ SW ++ G+ + G F EA+ ++ M+ V+
Sbjct: 147 LLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG--VK 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C G+ N L G+++H +++R V + ALI +Y K G + A
Sbjct: 205 PDVYTFPCVLRTCGGMPN---LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTA 261
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +D +WNAMIS N E L +F M + + + +T +V+TAC
Sbjct: 262 RLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELL 321
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
LG ++ H + + E + ++ + GL+ EA+
Sbjct: 322 GDDRLGRQI-HGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAE 363
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G +V+ Y+ + LS+ +G AL+ ++ + G L A VF M +++ +WN ++ A
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
EAL ++ M G++ + TF VL C
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTC 217
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +F+ M RDVVSWT++I+ +G E +F+++M + VR
Sbjct: 261 LLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSG--VR 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ VL++CA E +LGK+VHGY++ F +AL+ +Y K G A
Sbjct: 319 PNEYTFAGVLNACADHAAE---HLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M D+ +W ++I A N + EAL F+ + + G + +++T+V VL+AC A
Sbjct: 376 RRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHA 435
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE FHS+ K ++ +HY CV+DLL R+G EA+ + +MP +PD + +
Sbjct: 436 GLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWAS 495
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IHG ++L + L E++P++ Y+ L+NI+A W+ ++RK M GI
Sbjct: 496 LLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGI 555
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 556 VKKPGKSWIE 565
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 4/194 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G ++ A LF+ M +RD SW + I+G+V + EA+ +F+ +M
Sbjct: 159 MIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFR-VMQRHERSS 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T S L++ A + L LGK++HGY++R E+ L + +AL+DLYGK G L+ A
Sbjct: 218 SNKFTLSSALAASAAI---PCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +DV +W MI + R +E ++F ++ + G+R NE TF VL ACA
Sbjct: 275 RGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADH 334
Query: 181 QLVELGLELFHSML 194
LG E+ M+
Sbjct: 335 AAEHLGKEVHGYMM 348
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RP+ Y +++++C V L LG++VH + + V VF+ L+D+Y K G L
Sbjct: 84 RPSARVYSTLIAAC---VRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVD 140
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M +D+C+WN MI A R ++A +FDEM ++ + ++ A ++
Sbjct: 141 AQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR----DNFSWNAAISGYVT 196
Query: 180 AQLVELGLELFHSM 193
LELF M
Sbjct: 197 HNQPREALELFRVM 210
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K G++D A LFE M +RDVV W +I G+ ++G E++ +F+ M+ V
Sbjct: 213 MLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML--VAKAI 270
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T ++VLS+C L G L G+ +H YI I ++V +GTALID+Y K G LE A
Sbjct: 271 PNEVTVLAVLSACGQL---GALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA 327
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + KDV WN+MI A + + AL +F+EM E G + +ITF+ +L+AC
Sbjct: 328 RLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHG 387
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M K+ + P +EHYGC+V+LLGRAG L EA +++M D + G
Sbjct: 388 GLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGT 447
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C++H + L E+ + L++ + + G YV+LSN++A W +R M E GI
Sbjct: 448 LLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGI 507
Query: 301 RKIPAYSLIE 310
K S IE
Sbjct: 508 EKEHGCSSIE 517
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 43/251 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G +D ++ +F + +V S+++II+ V++ F A + M+ V PN
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCG--VEPNAF 146
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG------------ 112
T+ SVL SC+ L GK +H ++ + +++ T L+D+Y
Sbjct: 147 TFSSVLKSCS-------LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLF 199
Query: 113 -------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
K+G L++A +F+ M +DV WN MI A + E+L
Sbjct: 200 DKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLK 259
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDL 212
+F M NE+T +AVL+AC + +E G HS + + + + I H G ++D+
Sbjct: 260 LFRRMLVAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYI-ENKGIQINVHVGTALIDM 317
Query: 213 LGRAGLLSEAK 223
+ G L +A+
Sbjct: 318 YSKCGSLEDAR 328
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +LR + + + L Y +G L+ ++ VF + +V +++A+I S +
Sbjct: 65 QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
A + +M G+ N TF +VL +C+ +E G ++ H K + +
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESG-KVLHCQAIKLGLGSDLYVR 179
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMP 230
+VD+ R G + A++ MP
Sbjct: 180 TGLVDVYARGGDVVCARQLFDKMP 203
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG---CFG-----EAICVFKNM 52
+++ Y K G + + LF + K D+ SW SI++ +V N C E + +F M
Sbjct: 150 LLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEM 209
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+ L++ NE T V+++S+CA L G L G H Y+L++ + L+ F+GTALID+Y
Sbjct: 210 QKS--LIKANEVTLVALISACAEL---GALSQGAWAHVYVLKHNLKLNHFVGTALIDMYS 264
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K GCL+ A ++F + +D +NAMI A + +AL +F +M +GL +++T V
Sbjct: 265 KCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVV 324
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+ +C+ LVE G ++F SM + V P +EHYGC+VDLLGRAG L EA+E + +MP +
Sbjct: 325 TMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMK 384
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292
P+A + +LLGA ++HG +++ V + L++L+P+ G YV+LSN++A + RW+ +R
Sbjct: 385 PNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVR 444
Query: 293 KAMVEAGIRKIPAYSLIE 310
K M + GI K+P SL+E
Sbjct: 445 KLMKDHGINKVPGSSLVE 462
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFM 103
A ++ ++ + L +PN T+ S+ +C ++ L G+ +H ++L+ E F+
Sbjct: 91 AFSLYSRVLTHTTL-KPNGFTFPSLFKACG---SQPWLRHGRALHTHVLKFLEPTCDPFV 146
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN--------SREKEALVMF 155
AL++ Y K G + +F + D+ +WN+++S+ N S E L +F
Sbjct: 147 QAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLF 206
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLL 213
EM++ ++ANE+T VA+++ACA + G H + K + + H+ ++D+
Sbjct: 207 IEMQKSLIKANEVTLVALISACAELGALSQG-AWAHVYVLKHNLK--LNHFVGTALIDMY 263
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDL 253
+ G L A + +P D A++G IHG A+DL
Sbjct: 264 SKCGCLDLACQLFDQLPHR-DTLCYNAMIGGFAIHGYGHQALDL 306
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G++++A LF++M +RD+VSW +I+G+ ++G +A+ +F+ ++ +
Sbjct: 198 MITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE-GKPK 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V+ LS+C+ + G L G+ +H ++ + I L+V + T LID+Y K G LE A
Sbjct: 257 PDEITVVAALSACSQI---GALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ VF KD+ WNAMI+ A + ++AL +F+EM+ GL+ +ITF+ L ACA
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+ +F SM ++ + P +EHYGC+V LLGRAG L A E +++M + D+ +
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWS 433
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++LG+CK+HG L E+ L+ L K+ G YV+LSNI+A + + +R M E G
Sbjct: 434 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 493
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 494 IVKEPGISTIE 504
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 43/278 (15%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y +G + ++ LF + D+ +T+ IN NG +A ++ ++ + + PNE
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE--INPNE 130
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---------- 113
T+ S+L SC+ GK +H ++L+ + + ++ T L+D+Y K
Sbjct: 131 FTFSSLLKSCS-------TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKV 183
Query: 114 ---------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
G +E A +F SM +D+ +WN MI A + +AL
Sbjct: 184 FDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDAL 243
Query: 153 VMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
++F ++ +G + +EIT VA L+AC++ +E G H + + ++ ++D
Sbjct: 244 MLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLID 302
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + G L EA P D A++ +HG
Sbjct: 303 MYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 186/311 (59%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG + A+ LF +M R++ +WT++I+G V G A+ +F M + VR
Sbjct: 153 LVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEM--RRDGVR 210
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++A +S++ + + LG+Q+HG +R + ++ +G ALID+Y K + A
Sbjct: 211 IDDAFVLSIVIGASA--DLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSA 268
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +DV +W M+ A + R +EAL ++D M G + NE+TFV ++ AC+ A
Sbjct: 269 REVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 328
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G +LF SM ++ + P ++HY C +DLL R+G L EA+E M +MP+EPD + GA
Sbjct: 329 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 388
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC + ++C + +LLEL+PK Y++LSN++A +W+ +RK M+ I
Sbjct: 389 LLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEI 448
Query: 301 RKIPAYSLIEA 311
RK P YS IEA
Sbjct: 449 RKEPGYSWIEA 459
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K+ + A+ LF+ +RD+ ++S++ + A+ + + M+ + + +
Sbjct: 20 LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCML-SADALH 78
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SV S A L + LG+Q+H + + + + ++L+D+Y K G +
Sbjct: 79 PDHFVISSVASVFARLRSR---RLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDG 135
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF SM K+ W A++S ASN R +EAL +F M + L A ++
Sbjct: 136 RKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESV 195
Query: 181 QLVELGLEL 189
VEL +E+
Sbjct: 196 GAVELFVEM 204
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 187/312 (59%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK + A+ +F + K+D VSW S+I+G V EAI +F +MM + ++
Sbjct: 245 LIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELF-SMMQTSSGIK 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+CA L G + G+ VH Y+L I +GTA++D+Y K G +E A
Sbjct: 304 PDGHILTSVLSACASL---GAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F + K+V TWNA++ LA + E+L F+EM + G + N +TF+A+L AC
Sbjct: 361 LKIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHT 420
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G FH M + + + P +EHYGC++DL RAGLL EA E +++MP +PD + G
Sbjct: 421 GLVDEGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICG 480
Query: 240 ALLGACKIHGAV-DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
A+L ACK G + +L E+ LE++ + G YV+LSNI A RW+ + +R+ M
Sbjct: 481 AVLSACKSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVK 540
Query: 299 GIRKIPAYSLIE 310
GI K+P S IE
Sbjct: 541 GISKVPGSSSIE 552
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 129/258 (50%), Gaps = 22/258 (8%)
Query: 3 DGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D YV+N G+ +A +F+ M RDVVSWT II GF R G + EA+ F M
Sbjct: 140 DIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMD 199
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
V PN ATYV L S +G V G L LGK +HG IL+ ++S+ G ALID+Y K
Sbjct: 200 -----VEPNLATYVCALVS-SGRV--GCLSLGKGIHGLILKRASLISLETGNALIDMYVK 251
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVA 172
L A+ VF + KD +WN+MIS L R EA+ +F M+ G++ + +
Sbjct: 252 CEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTS 311
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPF 231
VL+ACA V+ G + +L + H G +VD+ + G + A + +
Sbjct: 312 VLSACASLGAVDYGRWVHEYVLS--AGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIR- 368
Query: 232 EPDASVLGALLGACKIHG 249
+ ALLG IHG
Sbjct: 369 RKNVFTWNALLGGLAIHG 386
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 108/283 (38%), Gaps = 58/283 (20%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N P+ T+ V +C G+ GKQ+HG + + +++ +L+ YG G
Sbjct: 100 NGFSPDMFTFPPVFKACGKF---SGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGE 156
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A +VF M ++DV +W +I+ KEAL F +M + N T+V L +
Sbjct: 157 SRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEPNLATYVCALVS 213
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE------------ 224
R + LG + H ++ K + +E ++D+ + LS+A
Sbjct: 214 SGRVGCLSLGKGI-HGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVS 272
Query: 225 -----------------------FMRSMPFEPDASVLGALLGACKIHGAVDL---CHE-- 256
S +PD +L ++L AC GAVD HE
Sbjct: 273 WNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYV 332
Query: 257 ----------VGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289
+G ++++ K CG I G+ R N T
Sbjct: 333 LSAGIKWDTHIGTAIVDMYAK-CGYIETALKIFNGIRRKNVFT 374
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K +++SA LF+ ++ + SW ++I+G+ +NG +AI +F+ M + PN
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE--FSPNPV 421
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +LS+CA L G L LGK VH + + S+++ TALI +Y K G + A R+F
Sbjct: 422 TITCILSACAQL---GALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWN MIS + + +EAL +F EM G+ +TF+ VL AC+ A LV+
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+F+SM+ ++ P ++HY C+VD+LGRAG L A +F+ +M EP +SV LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+IH +L V +L EL P + G +V+LSNIH+ + +A +R+ + + K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 305 AYSLIE 310
Y+LIE
Sbjct: 659 GYTLIE 664
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y K G + LF K D+V++ ++I+G+ NG ++ +FK +M ++ R
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM--LSGAR 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+T VS++ G L L +HGY L++ + + TAL +Y K+ +E A
Sbjct: 320 LRSSTLVSLVPV------SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N ++A+ +F EM++ N +T +L+ACA+
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQL 433
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ LG + H ++ + + ++ + + G ++EA+ M
Sbjct: 434 GALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 34/283 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K ++ A +F+ M ++D + W ++I+G+ +N + E+I VF++++ N + R
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI-NESCTR 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T + +L + A L L LG Q+H + ++ T I LY K G ++
Sbjct: 219 LDTTTLLDILPAVAELQE---LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA---- 176
+F+ D+ +NAMI SN + +L +F E+ G R T V+++
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 177 ---------CARAQL-----VELGLELFHSMLGK-------FEVVP--IMEHYGCVVDLL 213
C ++ V L +S L + F+ P + + ++
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 214 GRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
+ GL +A R M F P+ + +L AC GA+ L
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ++ + DV + ++ GF N ++ VF ++ + +L +PN +TY +S+ +G
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL-KPNSSTYAFAISAASGF 132
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
++ G+ +HG + + + +G+ ++ +Y K +E A +VF M KD WN
Sbjct: 133 RDDRA---GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWN 189
Query: 137 AMISSLASNSREKEALVMF-DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
MIS N E++ +F D + E R + T + +L A A Q + LG+++ HS+
Sbjct: 190 TMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-HSLAT 248
Query: 196 K 196
K
Sbjct: 249 K 249
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A LF+ M K++ V+W ++I+G+ +G EA+ +F M+ + +
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG--IT 518
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++ VL +C AGLV EG +H Y SV ++D+ G+ G L+
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP----SVKHYACMVDILGRAGHLQ 574
Query: 119 RAIRVFKSMVIKD-VCTWNAMI 139
RA++ ++M I+ W ++
Sbjct: 575 RALQFIEAMSIEPGSSVWETLL 596
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 187/318 (58%), Gaps = 17/318 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GDM+SA LF+++ +D+V+WT+++ G+ +NG EA+ F+ M +V +
Sbjct: 215 LIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGM-E 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-------MGTALIDLYGK 113
+E T V+S+CA LG H +R+ S F +G+ALID+Y K
Sbjct: 273 TDEVTLAGVISACA--------QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSK 324
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
G + A +VF+ M ++V ++++MI A + R AL +F +M + +R N++TF+ +
Sbjct: 325 CGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L+AC+ A LVE G +LF M F V P +HY C+VDLLGRAG L EA + +++MP EP
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444
Query: 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293
+ V GALLGAC+IHG D+ L +L+P G Y++LSNI+A RW + LRK
Sbjct: 445 NGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRK 504
Query: 294 AMVEAGIRKIPAYSLIEA 311
+ E G +K P S E
Sbjct: 505 VIREKGFKKNPGCSWFEG 522
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 66/322 (20%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
+L+F + + WT++I G+ G E+ + M + V P T+ ++ +C
Sbjct: 95 PLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKAC 152
Query: 74 AGLVNEGGLYLGKQVHGY-ILRNEIVLSVFMGTALIDLY---GKVGC------------- 116
+N + LGKQVH IL +++G ++IDLY G +GC
Sbjct: 153 GAALN---MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDV 209
Query: 117 ---------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+E A +F + +KD+ W AM++ A N R KEAL F +M++
Sbjct: 210 VSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV 269
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-----------CVV 210
G+ +E+T V++ACA+ V+ H+ + I E G ++
Sbjct: 270 GMETDEVTLAGVISACAQLGAVK------HANW----IRDIAERSGFGPSGNVVVGSALI 319
Query: 211 DLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
D+ + G EA + M F + +LG + + H A+ L H++ + E++P
Sbjct: 320 DMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG-RAHSALQLFHDMLK--TEIRP 376
Query: 267 KHCGRYVVLSNI-HAGLERWNR 287
+LS HAGL R
Sbjct: 377 NKVTFIGILSACSHAGLVEQGR 398
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--ERAIRVFKSMVIKDVCTWNAMISSLA 143
KQVH +I+RN + ++ T LI + KV + VF + + W AMI A
Sbjct: 59 KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
E+ + M+ G+ TF A+ AC A ++LG ++
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 5/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K+GD+ A L+FE M RD+ SW++++ G++ G + + +F+ M+ N L R
Sbjct: 12 MITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALFREMVVNEGL-R 70
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SVLS CA + GL +G+ +HG+ +N LSV +GT L+D+Y K G L+ A
Sbjct: 71 PDKVTLGSVLSGCARM-GSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSA 129
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M K+V +W A+I A + KEAL MF+ M++ G++ NE+TF +L+ACA+A
Sbjct: 130 FRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQA 189
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F+ + ++ + P ++H+GC+VDL G+AGLL EA E + SM EP+ + +
Sbjct: 190 GLVEEGRKYFNK-IEEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSS 248
Query: 241 LLGACKIHGAVDLCHEVGRRLLE-LQPKH-CGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
L +CK+H +L V ++L ++P++ G Y ++SN+ ++W+ A +RK MV
Sbjct: 249 FLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQ 308
Query: 299 GIRKIPAYSLIEA 311
+RK S I +
Sbjct: 309 KVRKARGSSFIRS 321
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 182/311 (58%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
MI GY+ G ++ A +F+ M +D +W+ +I G+ +NG EA+ +F+ MM N V
Sbjct: 195 MISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGV 254
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PNE+ VS LS+ A L G L G+ +H YI R +S+ +GT L+D+Y K G +
Sbjct: 255 QPNESALVSSLSATACL---GALDQGRWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHC 311
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ ++F+ M +DV TW M+S A + + ++ +FDEM G R NE+ FVA+L+AC+
Sbjct: 312 SYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILSACSH 371
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A +ELG F+ M+ F + P +EHYGC+VDLLGRAG L+EA+E + SMP EP A + G
Sbjct: 372 AGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELIISMPEEPTAVIWG 431
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC+IH + R+L++L+P RY + + + A ++ + + E
Sbjct: 432 ALLSACRIHKDLRRGRRAFRQLMQLEPLRGDRYKLAGQMFSSAGEKEEADNVTRFIKENE 491
Query: 300 IRKIPAYSLIE 310
+ S IE
Sbjct: 492 LETTRGSSFIE 502
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 41/291 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YV + A+L+F + DV ++ ++I G C ++ + + +
Sbjct: 63 LLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDS--LLLYNKLLLGGLT 120
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--- 117
P+ TY VL C+ L ++ GKQVH +++ + + T+LI +Y K CL
Sbjct: 121 PDNYTYTFVLKVCSHL---KAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACA 177
Query: 118 ----------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
E+A +F M KD TW+ MI+ N +
Sbjct: 178 EGVLAECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHE 237
Query: 150 EALVMFDEM---KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
EALVMF EM G++ NE V+ L+A A ++ G H+ + + +
Sbjct: 238 EALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQG-RWIHAYIRRIGAKISITLG 296
Query: 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
+VD+ + G + + + R M + D G ++ +HG C ++
Sbjct: 297 TGLVDMYAKCGSIHCSYKLFREMQ-QRDVVTWGVMMSGFAMHGQARKCFQL 346
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 185/318 (58%), Gaps = 13/318 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--------VVSWTSIINGFVRNGCFGEAICVFKNM 52
+I Y G D A +F + K D VVSW+++I GF G EA+ +F+ M
Sbjct: 1181 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+ V+ N T SVLS CA L L+LG+++HG+++R+ + ++ +G LI++Y
Sbjct: 1241 --QLAKVKANSVTIASVLSVCAEL---AALHLGREIHGHVVRSLMDGNILVGNGLINMYT 1295
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K G + VF+ + KD+ +WN M++ + + A+ FD+M + G + +TFVA
Sbjct: 1296 KSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVA 1355
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
VL+AC+ A LV G ELF M+ +F V P MEHY C+VDLLGRAGLL EA + ++SMP E
Sbjct: 1356 VLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE 1415
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292
P+A V GALL +C++H ++ E ++ L + G Y++LSNI+A RW + +R
Sbjct: 1416 PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 1475
Query: 293 KAMVEAGIRKIPAYSLIE 310
+ G++K P S I+
Sbjct: 1476 ISAKTKGLKKTPGQSWIQ 1493
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 40/226 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNE 63
Y K G MD A +FE M R VSW ++++G+ N C G A +F+ MMG+ L PN
Sbjct: 1018 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG-ASEMFR-MMGSAGL-EPNL 1074
Query: 64 ATYVSVLSSCA------------------GL--------------VNEGGLYLGKQVHGY 91
T+ S+LSS A G+ V+ GK +HGY
Sbjct: 1075 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 1134
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+++ +F+ +LI LYGK G + A +F + K++ +WNA+ISS A EA
Sbjct: 1135 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 1194
Query: 152 LVMFDEMKEKG----LRANEITFVAVLTACARAQLVELGLELFHSM 193
+F ++++ +R N +++ AV+ A E LELF M
Sbjct: 1195 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPNEATYVSVL 70
S I F N+L W SI+ V +G EA+ ++ M +G V + T+ V+
Sbjct: 930 SPIECFSNLLL-----WNSILRANVAHGYCEEALEIYCRMRKLG----VSADGFTFPLVI 980
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA + G L + VHG+++ ++ +G L+ +YGK+G ++ A +VF+ M ++
Sbjct: 981 RACALM---GSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR 1037
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-AQLVELGLEL 189
+WN M+S A N A MF M GL N +T+ ++L++ AR Q VE +EL
Sbjct: 1038 SCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET-MEL 1096
Query: 190 FHSM 193
F M
Sbjct: 1097 FGRM 1100
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPNEAT---YVSVLSSCAGLVNE 79
D+ S S+++G R +I N+ +++++ +PN + +L C+
Sbjct: 832 DMASEPSMLHGSSRRLI---SISFLPNLSRSISIIHHQPNNDVLDFFNDLLQQCSKS--- 885
Query: 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWN 136
+L +Q+H I+ S F+ ++ +Y G + A RVF+ I+ ++ WN
Sbjct: 886 ---HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWN 942
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+++ + ++ +EAL ++ M++ G+ A+ TF V+ ACA
Sbjct: 943 SILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACA 984
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G++ ++ +FE + ++D+V+WTS+IN + +G EA+ +F M V+
Sbjct: 507 IIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTD--VQ 564
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS+L + GL L GK+VHG+++R + + ++L+D+Y G L A
Sbjct: 565 PDSVALVSILGAIGGL---SSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGA 621
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF ++ KD+ W AMI++ + K+A+ +F M + G+ + ++F+A+L AC+ +
Sbjct: 622 LKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHS 681
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV G M+ + + P EHY CVVDLLGR+G EA EF++SMP +P + V +
Sbjct: 682 KLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCS 741
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H +L RLLEL+P + G YV++SN+ A + +WN A ++R + E G+
Sbjct: 742 LLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGL 801
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 802 RKDPACSWIE 811
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 139/273 (50%), Gaps = 39/273 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA+ +F + ++D +SW S+++ +V+NG + EAI M+ +P+ A
Sbjct: 310 YTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG--FQPDHA 367
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
VS+ S+ L G L GK+VH Y ++ + +G L+D+Y K +E + VF
Sbjct: 368 CIVSLSSAVGHL---GWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVF 424
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA------ 178
M IKD +W +I+ A +SR EAL +F E +++G++ + + ++L AC+
Sbjct: 425 DRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETIL 484
Query: 179 ----------RAQLVELGL------------ELFHSMLGKFEVVPIME--HYGCVVDLLG 214
R L++L + E++HS L FE V + + +++
Sbjct: 485 LAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHS-LKMFETVEQKDIVTWTSMINCYA 543
Query: 215 RAGLLSEAKEF---MRSMPFEPDASVLGALLGA 244
+GLL+EA M+S +PD+ L ++LGA
Sbjct: 544 NSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLVRPNE 63
Y K G + A LLF+ M R V SW ++I ++ +G EA+ V++ M + + V P+
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T SVL + +G+ EG G +VHG +++ + S F+ ALI +Y K G L+ A+RV
Sbjct: 165 CTLASVLKA-SGV--EGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRV 221
Query: 124 FKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
F+ M +DV +WN+MIS N +AL +F M+ L N T V VL C
Sbjct: 222 FELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQ 281
Query: 183 VELGLELFHSML 194
+ LG EL ++L
Sbjct: 282 LNLGRELHAALL 293
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 140/270 (51%), Gaps = 10/270 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K ++ + +F+ M +D +SWT+II + ++ EA+ +F+ V
Sbjct: 407 LMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVD 466
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P S+L +C+GL + L KQ+H Y +RN + L + + +ID+YG+ G + +
Sbjct: 467 P--MMIGSILEACSGLET---ILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHS 520
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F+++ KD+ TW +MI+ A++ EALV+F EM+ ++ + + V++L A
Sbjct: 521 LKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGL 580
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ G E+ H L + +VD+ G LS A + ++ + D + A
Sbjct: 581 SSLAKGKEV-HGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTA 638
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKH 268
++ A +HG ++ +R+L+ + P H
Sbjct: 639 MINATGMHGHGKQAIDLFKRMLQTGVTPDH 668
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y K G +DSA+ +FE M RDV SW S+I+G ++NG F +A+ +F+ M V +
Sbjct: 205 LIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAV--L 262
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
N T V VL C L L LG+++H +L++ +++ AL+ +Y K G ++
Sbjct: 263 SMNSYTTVGVLQVCTELAQ---LNLGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDS 318
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A+RVF+ + KD +WN+M+S N EA+ EM G + + V++ +A
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-- 159
F+ T L+ +YGK G + A +F M + V +WNA+I + S+ EAL ++ M+
Sbjct: 96 FLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLS 155
Query: 160 -EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
G+ + T +VL A G E+ H + K + ++ + + G+
Sbjct: 156 AASGVAPDGCTLASVLKASGVEGDGRCGCEV-HGLAVKHGLDRSTFVANALIAMYAKCGI 214
Query: 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQ 265
L A M D + +++ C +G A+DL + R +L +
Sbjct: 215 LDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMN 265
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 181/310 (58%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A +F M +D+VSW ++I G+ +N EA+ +F M N +
Sbjct: 393 LMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS---K 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +L +CA L L G+++HG+ILRN L + AL+D+Y K G L A
Sbjct: 450 PNSITMACILPACASL---AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + EA+ F+EM+ G+ +E++F+++L AC+ +
Sbjct: 507 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F+ M + P EHY C+VDLL RAG LS+A +F++ MP EPDA++ GA
Sbjct: 567 GLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGA 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+I+ V L +V + EL+P++ G YV+L+NI+A E+W LR+ + G+
Sbjct: 627 LLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 686
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 687 RKNPGCSWIE 696
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 10/250 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G+++SAI +FE M +R VVSWTS+I G+ R G ++ +F M +
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM--EKEGIS 349
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++L +CA G L GK VH YI N++ +F+ AL+D+Y K G + A
Sbjct: 350 PDIFTITTILHACAC---TGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDA 406
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +KD+ +WN MI + NS EAL +F EM+ + N IT +L ACA
Sbjct: 407 HSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASL 465
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G E+ H + F + + + +VD+ + G L A+ +P E D
Sbjct: 466 AALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIP-EKDLVSWT 522
Query: 240 ALLGACKIHG 249
++ +HG
Sbjct: 523 VMIAGYGMHG 532
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
++SA LF+ + RDV+SW S+I+G+V NG + + +F+ M+ + + + AT VSV+
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML--LLGINTDLATMVSVV 258
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ C+ N G L LG+ +HGY ++ + + L+D+Y K G L AI+VF++M +
Sbjct: 259 AGCS---NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER 315
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
V +W +MI+ A ++ +F EM+++G+ + T +L ACA L+E G ++
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDV- 374
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
H+ + + ++ + ++D+ + G + +A M
Sbjct: 375 HNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY SVL CA L + + G+++H I N++ + +G+ L+ +Y G L R+F
Sbjct: 103 TYCSVLQLCADLKS---IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--------------ITF 170
+ + V WN +++ A +E+L +F M+E G+R E I++
Sbjct: 160 DKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISW 219
Query: 171 VAVLTACARAQLVELGLELFHSML 194
++++ L E GL+LF ML
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQML 243
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ID Y K G + SA LF +D V+W II +++NG EAI F M +
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQM--RLENF 629
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PN T+VSVL + A L G H I++ + + +G +LID+Y K G L+
Sbjct: 630 HPNSVTFVSVLPAAAYL---AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDY 686
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ ++F M KD +WNAM+S A + A+ +F M+E ++ + ++FV+VL+AC
Sbjct: 687 SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE G ++FHSM K+ + P +EHY C+VDLLGRAGL E F++ MP EPDA V G
Sbjct: 747 AGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWG 806
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG+C++H V L L++L+P++ +VVLS+I+A RW A R M + G
Sbjct: 807 ALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866
Query: 300 IRKIPAYSLIE 310
++K P S +E
Sbjct: 867 LKKTPGCSWVE 877
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 125/223 (56%), Gaps = 8/223 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+ID Y K GD+D A +F+ M+ +D VSW +++ G+ NGCF E + +F M +GNV
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV--- 325
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R N+ + VS + A ++ L GK++HG L+ I + + T L+ +Y K G E+
Sbjct: 326 RINKVSAVSAFLAAAETID---LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +D+ W+A+I++L +EAL +F EM+ + ++ N +T +++L ACA
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
L++LG + H K ++ + +V + + G + A
Sbjct: 443 LSLLKLGKSI-HCFTVKADMDSDLSTGTALVSMYAKCGFFTAA 484
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 12/266 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+ + A LF + RD+V+W++II V+ G EA+ +F+ M ++PN
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK--MKPNRV 431
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +S+L +CA L L LGK +H + ++ ++ + GTAL+ +Y K G A+ F
Sbjct: 432 TLMSILPACADL---SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTF 488
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ TWN++I+ A A+ MF +++ + + T V V+ ACA ++
Sbjct: 489 NRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLD 548
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G H ++ K ++D+ + G L A+ F D ++ A
Sbjct: 549 QG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Query: 245 CKIHG----AVDLCHEVGRRLLELQP 266
+G A+ H++ RL P
Sbjct: 608 YMQNGHAKEAISSFHQM--RLENFHP 631
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 7/189 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ A +F+ M KRDVV+W ++I G ++ EA+ F++M LV
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSM----QLVG 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E + VS+L+ G+ + L + +HGY+ R + +V G LIDLY K G ++ A
Sbjct: 226 V-EPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV +D +W M++ A N E L +FD+MK +R N+++ V+ A A
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342
Query: 181 QLVELGLEL 189
+E G E+
Sbjct: 343 IDLEKGKEI 351
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D A +F++ + W S+I + R+ + EA+ ++ M+ + P++ T+ VL
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG--LEPDKYTFTFVLK 137
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
+C G +N L G HG I R + VF+G L+D+Y K+G L+RA VF M +D
Sbjct: 138 ACTGALN---LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
V WNAMI+ L+ + EA+ F M+ G+ + ++ + + + +EL
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N Y +LSSC L ++ V G+ + I T LI+LY + A
Sbjct: 31 NYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-------THLINLYSLFHKCDLAR 83
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF S WN+MI + + + EAL M+ M EKGL ++ TF VL AC A
Sbjct: 84 SVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGAL 143
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G+ FH + + + + +VD+ + G L A+E MP
Sbjct: 144 NLQEGV-WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP 191
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 179/302 (59%), Gaps = 5/302 (1%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G++ A +F+ M RD +W +I + R G EA+ +F M VRP+ + +S
Sbjct: 279 GEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQG--VRPSFPSLIS 336
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+LS CA L + L G+QVH +++R + V++ + L+ +Y K G L +A VF
Sbjct: 337 ILSVCATLAS---LQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFP 393
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KD+ WN++IS AS+ +EAL +F EM G N++T +A+LTAC+ +E GLE
Sbjct: 394 SKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLE 453
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+F SM KF V P +EHY C VD+LGRAG + +A E + SM +PDA+V GALLGACK H
Sbjct: 454 IFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTH 513
Query: 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308
+DL ++L E++P++ G Y++LS+I+A +W ++RK M + K P S
Sbjct: 514 SRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSW 573
Query: 309 IE 310
IE
Sbjct: 574 IE 575
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG A +F+ M +R++VSW +++G+++N EA VF+ M
Sbjct: 54 IVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIM-------- 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + G V EG + + + + RNE+ +V G LID G ++
Sbjct: 106 -PERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFG-GLID----GGRIDD 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +++ M KDV MI L R EA +FDEM+E+ N IT+ ++T +
Sbjct: 160 ARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRER----NVITWTTMITGYGQ 215
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR--AGLLSEAKEFMRSMPFEP 233
+ V++ +LF M K EV LLG +G + +A+EF MP +P
Sbjct: 216 NKRVDVARKLFEVMPEKTEV-------SWTSMLLGYTLSGRIEDAEEFFEVMPMKP 264
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 122/286 (42%), Gaps = 48/286 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G +D A +F+ M +R+V++WT++I G+ +N A +F+ M
Sbjct: 178 MIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM-------- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T VS S G G + ++ + ++ A+I G+VG + +A
Sbjct: 230 -PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC----NAMIVALGEVGEIVKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +D TW MI + E EAL +F +M+ +G+R + + +++L+ CA
Sbjct: 285 RRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATL 344
Query: 181 QLVELGLELFHSMLGK-----------------------------FEVVPIME--HYGCV 209
++ G ++ H+ L + F+ P + + +
Sbjct: 345 ASLQYGRQV-HAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSI 403
Query: 210 VDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVD 252
+ GL EA + MP P+ L A+L AC G ++
Sbjct: 404 ISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLE 449
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 24/206 (11%)
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
I ++G + A + F S+ K + +WN+++S +N +EA MFDEM E+ N
Sbjct: 24 ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER----NI 79
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
+++ +++ + +++E +F M + V + +V + G++ EA+
Sbjct: 80 VSWNGLVSGYIKNRMIEEARNVFEIMPERNVV-----SWTAMVKGYVQEGMVVEAELLFW 134
Query: 228 SMPFEPDAS---VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS-NIHAGLE 283
MP + S + G L+ +I A R+L ++ P G+ VV S N+ GL
Sbjct: 135 RMPERNEVSWTVMFGGLIDGGRIDDA--------RKLYDMMP---GKDVVASTNMIGGLC 183
Query: 284 RWNRATDLRKAMVEAGIRKIPAYSLI 309
R R + R+ E R + ++ +
Sbjct: 184 REGRVDEAREIFDEMRERNVITWTTM 209
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A F + +D V W S+I +NG EAI +F+ M + +
Sbjct: 491 IMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM--GMAGTK 548
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L L+ GK++H +++R +F +ALID+Y K G L+ A
Sbjct: 549 YDCVSISAALSACANLP---ALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 605
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +M K+ +WN++I++ ++ R K++L +F M G++ + +TF+A+++AC A
Sbjct: 606 CRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHA 665
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F M + ++ MEHY C+VDL GRAG L+EA + SMPF PDA V G
Sbjct: 666 GQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGT 725
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG V+L R L +L P++ G YV+LSN+HA +W +R M E G+
Sbjct: 726 LLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGV 785
Query: 301 RKIPAYSLIE 310
+K+P S I+
Sbjct: 786 QKVPGCSWID 795
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 136/265 (51%), Gaps = 25/265 (9%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A LF+ M K D+V+W +I+G+V+NG EA C+F M+ ++P+
Sbjct: 293 YAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA--RMKPDSI 350
Query: 65 TYVSVLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ S L L++EG L GK++H YI+RN + L VF+ +ALID+Y K +E A ++
Sbjct: 351 TFSSFLP----LLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKI 406
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F D+ AMIS N AL +F + ++ +RAN +T +VL ACA +
Sbjct: 407 FDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAAL 466
Query: 184 ELGLELFHSMLGKFEVVPIMEHYG------CVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LG EL +L H G ++D+ + G L A + + + DA
Sbjct: 467 TLGKELHGHILKN-------GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVC 518
Query: 238 LGALLGACKIHG----AVDLCHEVG 258
+++ +C +G A+DL ++G
Sbjct: 519 WNSMITSCSQNGKPEEAIDLFRQMG 543
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 150/287 (52%), Gaps = 16/287 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D++ A +F+ D+V T++I+G+V NG A+ +F+ ++ +R
Sbjct: 390 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLL--QERMR 447
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T SVL +CAGL L LGK++HG+IL+N S ++G+A++D+Y K G L+ A
Sbjct: 448 ANSVTLASVLPACAGLA---ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F + KD WN+MI+S + N + +EA+ +F +M G + + ++ A L+ACA
Sbjct: 505 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 564
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G E+ M+ G F E ++D+ + G L A +M E +
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTME-EKNEVSWN 621
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAG 281
+++ A HG +++L H G +QP H ++S HAG
Sbjct: 622 SIIAAYGNHGRLKDSLNLFH--GMLGDGIQPDHVTFLAIISACGHAG 666
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +NG + A LF+ M +D V W ++NG+V+NG + A VF M
Sbjct: 188 LIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM--RRTETN 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ VLS CA +E + G Q+HG ++ + + + + L+ +Y K G L A
Sbjct: 246 PNSVTFACVLSVCA---SEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDA 302
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M D+ TWN MIS N EA +F EM ++ + ITF + L +
Sbjct: 303 RRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEG 362
Query: 181 QLVELGLEL 189
+ G E+
Sbjct: 363 ATLRQGKEI 371
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W +I GF G F A+ + M+G L P++ T+ V+ +C GL + LG+ V
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTL--PDKYTFPYVIKACGGL---NSVALGRVV 169
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H I L VF+G++LI Y + GC+ A +F M KD WN M++ N
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW 229
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
A +F EM+ N +TF VL+ CA ++ G +L
Sbjct: 230 DNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VS+L +C + GL G+Q H +L N I + +GT L+ +Y G A +F
Sbjct: 50 VSILQTC---TDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQ 106
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ + WN MI + AL+ + +M G ++ TF V+ AC V LG
Sbjct: 107 LRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG 166
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ ++ +F +M D V+W ++I+ VR G F + V M N V
Sbjct: 449 LIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNK--VV 506
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT++ L CA L + LGK++H +LR + +G ALI++Y K GCLE +
Sbjct: 507 PDMATFLVTLPMCASLAAKR---LGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESS 563
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF+ M +DV TW MI + ++AL F +M++ G+ + + F+A++ AC+ +
Sbjct: 564 FRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHS 623
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M +++ P++EHY CVVDLL R+ +S+A+EF+++MP EPDAS+ +
Sbjct: 624 GLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWAS 683
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC+ G ++ V RR++EL P G ++ SN +A L +W++ + +RK++ + I
Sbjct: 684 VLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHI 743
Query: 301 RKIPAYSLIE 310
+K P YS IE
Sbjct: 744 KKNPGYSWIE 753
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 6/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GDM +A +F +M +D VSW SII+G++++G EA+ +FK MM + +
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM--IMEEQ 405
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ TY+ ++S L + L GK +H +++ I + + + ALID+Y K G + +
Sbjct: 406 ADHITYLMLISLSTRLAD---LKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDS 462
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F SM D TWN +IS+ L + +M++ + + TF+ L CA
Sbjct: 463 LKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASL 522
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
LG E+ H L +F ++ ++++ + G L +
Sbjct: 523 AAKRLGKEI-HCCLLRFGYESELQIGNALIEMYSKCGCLESS 563
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ID Y S++ +F + ++V W SII F +NG F +A+ + + + V
Sbjct: 45 LIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKL--RESKV 102
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P++ T+ SV+ +CAGL + +G V+ IL +++G AL+D+Y ++G L R
Sbjct: 103 SPDKYTFPSVIKACAGLFDAE---MGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSR 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M ++D+ +WN++IS +S+ +EAL ++ E++ + + T +VL A A
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFAN 219
Query: 180 AQLVELG 186
+V+ G
Sbjct: 220 LLVVKQG 226
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 8/241 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+K A +F+ M+ RD V++ ++I G+++ E++ +F + N++ +P+
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF---LENLDQFKPDIL 308
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T SVL +C L + L L K ++ Y+LR VL + LID+Y K G + A VF
Sbjct: 309 TVTSVLCACGHLRD---LSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVF 365
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
SM KD +WN++IS + EA+ +F M +A+ IT++ +++ R ++
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLK 425
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G L HS K + + ++D+ + G + ++ + SM D ++ A
Sbjct: 426 FGKGL-HSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISA 483
Query: 245 C 245
C
Sbjct: 484 C 484
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 119/230 (51%), Gaps = 9/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G + A +F+ M RD+VSW S+I+G+ +G + EA+ ++ + + +
Sbjct: 147 LVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNS--WIV 204
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SVL + A L+ + G+ +HG+ L++ + + L+ +Y K A
Sbjct: 205 PDSFTVSSVLPAFANLL---VVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDA 261
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV++D T+N MI +E++ MF E ++ + + +T +VL AC
Sbjct: 262 RRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHL 320
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + L +++ ML F + +++ ++D+ + G + A++ SM
Sbjct: 321 RDLSLAKYIYNYMLRAGFVLESTVKN--ILIDVYAKCGDMITARDVFNSM 368
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLAS 144
+++H ++ + S F LID Y ++ VF+ + K+V WN++I + +
Sbjct: 24 RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSK 83
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +AL + +++E + ++ TF +V+ ACA E+G +L + + + +
Sbjct: 84 NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMG-DLVYKQILEMGFESDLY 142
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
+VD+ R GLLS A++ MP D +L+ HG A+++ HE+
Sbjct: 143 VGNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F M ++++SWT++I G+ +NGC EA+ VF M + +
Sbjct: 313 LVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEM--QRDGID 370
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q H L + ++ + + AL+ LYGK G +E A
Sbjct: 371 PDDYTLGSVISSCANLAS---LEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M D +W A++S A R KE + +F++M KG++ + +TF+ VL+AC+RA
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G FHSM +VPI +HY C++DL R+G L EA+EF++ MP PDA G
Sbjct: 488 GFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGT 547
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G +++ LLE+ P++ YV+L ++HA +WN LR+ M + +
Sbjct: 548 LLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQV 607
Query: 301 RKIPAYSLIE 310
+K P S I+
Sbjct: 608 KKEPGCSWIK 617
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 14/240 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++ ++ A LFE M RD ++WT+++ GF +NG EA+ +F+ M +
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM--RFQGIA 269
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ S+L++C L L GKQ+H YI+R +VF+G+AL+D+Y K ++ A
Sbjct: 270 IDQYTFGSILTACGAL---SALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLA 326
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M K++ +W A+I N +EA+ +F EM+ G+ ++ T +V+++CA
Sbjct: 327 ETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANL 386
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY----GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G + FH + +V + HY +V L G+ G + +A M F S
Sbjct: 387 ASLEEGAQ-FHCL----ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 441
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 34/204 (16%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
LF +M +RD+VS+ ++I GF G +A+ V+ ++ + VRP+ T +++ + + L
Sbjct: 94 LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-------------------- 116
G LGKQ H ILR + F+G+ L+D+Y K+
Sbjct: 154 ---GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYN 210
Query: 117 -----------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165
+E A R+F+ M +D TW M++ N E EAL +F M+ +G+
Sbjct: 211 TMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAI 270
Query: 166 NEITFVAVLTACARAQLVELGLEL 189
++ TF ++LTAC +E G ++
Sbjct: 271 DQYTFGSILTACGALSALEQGKQI 294
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGC 116
+ RP + Y ++LS+ A ++ +H ILR ++ L+ YGK G
Sbjct: 1 MSRPLSSQYAALLSAAA----RTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGR 56
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
RA RVF +M ++ T+NA++S+LA + +F M ++ + +
Sbjct: 57 HARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGG 116
Query: 177 CARAQLVELGLELFHS 192
+ AQ V + L L +
Sbjct: 117 GSHAQAVRVYLALLQA 132
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 188/311 (60%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I+ Y + GD SA +F + D VVS+ ++I VR+ GEA+ +F+ M +
Sbjct: 164 LINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREM--QAKGL 221
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P T SVLS+CA L G L LG+ +H Y+ + + V + TALID+YGK G LE
Sbjct: 222 KPTSVTVTSVLSACALL---GALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLED 278
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI VF+ M +D W+ MI + A++S +EA+ +F+EMK++G+R + +TF+ VL AC+
Sbjct: 279 AIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSH 338
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ +V GL+ F SM ++ +VP ++HYGCV DLL R+G L +A +F+ +P +P A +
Sbjct: 339 SGMVSEGLQYFDSMR-EYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWR 397
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC HGAVDL V R+LEL H YV+ SN+ A +W +RK M E G
Sbjct: 398 TLLSACGSHGAVDLGKRVFERILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKG 457
Query: 300 IRKIPAYSLIE 310
+ K+P S IE
Sbjct: 458 VVKVPGCSSIE 468
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 8/207 (3%)
Query: 25 DVVSWTSIINGFVRNG-CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
DVV + +++ G+ R+ EA V M+ V P+ T+VS+L +CA G
Sbjct: 86 DVVWYNTLLRGYARSSDGAAEAARVLARMLEEG--VAPDTYTFVSLLKACAA-ARAG--E 140
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSL 142
G+Q HG ++ ++ LI++Y + G A +F + D V ++NAMI++
Sbjct: 141 EGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAA 200
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
+SR EALV+F EM+ KGL+ +T +VL+ACA +ELG H + K + +
Sbjct: 201 VRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELG-RWIHEYVRKAGLDSL 259
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM 229
++ ++D+ G+ G L +A + + M
Sbjct: 260 VKVNTALIDMYGKCGSLEDAIDVFQGM 286
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 182/311 (58%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +D AI++F M+ +DVVSWTS++ G+ NG + EAI +F M ++ V
Sbjct: 82 LIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKM--RISGVY 139
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ SVLS+CA L + G+Q+H ++++ + S+ + +L+ +Y K G + A
Sbjct: 140 PDQIAVASVLSACAELTV---MDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDA 196
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F +M +DV +W A+I A N R K +L +D+M G + + ITF+ +L AC+
Sbjct: 197 NRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHN 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F +M + + P EHY C++DLLGR+G L+EAK + M PDA V A
Sbjct: 257 GLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKA 316
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L + L EL+P + YV+LSN+++ +W A +R+ M GI
Sbjct: 317 LLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGI 376
Query: 301 RKIPAYSLIEA 311
K P YS IE
Sbjct: 377 CKEPGYSWIET 387
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 8/207 (3%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL-VNEGGLY 83
D VSW S+I G VR G +A+ F+ M ++ +E T SVL+S A + V + +
Sbjct: 5 DEVSWNSLILGCVREGFEEDALSFFQKMRSRD--MKIDEYTLPSVLNSFASMKVMQNAI- 61
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
VH I++ + ALID+Y K G L+ AI VF MV KDV +W ++++ +
Sbjct: 62 ---SVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYS 118
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM 203
N +EA+ +F +M+ G+ ++I +VL+ACA +++ G ++ H+ L K + +
Sbjct: 119 HNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQI-HATLVKSGLESSL 177
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+V + + G + +A +MP
Sbjct: 178 SVDNSLVTMYAKCGSIVDANRAFDNMP 204
>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y ++ + + +F+ M R++ WT++ING+V+NG A+ +F+ M + +R
Sbjct: 278 LIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRK-DRIR 336
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + VSVL +C LV GL GKQVH + ++ E + + ALID+Y K G L+ A
Sbjct: 337 PNRVSLVSVLPACGLLV---GLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYA 393
Query: 121 IRVFKS-MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF + KD TW+++IS+ + + +EAL + EM ++G++ + IT V VL+AC R
Sbjct: 394 RRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCR 453
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV+ G+ +++S+ ++E+ P +E GCVVDLLGR+G L +A +F+R MP P SV G
Sbjct: 454 SGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWG 513
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL A IHG R LLEL+P++ Y+ LSN +A RW+ T++R M E G
Sbjct: 514 SLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRSMMKERG 573
Query: 300 IRKIPAYSLI 309
+RK+P S I
Sbjct: 574 LRKVPGISWI 583
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 17/256 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG-----CFGEAICVFKNMMGNVNLV 59
Y++ + A+ +F+ M +R+V S+ II+G G + + F+ M
Sbjct: 171 YIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRM--QCQGY 228
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL----SVFMGTALIDLYGKVG 115
+ T S+L C ++G G+++H Y+++N + L V MG++LID+Y +
Sbjct: 229 NADAFTVASLLPMCCD--SDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSN 286
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVL 174
L + RVF M +++ W AMI+ N + AL++F EM+ K +R N ++ V+VL
Sbjct: 287 KLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVL 346
Query: 175 TACARAQLVEL-GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
AC LV L G + H+ K E + ++D+ + G L A+ + +
Sbjct: 347 PAC--GLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSK 404
Query: 234 DASVLGALLGACKIHG 249
DA +++ A +HG
Sbjct: 405 DAITWSSIISAYGLHG 420
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD + L+F+++ ++V W S+ING+V+N F AI +F+ MG L
Sbjct: 67 LISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQ-MGRCLL-- 123
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T ++ +S +G + + L LGK +HG LR V + +G +++ +Y + A
Sbjct: 124 PDDYT-LATISKVSGEIQD--LVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDA 180
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALV-----MFDEMKEKGLRANEITFVAVLT 175
++VF M ++V ++N +IS A+ +L F M+ +G A+ T ++L
Sbjct: 181 MKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLP 240
Query: 176 AC 177
C
Sbjct: 241 MC 242
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
L L +Q H IL N + F+ T LI Y G + VF S+ K+V WN++I+
Sbjct: 41 SLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLIN 100
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
N + A+V+F +M + L ++ T + Q + LG +L H + V
Sbjct: 101 GYVKNHQFDNAIVLFRQMG-RCLLPDDYTLATISKVSGEIQDLVLG-KLIHGKSLRIGFV 158
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
+ V+ + R +A + MP + + ++ C G +D
Sbjct: 159 SDIVVGNSVMSMYIRCREFGDAMKVFDEMP-QRNVGSFNVIISGCAALGNLD 209
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++ A +F M ++V+SWT+++ G+ +NG EA+ +F +M N +
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE--IH 368
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q HG L + ++ V + ALI LYGK G LE A
Sbjct: 369 PDDFTLGSVISSCANLAS---LEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHA 425
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M I+D +W A++S A + E + +F+ M G+ + +TFV VL+AC+RA
Sbjct: 426 HQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRA 485
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + + PI +HY C++DLL RAG L EAK F+ MPF PDA
Sbjct: 486 GLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWAT 545
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+++G +++ L +L+P++ Y++LS+I+A +W+ LRK M E G+
Sbjct: 546 LLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGV 605
Query: 301 RKIPAYSLIE 310
+K P +S I+
Sbjct: 606 KKEPGHSWIK 615
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 127/236 (53%), Gaps = 6/236 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++ + A LF+NM ++D +SWT+II G +NG F EA+ FK M +
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEM--GIEGFC 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ SVL++C G + L GKQ+H YI+R + ++F+G+AL+D+Y K ++ A
Sbjct: 268 MDQFTFGSVLTACGGFL---ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M K+V +W AM+ N +EA+ +F +M+ + ++ T +V+++CA
Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANL 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G + FH ++ + ++ L G+ G L A + M + S
Sbjct: 385 ASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS 439
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 106/195 (54%), Gaps = 12/195 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
++ Y K G + +F++M DVVSW S+++G+ NG E++ V+ M+ G+VNL
Sbjct: 77 LLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNL 136
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
R +T + +LSS G V+ LG+Q+HG I + +F+G+ L+D+Y K G +
Sbjct: 137 NRITFSTML-ILSSNRGFVD-----LGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIN 190
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A R+F+ + K++ +N MI+ L EA +FD M EK + I++ ++T
Sbjct: 191 DANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEK----DSISWTTIITGLT 246
Query: 179 RAQLVELGLELFHSM 193
+ L + ++ F M
Sbjct: 247 QNGLFKEAVDKFKEM 261
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P Y +++++ L G L + V +I + ++F L+ Y K+G L
Sbjct: 35 LTNPETFLYNNLINTYGKL---GDLKNARNVFDHIPQP----NLFSWNTLLSAYSKLGYL 87
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTA 176
+ RVF SM DV +WN+++S A N E++ +++ M K+ + N ITF +L
Sbjct: 88 QDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLIL 147
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+LG ++ H + KF + +VD+ + G +++A +P
Sbjct: 148 SSNRGFVDLGRQI-HGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 195/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++ Y K GD++SA LF++M +R+VVSW+ +I + + EA+ +F+ M+ V
Sbjct: 317 MVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAG--VD 374
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVH-GYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P +AT VSVLS+CA L G L LG+ ++ YI+ N+I L+V +G ALID++ K G +
Sbjct: 375 PIDATLVSVLSACAQL---GCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGE 431
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F M ++V +WN MI + A + + +EA+ +F+++K + + ++ITF+ +L +C+
Sbjct: 432 ASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH 491
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LV G F M + + P +EHY C++DLLG+ GLL EA E R MP E D + G
Sbjct: 492 SGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWG 551
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++HG V++ V +L+EL P G YV++S I+A +W++ LR M + G
Sbjct: 552 ALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 612 VKKNPGCSSIE 622
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 36/280 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + +D A +F+ M +RDVVSWT++++G+ R G EA +F M+ V +R
Sbjct: 184 LVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV-VVGGMR 242
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V+ +S+ + G L G +H Y+ + SV + AL+D++GK GC+ A
Sbjct: 243 PNAVTLVAAVSAIGQM---GLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYA 299
Query: 121 IRVFKSMVIKDVCTWNAMISSLASN-------------------------------SREK 149
VF M +KDV +W +M+++ A ++ +
Sbjct: 300 REVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPE 359
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EA+ +F EM G+ + T V+VL+ACA+ ++LG ++ + + ++ + +
Sbjct: 360 EAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNAL 419
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+D+ + G + EA + M E + ++ A +HG
Sbjct: 420 IDMFAKCGDVGEASKLFDEMA-ERNVVSWNTMIMAHAVHG 458
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)
Query: 85 GKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G+ +H L+ V SV +G AL+ Y L+ A +VF M +DV +W ++ A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 144 SNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
EA +F M G+R N +T VA ++A + L+ G+ + H + + V
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGI-MLHKYVTEGGVARS 279
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262
+ +VD+ G+ G + A+E M + D +++ A G DL E +L
Sbjct: 280 VNLDNALVDMFGKCGCVRYAREVFDGMEVK-DVYSWTSMVNAYAKCG--DL--ESAEQLF 334
Query: 263 ELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305
+ P ++ + + ++ L + A L + M+ AG+ I A
Sbjct: 335 KDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 181/302 (59%), Gaps = 6/302 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GYVKN ++ A +F++M +R+VVSWT++I+G+V+N F +A+ +F M R
Sbjct: 209 LVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTE--TR 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ SVL +CAG L +G Q+H I+++ I V T+L+D+Y K G ++ A
Sbjct: 267 PNHFTFSSVLDACAG---SSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAA 323
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+S+ K++ +WNA+I AS+ AL FD MK G +E+TFV VL+AC A
Sbjct: 324 FGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVG-TPDEVTFVNVLSACVHA 382
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F ML K+ + MEHY C+VDL GRAG EA+ +++MPFEPD + GA
Sbjct: 383 GLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGA 442
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC +H ++L R+ L+ H Y VLS I W+ +LR M E GI
Sbjct: 443 LLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKERGI 502
Query: 301 RK 302
+K
Sbjct: 503 KK 504
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLV 59
++ Y+++ + LF+ M +D VSW +++GF R G C + MG +V
Sbjct: 46 VMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQ--MGRAGVV 103
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PN+ T ++L + +++ L +QVH L+VF+G++LI Y + E
Sbjct: 104 -PNDYTISTLLRA---VISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEA 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R F + +KDV +WNA++SS + +A FD+M ++ N I++ ++ +
Sbjct: 160 LGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQR----NIISWTTLVNGYVK 215
Query: 180 AQLVELGLELFHSM 193
+ V +F M
Sbjct: 216 NKQVNKARSVFDDM 229
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 48/267 (17%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F ++ +DV SW ++++ ++ G F +A F M P
Sbjct: 164 FNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQM--------PQ--------------- 200
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
RN + T L++ Y K + +A VF M ++V +W A
Sbjct: 201 ----------------RN-----IISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTA 239
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
MIS N R +AL +F M + R N TF +VL ACA + + +GL+L H + K
Sbjct: 240 MISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQL-HPCIIKS 298
Query: 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-AVDLCHE 256
+ + +VD+ + G + A S+ + + A++G HG A E
Sbjct: 299 GIANDVIWLTSLVDMYAKCGDMDAAFGVFESIR-DKNLVSWNAIIGGYASHGLATRALEE 357
Query: 257 VGRRLLELQPKHCGRYVVLSN-IHAGL 282
R + P VLS +HAGL
Sbjct: 358 FDRMKVVGTPDEVTFVNVLSACVHAGL 384
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 190/310 (61%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G ++ + +FE+M +RDV SW++II G + E + VF M R
Sbjct: 126 LINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM-SREGSCR 184
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P E+ VSVLS+C L G L LG+ H +LRN ++V + T+LID+Y K GC+E+
Sbjct: 185 PEESILVSVLSACTHL---GALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKG 241
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ MV K+ +++ MI+ LA + R EAL +F +M E+GL+ +++ ++ VL+AC A
Sbjct: 242 LSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHA 301
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+ F+ M + + P ++HYGC+V L+GRAG+L++A E +RSMP +P+ V
Sbjct: 302 GLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRG 361
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK H +++ + L EL + G YVVLSN++A +RW +R M G
Sbjct: 362 LLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGF 421
Query: 301 RKIPAYSLIE 310
+ P +SL++
Sbjct: 422 TQTPGFSLVQ 431
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 6/179 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A +F + + + ++I G+V A+ ++ M+ V + TY +
Sbjct: 33 GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERG--VESDNFTYPA 90
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+ +CA L + + G Q+HGYI + + +F+ +LI++YGK G +E + VF+ M
Sbjct: 91 LFKACASLRS---IEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMD 147
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELG 186
+DV +W+A+I++ AS E L +F EM +G R E V+VL+AC ++LG
Sbjct: 148 RRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLG 206
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+K+G + L ++M R VV+W ++I G +NGC E + + NMM RP++
Sbjct: 239 YIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQY-NMMKMAGF-RPDKI 296
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVLS+C+ L G G+Q+H +++ + + ++LI +Y + GCLE +I+ F
Sbjct: 297 TFVSVLSACSELATLGQ---GQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAF 353
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
DV W++MI++ + R +EAL +F +M++ + ANE+TF+++L AC+ + L E
Sbjct: 354 VDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKE 413
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E F M+ K+++ P +EHY CVVDLLGRAG L EA+ +RSMP +PD + LL A
Sbjct: 414 KGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAA 473
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
CK+H ++ + +++L P YV+LSNIHA W + +RKAM + +RK P
Sbjct: 474 CKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEP 533
Query: 305 AYSLIE 310
S +E
Sbjct: 534 GISWLE 539
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY++ GD++SA LF+ M +R++ +W ++I G + +A+ +FK M G L
Sbjct: 134 LINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL-- 191
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SVL CAGL + L G++VH +L+ LS +G++L +Y K G L
Sbjct: 192 PDEFTLGSVLRGCAGLRS---LLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDG 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ KSM I+ V WN +I+ A N +E L ++ MK G R ++ITFV+VL+AC+
Sbjct: 249 EKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSEL 308
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA-KEFMRSMPFEPDASVLG 239
+ G ++ H+ + K ++ ++ + R+G L ++ K F+ F D +
Sbjct: 309 ATLGQGQQI-HAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF--DVVLWS 365
Query: 240 ALLGACKIHG----AVDLCHEV 257
+++ A HG A++L H++
Sbjct: 366 SMIAAYGFHGRGEEALELFHQM 387
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 39/202 (19%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC----- 116
+ + + +L SC L G L+ GKQVH I+ + F+ L++ Y K+G
Sbjct: 61 DPSLFSHLLQSCIKL---GSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSL 117
Query: 117 --------------------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
LE A ++F M +++ TWNAMI+ L K+
Sbjct: 118 VLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQ 177
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGC 208
AL +F EM G +E T +VL CA + + G E+ H+ L K FE+ ++
Sbjct: 178 ALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEV-HACLLKCGFELSSVVG--SS 234
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+ + ++G LS+ ++ ++SMP
Sbjct: 235 LAHMYIKSGSLSDGEKLIKSMP 256
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G++ + +F+ M + DV SW S+I + +NG EA +F +M+ VR
Sbjct: 239 LMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKR-GEVR 297
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T +VL +CA + G L +GK +H +++ E+ ++ +GT+++D+Y K G +E A
Sbjct: 298 YNAVTLSAVLLACA---HSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMA 354
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F + K+V +W M++ + KEA+ +F EM G++ N ITFV+VL AC+ A
Sbjct: 355 RKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHA 414
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F+ M +F+V P +EHY C+VDLLGRAG L EA ++ M +PD V G+
Sbjct: 415 GLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGS 474
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V+L R+L +L P +CG YV+LSNI+A RW+ +R M G+
Sbjct: 475 LLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGL 534
Query: 301 RKIPAYSLIE 310
K P YS++E
Sbjct: 535 LKTPGYSIVE 544
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 14/234 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM----GNV 56
+ID Y K G ++ A LF+ + +R+VVSWTS+I+G+V+N EA+ +FK + +
Sbjct: 127 LIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDY 186
Query: 57 NLVRPNEATYVSVL-----SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111
+ + SVL S+CA + + + + VHG ++ + +G L+D Y
Sbjct: 187 DEIVGVGVGVDSVLLGCVISACARVCVKS---VTECVHGLAVKKGFEGCLAVGNTLMDAY 243
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITF 170
K G + + +VF M DVC+WN++I+ A N EA +F +M ++G +R N +T
Sbjct: 244 AKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTL 303
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
AVL ACA + +++G + H + K E+ + +VD+ + G + A++
Sbjct: 304 SAVLLACAHSGALQIG-KCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARK 356
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 23 KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82
K V SW SII F R+G +A+ F +M ++L PN +T+ + SC+ L + L
Sbjct: 48 KTSVYSWNSIIADFARSGDSLQALYAFSSMR-KLSL-HPNRSTFPCTIKSCSSLYD---L 102
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
GKQ+H +F+ +ALID+Y K G L A ++F + ++V +W +MIS
Sbjct: 103 CAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGY 162
Query: 143 ASNSREKEALVMF-----------DEMKEKGLRANEITFVAVLTACAR 179
N R +EA+ +F DE+ G+ + + V++ACAR
Sbjct: 163 VQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACAR 210
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 179/313 (57%), Gaps = 9/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD+++A +F M +R +VSW+++I+ VR G F EA+ VF M GN +
Sbjct: 155 MVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNG--FK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCL 117
P+ VSVL +CA L G L G+ VH ++ + +V + TAL+D+Y K GC+
Sbjct: 213 PDAVVLVSVLKTCAHL---GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCM 269
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A VF + DV WNAMI LA N K AL +F M +KG NE TFV L AC
Sbjct: 270 NEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCAC 329
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
V+ G ++F SM + P EHYGC+ DLLGRAGLL EA+ + MP EP AS
Sbjct: 330 IHTGRVDEGEDVFRSMR-DHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQ 388
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GAL+ +C +H V + VG++L+EL+P GRYV L N++A W A LRK M E
Sbjct: 389 WGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEE 448
Query: 298 AGIRKIPAYSLIE 310
G +K S IE
Sbjct: 449 RGAKKETGLSFIE 461
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
L V ++ YGK G LE A VF M + + +W+AMI + EAL +FD+M
Sbjct: 147 LDVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM 206
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSM----LGKFEVVPIMEHYGCVVDLLG 214
G + + + V+VL CA +E G + + LG ++E +VD+
Sbjct: 207 TGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLE--TALVDMYC 264
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRY 272
+ G ++EA + D + A++G ++G E+ RR+L+ P
Sbjct: 265 KCGCMNEAWWVFDGVQSH-DVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFV 323
Query: 273 VVL-SNIHAGLERWNRATDLRKAMVEAGI 300
V L + IH G R + D+ ++M + GI
Sbjct: 324 VALCACIHTG--RVDEGEDVFRSMRDHGI 350
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 181/310 (58%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +D A +F+ M RD VSWT+++ + G GE +F +M+ VR
Sbjct: 208 LADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML-RTRGVR 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE TY VL +CA E G+QVHG + ++ S F +AL+ +Y K G + A
Sbjct: 267 PNEFTYAGVLRACAQFAVES---FGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M D+ +W A+IS A N + +EAL FD G++ + +TFV VL+ACA A
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHA 383
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE+FHS+ ++ + +HY CV+DLL R+G A++ + +M +P+ + +
Sbjct: 384 GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWAS 443
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IH V L L E++P++ YV L+NI+A + ++ D+R+ M GI
Sbjct: 444 LLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503
Query: 301 RKIPAYSLIE 310
K+PA S IE
Sbjct: 504 TKMPASSWIE 513
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------GNVNLVRPNEA 64
+ SA LF+ M +RD +W+++++G+ R+G A+ +++ M G N + A
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTALIDLYGKVGCLERAI 121
+ + C G+++H +++R I + + +AL D+Y K G ++ A
Sbjct: 171 LAAAAAARCG--------RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDAR 222
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARA 180
RVF M ++D +W AM+ R E +F M + +G+R NE T+ VL ACA+
Sbjct: 223 RVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQF 282
Query: 181 QLVELGLELFHSMLGK 196
+ G ++ H + K
Sbjct: 283 AVESFGRQV-HGRMAK 297
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A +FE RDV+SW S+I G ++G + A +F+ M +
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE--LE 529
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVLS C N L LGKQ+HG I + + L V +G ALI++Y + G L+ A
Sbjct: 530 PDNITFASVLSGCK---NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-ITFVAVLTACAR 179
VF S+ +DV +W AMI A + +A+ +F +M+ +G R + TF ++L+AC
Sbjct: 587 RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNH 646
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G ++F SM ++ V+P +EHYGC+V LLGRA EA+ + MPF PDA+V
Sbjct: 647 AGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWE 706
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC+IHG + L L+L ++ Y++LSN++A RW+ +R+ M G
Sbjct: 707 TLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRG 766
Query: 300 IRKIPAYSLIE 310
IRK P S IE
Sbjct: 767 IRKEPGRSWIE 777
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + GD+ A LF M KRD++SW +II G+ R GEA+ ++K M V+
Sbjct: 371 LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG--VK 428
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T++ +LS+CA N GK +H ILR+ I + + AL+++Y + G L A
Sbjct: 429 PGRVTFLHLLSACA---NSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ +DV +WN+MI+ A + + A +F EM+ + L + ITF +VL+ C
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ +ELG ++ H + + + + ++++ R G L +A+ S+ D A
Sbjct: 546 EALELGKQI-HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTA 603
Query: 241 LLGACKIHG 249
++G C G
Sbjct: 604 MIGGCADQG 612
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 131/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK + A +F+ M +RDV+SW S+I+ + + G +A +F+ M N +
Sbjct: 68 LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ-NAGFI- 125
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY+S+L++C + L GK++H I++ + +L+ +YGK G L RA
Sbjct: 126 PNKITYISILTAC---YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA 182
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + +DV ++N M+ A + KE L +F +M +G+ +++T++ +L A
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G + H + + + + +V + R G + AK+ + + + D V A
Sbjct: 243 SMLDEGKRI-HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNA 300
Query: 241 LLGACKIHG 249
L+ A HG
Sbjct: 301 LIAALAQHG 309
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 40/292 (13%)
Query: 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65
V+ GD+DSA F+ + RDVV + ++I ++G EA + M + V N T
Sbjct: 275 VRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG--VALNRTT 332
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y+S+L++C+ L GK +H +I + V +G ALI +Y + G L +A +F
Sbjct: 333 YLSILNACS---TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFY 389
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
+M +D+ +WNA+I+ A EA+ ++ +M+ +G++ +TF+ +L+ACA +
Sbjct: 390 TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK---------------------- 223
G ++ H + + + ++++ R G L EA+
Sbjct: 450 G-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 224 ------------EFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+ M++ EPD ++L CK A++L ++ R+ E
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 118/226 (52%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ A +F + RDVVS+ +++ + + E + +F M + + P++
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQM--SSEGISPDKV 230
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+++L + L GK++H + + + +GTAL+ + + G ++ A + F
Sbjct: 231 TYINLLDA---FTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
K + +DV +NA+I++LA + EA + M+ G+ N T++++L AC+ ++ +E
Sbjct: 288 KGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G +L HS + + ++ ++ + R G L +A+E +MP
Sbjct: 348 AG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 53 MGNVNLVRPNE---ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
+ N + RP E ATYV++L +C + L K++H ++ + +F+ LI+
Sbjct: 14 VSNTHQPRPTETDRATYVALLQNC---TRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLIN 70
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
+Y K + A +VFK M +DV +WN++IS A +K+A +F+EM+ G N+IT
Sbjct: 71 MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKIT 130
Query: 170 FVAVLTACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
++++LTAC +E G ++ HS + K ++ P +++ ++ + G+ G L A++
Sbjct: 131 YISILTACYSPAELENGKKI-HSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQ 184
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 195/314 (62%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDV----VSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G+ KNG + A +F M V ++WT++++G V+NG A+ VF+ M +V
Sbjct: 464 LIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQ-DV 522
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+RPN + S LS C + L G+ +HGY++R ++ S+ + T+++D+Y K G
Sbjct: 523 G-IRPNSMSITSALSGCTSMAL---LKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGS 578
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+ A VFK K++ +NAMIS+ AS+ + +EALV+F +M+++G+ + IT +VL+A
Sbjct: 579 LDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSA 638
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ L++ G+++F M+ + ++ P EHYGC+V LL G L EA + +MP PDA
Sbjct: 639 CSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAH 698
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+LG+LL AC + ++L + + LL+L P + G YV LSN++A + +W++ ++LR M
Sbjct: 699 ILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMK 758
Query: 297 EAGIRKIPAYSLIE 310
E G+RKIP S IE
Sbjct: 759 EKGLRKIPGCSWIE 772
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F+ M +R+ V+W S++ + +NG EAI VF+ M ++
Sbjct: 196 LVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMR-----LQ 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T V++ N + G+Q HG + + L +G+++++ Y KVG +E A
Sbjct: 251 GVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEA 310
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M +KDV TWN +++ A ++AL M M+E+GLR + +T A+L A
Sbjct: 311 EVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADT 370
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ + LG++ H+ K + + ++D+ + G + A+ S + D +
Sbjct: 371 RDLVLGMKA-HAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVF-SCVRKKDIVLWNT 428
Query: 241 LLGACKIHG 249
+L AC G
Sbjct: 429 MLAACAEQG 437
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A LF + +V SW +II R G EA+ + M + + P+
Sbjct: 98 YAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDG--LPPDNF 155
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLERAIRV 123
+VL +C L + GK VH ++++ + V++ T+L+D+YGK G +E A +V
Sbjct: 156 VLPNVLKACGVL---KWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKV 212
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F M ++ TWN+M+ + A N +EA+ +F EM+ +G+ + TACA ++ V
Sbjct: 213 FDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAV 272
Query: 184 ELGLELFH-SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
G + +++G E+ ++ +++ + GL+ EA+ R+M
Sbjct: 273 GEGRQGHGLAVVGGLELDNVLG--SSIMNFYFKVGLIEEAEVVFRNM 317
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 122/251 (48%), Gaps = 15/251 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAI---CVFKNMMGNVN 57
+++ Y K G ++ A ++F NM +DVV+W ++ G+ + G +A+ CV +
Sbjct: 297 IMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMRE-----E 351
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+R + T ++L+ A + L LG + H Y ++N+ V + + +ID+Y K G +
Sbjct: 352 GLRFDCVTLSALLAVAA---DTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRM 408
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A RVF + KD+ WN M+++ A EAL +F +M+ + + N +++ +++
Sbjct: 409 DCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGF 468
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPD 234
+ V +F M V+P + + ++ L + G S A R M P+
Sbjct: 469 FKNGQVAEARNMFAEMCSS-GVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPN 527
Query: 235 ASVLGALLGAC 245
+ + + L C
Sbjct: 528 SMSITSALSGC 538
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G MD A +F + K+D+V W +++ G GEA+ +F M + V
Sbjct: 398 IIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQM--QLESVP 455
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++ N ++ F K G + A
Sbjct: 456 PNVVSW----------------------------NSLIFGFF----------KNGQVAEA 477
Query: 121 IRVFKSM----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+F M V+ ++ TW M+S L N A+++F EM++ G+R N ++ + L+
Sbjct: 478 RNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSG 537
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C L++ G + H + + ++ + ++D+ + G L AK + M +
Sbjct: 538 CTSMALLKHGRAI-HGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFK-MCSTKELY 595
Query: 237 VLGALLGACKIHG 249
V A++ A HG
Sbjct: 596 VYNAMISAYASHG 608
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLERAI 121
A Y ++L C V E L L Q+H +++ L+ F+ + L+ LY K G E A
Sbjct: 52 AIYGTLLQGC---VYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPAT 108
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
R+F+ +V +W A+I +EAL + +M++ GL + VL AC +
Sbjct: 109 RLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLK 168
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
V G + ++ + + +VD+ G+ G + +A + M D +
Sbjct: 169 WVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVT 223
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A F + +D V W S+I +NG EAI +F+ M + +
Sbjct: 392 IMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM--GMAGTK 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L L+ GK++H +++R +F +ALID+Y K G L+ A
Sbjct: 450 YDCVSISAALSACANLP---ALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +M K+ +WN++I++ ++ R K++L +F M G++ + +TF+A+++AC A
Sbjct: 507 CRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHA 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F M + ++ MEHY C+VDL GRAG L+EA + SMPF PDA V G
Sbjct: 567 GQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGT 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++HG V+L R L +L P++ G YV+LSN+HA +W +R M E G+
Sbjct: 627 LLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGV 686
Query: 301 RKIPAYSLIE 310
+K+P S I+
Sbjct: 687 QKVPGCSWID 696
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 150/287 (52%), Gaps = 16/287 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K D++ A +F+ D+V T++I+G+V NG A+ +F+ ++ +R
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLL--QERMR 348
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T SVL +CAGL L LGK++HG+IL+N S ++G+A++D+Y K G L+ A
Sbjct: 349 ANSVTLASVLPACAGLA---ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 405
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F + KD WN+MI+S + N + +EA+ +F +M G + + ++ A L+ACA
Sbjct: 406 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 465
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G E+ M+ G F E ++D+ + G L A +M E +
Sbjct: 466 PALHYGKEIHAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTME-EKNEVSWN 522
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAG 281
+++ A HG +++L H G +QP H ++S HAG
Sbjct: 523 SIIAAYGNHGRLKDSLNLFH--GMLGDGIQPDHVTFLAIISACGHAG 567
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 25/270 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +NG + A LF+ M +D V W ++NG+V+NG + A VF M
Sbjct: 188 LIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM--RRTETN 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN--EIVLSVFMGTALIDLYGKVGCLE 118
PN T+ VLS CA +E + G Q+HG ++ + E+ V ALID+Y K +E
Sbjct: 246 PNSVTFACVLSVCA---SEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVE 302
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F D+ AMIS N AL +F + ++ +RAN +T +VL ACA
Sbjct: 303 MARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 362
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYG------CVVDLLGRAGLLSEAKEFMRSMPFE 232
+ LG EL +L H G ++D+ + G L A + + +
Sbjct: 363 GLAALTLGKELHGHILKN-------GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-D 414
Query: 233 PDASVLGALLGACKIHG----AVDLCHEVG 258
DA +++ +C +G A+DL ++G
Sbjct: 415 KDAVCWNSMITSCSQNGKPEEAIDLFRQMG 444
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W +I GF G F A+ + M+G L P++ T+ V+ +C GL + LG+ V
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTL--PDKYTFPYVIKACGGL---NSVALGRVV 169
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H I L VF+G++LI Y + GC+ A +F M KD WN M++ N
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW 229
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
A +F EM+ N +TF VL+ CA ++ G +L
Sbjct: 230 DNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
VS+L +C + GL G+Q H +L N I + +GT L+ +Y G A +F
Sbjct: 50 VSILQTC---TDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQ 106
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ + WN MI + AL+ + +M G ++ TF V+ AC V LG
Sbjct: 107 LRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG 166
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D Y G + A LF+ + ++DVV+W +I+ RN +A+ +F+ M L +
Sbjct: 168 MMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQ 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +L +CA L L G+++HGYI ++ + +LI +Y + G +++A
Sbjct: 228 PDKVTCLLLLQACADL---NALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K+V +W+AMIS L+ N +EA+ F EM++ G+ + TF AVL+AC+
Sbjct: 285 YEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHC 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ F M +F + P + HYGC+VDLLGRAG+L +A E + SM PDA++
Sbjct: 345 GLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRT 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG +L + L+EL+ + G YV+L NI++ W++ T+LRK M E GI
Sbjct: 405 LLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGI 464
Query: 301 RKIPAYSLIE 310
P + IE
Sbjct: 465 YTTPCCTTIE 474
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 8/222 (3%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D+ + LF+ + V + +++ + + E + ++++M VR + +
Sbjct: 76 DLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDM--ERQGVRADPLSSSFA 133
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
+ SC L++ L G Q+H I N + T+++DLY G E A ++F +
Sbjct: 134 VKSCIKLLS---LLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQ 190
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGL 187
KDV WN +IS L N R ++AL +F+ M+ + +++T + +L ACA +E G
Sbjct: 191 KDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFG- 249
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E H + + ++ + R G + +A E M
Sbjct: 250 ERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKM 291
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K+G M A +F+ M RD++SW +I G+ +NG G A+ F M +V
Sbjct: 729 LISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTAL-QFAYQMQEQGVVL 787
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ ++VS+L++C+ L GK+VH I++ ++ V +G ALI +Y K G LE A
Sbjct: 788 -NKFSFVSILNACSSF---SALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEA 843
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + K+V TWNAMI++ A + +AL F+ M ++G++ + TF ++L+AC +
Sbjct: 844 QEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHS 903
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G +F S+ + + P +EHYGC+V LLGRAG EA+ + MPF PDA+V
Sbjct: 904 GLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWET 963
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V L L+L ++ YV+LSN++A RW+ +R+ M GI
Sbjct: 964 LLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGI 1023
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 1024 RKEPGRSWIE 1033
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + GD+ A LF M KRD++SW +II G+ R GEA+ ++K M V+
Sbjct: 426 LISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG--VK 483
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T++ +LS+C N GK +H ILR+ I + + AL+++Y + G + A
Sbjct: 484 PGRVTFLHLLSAC---TNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEA 540
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ +D+ +WN+MI+ A + + A +F EMK++GL ++ITF +VL C
Sbjct: 541 QNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNP 600
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ +ELG ++ H ++ + + + ++++ R G L +A E S+
Sbjct: 601 EALELGRQI-HMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y++ G + A +F ++ R+V+SWT++I GF G +A +F M + +
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG--FK 685
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P ++T+ S+L +C ++ L GK+V +IL + L +G ALI Y K G + A
Sbjct: 686 PVKSTFSSILKAC---MSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDA 742
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ +WN MI+ A N AL +M+E+G+ N+ +FV++L AC+
Sbjct: 743 RKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSF 802
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + H+ + K ++ + ++ + + G L EA+E + E + A
Sbjct: 803 SALEEGKRV-HAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT-EKNVVTWNA 860
Query: 241 LLGACKIHG 249
++ A HG
Sbjct: 861 MINAYAQHG 869
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 8/231 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A +FE RD++SW S+I G ++G + A +F M +
Sbjct: 527 LMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEG--LE 584
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ SVL C N L LG+Q+H I+ + + L V +G ALI++Y + G L+ A
Sbjct: 585 PDKITFASVLVGCK---NPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDA 641
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ ++V +W AMI A +++A +F +M+ G + + TF ++L AC +
Sbjct: 642 YEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSS 701
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G ++ H + +E+ + + ++ ++G +++A++ MP
Sbjct: 702 ACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP 750
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 120/230 (52%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K D+ SA +F + +RDVVS+ +++ + + E I +F M + +
Sbjct: 224 LLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM--SSEGIP 281
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ TY+++L + L GK++H + + + +GTAL ++ + G + A
Sbjct: 282 PDKVTYINLLDA---FTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGA 338
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ ++ +DV +NA+I++LA + +EA + +M+ G+ N T+++VL AC+ +
Sbjct: 339 KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ + G EL HS + + ++ ++ + R G L A+E +MP
Sbjct: 399 KALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP 447
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 99/190 (52%), Gaps = 5/190 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+V+ GD+ A E RDVV + ++I ++G + EA + M + ++ N
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM--NRT 386
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+SVL++C+ L G+ +H +I V +G +LI +Y + G L RA +F
Sbjct: 387 TYLSVLNACS---TSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELF 443
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M +D+ +WNA+I+ A EA+ ++ +M+ +G++ +TF+ +L+AC +
Sbjct: 444 NTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYS 503
Query: 185 LGLELFHSML 194
G + +L
Sbjct: 504 DGKMIHEDIL 513
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK + A +F M +RDV+SW S+I+ + + G +A +F+ M +
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ-TAGFI- 180
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ TY+S+L++C + L GK++H I+ + +L+++YGK L A
Sbjct: 181 PSKITYISILTAC---CSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSA 237
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + +DV ++N M+ A + +E + +F +M +G+ +++T++ +L A
Sbjct: 238 RQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTP 297
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G + H + + + + + R G ++ AK+ + + + D V A
Sbjct: 298 SMLDEGKRI-HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFA-DRDVVVYNA 355
Query: 241 LLGACKIHG 249
L+ A HG
Sbjct: 356 LIAALAQHG 364
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 102/206 (49%), Gaps = 10/206 (4%)
Query: 53 MGNVNLVRP---NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
+ N RP N A YV ++ +C + L K++H ++ + +F+ LI+
Sbjct: 69 LSNAYQPRPTETNRAAYVDLVQNC---TRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLIN 125
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
+Y K + A +VF M +DV +WN++IS A +K+A +F+EM+ G ++IT
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185
Query: 170 FVAVLTACARAQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228
++++LTAC +E G ++ ++ ++ P +++ ++++ G+ L A++
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSG 243
Query: 229 MPFEPDASVLGALLGACKIHGAVDLC 254
+ + D +LG V+ C
Sbjct: 244 I-YRRDVVSYNTMLGLYAQKAYVEEC 268
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++ A LFE ML +D+V+WT +I + + E++ +F M V
Sbjct: 142 LVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRM--REEGVV 198
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+++CA L G ++ + + YI+RN L V +GTA+ID+Y K G +E A
Sbjct: 199 PDKVAMVTVVNACAKL---GAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESA 255
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K+V +W+AMI++ + R K+A+ +F M + N +TFV++L AC+ A
Sbjct: 256 REVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHA 315
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E GL F+SM + V P ++HY C+VDLLGRAG L EA + +M E D + A
Sbjct: 316 GLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSA 375
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH ++L + LLELQP++ G YV+LSNI+A +W + R M + +
Sbjct: 376 LLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKL 435
Query: 301 RKIPAYSLIE 310
+KIP ++ IE
Sbjct: 436 KKIPGWTWIE 445
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 128/256 (50%), Gaps = 14/256 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y ++ +D A LF+ + RD +W+ ++ GF + G F+ ++ V P+
Sbjct: 45 YAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCG--VTPDNY 102
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V+ +C + L +G+ +H +L++ ++ F+ +L+D+Y K +E A R+F
Sbjct: 103 TLPFVIRTCR---DRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLF 159
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-AQLV 183
+ M+ KD+ TW MI + A + E+LV+FD M+E+G+ +++ V V+ ACA+ +
Sbjct: 160 ERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMH 218
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ + F + I+ ++D+ + G + A+E M E + A++
Sbjct: 219 RARFANDYIVRNGFSLDVILG--TAMIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIA 275
Query: 244 ACKIHG----AVDLCH 255
A HG A+DL H
Sbjct: 276 AYGYHGRGKDAIDLFH 291
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY ++G MD A LFE M +R+V+SW+ +I+G VR G EA+ F++M+ +R
Sbjct: 251 MIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCG--IR 308
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ V +S+CA L G L G+ +H Y+ + +++ V + TALID+Y K G ++ A
Sbjct: 309 PDRVAAVGAVSACAQL---GALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+SM + V TWN MI L ++ +A+++F M+ + + ++++ +A+LTAC A
Sbjct: 366 MLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHA 425
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GLE+FH M F + P +EHYG +VDLLGRAG L +A+ + +MP EP + G+
Sbjct: 426 GLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGS 485
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L RL L G YV+LSNI+A W +RK M + G+
Sbjct: 486 LLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGM 545
Query: 301 RKIPAYSLIE 310
RK S+IE
Sbjct: 546 RKDIGRSVIE 555
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 43/230 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G+M A LF+ M +RD SW ++I+G+ + G
Sbjct: 187 MVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQG-------------------- 226
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
G+ +++ + ++V ++ID Y + G ++ A
Sbjct: 227 ------------------GAGVDRARELFDQMTERDLVC----WNSMIDGYARHGRMDEA 264
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ M ++V +W+ +I KEAL F M G+R + + V ++ACA+
Sbjct: 265 RSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQL 324
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+E G HS L K +V+ + ++D+ + G + A SMP
Sbjct: 325 GALEQG-RWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMP 373
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL-- 187
+D WN I L + R + AL+ F M+ G+R + TF AVL AC A GL
Sbjct: 77 RDPFPWNTAIR-LHAPGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135
Query: 188 --ELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E LG F V ++ Y ++D + + EA R +
Sbjct: 136 HAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDL 181
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 194/323 (60%), Gaps = 18/323 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-------------EAIC 47
+++ Y K G + + LF+ + + D+ +W +++ + ++ EA+
Sbjct: 146 LLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALH 205
Query: 48 VFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107
+F +M ++ ++PNE T V+++S+C+ L G L G HGY+LRN + L+ F+GTAL
Sbjct: 206 LFCDM--QLSQIKPNEVTLVALISACSNL---GALSQGAWAHGYVLRNNLKLNRFVGTAL 260
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
+D+Y K GCL A ++F + +D +NAMI A + +AL ++ MK + L +
Sbjct: 261 VDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDG 320
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
T V + AC+ LVE GLE+F SM G + P +EHYGC++DLLGRAG L EA+E ++
Sbjct: 321 ATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQ 380
Query: 228 SMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
MP +P+A + +LLGA K+HG +++ + L+EL+P+ G YV+LSN++A + RWN
Sbjct: 381 DMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWND 440
Query: 288 ATDLRKAMVEAGIRKIPAYSLIE 310
+R M + G+ K+P +SL+E
Sbjct: 441 VKRVRMLMKDHGVDKLPGFSLVE 463
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFM 103
A ++ +++ + L +PN T+ S+ +CA + L G +H ++L+ + F+
Sbjct: 87 AFSLYNHILTHKTL-QPNSFTFPSLFKACA---SHPWLQHGPPLHAHVLKFLQPPYDPFV 142
Query: 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA--------SNSREK-----E 150
+L++ Y K G L + +F + D+ TWN M+++ A S S E E
Sbjct: 143 QNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLE 202
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACA 178
AL +F +M+ ++ NE+T VA+++AC+
Sbjct: 203 ALHLFCDMQLSQIKPNEVTLVALISACS 230
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 181/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + +M A LF+ ++ + SW ++I+G +NG AI +F+ M N V PN
Sbjct: 177 YCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNN--VNPNPV 234
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+LS+CA + G L LG+ VH I N +V++ TALID+Y K G + A +F
Sbjct: 235 TVTSILSACAQI---GALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELF 291
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWNAMIS + +EAL +F +M ++ +TF++VL AC+ A LV+
Sbjct: 292 DLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVK 351
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G +FH+M+ F P+ EHY C+VD+LGRAG L +A EF+++MP EP V GALLGA
Sbjct: 352 EGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGA 411
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C IH +L H +L EL P++ G YV++SNI++ ++ +A +R+ + + K P
Sbjct: 412 CMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTP 471
Query: 305 AYSLIE 310
+LIE
Sbjct: 472 GCTLIE 477
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + K G+++ A LLF + K+D++S ++I+GF NG +++ +FK ++ + R
Sbjct: 72 LISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE--R 129
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ +T V ++ + G YL +HG+ ++ IV + TAL +Y ++ + A
Sbjct: 130 VSSSTIVGLIPVYSPF---GHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFA 186
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N A+ +F M++ + N +T ++L+ACA+
Sbjct: 187 RQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQI 246
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG E HS++ + ++D+ + G ++ A+E MP E + A
Sbjct: 247 GALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP-EKNEVTWNA 304
Query: 241 LLGACKIHG 249
++ +HG
Sbjct: 305 MISGYGLHG 313
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
+I+GFV+N CF ++I VF +M+ N R + T ++VL + A L L LG Q+
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLG-NGPRFDLTTVIAVLPAVAELQE---LKLGMQILCL 56
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
++ V + T LI L+ K G +E A +F + KD+ + NAMIS N +++
Sbjct: 57 AIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDS 116
Query: 152 LVMFDEMKEKGLRANEITFVAVL 174
+ +F E+ G R + T V ++
Sbjct: 117 VRLFKELLSSGERVSSSTIVGLI 139
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + A LF+ M +++ V+W ++I+G+ +G EA+ +F +M+ + V+
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSS--VK 331
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++SVL +C AGLV EG VH + E + + ++D+ G+ G L+
Sbjct: 332 PTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGF--EPLAEHY--ACMVDILGRAGQLK 387
Query: 119 RAIRVFKSMVIKD-VCTWNAMISS 141
+A+ K+M ++ W A++ +
Sbjct: 388 KALEFIKAMPVEPGPPVWGALLGA 411
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 184/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M+ A +F M +D++SW ++I G+ +N EA+ +F +M V ++
Sbjct: 140 LMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM---VLEMK 196
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +L +CA L + L GK+VHG+ILRN + AL+D+Y K G A
Sbjct: 197 PDGTTLACILPACASLAS---LDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLA 253
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ TW MI+ + A+ F+EM++ G+ +E++F+++L AC+ +
Sbjct: 254 RLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHS 313
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F+ M + V P +EHY C+VDLL R+G L+ A +F++SMP EPDA++ GA
Sbjct: 314 GLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGA 373
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L +V + EL+P++ G YV+L+N +A E+W LR+ + G+
Sbjct: 374 LLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGL 433
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 434 KKNPGCSWIE 443
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D AIL+F+ M R VV+WTS+I + R G EAI +F M + V
Sbjct: 39 LLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEM--DREGVS 96
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VL +CA G L GK VH YI N++ ++F+ AL+D+Y K G +E A
Sbjct: 97 PDIFTITTVLHACAC---NGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDA 153
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +KD+ +WN MI + NS EAL +F +M + ++ + T +L ACA
Sbjct: 154 NSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASL 212
Query: 181 QLVELGLELFHSML 194
++ G E+ +L
Sbjct: 213 ASLDRGKEVHGHIL 226
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y ++G ++ A +F+ M ++VVSW S+I+ ++R G + EA+ +F N M N +V
Sbjct: 333 MISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF-NKMRNSRVV- 390
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS+L++C+ L G L +GK++H YIL N+ V + +LID+Y K G + A
Sbjct: 391 PDEATLVSILAACSQL---GDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 447
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F M K++ +WN +I +LA + EA+ +F+EM+ G +EIT +L+AC+ +
Sbjct: 448 LDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHS 507
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++GL F M + V +EHY C+VDLLGR GLL EA E + MP +PD V GA
Sbjct: 508 GLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGA 567
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ ++ ++LLEL+P G YV++SNI+ +RW +RK M++ GI
Sbjct: 568 LLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGI 627
Query: 301 RKIPAYSLIE 310
+K A S IE
Sbjct: 628 KKGRAISSIE 637
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+ A +F+ + + + + S+I G+ + +A+ +F+ M+ + + PNE T
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMI--CSGLSPNEFTLPF 219
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +C + + VHG ++ I VF+ ALI +Y G + A ++F +
Sbjct: 220 VLKACGC---KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 276
Query: 129 IKDVCTWNAMI----------------SSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K + +WN+MI A A +FD +EK N +++ +
Sbjct: 277 DKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEK----NVVSWTS 332
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSM 229
+++A A+ +E+ ++F M GK VV C + R G EA + MR+
Sbjct: 333 MISAYAQHGSIEVARQIFDQMPGK-NVVSWNSMISCYL----REGQYREALDLFNKMRNS 387
Query: 230 PFEPDASVLGALLGACKIHG 249
PD + L ++L AC G
Sbjct: 388 RVVPDEATLVSILAACSQLG 407
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T++I Y + G +E A ++F M K+V +WN+MIS + +EAL +F++M+ +
Sbjct: 331 TSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV 390
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLGRAGLLSE 221
+E T V++L AC++ + +G ++ + +L G + V Y ++D+ + G +
Sbjct: 391 PDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL----YNSLIDMYAKCGPVVT 446
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHG 249
A + MP + S ++GA +HG
Sbjct: 447 ALDIFLEMPGKNLVS-WNVIIGALALHG 473
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++ AI +F M RD V WT +I+G VRNG F + VF+ M V V
Sbjct: 197 MIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM--QVKGVE 254
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+V VLS+CA L G L LG+ +H Y+ + + ++ F+ ALI++Y + G ++ A
Sbjct: 255 PNEVTFVCVLSACAQL---GALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEA 311
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + +KDV T+N+MI LA + + EA+ +F EM ++ +R N ITFV VL AC+
Sbjct: 312 QALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHG 371
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+LG E+F SM + P +EHYGC+VD+LGR G L EA +F+ M E D +L +
Sbjct: 372 GLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCS 431
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIH + + +V + L E G +++LSN +A L RW+ A ++R+ M + GI
Sbjct: 432 LLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGI 491
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 492 IKEPGCSSIE 501
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 38/276 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K +D AI LF +V +TS+I+GFV G + +AI +F M+ +++ N A
Sbjct: 69 YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRK-HVLADNYA 127
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE------ 118
++L +C V + L GK+VHG +L++ + L + L++LYGK G LE
Sbjct: 128 V-TAMLKAC---VLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMF 183
Query: 119 -------------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
AI VF M +D W +I L N L
Sbjct: 184 DGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLE 243
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+F EM+ KG+ NE+TFV VL+ACA+ +ELG H+ + K V G ++++
Sbjct: 244 VFREMQVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRKCGVEVNRFVAGALINMY 302
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
R G + EA+ + + D S +++G +HG
Sbjct: 303 SRCGDIDEAQALFDGVRVK-DVSTYNSMIGGLALHG 337
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 183/311 (58%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+K+GD+ +A +F +M ++VVSWTS+I+G V G EA+ + M N
Sbjct: 160 MIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQ-NAGF-E 217
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ S+L++CA L G L G+ +H Y+L N + + +G AL+++Y K G +E A
Sbjct: 218 LDGVAIASLLTACANL---GALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEA 274
Query: 121 IRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ VF + KDV W AMI A + R EAL F+ M+ +G+R N ITF AVL AC+
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACS 334
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G ELF SM + V P +EHYGC+VDLLGR+G L EAKE ++ MP +P A +
Sbjct: 335 YGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIW 394
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC IH L +VG L+E+ H GRY+ L+ I A +W A ++R M
Sbjct: 395 GALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSL 454
Query: 299 GIRKIPAYSLI 309
G+ P S +
Sbjct: 455 GVPISPGKSSV 465
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDL--YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
KQ+ +++ I+ + T + L VG L A RVF + + WNA+I + +
Sbjct: 5 KQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYS 64
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++ + A + + +M + N TF +L AC
Sbjct: 65 NSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRAC 98
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 186/309 (60%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY K G +D A LF+ M RDV+++ S+I G++ +G +A+ +F M + +R
Sbjct: 310 IIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQM--RRHGMR 367
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VS+L++CA L G L G+ +H I + + V++GTAL+D+Y K G ++ A
Sbjct: 368 ADNFTVVSLLTACASL---GALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +DV TW AMI+ LA N K+AL F +MK G + +T++AVLTAC+ +
Sbjct: 425 TAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G F+ M ++ P +EHYGC++DLL R+GLL EA +++MP +P+A + G+
Sbjct: 485 SLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H +DL LL+L P+ YV L NI+ +W A +R M E G+
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV 604
Query: 301 RKIPAYSLI 309
+K YS I
Sbjct: 605 KKTAGYSSI 613
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 37/210 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G V+ G +D A L +R+VVSWTS+I G+ R G +A+ F M+ + V
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDG--VA 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + LS+C+ L N L + G + I ++ + ALID+Y K G + +A
Sbjct: 235 PDEVAVIGALSACSKLKNLDLGRLLHLLVG---QKRIRMTDNLVVALIDMYAKCGDIAQA 291
Query: 121 IRVFKS--------------------------------MVIKDVCTWNAMISSLASNSRE 148
VF + M +DV T+N+MI+ + R
Sbjct: 292 QAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRL 351
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACA 178
++AL +F +M+ G+RA+ T V++LTACA
Sbjct: 352 RDALQLFMQMRRHGMRADNFTVVSLLTACA 381
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
+ G L+ A R+ ++V +W ++I+ + R +A+ F+ M G+ +E+ +
Sbjct: 183 RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIG 242
Query: 173 VLTACAR 179
L+AC++
Sbjct: 243 ALSACSK 249
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 193/309 (62%), Gaps = 7/309 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K G+++ A +FE M +DVV+WTS+I+ +V+N C +A+ +F+ M+ ++ L R
Sbjct: 181 MIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML-SLGL-R 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCLER 119
P+ VSVLS+ A L G + GK +H Y+ N+I LS F+G+ALID+Y K G +E
Sbjct: 239 PDGPAIVSVLSAIADL---GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIEN 295
Query: 120 AIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF+S+ + ++ WN+MIS LA + +EAL +F EM+ + NEITF+ +L+ C+
Sbjct: 296 AYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCS 355
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G F SM K+++VP ++HYGC++DL GRAG L +A +++MPFE D
Sbjct: 356 HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAW 415
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
A+L A HG +++ R +EL P YV+LSNI+A RW+ +R M +
Sbjct: 416 KAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQR 475
Query: 299 GIRKIPAYS 307
G++KI S
Sbjct: 476 GVKKIAGCS 484
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 43/312 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G +D A +F + + + ++I GF E++ ++ M+ +N E +
Sbjct: 54 SGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIP 113
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------- 112
SVL +C L+ G+QVHG +L+ + F+G +++ +Y
Sbjct: 114 SVLKACGKLL---AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRM 170
Query: 113 ----------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
K G +E A +VF++M KDV TW +MIS+ N +AL +F
Sbjct: 171 PNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFR 230
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGR 215
EM GLR + V+VL+A A VE G + H+ + ++ G ++D+ +
Sbjct: 231 EMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSK 289
Query: 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHCGR 271
G + A RS+ + +++ IHG A+D+ E+ R ++++P
Sbjct: 290 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMER--MDIEPNEITF 347
Query: 272 YVVLSNI-HAGL 282
+LS H GL
Sbjct: 348 LGLLSTCSHGGL 359
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G + A +F+ M+++D+V W+++I+G+ + EA+ +F M +
Sbjct: 289 MLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRR--RIV 346
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +SV+S+CA N G L K +H Y +N ++ + ALID+Y K G L +A
Sbjct: 347 PDQITMLSVISACA---NVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKA 403
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M K+V +W++MI++ A + A+ +F MKE+ + N +TF+ VL AC+ A
Sbjct: 404 REVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHA 463
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM+ + + P EHYGC+VDL RA L +A E + +MPF P+ + G+
Sbjct: 464 GLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGS 523
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC+ HG ++L RLLEL+P H G VVLSNI+A +RW+ +RK M G+
Sbjct: 524 LMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGV 583
Query: 301 RKIPAYSLIE 310
K A S IE
Sbjct: 584 SKEKACSRIE 593
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 42/296 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + A LF+ M RDVV+W +I+G+ +N + + +++ M +
Sbjct: 157 LIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM--KTSGTE 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL---------- 110
P+ +VLS+CA + G L GK +H +I N + + T+L+++
Sbjct: 215 PDAIILCTVLSACA---HAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLA 271
Query: 111 ---------------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
Y K+G ++ A +F MV KD+ W+AMIS A + +
Sbjct: 272 REVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPL 331
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACAR-AQLVELG-LELFHSMLGKFEVVPIMEHYG 207
EAL +F+EM+ + + ++IT ++V++ACA LV+ + + G +PI
Sbjct: 332 EALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPI---NN 388
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
++D+ + G L +A+E +MP + +++ A +HG D + R+ E
Sbjct: 389 ALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSAIALFHRMKE 443
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 80 GGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
L LG ++HG + + F+ +ALI +Y G + A +F M +DV TWN M
Sbjct: 129 SALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIM 188
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-- 196
I + N+ L +++EMK G + I VL+ACA A + G + H +
Sbjct: 189 IDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG-KAIHQFIKDNG 247
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
F V ++ +V++ G + A+E +P
Sbjct: 248 FRVGSHIQ--TSLVNMYANCGAMHLAREVYDQLP 279
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 174/310 (56%), Gaps = 42/310 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+VK G+++ A LF M RDVVSW S++ + + G EA+ +F M
Sbjct: 12 MLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQA------ 65
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ ++ +GTAL+D+Y K G + A
Sbjct: 66 ------------------------------------VGVNSIVGTALVDMYAKCGKISLA 89
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M KDV WN +I+ +A KEA +F EMKE G+ N+ITFVA+L+AC+ A
Sbjct: 90 TQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHA 149
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ G +L M + + P +EHYGCV+DLL RAGLL EA E + +MP EP+ LGA
Sbjct: 150 GMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGA 209
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IHG +L VG+RL+ LQP H GRY++LSNI+A ++W+ A +R M GI
Sbjct: 210 LLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 269
Query: 301 RKIPAYSLIE 310
K+P S+IE
Sbjct: 270 SKVPGVSVIE 279
>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
Length = 529
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 183/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+ +A LF+ M +D+ +W ++I+ + +NGC EA+ +F M+ V
Sbjct: 221 MISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVA 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ SV+S+C+ L G L G V ++ + L + TALIDLY K G ++RA
Sbjct: 281 PNEKTFSSVISACSQL---GDLRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMDRA 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + +DV +++AMI + + EA+ +F EM + + N +TFV +L+A + A
Sbjct: 338 FDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHA 397
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E F SM K+++ P MEHY +VD+LGR G L EA + + +P P ASV GA
Sbjct: 398 GLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIPVCPHASVWGA 457
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L + EL+PK G Y++L NI+A ++W++ LRK M E G+
Sbjct: 458 LLLACRLHNNIELGEVAASKCFELEPKESGYYILLGNIYAQAKKWDKVKGLRKMMAERGL 517
Query: 301 RKIPAYSLIE 310
K P S +
Sbjct: 518 SKTPGSSWVH 527
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 127/252 (50%), Gaps = 25/252 (9%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+ GD+ +A +FE M +RDVVSW S++ G + G EAI +F M N A++
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQM------PETNAASW 187
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+++S G + +G L +++ + +RN + +I Y K G ++ A +F
Sbjct: 188 NALVS---GFMAQGHLAQAQELFERMPIRNNVSW-----ITMISGYAKAGDVQAAANLFD 239
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLV 183
M KD+ WNAMIS A N +EAL +F+ M + + NE TF +V++AC++ +
Sbjct: 240 RMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDL 299
Query: 184 ELGL--ELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
GL E F +G V + +H ++DL ++G + A + R + D A
Sbjct: 300 RFGLWVESFMGYVG----VHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSR-DVVSYSA 354
Query: 241 LLGACKIHGAVD 252
++ C +HG ++
Sbjct: 355 MIVGCGMHGKLN 366
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 190/310 (61%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K GDM SA LF+ +RD+++W+++I+G+ +NG EA+ F M + V+
Sbjct: 261 MIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEM--SSRNVK 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P++ S++ +C+ L G L L K V Y R + L + ALID+ K G +ER
Sbjct: 319 PDKFVLTSLMLACSQL---GNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMER 375
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F+ M +D+ ++ +++ L+ + +A+ +F+ M + L +++ F +LTAC+R
Sbjct: 376 AMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSR 435
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV+ G F M K+ +VP ++HY C+VDLL R+G L EA E ++S+P + A G
Sbjct: 436 AGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWG 495
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACK++ +L V RL+E++P++ G YV+LSNI+A +RW + +R M E G
Sbjct: 496 ALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERG 555
Query: 300 IRKIPAYSLI 309
+RKIP S I
Sbjct: 556 LRKIPGCSWI 565
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 38/270 (14%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ +L W S+++G+ F + I ++ M P+ T+ S+L CA
Sbjct: 83 VFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDG--APDRYTFPSLLKVCA-- 138
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+EG + G +HG ILR + +++ T+L++LYGK G ++ A +VF M ++V +W
Sbjct: 139 -SEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWT 197
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMI +S EA +FD M E+ N ++ A++ + V+ + F M K
Sbjct: 198 AMIVGYSSIGNLVEAKRLFDLMPER----NVASWNAIIGGYMKMGDVKSAEKAFDEMPEK 253
Query: 197 --FEVVPIMEHYGCVVDLLGRAGLLSEAKEF---------------------------MR 227
+++ Y D+L L +A E M
Sbjct: 254 NVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMS 313
Query: 228 SMPFEPDASVLGALLGACKIHGAVDLCHEV 257
S +PD VL +L+ AC G +DL V
Sbjct: 314 SRNVKPDKFVLTSLMLACSQLGNLDLAKWV 343
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 47/305 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G +D A +F+ M +R+VVSWT++I G+ G EA +F ++M N+
Sbjct: 168 LVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLF-DLMPERNV-- 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
A++ +++ G + G + ++ + +V T +ID Y K G + A
Sbjct: 225 ---ASWNAII---GGYMKMGDVKSAEKAFDEMPEKNVV----SFTTMIDGYAKAGDMLSA 274
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ +D+ W+A+IS N + EA+ F EM + ++ ++ +++ AC
Sbjct: 275 RNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLAC--- 331
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG--CVVDLLG------------RAGLLSEAKEFM 226
S LG ++ ++ Y C VDL G + G + A
Sbjct: 332 -----------SQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLF 380
Query: 227 RSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL--ELQPKHCGRYVVLSNI-HAGL- 282
MP + D +++ IHG D + R+L +L P V+L+ AGL
Sbjct: 381 EKMP-KRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLV 439
Query: 283 -ERWN 286
E W+
Sbjct: 440 DEGWH 444
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY + G M A LF M+ + +VSWT++I+G+ GC+ EA+ F+ M + +
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIE 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +SVL SCA L G L LGK +H Y R ++ + ALI++Y K G L +A
Sbjct: 239 PDEISLISVLPSCAHL---GSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I++F+ KDV +W+ MIS A + A F EM+ ++ N ITF+ +L+AC+
Sbjct: 296 IQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHV 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GL+ F M +++ P +EHYGC++D+L RAG L A E ++MP +PD+ + G+
Sbjct: 356 GLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGS 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ G +D+ L+E++P G YV+L+NI+A L +W + LRK + + +
Sbjct: 416 LLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENM 475
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 476 KKTPGCSLIE 485
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 44/298 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D K GDMD A LF + +V + SII + N + + I ++K ++ +
Sbjct: 48 MVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKT-IEF 106
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + SCA L G YLGKQVHG++ + V ALID+Y K L A
Sbjct: 107 PDRFTFPFMFKSCASL---GSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDA 163
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREK------------------------------- 149
+VF M +DV +WN+++S A + K
Sbjct: 164 HKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYV 223
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYG 207
EA+ F EM+ G+ +EI+ ++VL +CA +ELG + ++ G + +
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVC---N 280
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
++++ + G+LS+A + + D ++ HG H +E+Q
Sbjct: 281 ALIEMYSKCGMLSQAIQLFEQTKGK-DVISWSTMISGYAYHGNA---HRAFETFIEMQ 334
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K++H I+ + + S FM T ++DL K+G ++ A R+F + +V +N++I + N
Sbjct: 27 KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 146 SREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
S + + ++ ++ K + + TF + +CA LG ++ H L KF
Sbjct: 87 SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQV-HGHLYKF 138
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y ++G ++ A +F+ M ++VVSW S+I+ ++R G + EA+ +F N M N +V
Sbjct: 194 MISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF-NKMRNSRVV- 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS+L++C+ L G L +GK++H YIL N+ V + +LID+Y K G + A
Sbjct: 252 PDEATLVSILAACSQL---GDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F M K++ +WN +I +LA + EA+ +F+EM+ G +EIT +L+AC+ +
Sbjct: 309 LDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHS 368
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++GL F M + V +EHY C+VDLLGR GLL EA E + MP +PD V GA
Sbjct: 369 GLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGA 428
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ ++ ++LLEL+P G YV++SNI+ +RW +RK M++ GI
Sbjct: 429 LLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGI 488
Query: 301 RKIPAYSLIE 310
+K A S IE
Sbjct: 489 KKGRAISSIE 498
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+V T++I Y + G +E A ++F M K+V +WN+MIS + +EAL +F++M+
Sbjct: 187 NVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMR 246
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLGRA 216
+ +E T V++L AC++ + +G ++ + +L G + V Y ++D+ +
Sbjct: 247 NSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL----YNSLIDMYAKC 302
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
G + A + MP + S ++GA +HG
Sbjct: 303 GPVVTALDIFLEMPGKNLVS-WNVIIGALALHG 334
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 185/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K + A +F NM+ +DV++W ++I G +NG EA+ +F+ + V
Sbjct: 325 MVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFR--LLKRESVW 382
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P T+ ++L++CA L + L LG+Q H ++L++ VF+G +LID+Y K
Sbjct: 383 PTHYTFGNLLNACANLAD---LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKC 439
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G +E RVF+ M+ KD +WNAMI A N +AL +F +M E G + +T + VL
Sbjct: 440 GSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVL 499
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
AC+ A L++ G F SM + ++P+ +HY C+VDLLGRAG L EAK + M +PD
Sbjct: 500 CACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPD 559
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A V G+LL ACK+H + L V ++LLE+ P++ G YV+LSN++A W +RK
Sbjct: 560 AIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKL 619
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S IE
Sbjct: 620 MRQRGVVKQPGCSWIE 635
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 135/246 (54%), Gaps = 5/246 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + K+G +D A+ +FE M + D SW S+I+GF ++G F EA+ F M G+ LV
Sbjct: 91 IICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLV- 149
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ S LS+CAGL + L LG Q+H + R+ + V+MG+AL+D+Y K G +E A
Sbjct: 150 -NEYSFGSALSACAGLQD---LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYA 205
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++ +WN++I+ N EAL +F EM + G+ +E+T +V++ACA
Sbjct: 206 QSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATI 265
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G ++ ++ E + ++D+ + ++EA+ MP S
Sbjct: 266 SAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSM 325
Query: 241 LLGACK 246
+ G K
Sbjct: 326 VSGYAK 331
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 37/226 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +F+ M R VSW S+I + +NG EA+ +F M+ V
Sbjct: 192 LVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG--VE 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLER 119
P+E T SV+S+CA + + G+Q+H +++ +E + +G AL+D+Y K +
Sbjct: 250 PDEVTLASVVSACATI---SAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINE 306
Query: 120 A--------IR-----------------------VFKSMVIKDVCTWNAMISSLASNSRE 148
A IR +F +M++KDV TWNA+I+ N
Sbjct: 307 ARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGEN 366
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
+EAL++F +K + + TF +L ACA ++LG + +L
Sbjct: 367 EEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVL 412
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGC------------------------------ 116
+VH I+++ F+ LID+YGK GC
Sbjct: 40 RVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSG 99
Query: 117 -LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
L+ A+ +F+ M D C+WN+MIS + R EALV F +M G NE +F + L+
Sbjct: 100 FLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS 159
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
ACA Q ++LG ++ HS++ + + + +VD+ + G + A+ M
Sbjct: 160 ACAGLQDLKLGSQI-HSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRV 218
Query: 236 SVLGALLGACKIHGAVD 252
S +L+ + +G VD
Sbjct: 219 S-WNSLITCYEQNGPVD 234
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A ++F N+ R V WT++I+ +V+ G + E + +F N M +++
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLF-NKMRQASVI- 409
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++AT+ S+L + A + L LGKQ+H +I+++ + +VF G+AL+D+Y K G ++ A
Sbjct: 410 ADQATFASLLRASASI---ASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 466
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ F+ M +++ +WNAMIS+ A N + L F EM GL+ + ++F+ VL+AC+ +
Sbjct: 467 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 526
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F+SM +++ P EHY VVD+L R+G +EA++ M MP +PD + +
Sbjct: 527 GLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 586
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L AC+IH +L +L ++ + YV +SNI+A +W + + KAM + G
Sbjct: 587 VLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRG 646
Query: 300 IRKIPAYSLIE 310
++K+PAYS +E
Sbjct: 647 VKKLPAYSWVE 657
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 142/301 (47%), Gaps = 15/301 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ + A LF+ M ++D VS+ II+G+ +G A +F+ +
Sbjct: 251 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL--QFTAFD 308
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + ++LS + ++ +G+Q+H + + +G +L+D+Y K G E A
Sbjct: 309 RKQFPFATMLSIASNTLD---WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 365
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F ++ + W AMIS+ +E L +F++M++ + A++ TF ++L A A
Sbjct: 366 EMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASI 425
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG +L HS + K + + ++D+ + G + +A + + MP + + A
Sbjct: 426 ASLSLGKQL-HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNA 483
Query: 241 LLGACKIHGAVDLCHEVGRRLL--ELQPKHCGRYVVLSN------IHAGLERWNRATDLR 292
++ A +G + + + ++ LQP VLS + GL +N T +
Sbjct: 484 MISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIY 543
Query: 293 K 293
K
Sbjct: 544 K 544
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
MI GYVK+G++ A LF+ M++R V+WT +I G+ + F EA +F M G
Sbjct: 84 MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG---- 139
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T+V++LS C G +E G + QV I++ + +G L+D Y K L+
Sbjct: 140 TEPDYVTFVTLLSGCNG--HEMGNQI-TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 196
Query: 119 RAIRVFKSMVIKDVCTWNAMI 139
A ++FK M D T+ A++
Sbjct: 197 LACQLFKEMPEIDSFTFAAVL 217
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL + GL + LG+Q+H ++++ V +VF+ AL+D Y K + A ++F
Sbjct: 212 TFAAVLCANIGL---DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLF 268
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D ++N +IS A + + K A +F E++ + F +L+ + E
Sbjct: 269 DEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWE 328
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+G ++ + I+ +VD+ + G EA+
Sbjct: 329 MGRQIHAQTIVTTADSEILVG-NSLVDMYAKCGKFEEAE 366
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 107 LIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166
+I Y K G L A ++F MV + TW +I + ++ KEA +F +M+ G +
Sbjct: 84 MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143
Query: 167 EITFVAVLTAC-----------ARAQLVELGLE 188
+TFV +L+ C + Q+++LG +
Sbjct: 144 YVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYD 176
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A ++F N+ R V WT++I+ +V+ G + E + +F N M +++
Sbjct: 392 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLF-NKMRQASVI- 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++AT+ S+L + A + L LGKQ+H +I+++ + +VF G+AL+D+Y K G ++ A
Sbjct: 450 ADQATFASLLRASASI---ASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++ F+ M +++ +WNAMIS+ A N + L F EM GL+ + ++F+ VL+AC+ +
Sbjct: 507 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F+SM +++ P EHY VVD+L R+G +EA++ M MP +PD + +
Sbjct: 567 GLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L AC+IH +L +L ++ + YV +SNI+A +W + + KAM + G
Sbjct: 627 VLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRG 686
Query: 300 IRKIPAYSLIE 310
++K+PAYS +E
Sbjct: 687 VKKLPAYSWVE 697
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 11/263 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
MI GYVK+G++ A LF+ M++R V+WT +I G+ + F EA +F M G
Sbjct: 89 MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG---- 144
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T+V++LS C G +E G + QV I++ + +G L+D Y K L+
Sbjct: 145 TEPDYVTFVTLLSGCNG--HEMGNQI-TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++FK M D ++NAMI+ + + +++A+ +F EM+ GL+ E TF AVL A
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LG ++ HS + K V + ++D + + +A++ MP E D
Sbjct: 262 GLDDIVLGQQI-HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSY 319
Query: 239 GALLGACKIHGAVDLCHEVGRRL 261
++ G ++ R L
Sbjct: 320 NVIISGYAWDGKHKYAFDLFREL 342
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ +D A LF+ M + D VS+ ++I G+ ++G +A+ +F M + ++
Sbjct: 190 LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG--LK 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P E T+ +VL + GL + LG+Q+H ++++ V +VF+ AL+D Y K + A
Sbjct: 248 PTEFTFAAVLCANIGL---DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDA 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +D ++N +IS A + + K A +F E++ + F +L+ +
Sbjct: 305 RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 364
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
E+G ++ + I+ +VD+ + G EA+
Sbjct: 365 LDWEMGRQIHAQTIVTTADSEILVG-NSLVDMYAKCGKFEEAE 406
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 142/301 (47%), Gaps = 15/301 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ + A LF+ M ++D VS+ II+G+ +G A +F+ +
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL--QFTAFD 348
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + ++LS + ++ +G+Q+H + + +G +L+D+Y K G E A
Sbjct: 349 RKQFPFATMLSIASNTLD---WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F ++ + W AMIS+ +E L +F++M++ + A++ TF ++L A A
Sbjct: 406 EMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASI 465
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG +L HS + K + + ++D+ + G + +A + + MP + + A
Sbjct: 466 ASLSLGKQL-HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNA 523
Query: 241 LLGACKIHGAVDLCHEVGRRLL--ELQPKHCGRYVVLSN------IHAGLERWNRATDLR 292
++ A +G + + + ++ LQP VLS + GL +N T +
Sbjct: 524 MISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIY 583
Query: 293 K 293
K
Sbjct: 584 K 584
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 7/309 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV+N +D A+ LF M +RDV SW+++I+G+ +N A+ +F M+ + ++
Sbjct: 402 LIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASG--IK 459
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VSVLS+ A G L G+ H Y+ N I +S + A+ID+Y K G + A
Sbjct: 460 PNEVTMVSVLSAIA---TSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNA 516
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ VF + K V WNA+I LA + +L +F +++ + ++ N ITF+ VLTAC
Sbjct: 517 LEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACC 576
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G F SM + + P ++HYGC+VDLLGRAG L EA+E +RSMP + D +
Sbjct: 577 HVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIW 636
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G LL AC+ HG VD+ L L+P H V+LSN++A +W A +R+AM
Sbjct: 637 GTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSH 696
Query: 299 GIRKIPAYS 307
++++P YS
Sbjct: 697 RMQRLPGYS 705
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 43/333 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYVK+G +D A LF+ M + VS+T++I GF +N C+ +A+ +FK M NV +V
Sbjct: 138 MISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMR-NVGVV- 195
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR---NEIVL-------------SVFMG 104
PNE T +++S+ + GG++ + +HG +++ E VL S+
Sbjct: 196 PNEVTIATLVSAYSHF---GGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEA 252
Query: 105 TALIDL---------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
AL D Y K G ++ A VF+ + KD+ TW +I R
Sbjct: 253 RALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERIN 312
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-FEVVPIMEHYGC 208
EAL+M+ M G N++ V +++ C R + G +L +++ F+ ++
Sbjct: 313 EALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQ--ST 370
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268
++ L G ++EA R E AS AL+ + +D E+ E+ +
Sbjct: 371 IIHLYAACGRINEACLQFRIGSKENVAS-WNALIAGYVRNRMIDRAMEL---FNEMPERD 426
Query: 269 CGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
+ + + + E+ N A +L MV +GI+
Sbjct: 427 VFSWSTMISGYTQNEQPNLALELFHKMVASGIK 459
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 131/285 (45%), Gaps = 38/285 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY K G +DSA ++FE + +D+V+W +II+G+VR EA+ ++++M+
Sbjct: 270 MLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAG--WE 327
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG----- 115
PN+ V ++S C + + G+Q+ +++ F+ + +I LY G
Sbjct: 328 PNDVMMVDLISGCGRTM---AMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEA 384
Query: 116 CLE--------------------------RAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
CL+ RA+ +F M +DV +W+ MIS N +
Sbjct: 385 CLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPN 444
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
AL +F +M G++ NE+T V+VL+A A + ++ G H + + +
Sbjct: 445 LALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG-RWAHEYVHNNSITVSDNLSAAI 503
Query: 210 VDLLGRAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHGAVDL 253
+D+ + G ++ A E F S A++ +HG +L
Sbjct: 504 IDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANL 548
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
E VS L C+ + L GKQ+H + ++ + + F+ +LI++YGK G L A
Sbjct: 66 ELVLVSALKFCS---DHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKS 122
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+F D ++N MIS + + A +FDEM KG +++ ++ ++ +
Sbjct: 123 IFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGC----VSYTTMIMGFSQNEC 178
Query: 183 VELGLELFHSM 193
+ELF M
Sbjct: 179 WNQAVELFKQM 189
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 184/311 (59%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G + SA LF M +RDV+SWT+++ G + G EA+ VF+ M+ V
Sbjct: 149 LLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAV- 207
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T V+VL++C+ L L LG+ VH YI +R ++V+ +G ALI++Y K +
Sbjct: 208 PNEVTLVNVLTACSSL---SALNLGRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYM 264
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF + KD+ +W+ +I +A N AL F M G+ +++TF+ +L+AC+
Sbjct: 265 AVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSH 324
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL F +M + + P M+HY C+VD+ GRAGLL EA+ F+R MP E + + G
Sbjct: 325 AGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWG 384
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL ACKIHG + + + L + G +LSN +A RW+ A +R M + G
Sbjct: 385 ALLNACKIHGNEKMFGXIBQSLRNAKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMG 444
Query: 300 IRKIPAYSLIE 310
++K+ S IE
Sbjct: 445 LKKMSGCSWIE 455
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 102/187 (54%), Gaps = 9/187 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YV + A +F+++ DVVSWTSII+G + G EAI F +M V+
Sbjct: 51 LLHSYVVENNXVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMD-----VK 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T VSV+S+C GL + GK +HGY LR+ ++ + AL+D Y K G L A
Sbjct: 106 PNTSTLVSVVSACCGLR---AVRFGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSA 162
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F M +DV +W M+ LA +EA+ +F M + G NE+T V VLTAC+
Sbjct: 163 KYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSS 222
Query: 180 AQLVELG 186
+ LG
Sbjct: 223 LSALNLG 229
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 77/282 (27%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K DM A+ +F + +D++SW++II G NG A+ F M+ V+ V
Sbjct: 252 LINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLML--VHGVS 309
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ T++ +LS+C AGLV +G ++ + Y + ++ M +D+YG+ G LE
Sbjct: 310 PDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACM----VDMYGRAGLLE 365
Query: 119 RAIRVFKSMVIK-DVCTWNAMIS----------------------------------SLA 143
A + M ++ + W A+++ + A
Sbjct: 366 EAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGXIBQSLRNAKGVSIGTLALLSNTYA 425
Query: 144 SNSREKEALVMFDEMKEKGLR-------------------ANE--------------ITF 170
S++R +A + D M++ GL+ AN TF
Sbjct: 426 SSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMINRYDGANRSFAFAGKSRVLPDIATF 485
Query: 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+ + +A + +LVE G +F ++P ++HY CVVD+
Sbjct: 486 IGLFSASSHKELVEQGF-VFLGATNDDGIMPKIQHYACVVDI 526
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 185/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I + + G M A LF +M + VVSWT++++G+ G F A+ VF+ M +
Sbjct: 189 LISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQM--QMEGFE 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ + V+VL +CA L G L LG+ ++ Y ++ ++ +++ AL+++Y K GC+E A
Sbjct: 247 PDDVSIVAVLPACAQL---GALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+++F M KDV +W+ I LA++ R +EA+ +F+ M +G + N ITFV +L+AC+
Sbjct: 304 LQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSH 363
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A L++ GL F M ++ V P +EHYGCVVDLLGR+G + A + + MP PD + G
Sbjct: 364 AGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWG 423
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ H VD RL+EL+P+ G V+L+N++A RW RK +
Sbjct: 424 SLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRS 483
Query: 300 IRKIPAYSLIE 310
RK P S+IE
Sbjct: 484 TRKTPGCSMIE 494
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 59/288 (20%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA--- 64
+G A +F ++ ++ ++I + +N +A+ V+ M+ L P+ +
Sbjct: 55 HGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRML--RCLPDPSSSGGF 112
Query: 65 ------TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
TY +L +C GL LG+QVH ++ R+ + +LI++Y + G L
Sbjct: 113 SVGDRFTYPFLLKACGGLAAS---QLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLS 169
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK----------------- 161
A +VF M KD +WN +IS+ A + ++A +F M +K
Sbjct: 170 LARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGD 229
Query: 162 --------------GLRANEITFVAVLTACARAQLVELGLELF-----HSMLGKFEVV-P 201
G ++++ VAVL ACA+ +ELG ++ H MLGK +
Sbjct: 230 FAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNA 289
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ME Y + G + EA + M E D +G HG
Sbjct: 290 LMEMY-------AKCGCIEEALQLFHGMS-EKDVISWSTAIGGLAAHG 329
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K D+ A +F+ + R++V+W+++I+G+ R G EA+ +F++M V
Sbjct: 202 LVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAG--VV 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+CA G L GK VH YI + I + + TAL+++Y K GC+ERA
Sbjct: 260 PDEVTMVSVISACAA---SGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M +KD W++MI LA N ++AL F M+E ++ N +TF+ VL+ACA +
Sbjct: 317 KEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 376
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + SML +F +VP ME YGC+VDLL RA L+ +A + +MP P+ +
Sbjct: 377 GLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRT 435
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK +D V +RLLEL+P + Y++LSN++A + +W + + +RK M GI
Sbjct: 436 LLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGI 495
Query: 301 RKIPAYSLIE 310
+ +P S IE
Sbjct: 496 KAVPGCSSIE 505
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 153/304 (50%), Gaps = 14/304 (4%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-EAICVFKNMMGNVNLVRPNEATYV 67
GD+D A LF + + ++ SW S+I G ++ E + +F+ M+ PN T
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRR-GYPNPNTFTMA 165
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C+ + L G+QVH +L++ S F+ TAL++ Y K + A +VF +
Sbjct: 166 FVLKACSIV---SALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEI 222
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+++ W+ MIS A EAL +F +M++ G+ +E+T V+V++ACA + ++ G
Sbjct: 223 TDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG- 281
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ H+ + K + +E +V++ + G + AKE +MP + D +++ I
Sbjct: 282 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAI 340
Query: 248 HGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGLERWNRATDLRKAMVEAGIRKIP 304
+G + E R+ E ++P H VLS H+GL R +M+E GI +P
Sbjct: 341 NGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGR--RYWSSMLEFGI--VP 396
Query: 305 AYSL 308
+ L
Sbjct: 397 SMEL 400
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 191/312 (61%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+D Y K G D+ +A +F+ M ++DVVSW S+I + +NG +A+ +++ M+
Sbjct: 234 MLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGS 292
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ N T ++L +CA + G + GK +H ++R + +V++GT+++D+Y K G +E
Sbjct: 293 IKCNAVTLSAILLACA---HAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVE 349
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A + F+ + K++ +W+AMI+ + +EAL +F+EM G N ITF++VL AC+
Sbjct: 350 MARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACS 409
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G +++M +F + P +EHYGC+VDLLGRAG L EA ++ M +PDA++
Sbjct: 410 HAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIW 469
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+IH V+L +RL EL +CG YV+LSNI+A W +R +
Sbjct: 470 GALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTR 529
Query: 299 GIRKIPAYSLIE 310
GI K P YS +E
Sbjct: 530 GIEKPPGYSSVE 541
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 123/250 (49%), Gaps = 14/250 (5%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + + V T++ +G+VRN ++ +F+ ++ + + +EA + S+ A +
Sbjct: 148 FDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIP 207
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--CLERAIRVFKSMVIKDVCTW 135
+ G + +H +++ + + ++D Y K G L A +VF +M KDV +W
Sbjct: 208 DCG---ITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSW 263
Query: 136 NAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
N+MI+ A N +AL ++ +M ++ N +T A+L ACA A ++ G + H+
Sbjct: 264 NSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG-KCIHNQ 322
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG---- 249
+ + + + VVD+ + G + A++ + + E + A++ +HG
Sbjct: 323 VVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK-EKNILSWSAMITGYGMHGHGQE 381
Query: 250 AVDLCHEVGR 259
A+D+ +E+ R
Sbjct: 382 ALDIFNEMCR 391
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y GD DSA +F+ M RD ++W +I + RN +A+ +F M G N
Sbjct: 166 LVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAE 225
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +L +C L G L G++V Y + + + + +LI +Y K GC+++A
Sbjct: 226 PDDVTCILLLQACTSL---GALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF K V TW+AMIS LASN K+A+ F+EM G+ +E TF VL+AC+ +
Sbjct: 283 YQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHS 342
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF-MRSMPFEPDASVLG 239
LV+ G + F M ++++ P + HYGC+VDL+GRAGLL +A E ++ M PDA++
Sbjct: 343 GLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWR 402
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC+IHG +DL V L+EL+ + G YV+L N +A +E W + ++RK M E G
Sbjct: 403 TLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKG 462
Query: 300 IRKIPAYSLIE 310
I+ P + +E
Sbjct: 463 IQTTPGCTTVE 473
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL C L + +Q+H ++ + T+L+ Y G + A +VF M
Sbjct: 134 VLGHCRALAH------ARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMP 187
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMK--EKGLRANEITFVAVLTACARAQLVELG 186
++D WN +I+ N R K+AL +FD M+ E G +++T + +L AC ++ G
Sbjct: 188 VRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFG 247
Query: 187 LELF 190
+++
Sbjct: 248 EKVW 251
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 177/306 (57%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ SA LF M + VSWT +I+ + G EA+ +F M +P+
Sbjct: 302 YSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGE--KPDLV 359
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T ++++S C G L LGK + Y + N + +V + ALID+Y K G A +F
Sbjct: 360 TVLALISGCG---QTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELF 416
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M + V +W MI++ A N K+AL +F M E G++ N ITF+AVL ACA LVE
Sbjct: 417 YTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVE 476
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
GLE F+ M K+ + P ++HY C+VDLLGR G L EA E ++SMPFEPD+ + ALL A
Sbjct: 477 RGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSA 536
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
CK+HG +++ V +L EL+P+ YV ++NI+A E W +R+ M +RK P
Sbjct: 537 CKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSP 596
Query: 305 AYSLIE 310
S+I+
Sbjct: 597 GQSIIQ 602
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 145/313 (46%), Gaps = 25/313 (7%)
Query: 1 MIDGYVKNGDMDSAILLFE--NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I Y K G++ SA LF+ N R VVSW S+I + +A+ +K M+
Sbjct: 195 LIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGG-- 252
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ +T +++LSSC + L+ G VH + ++ V + LI +Y K G +
Sbjct: 253 FSPDISTILNLLSSC---MQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVH 309
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M K +W MIS+ A EA+ +F+ M+ G + + +T +A+++ C
Sbjct: 310 SARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCG 369
Query: 179 RAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
+ +ELG + + + K VV ++D+ + G ++AKE +M
Sbjct: 370 QTGALELGKWIDNYSINNGLKDNVVVC----NALIDMYAKCGGFNDAKELFYTMANRTVV 425
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN------IHAGLERWNR 287
S ++ AC ++G V E+ +LE ++P H VL + GLE +N
Sbjct: 426 S-WTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNM 484
Query: 288 ATDLRKAMVEAGI 300
T +K + GI
Sbjct: 485 MT--QKYGINPGI 495
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+ +W S V G A+ +F+ M + + PN +T+ VL +CA L + L
Sbjct: 18 LFTWNSNFRHLVNQGHAQNALILFRQM--KQSGITPNNSTFPFVLKACAKLSH---LRNS 72
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ +H ++L++ ++F+ TA +D+Y K G LE A VF M ++D+ +WNAM+ A +
Sbjct: 73 QIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQS 132
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-LVELG 186
+ M+ G+R + +T + ++ + R + L LG
Sbjct: 133 GFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLG 174
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 100/193 (51%), Gaps = 8/193 (4%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G ++ A +F M RD+ SW +++ GF ++G C+ ++M ++ +RP
Sbjct: 95 VDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHM--RLSGIRP 152
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ T + ++ S ++ L V+ + +R + + V + LI Y K G L A
Sbjct: 153 DAVTVLLLIDS---ILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAE 209
Query: 122 RVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F + ++ V +WN+MI++ A+ + +A+ + M + G + T + +L++C +
Sbjct: 210 TLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQ 269
Query: 180 AQLVELGLELFHS 192
+ + GL L HS
Sbjct: 270 PKALFHGL-LVHS 281
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
G C+ R +F TWN+ L + + AL++F +MK+ G+ N TF
Sbjct: 7 GVTPCINRFSTLF---------TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFP 57
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
VL ACA+ + ++ H+ + K + VD+ + G L +A MP
Sbjct: 58 FVLKACAKLSHLR-NSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPV 116
Query: 232 EPDASVLGALLG 243
AS LLG
Sbjct: 117 RDIASWNAMLLG 128
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y G + A +F+ M +RD+V++ ++I G+ + EA+ +F + ++
Sbjct: 588 LVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG--LK 645
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ TY+++L++CA N G L K++H +L++ + +G AL+ Y K G A
Sbjct: 646 PDKVTYINMLNACA---NSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDA 702
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M+ ++V +WNA+I A + R ++ L +F+ MK +G++ + +TFV++L+AC+ A
Sbjct: 703 LLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHA 762
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F SM F + P +EHYGC+VDLLGRAG L E + +++MPF+ + + GA
Sbjct: 763 GLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGA 822
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V + L+L P + YV LS+++A W+ A LRK M + G+
Sbjct: 823 LLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGV 882
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 883 TKEPGRSWIE 892
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 137/249 (55%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G + A LLF M+++D++SWT++I G ++G EA+ VF++M ++
Sbjct: 487 LISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG--LK 544
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY S+L++C+ + L G+++H ++ + + L+++Y G ++ A
Sbjct: 545 PNRVTYTSILNACS---SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDA 601
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ +NAMI A+++ KEAL +FD ++E+GL+ +++T++ +L ACA +
Sbjct: 602 RQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 661
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E E+ HS++ K + +V + G S+A M + + A
Sbjct: 662 GSLEWAKEI-HSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNA 719
Query: 241 LLGACKIHG 249
++G C HG
Sbjct: 720 IIGGCAQHG 728
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 128/248 (51%), Gaps = 7/248 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G +FE ++ RD+++W ++I G G + EA ++ M +
Sbjct: 386 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM-- 443
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TYV +L++C VN L+ G+++H ++++ + + + ALI +Y + G ++ A
Sbjct: 444 PNKITYVILLNAC---VNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDA 500
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F MV KD+ +W AMI LA + EAL +F +M++ GL+ N +T+ ++L AC+
Sbjct: 501 RLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSP 560
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G + H + + + +V++ G + +A++ M + D A
Sbjct: 561 AALDWGRRI-HQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNA 618
Query: 241 LLGACKIH 248
++G H
Sbjct: 619 MIGGYAAH 626
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 6/229 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G + A +F+ M + VVSWT II G+ G A +F+ M V
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG--VV 342
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY++VL++ +G L GK VH +IL + +GTAL+ +Y K G +
Sbjct: 343 PNRITYINVLNAFSG---PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDC 399
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ +V +D+ WN MI LA +EA ++ +M+ +G+ N+IT+V +L AC
Sbjct: 400 RQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP 459
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ G E+ HS + K + + ++ + R G + +A+ M
Sbjct: 460 TALHWGREI-HSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM 507
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 1 MIDGYVKNGDMDSAILLFE--NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN-VN 57
+I+ Y++ G ++ A ++ N +R V SW +++ G+V+ G EA+ + + M + +
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L R AT + +LSSC + L G+++H ++ ++ V + ++++Y K G +
Sbjct: 242 LGR---ATTMRLLSSCK---SPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSI 295
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A VF M K V +W +I A + A +F +M+++G+ N IT++ VL A
Sbjct: 296 HEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R N Y+ +L C + L G++VH +I+++ VL + ALI++Y + G +E
Sbjct: 138 RVNSCDYMKMLKRC---IEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEE 194
Query: 120 AIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A +V+ + + V +WNAM+ +EAL + EM++ GL T + +L++C
Sbjct: 195 ARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSC 254
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+E G E+ H K ++ + C++++ + G + EA+E M
Sbjct: 255 KSPSALECGREI-HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 199/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y ++G ++ A +F+ M ++VVSW S+I+ ++R G + EA+ +F N M N +V
Sbjct: 261 MISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF-NKMRNSRVV- 318
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VS+L++C+ L G L +GK++H YIL N+ V + +LID+Y K G + A
Sbjct: 319 PDEATLVSILAACSQL---GDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 375
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F M K++ +WN +I +LA + EA+ +F+EM+ G +EIT +L+AC+ +
Sbjct: 376 LDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHS 435
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV++GL F M + V +EHY C+VDLLGR GLL EA E + MP +PD V GA
Sbjct: 436 GLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGA 495
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IHG V++ ++ ++LLEL+P G YV++SNI+ +RW +RK M++ GI
Sbjct: 496 LLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGI 555
Query: 301 RKIPAYSLIE 310
+K A S IE
Sbjct: 556 KKGRAISSIE 565
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 48/285 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+I YV G + A LF+++ + +VSW S+I G+ G + EA +F+ M G
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWG---- 184
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL- 117
+ P+ T+V++LS C+ L LG+ VH I + + + + AL+D+Y K G L
Sbjct: 185 MEPDGFTFVNLLSVCS---QSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLH 241
Query: 118 ------------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
E A ++F M K+V +WN+MIS +
Sbjct: 242 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML---GKFEVVPIME 204
+EAL +F++M+ + +E T V++L AC++ + +G ++ + +L G + V
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL--- 358
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
Y ++D+ + G + A + MP + S ++GA +HG
Sbjct: 359 -YNSLIDMYAKCGPVVTALDIFLEMPGKNLVS-WNVIIGALALHG 401
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 137/271 (50%), Gaps = 18/271 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GD+ A +F+ + + + + S+I G+ + +A+ +F+ M+ + + PNE T
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMI--CSGLSPNEFTLPF 93
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +C + + VHG ++ I VF+ ALI +Y G + A ++F +
Sbjct: 94 VLKACGC---KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDIT 150
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
K + +WN+MI A KEA ++F +M+E G+ + TFV +L+ C++++ ++LG
Sbjct: 151 DKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRY 210
Query: 189 L-FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE-FMRSMPFEPDASVLGALLGACK 246
+ F + ++ I+ + +VD+ + G L A+ F R+ E + +++ A
Sbjct: 211 VHFCIEITGVKIDIIVRN--ALVDMYAKCGNLHSAQAIFDRTQ--EKNVVSWTSMISAYA 266
Query: 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277
HG++ EV R++ + P G+ VV N
Sbjct: 267 QHGSI----EVARQIFDQMP---GKNVVSWN 290
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 181/310 (58%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +D A +F+ M RD VSWT+++ + G GE +F +M+ VR
Sbjct: 208 LADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML-RTRGVR 266
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE TY VL +CA E G+QVHG + ++ S F +AL+ +Y K G + A
Sbjct: 267 PNEFTYAGVLRACAEFAVES---FGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M D+ +W A+IS A N + +EAL FD G++ + +TFV VL+ACA A
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHA 383
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GLE+FHS+ ++ + +HY CV+DLL R+G A++ + +M +P+ + +
Sbjct: 384 GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWAS 443
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IH V L L E++P++ YV L+NI+A + ++ D+R+ M GI
Sbjct: 444 LLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503
Query: 301 RKIPAYSLIE 310
K+PA S IE
Sbjct: 504 TKMPASSWIE 513
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 19/196 (9%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM------GNVNLVRPNEA 64
+ SA LF+ M +RD +W+++++G+ R+G A+ +++ M G N + A
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTALIDLYGKVGCLERAI 121
+ + C G+++H +++R I + + +AL D+Y K G ++ A
Sbjct: 171 LAAAAAARCG--------RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDAR 222
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARA 180
RVF M ++D +W AM+ R E +F M + +G+R NE T+ VL ACA
Sbjct: 223 RVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEF 282
Query: 181 QLVELGLELFHSMLGK 196
+ G ++ H + K
Sbjct: 283 AVESFGRQV-HGRMAK 297
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 185/309 (59%), Gaps = 6/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y D+++A FE M +R+VVSW S+I+ + ++G F E++ +F M V
Sbjct: 199 MIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEG--VT 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+VSVLS+C+ L G L GK +H Y+ + V +GTAL ++Y + G +++A
Sbjct: 257 PDGYTFVSVLSACSNL---GDLEFGKYIH-YLSGDLSQSEVMVGTALTEMYAQCGDVDKA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + +DV WN +I +LA + R +EA+ +F M++ GL+ N+ TF + L AC+
Sbjct: 313 FAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHG 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F+SM ++++P + HYGC++D+L R G L EA + MPF+PD ++ GA
Sbjct: 373 GLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGA 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C++ G + L +V + E++ G YV+LSNIHA +W A D RK M E I
Sbjct: 433 LLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKI 492
Query: 301 RKIPAYSLI 309
K S++
Sbjct: 493 SKKTGSSVV 501
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 45/203 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV GD+ SA LF+ M +RD+VSW S+I G+ + G A +F+ M
Sbjct: 137 MIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKM-------- 188
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + +V T++I Y LE A
Sbjct: 189 PEK------------------------------------NVISWTSMIGAYADTDDLETA 212
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F++M ++V +WN+MISS A + + E+L +F +M+ +G+ + TFV+VL+AC+
Sbjct: 213 RSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNL 272
Query: 181 QLVELGLELFHSMLGKFEVVPIM 203
+E G + H + G +M
Sbjct: 273 GDLEFG-KYIHYLSGDLSQSEVM 294
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
++ WNAMI A N +E + MFDEM ++GL+ + T+ V+ +C + G +
Sbjct: 18 EIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVH 77
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
C + G + A +M + AS L CK+ A
Sbjct: 78 -----------------CEIVKSGFESSYAVANSLF-NMYLKMPASFDVGLASNCKLDYA 119
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283
+ ++ R +EL + G+YV + ++ + E
Sbjct: 120 RKIFDDMCVRPVELWNQMIGKYVNIGDVKSARE 152
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY NG++DSA LF+ M ++++ SW ++I+G+ +N EA+ +F M +L
Sbjct: 396 MIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSL-E 454
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL + A L G L LG VH ++ R ++ + +GTALID+Y K G + ++
Sbjct: 455 PDEVTIVSVLPAIADL---GALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 511
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M K+ +WNA+I++ A N R KEAL +F EM KG NEIT + VL+AC +
Sbjct: 512 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHS 571
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F +M +F + P +EHYGC+VDLLGRAG L EA++ M SMP+E + +L +
Sbjct: 572 GLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSS 630
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC V V + ++++ + G Y++L N++A +RW A +++ M G+
Sbjct: 631 FLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGV 690
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 691 KKEAGCSAIE 700
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 18/251 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G MD A LF+ M+ R VSWT++I G+VR+G A +F M +
Sbjct: 303 LVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM------IE 356
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ A + +++ + + LG L +E+ SV T +I Y G L+
Sbjct: 357 KDSAAFNTMIDAY--------VKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 408
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A +F +M K++ +WNAMIS N + EAL +F EM+ L +E+T V+VL A A
Sbjct: 409 ARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 468
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG H + + ++ ++D+ + G + +++ +MP E + +
Sbjct: 469 DLGALDLG-GWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASW 526
Query: 239 GALLGACKIHG 249
AL+ A I+G
Sbjct: 527 NALINAFAING 537
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 113/253 (44%), Gaps = 19/253 (7%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
S+I +V + E+ +++++ N + P+ T+ + SCA + ++ G+++H
Sbjct: 230 NSMIKAYVGMRQYSESFALYRDLRRNTSFT-PDSFTFSVLAKSCALNM---AIWEGQEIH 285
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
+++ L ++ TAL+D+Y K G ++ A ++F M+ + +W A+I +
Sbjct: 286 SHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMD 345
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
A +FD+M EK + F ++ A + + +LF M + V + YG
Sbjct: 346 NAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYS 401
Query: 210 VDLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
+ G L A+ +MP F +A + G + + A+ L HE+ + L+
Sbjct: 402 SN-----GNLDSARSLFDAMPEKNLFSWNAMISGYXQNK-QPYEALKLFHEM-QSTTSLE 454
Query: 266 PKHCGRYVVLSNI 278
P VL I
Sbjct: 455 PDEVTIVSVLPAI 467
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YVK +D A F+ M +RDVV+W+++I G+ +NG E++ +F+ M +
Sbjct: 257 LMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM--KATSCK 314
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA L G LG Q+ ++ + L+ ++G+ALID+Y K G + RA
Sbjct: 315 PNEVTLVGVLSACAQL---GSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRA 371
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K V TWN+M+ LA N ++A+ ++ EM E+ ++ NEITFVA+LTAC A
Sbjct: 372 RSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHA 431
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ F M V P +EH C+VDLL ++G L EA +F+ M EP+A +
Sbjct: 432 GLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWST 491
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L +LL L+P + YV+LSNI+A W ++R M +
Sbjct: 492 LLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNV 551
Query: 301 RKIPAYSLIE 310
+K+ AYS IE
Sbjct: 552 QKLSAYSWIE 561
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K+GD+ A LF+ M++R SW S+I + G + EA+ +F+ M+ R
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG--AR 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++ S CA G L GK I ++ ++ + TAL+++Y K ++ A
Sbjct: 215 PNAITIATMFSICA---KTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F M +DV W+ MI+ A N R E+L +F+ MK + NE+T V VL+ACA+
Sbjct: 271 RREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQL 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSM 229
ELG ++ + + + +P+ + G ++D+ + G + A+ M
Sbjct: 331 GSDELGGQIGSHV--ESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 34/149 (22%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V+ SCA L GKQVH + + ++ +F+ TAL+D Y K G ++ A++VF M
Sbjct: 91 VVKSCAIL---AASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMP 147
Query: 129 IKDV-------------------------------CTWNAMISSLASNSREKEALVMFDE 157
+KD +WN+MI+ A +EAL +F
Sbjct: 148 VKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRR 207
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELG 186
M +G R N IT + + CA+ +E G
Sbjct: 208 MLSEGARPNAITIATMFSICAKTGDLETG 236
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 192/315 (60%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G +K +MDSA LF+ ++DVV+W ++I+G+V G EA+ +FK M
Sbjct: 215 MITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGE--H 272
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGT----ALIDLYGKVG 115
P+ T +S+LS+CA L G L GK++H YIL + S+++GT ALID+Y K G
Sbjct: 273 PDVVTILSLLSACAVL---GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCG 329
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
++RAI VF+ M +D+ TWN +I LA + E ++ MF+EM+ + NE+TF+ V+
Sbjct: 330 SIDRAIEVFRGMKDRDLSTWNTLIVGLALHHAEG-SVEMFEEMQRLKVWPNEVTFIGVIL 388
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC+ + V+ G + F M + + P ++HYGC+VD+LGRAGLL EA F+ SM EP+A
Sbjct: 389 ACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNA 448
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
V LLGACKI+G V+L +LL ++ G YV+LSNI+A +W+ +RK
Sbjct: 449 IVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMF 508
Query: 296 VEAGIRKIPAYSLIE 310
+ ++K SLIE
Sbjct: 509 DDTRVKKPTGISLIE 523
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 26/287 (9%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A LFE + K DV ++ G ++ + + ++ M V P+ T+
Sbjct: 60 GALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEM--EKRGVSPDRYTFTF 117
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +C+ L G +HG ++R+ +L+ ++ ALI + G L A +F
Sbjct: 118 VLKACSKLEWRSN---GFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSA 174
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
W++M S A + EA+ +FDEM +K +++ + ++T C + + ++ E
Sbjct: 175 KAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDK----DQVAWNVMITGCLKCREMDSARE 230
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
LF K +VV V+ LS KE MR PD + +LL AC +
Sbjct: 231 LFDRFTEK-DVVTWNAMISGYVNCGYPKEALSIFKE-MRDAGEHPDVVTILSLLSACAVL 288
Query: 249 GAVDLCHEVGRRL----LELQPKHCGRYVVLSNIHAGLERWNRATDL 291
G + E G+RL LE V S+I+ G WN D+
Sbjct: 289 GDL----ETGKRLHIYILETAS-------VSSSIYVGTPIWNALIDM 324
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +++ A LF+ M +RD+V+WT +I G+ G E++ +F M V
Sbjct: 273 LVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKM--REEGVV 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+ +CA L G ++ + + YI R + L V +GTA+ID++ K GC+E A
Sbjct: 331 PDKVAMVTVVFACAKL---GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESA 387
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+V +W+AMI++ + + ++AL +F M G+ N+IT V++L AC+ A
Sbjct: 388 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 447
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M + V ++HY CVVDLLGRAG L EA + + SM E D + GA
Sbjct: 448 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 507
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LGAC+ H V L + LLELQP++ G Y++LSNI+A RW R M + +
Sbjct: 508 FLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRL 567
Query: 301 RKIPAYSLIE 310
+KIP ++ IE
Sbjct: 568 KKIPGWTWIE 577
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 141/245 (57%), Gaps = 11/245 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK +++ A LF+ M +RD+V+WT +I G+ G E++ +F+ M V
Sbjct: 71 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM--REEGVV 128
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ V+V+ +CA L G ++ + + YI R + L V +GTA+ID+Y K GC+E A
Sbjct: 129 PDKVAMVTVVFACAKL---GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA 185
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+V +W+AMI++ + + ++AL +F M G+ ++IT ++L AC+
Sbjct: 186 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDL 245
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +++G L H ++ KF + ++H+ C +VD+ G+ + +A+ MP E D
Sbjct: 246 KNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTW 301
Query: 239 GALLG 243
++G
Sbjct: 302 TVMIG 306
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 143/267 (53%), Gaps = 16/267 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MID Y K G ++SA +F+ M +++V+SW+++I + +G +A+ +F+ M+ + L
Sbjct: 172 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML-- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T S+L +C+ L N L +G+ +H + + + L F+ AL+D+YGK +E A
Sbjct: 230 PDKITLASLLYACSDLKN---LQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D+ TW MI A E+LV+FD+M+E+G+ +++ V V+ ACA+
Sbjct: 287 RFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 346
Query: 181 QLVELGLEL-FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ + + KF++ I+ ++D+ + G + A+E M E +
Sbjct: 347 GAMHKARTIDDYIQRKKFQLDVILG--TAMIDMHAKCGCVESAREIFDRME-EKNVISWS 403
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQP 266
A++ A HG GR+ L+L P
Sbjct: 404 AMIAAYGYHGQ-------GRKALDLFP 423
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 117/239 (48%), Gaps = 26/239 (10%)
Query: 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGY 91
++ GF + G + F+ ++ RP+ T V+ +C L N L +G+ +H
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCG--ARPDNYTLPFVIRACRDLKN---LQMGRLIHHI 55
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+ + + L F+ AL+D+Y K +E A +F M +D+ TW MI A + E+
Sbjct: 56 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 115
Query: 152 LVMFDEMKEKGLRANEITFVAVLTACA------RAQLVELGLELFHSMLGKFEVVPIMEH 205
LV+F++M+E+G+ +++ V V+ ACA +A++++ ++ KF++ I+
Sbjct: 116 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ-----RKKFQLDVILG- 169
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++D+ + G + A+E M E + A++ A HG GR+ L+L
Sbjct: 170 -TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDL 219
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K D+ A +F+ + R++V+W+++I+G+ R G EA+ +F++M V
Sbjct: 133 LVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAG--VV 190
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+CA G L GK VH YI + I + + TAL+++Y K GC+ERA
Sbjct: 191 PDEVTMVSVISACAA---SGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERA 247
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M +KD W++MI LA N ++AL F M+E ++ N +TF+ VL+ACA +
Sbjct: 248 KEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + SML +F +VP ME YGC+VDLL RA L+ +A + +MP P+ +
Sbjct: 308 GLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRT 366
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL CK +D V +RLLEL+P + Y++LSN++A + +W + + +RK M GI
Sbjct: 367 LLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGI 426
Query: 301 RKIPAYSLIE 310
+ +P S IE
Sbjct: 427 KAVPGCSSIE 436
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 153/304 (50%), Gaps = 14/304 (4%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-EAICVFKNMMGNVNLVRPNEATYV 67
GD+D A LF + + ++ SW S+I G ++ E + +F+ M+ PN T
Sbjct: 38 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRR-GYPNPNTFTMA 96
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL +C+ + L G+QVH +L++ S F+ TAL++ Y K + A +VF +
Sbjct: 97 FVLKACSIV---SALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEI 153
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+++ W+ MIS A EAL +F +M++ G+ +E+T V+V++ACA + ++ G
Sbjct: 154 TDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG- 212
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ H+ + K + +E +V++ + G + AKE +MP + D +++ I
Sbjct: 213 KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLAI 271
Query: 248 HGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGLERWNRATDLRKAMVEAGIRKIP 304
+G + E R+ E ++P H VLS H+GL R +M+E GI +P
Sbjct: 272 NGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRR--YWSSMLEFGI--VP 327
Query: 305 AYSL 308
+ L
Sbjct: 328 SMEL 331
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 189/311 (60%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +V+ G+++ A +F++M ++DVVSWT++++G+ + C EA+ +F M +R
Sbjct: 194 LVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAG--IR 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV+S+C L G + G VH YI N V + ALI++Y K GC++RA
Sbjct: 252 PDEVTIVSVISACTNL---GDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +M K + TWN+MIS+ A++ ++A +F M G+ + ITF+A+L A
Sbjct: 309 WRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHK 368
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G LF M + + +EHYGC+VD+LGRAG L EA E + +MP + V GA
Sbjct: 369 GLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGA 428
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+I+G V++ V ++LLEL+P G Y++L +I+ R A +R+AM E+G
Sbjct: 429 LLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGA 488
Query: 301 RKIPAYSLIEA 311
K P YS + A
Sbjct: 489 MKNPGYSWVGA 499
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 38/285 (13%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+GD+ A LF+ M + + + +II G+ ++ + +F M N V P+E T+
Sbjct: 62 PSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQM--RQNHVDPDEFTF 119
Query: 67 ---VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG----------- 112
+ S + N ++HG + + +F+ ALI+LY
Sbjct: 120 NFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRV 179
Query: 113 --------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+ G LE A +VF M KDV +W AM+S + + +EAL
Sbjct: 180 FNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREAL 239
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F EM + G+R +E+T V+V++AC VE G+ + HS + + ++ ++++
Sbjct: 240 ELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNV-HSYINENGFGWMVSLCNALINM 298
Query: 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
+ G + A +M +++ AC HG + E+
Sbjct: 299 YAKCGCVDRAWRVFNNMK-RKSLITWNSMISACANHGYAEDAFEL 342
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 185/318 (58%), Gaps = 13/318 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--------VVSWTSIINGFVRNGCFGEAICVFKNM 52
+I Y G D A +F + K D VVSW+++I GF G EA+ +F+ M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+ V+ N T SVLS CA L L+LG+++HG+++R+ + ++ +G LI++Y
Sbjct: 403 --QLAKVKANSVTIASVLSVCAEL---AALHLGREIHGHVVRSLMDGNILVGNGLINMYT 457
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K G + VF+ + KD+ +WN M++ + + A+ FD+M + G + +TFVA
Sbjct: 458 KSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVA 517
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
VL+AC+ A LV G ELF M+ +F V P MEHY C+VDLLGRAGLL EA + ++SMP E
Sbjct: 518 VLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE 577
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292
P+A V GALL +C++H ++ E ++ L + G Y++LSNI+A RW + +R
Sbjct: 578 PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 637
Query: 293 KAMVEAGIRKIPAYSLIE 310
+ G++K P S I+
Sbjct: 638 ISAKTKGLKKTPGQSWIQ 655
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 40/226 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNE 63
Y K G MD A +FE M R VSW ++++G+ N C G A +F+ MMG+ L PN
Sbjct: 180 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG-ASEMFR-MMGSAGL-EPNL 236
Query: 64 ATYVSVLSS---CAGLVNEGGLY-----------------------------LGKQVHGY 91
T+ S+LSS C V L+ GK +HGY
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+++ +F+ +LI LYGK G + A +F + K++ +WNA+ISS A EA
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 356
Query: 152 LVMFDEMKEKG----LRANEITFVAVLTACARAQLVELGLELFHSM 193
+F ++++ +R N +++ AV+ A E LELF M
Sbjct: 357 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPNEATYVSVL 70
S I F N+L W SI+ V +G EA+ ++ M +G V + T+ V+
Sbjct: 92 SPIECFSNLLL-----WNSILRANVAHGYCEEALEIYCRMRKLG----VSADGFTFPLVI 142
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA + G L + VHG+++ ++ +G L+ +YGK+G ++ A +VF+ M ++
Sbjct: 143 RACALM---GSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR 199
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-AQLVELGLEL 189
+WN M+S A N A MF M GL N +T+ ++L++ AR Q VE +EL
Sbjct: 200 SCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET-MEL 258
Query: 190 FHSM 193
F M
Sbjct: 259 FGRM 262
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMI 139
+L +Q+H I+ S F+ ++ +Y G + A RVF+ I+ ++ WN+++
Sbjct: 48 HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSIL 107
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ ++ +EAL ++ M++ G+ A+ TF V+ ACA
Sbjct: 108 RANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACA 146
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY++NG++D+A F M ++++VSW +II+ V+ + EAI VF M V
Sbjct: 408 IVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQ-ECVN 466
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +S+ S+C L G L L K ++ YI +N I L V +GT L+D++ + G E A
Sbjct: 467 VDGVTMMSIASACGHL---GALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESA 523
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F S+ +DV W A I ++A + A+ +F+EM E+GL+ + + F+ LTAC
Sbjct: 524 MSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHG 583
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+F+SM V P HYGC+VDLLGRAGLL EA + ++ MP EP+ + +
Sbjct: 584 GLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNS 643
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G V++ ++ L P+ G YV+LSN++A RWN +R +M E G+
Sbjct: 644 LLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 703
Query: 301 RKIPAYSLIE 310
RK P S+I+
Sbjct: 704 RKPPGTSVIQ 713
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G++D A +F+ M +R+VVSWTS+I G+ R +A+ +F M+ + +++ PN
Sbjct: 178 YAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVI-PNSV 236
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V V+S+CA L + L G++V+ +I + I ++ M +AL+D+Y K ++ A R+F
Sbjct: 237 TMVCVISACAKLED---LETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLF 293
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ NAM S+ KEAL + + M + G+R + I+ ++ +++C++
Sbjct: 294 DEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQ 348
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K +D A LF+ ++ ++ + +VR G EA+ V MM + +R
Sbjct: 276 LVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSG--IR 333
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S +SSC+ L N + GK HGY+LRN + ALID+Y K + A
Sbjct: 334 PDRISMLSAISSCSQLRN---ILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 390
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K V TWN++++ N A F+ M EK N +++ +++A +
Sbjct: 391 FRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEK----NIVSWNTIISALVQE 446
Query: 181 QLVELGLELFHSMLGK 196
+ E +E+FH M +
Sbjct: 447 NMYEEAIEVFHYMQSQ 462
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G+ +G EAI +F MM + + P++ T+ LS CA ++G G Q+
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSG--ISPDKYTFPFGLSVCAKSRDKGN---GIQI 155
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG I++ + +F+ +L+ Y + G L+ A +VF M ++V +W +MI A
Sbjct: 156 HGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFA 215
Query: 149 KEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELF 190
K+A+ +F M +++ + N +T V V++ACA+ + +E G +++
Sbjct: 216 KDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVY 258
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 183/311 (58%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK G + SA LF M +RDV+SWT+++ G + G EA+ VF+ M+ V
Sbjct: 215 LLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAV- 273
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T V+VL++C+ L L LG+ VH YI R ++V+ +G ALI++Y K +
Sbjct: 274 PNEVTLVNVLTACSSL---SALNLGRWVHSYISTRYDLVVDGNVGNALINMYAKCSDMYM 330
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+RVF + KD+ +W+ +I +A N AL F M G+ +++TF+ +L+AC+
Sbjct: 331 AVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSH 390
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE GL F +M + + P M+HY C+VD+ GRAGLL EA+ F+R MP E + + G
Sbjct: 391 AGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWG 450
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL ACKIHG + + + L + G +LSN +A RW+ A +R M + G
Sbjct: 451 ALLNACKIHGNEKMFGRIDQSLRNAKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMG 510
Query: 300 IRKIPAYSLIE 310
++K+ S IE
Sbjct: 511 LKKMSGCSWIE 521
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YV + A +F+++ DVVSWTSII+G + G EAI F +M V+
Sbjct: 117 LLHSYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMD-----VK 171
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +T VSV+S+C GL + GK +HGY LR+ ++ + AL+D Y K G L A
Sbjct: 172 PNTSTLVSVVSACCGL---RAVRFGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSA 228
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F M +DV +W M+ LA +EA+ +F M + G NE+T V VLTAC+
Sbjct: 229 KYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSS 288
Query: 180 AQLVELGLELFHSMLGKFEVV 200
+ LG + + ++++V
Sbjct: 289 LSALNLGRWVHSYISTRYDLV 309
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 181/311 (58%), Gaps = 8/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G+ A+ +F M+ D+V W SII GF +N E + ++K M + V
Sbjct: 155 LIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM-KRADFV- 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T SVL +C GL L LG+QVH ++L+ + + + AL+D+Y K G LE A
Sbjct: 213 ADQSTLTSVLRACTGL---ALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDA 267
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F M+ KDV +W+ MI+ LA N +AL +F+ MK KG + N IT + VL AC+
Sbjct: 268 NLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSH 327
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G F SM F + P EHYGC++DLLGRAG L EA + + M EPDA
Sbjct: 328 AGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWR 387
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H VDL + +L+L P G Y++LSNI+A ++W ++R+ M G
Sbjct: 388 ILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRG 447
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 448 VKKDPGCSWIE 458
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 11/234 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK G +D A LF+ M R+VVSWT++I+ + + +A+ M+ VR
Sbjct: 57 LINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREG--VR 114
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY SVL +C GL+N +Q+HG IL+ + VF+ +ALID Y K+G A
Sbjct: 115 PNMYTYSSVLRACDGLLNL------RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDA 168
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF M+ D+ WN++I A NS E L ++ MK A++ T +VL AC
Sbjct: 169 LNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGL 228
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
L+ELG ++ H + K++ I+ + ++D+ + G L +A M E D
Sbjct: 229 ALLELGRQV-HVHVLKYDQDLILNN--ALLDMYCKCGSLEDANLLFTRMMTEKD 279
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N + + TY ++ C + G + + VH ++ N F+ LI++Y K G
Sbjct: 10 NRLSADAITYSELIKCC---LVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L+ A +F M ++V +W MIS+ ++++ +AL M +G+R N T+ +VL A
Sbjct: 67 LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126
Query: 177 C 177
C
Sbjct: 127 C 127
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GD+D+A LF+ M +RD V+W+++I G++ G EA+ +F M+ V
Sbjct: 1391 MVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTV- 1449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
EAT VSVL++CA + G L GK VH Y+ + +S+ +GTAL+D+Y K G + A
Sbjct: 1450 -GEATLVSVLTACAQI---GTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTA 1505
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+SM ++V TW + +S LA N E L +F M+ G++ N ++FVAVL C+ A
Sbjct: 1506 MEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMA 1565
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM K+ V P EHYGC+VDL GRAG L +A F+ MP EP V GA
Sbjct: 1566 GLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGA 1624
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH +VDL +LL ++ ++ +V LSNI+A + W + +R M G+
Sbjct: 1625 LLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV 1684
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 1685 KKVPGWSTIE 1694
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TA++ G ++ A +F M +D W+AMI+ R +EAL++FDEM G
Sbjct: 1389 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 1448
Query: 165 ANEITFVAVLTACARAQLVELG 186
E T V+VLTACA+ ++ G
Sbjct: 1449 VGEATLVSVLTACAQIGTLDRG 1470
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 5/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
M+ G ++NG +D A+ LF M R++++W SII G + G E++ +F M + + ++V
Sbjct: 198 MVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMV 257
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P++ T SVLS+CA L G + GK VHGY+ RN I V +GTAL+++YGK G +++
Sbjct: 258 KPDKITIASVLSACAQL---GAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQK 314
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F+ M KD W MIS A + +A F EM++ G++ N +TFV +L+ACA
Sbjct: 315 AFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAH 374
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LVE G F M + + P + HY C+VD+L RA L E++ +RSMP +PD V G
Sbjct: 375 SGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWG 434
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG C++HG V+L +V L++L+P + YV +I+A ++ A +R M E
Sbjct: 435 ALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKR 494
Query: 300 I-RKIPAYSLIE 310
I +KIP S+IE
Sbjct: 495 IEKKIPGCSMIE 506
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 123/280 (43%), Gaps = 46/280 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNE 63
G A +F + D+ ++ +I ++ + F +A+ ++K M + PN
Sbjct: 69 GSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMF--CKDIVPNC 126
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T+ +L C ++ G+ +H +++ + V++ +LI LY G L A +V
Sbjct: 127 LTFPFLLKGCTQWLDGA---TGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKV 183
Query: 124 FKSMVIKDVCTWNAM-------------------------------ISSLASNSREKEAL 152
F M++ DV TWN+M I+ LA KE+L
Sbjct: 184 FDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESL 243
Query: 153 VMFDEMK---EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+F EM+ + ++ ++IT +VL+ACA+ ++ G + H L + + + +
Sbjct: 244 ELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHG-KWVHGYLRRNGIECDVVIGTAL 302
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
V++ G+ G + +A E MP E DAS ++ +HG
Sbjct: 303 VNMYGKCGDVQKAFEIFEEMP-EKDASAWTVMISVFALHG 341
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++NG + A+ +F+ + ++ +SWT++I GFV+ EA+ F+ M ++ V
Sbjct: 167 MIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREM--QLSGVA 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++V+++CA L G L LG VH ++ + +V + +LID+Y + GC++ A
Sbjct: 225 PDYVTVIAVIAACANL---GTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLA 281
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M + + +WN++I A N EAL F+ M+E+G + + +++ L AC+ A
Sbjct: 282 RQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHA 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ GL +F M ++P +EHYGC+VDL RAG L EA +++MP +P+ +LG+
Sbjct: 342 GLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGS 401
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ G + L V L+EL YV+LSNI+A + +W+ A +R+ M E GI
Sbjct: 402 LLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGI 461
Query: 301 RKIPAYSLIE 310
+K P +S IE
Sbjct: 462 QKKPGFSSIE 471
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 35/237 (14%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+VSWT+ I + ++G +A F M + PN T++++LS+CA + + G
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAA--IEPNHITFITLLSACAHYPSRSSISFG 113
Query: 86 KQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+H ++ + + ++ V +GTALID+Y K G +E A F M ++++ +WN MI
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMR 173
Query: 145 NSREKEALVMFD-------------------------------EMKEKGLRANEITFVAV 173
N + ++AL +FD EM+ G+ + +T +AV
Sbjct: 174 NGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAV 233
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ACA + LGL + H ++ + ++ ++D+ R G + A++ MP
Sbjct: 234 IAACANLGTLGLGLWV-HRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMP 289
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++ K GD+D A +F+ M +RD V+W ++I G+ + G EA+ VF M + V+
Sbjct: 184 MLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLM--QMEGVK 241
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE + V VLS+C L L G+ VH Y+ R ++ ++V +GTAL+D+Y K G ++RA
Sbjct: 242 LNEVSMVLVLSACTHL---QVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRA 298
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF M ++V TW++ I LA N +E+L +F++MK +G++ N ITF++VL C+
Sbjct: 299 MQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVV 358
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G + F SM + + P +EHYG +VD+ GRAG L EA F+ SMP P A
Sbjct: 359 GLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSA 418
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+++ +L R+++EL+ K+ G YV+LSNI+A + W + LR+ M G+
Sbjct: 419 LLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGV 478
Query: 301 RKIPAYSLIE 310
+K+P S+IE
Sbjct: 479 KKLPGCSVIE 488
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 131/286 (45%), Gaps = 41/286 (14%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLVRPNEATYVS 68
++D A L + + + S+I + ++ ++ + N++ N N + P+ T+
Sbjct: 58 NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL----------- 117
++ +CA L G VHG ++++ L + T L+ +Y ++GCL
Sbjct: 118 LVRTCAQL---QAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAV 174
Query: 118 --------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
+ A ++F M +D TWNAMI+ A R +EAL +F
Sbjct: 175 EPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHL 234
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ +G++ NE++ V VL+AC Q+++ G H+ + +++V + +VD+ + G
Sbjct: 235 MQMEGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCG 293
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGR 259
+ A + M E + + +G ++G ++DL +++ R
Sbjct: 294 NVDRAMQVFWGMK-ERNVYTWSSAIGGLAMNGFGEESLDLFNDMKR 338
>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 529
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 182/312 (58%), Gaps = 4/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENML-KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY K GD+ +A LFE M K D+ +W ++I + +NGC EAI VF M+ V
Sbjct: 220 MISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCV 279
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNE T+ SV S+C+ L G L G V +++ I L + TAL+DLY K G ++R
Sbjct: 280 LPNEKTFSSVTSACSQL---GNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDR 336
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +FK + +DV +++AMI N + EA+ +F+EM + + N ++FV +L+A
Sbjct: 337 AFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAYNH 396
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LVE F SM K+++ P MEHY +VDLLGR+G L EA + + MP +P ASV G
Sbjct: 397 AGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWG 456
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL +C++H V+L + + E P G Y++L NI+A +W++ LRK M E
Sbjct: 457 ALLLSCRLHNNVELGEVIASKCFEQAPGESGYYILLGNIYASANKWDKVRRLRKTMKERC 516
Query: 300 IRKIPAYSLIEA 311
+ K+P S + A
Sbjct: 517 LSKMPGSSWVLA 528
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 24/258 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ +++GD+ +A LF+ M RDVVSW S++ G + G AI +F M
Sbjct: 127 LLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPER----- 181
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N A++ +V+ GL+ G L ++ + V S +I Y K G ++ A
Sbjct: 182 -NAASWNAVI---CGLIAHGHLTRARE----MFEQMPVRSNISWITMISGYAKAGDVQAA 233
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTAC 177
+F+ M K D+ WNAMI+ A N +EA+ +F+ M + + NE TF +V +AC
Sbjct: 234 AGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSAC 293
Query: 178 ARAQLVELGL--ELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
++ + GL + F LG + + +H +VDL ++G + A + + + + D
Sbjct: 294 SQLGNLRFGLWVQSFMVSLG----IELDDHLRTALVDLYTKSGQIDRAFDLFKGLS-KRD 348
Query: 235 ASVLGALLGACKIHGAVD 252
A++ C ++G ++
Sbjct: 349 VVSYSAMIVGCGMNGKLN 366
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 185/318 (58%), Gaps = 13/318 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD--------VVSWTSIINGFVRNGCFGEAICVFKNM 52
+I Y G D A +F + K D VVSW+++I GF G EA+ +F+ M
Sbjct: 343 LISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
+ V+ N T SVLS CA L L+LG+++HG+++R+ + ++ +G LI++Y
Sbjct: 403 --QLAKVKANSVTIASVLSVCAEL---AALHLGREIHGHVVRSLMDGNILVGNGLINMYT 457
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA 172
K G + VF+ + KD+ +WN M++ + + A+ FD+M + G + +TFVA
Sbjct: 458 KSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVA 517
Query: 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
VL+AC+ A LV G ELF M+ +F V P MEHY C+VDLLGRAGLL EA + ++SMP E
Sbjct: 518 VLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE 577
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292
P+A V GALL +C++H ++ E ++ L + G Y++LSNI+A RW + +R
Sbjct: 578 PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVR 637
Query: 293 KAMVEAGIRKIPAYSLIE 310
+ G++K P S I+
Sbjct: 638 ISAKTKGLKKTPGQSWIQ 655
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 40/226 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNE 63
Y K G MD A +FE M R VSW ++++G+ N C G A +F+ MMG+ L PN
Sbjct: 180 YGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG-ASEMFR-MMGSAGL-EPNL 236
Query: 64 ATYVSVLSS---CAGLVNEGGLY-----------------------------LGKQVHGY 91
T+ S+LSS C V L+ GK +HGY
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 296
Query: 92 ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+++ +F+ +LI LYGK G + A +F + K++ +WNA+ISS A EA
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 356
Query: 152 LVMFDEMKEKG----LRANEITFVAVLTACARAQLVELGLELFHSM 193
+F ++++ +R N +++ AV+ A E LELF M
Sbjct: 357 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPNEATYVSVL 70
S I F N+L W SI+ V +G EA+ ++ M +G V + T+ V+
Sbjct: 92 SPIECFSNLLL-----WNSILRANVAHGYCEEALEIYCRMRKLG----VSADGFTFPLVI 142
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA + G L + VHG+++ ++ +G L+ +YGK+G ++ A +VF+ M ++
Sbjct: 143 RACALM---GSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR 199
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR-AQLVELGLEL 189
+WN M+S A N A MF M GL N +T+ ++L++ AR Q VE +EL
Sbjct: 200 SCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET-MEL 258
Query: 190 FHSM 193
F M
Sbjct: 259 FGRM 262
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMI 139
+L +Q+H I+ S F+ ++ +Y G + A RVF+ I+ ++ WN+++
Sbjct: 48 HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSIL 107
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ ++ +EAL ++ M++ G+ A+ TF V+ ACA
Sbjct: 108 RANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACA 146
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +D A +F+ M RDVVSWT+++ + GE +F M+ + ++
Sbjct: 203 LADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSG--IQ 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE TY VL +CA +E LGKQVHG + ++ S F +AL+ +Y K G + A
Sbjct: 261 PNEFTYAGVLRACAEFTSEK---LGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF+ M D+ +W AMIS A N + EAL FD + G R + +TFV VL+ACA A
Sbjct: 318 VRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHA 377
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL +FHS+ ++ + +HY CV+DLL R+GL A+E + +M +P+ + +
Sbjct: 378 GLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWAS 437
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG C+IH V L L E++P++ YV L+NI+A + ++ + R+ M GI
Sbjct: 438 LLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGI 497
Query: 301 RKIPAYSLIE 310
K+PA S IE
Sbjct: 498 TKMPASSWIE 507
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 9/221 (4%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA---TYVSV 69
SA LF+ M +RD SW++I++ R+G A+ +++ M L P A +
Sbjct: 111 SARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRM-----LREPGSAGVDNEFTA 165
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
S+ A G+++H +++R I + +AL D+Y K G ++ A VF M +
Sbjct: 166 SSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPV 225
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV +W AM+ R+ E +F M G++ NE T+ VL ACA +LG ++
Sbjct: 226 RDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQV 285
Query: 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
H + K +V + + G + A R MP
Sbjct: 286 -HGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMP 325
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 190/305 (62%), Gaps = 7/305 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G + A +FE M +DVV+WTS+I+ +V+N C +A+ +F+ M+ ++ L R
Sbjct: 212 MIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREML-SLGL-R 269
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCLER 119
P+ VSVLS+ A L G + GK +H Y+ N+I LS F+G+ALID+Y K G +E
Sbjct: 270 PDGPAIVSVLSAIADL---GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIEN 326
Query: 120 AIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF+S+ + ++ WN+MIS LA + +EAL +F EM+ + NEITF+ +L+ C+
Sbjct: 327 AYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCS 386
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G F SM K+++VP ++HYGC++DL GRAG L +A +++MPFE D
Sbjct: 387 HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAW 446
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
A+L A HG +++ R +EL P YV+LSNI+A RW+ +R M +
Sbjct: 447 KAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQR 506
Query: 299 GIRKI 303
G++KI
Sbjct: 507 GVKKI 511
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 53/288 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y+ G+++ A +F+ M RDVVSW S+I G+++ G A +F M
Sbjct: 150 MVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEM-------- 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P L SC A+ID YGK G E A
Sbjct: 202 PERD-----LVSC-------------------------------NAMIDGYGKCGRCELA 225
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF++M KDV TW +MIS+ N +AL +F EM GLR + V+VL+A A
Sbjct: 226 EKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADL 285
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
VE G + H+ + ++ G ++D+ + G + A RS+ +
Sbjct: 286 GFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWN 344
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
+++ IHG A+D+ E+ R ++++P +LS H GL
Sbjct: 345 SMISGLAIHGLAREALDIFVEMER--MDIEPNEITFLGLLSTCSHGGL 390
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G +D A +F + + + ++I GF E++ ++ M+ +N E +
Sbjct: 54 SGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIP 113
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
SVL +C L+ G+QVHG +L+ + F+G +++ +Y G +E A RVF M
Sbjct: 114 SVLKACGKLL---AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRM 170
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +WN+MI+ + A +FDEM E+ L ++ A++ + EL
Sbjct: 171 PNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDL----VSCNAMIDGYGKCGRCELAE 226
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
++F +M K +VV V L +E M S+ PD + ++L A
Sbjct: 227 KVFETMSDK-DVVTWTSMISAYVQNRCPMKALDLFRE-MLSLGLRPDGPAIVSVLSAIAD 284
Query: 248 HGAVD 252
G V+
Sbjct: 285 LGFVE 289
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + DM++A +F+ M + +VS+ +II G+ R+ EA+ +F+ + + +
Sbjct: 171 LINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASN--IE 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T +SV+ SCA L G L LGK +H Y+ + V + TALID++ K G L A
Sbjct: 229 PTDVTMLSVIMSCALL---GALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDA 285
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I +F+ M ++D W+AMI + A++ +A+ MF+EMK +G+R +EITF+ +L AC+ A
Sbjct: 286 ISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHA 345
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F+SM + + P ++HYGC+VDLLGRAG L EA F+ + + +
Sbjct: 346 GLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRT 405
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG V++ V R+ EL H G YV+LSN++A + RW LRK M + G+
Sbjct: 406 LLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGV 465
Query: 301 RKIPAYSLIE 310
K+P S +E
Sbjct: 466 VKVPGCSSVE 475
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 125/253 (49%), Gaps = 11/253 (4%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
MD A LF+ +L +D++ + + G+ R+ A +F ++ + L P++ T+ S+L
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLL--PDDYTFSSLL 137
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA + L G +H + ++ + ++++ LI++Y + + A VF M
Sbjct: 138 KACA---SSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQP 194
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
+ ++NA+I+ A +S+ EAL +F E++ + ++T ++V+ +CA ++LG +
Sbjct: 195 CIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG-KWI 253
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG- 249
H + K ++ ++D+ + G L++A M D A++ A HG
Sbjct: 254 HEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFATHGD 312
Query: 250 ---AVDLCHEVGR 259
A+ + E+ R
Sbjct: 313 GLKAISMFEEMKR 325
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YVK +D A F+ M +RDVV+W+++I G+ +NG E++ +F+ M +
Sbjct: 257 LMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM--KATSCK 314
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA L G LG Q+ ++ + L+ ++G+ALID+Y K G + RA
Sbjct: 315 PNEVTLVGVLSACAQL---GSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRA 371
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K V TWN+M+ LA N ++A+ ++ EM E+ ++ NEITFVA+LTAC A
Sbjct: 372 RSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHA 431
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ F M V P +EH C+VDLL ++G L EA +F+ M EP+A +
Sbjct: 432 GLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWST 491
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L +LL L+P + YV+LSNI+A W ++R M +
Sbjct: 492 LLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNV 551
Query: 301 RKIPAYSLIE 310
+K+ AYS IE
Sbjct: 552 QKLSAYSWIE 561
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K+GD+ A LF+ M++R SW S+I + G + EA+ +F+ M+ R
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEG--AR 214
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++ S CA G L GK I ++ ++ + TAL+++Y K ++ A
Sbjct: 215 PNAITIATMFSICA---KTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEA 270
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F M +DV W+ MI+ A N R E+L +F+ MK + NE+T V VL+ACA+
Sbjct: 271 RREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQL 330
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSM 229
ELG ++ + + + +P+ + G ++D+ + G + A+ M
Sbjct: 331 GSDELGGQIGSHV--ESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 34/149 (22%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V+ SCA L GKQVH + + ++ +F+ TAL+D Y K G ++ A++VF M
Sbjct: 91 VVKSCAIL---AASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMP 147
Query: 129 IKDV-------------------------------CTWNAMISSLASNSREKEALVMFDE 157
+KD +WN+MI+ A +EAL +F
Sbjct: 148 VKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRR 207
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELG 186
M +G R N IT + + CA+ +E G
Sbjct: 208 MLSEGARPNAITIATMFSICAKTGDLETG 236
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 6/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GYVK GDM+SA +F M RDVV+WT++I G+ +NG EAI +F++M+
Sbjct: 265 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI--TCGPE 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +VLS CA L L GKQ+H +R+ + S + A+I +Y + G A
Sbjct: 323 PNSYTLAAVLSVCASL---ACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 379
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F + K+ TW +MI +LA + + +EA+ +F+EM G+ + IT+V VL+AC+
Sbjct: 380 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 439
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V G + + + ++ P M HY C+VDLL RAGL SEA+EF+R MP EPDA G
Sbjct: 440 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWG 499
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +L +LL + P + G Y ++N+++ RW+ A + KA E
Sbjct: 500 SLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKA 559
Query: 300 IRKIPAYS 307
+RK +S
Sbjct: 560 VRKETGFS 567
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 138/316 (43%), Gaps = 53/316 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A LFE+M R +VSW ++I G+ +NG +A+ +F M+ ++ P+E T S
Sbjct: 138 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA-PDEFTITS 196
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV----- 123
VLS+CA L G + +GKQVH YILR E+ + + ALI Y K G +E A R+
Sbjct: 197 VLSACANL---GNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 253
Query: 124 ----------------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
F M +DV W AMI N R EA+ +F
Sbjct: 254 ETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF 313
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLEL----FHSMLGKFEVVPIMEHYGCVVD 211
M G N T AVL+ CA ++ G ++ S+L + V ++
Sbjct: 314 RSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVS-----NAIIT 368
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPK 267
+ R+G A+ + + + +++ A HG AV L E+ R +E P
Sbjct: 369 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE--PD 426
Query: 268 HCGRYVVLSNI-HAGL 282
VLS HAG
Sbjct: 427 RITYVGVLSACSHAGF 442
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 40/277 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K+G + A +F M +RD VSWT ++ G R G FGEAI +M + P +
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADG--FTPTQF 59
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +VLSSCA V + G +G++VH ++++ + V + +++++YGK G E A VF
Sbjct: 60 TLTNVLSSCA--VTQAGA-VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116
Query: 125 KSMVIKDVCTWNAMIS---------------------SLAS----------NSREKEALV 153
+ M ++ V +WNAM+S S+ S N + +AL
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176
Query: 154 MFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F M E + +E T +VL+ACA V +G ++ H+ + + E+ + ++
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALIST 235
Query: 213 LGRAGLLSEAKEFM-RSMPFEPDASVLGALL-GACKI 247
++G + A+ M +SM + + ALL G KI
Sbjct: 236 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 272
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
++ K G L A VF M +D +W M+ L R EA+ +M G + T
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
VL++CA Q +G ++ HS + K + + V+++ G+ G A M
Sbjct: 61 LTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119
Query: 230 P 230
P
Sbjct: 120 P 120
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G +D + LF++M ++DVV W ++I G V+ +A+ +F+ M + +
Sbjct: 329 MISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEM--QTSNTK 386
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + LS+C+ L G L +G +H YI + + L+V +GT+L+D+Y K G + A
Sbjct: 387 PDEITMIHCLSACSQL---GALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEA 443
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + ++ T+ A+I LA + A+ F+EM + G+ +EITF+ +L+AC
Sbjct: 444 LSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHG 503
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G + F M +F + P ++HY +VDLLGRAGLL EA M SMP E DA+V GA
Sbjct: 504 GMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGA 563
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG V+L + ++LLEL P G YV+L ++ W A R+ M E G+
Sbjct: 564 LLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGV 623
Query: 301 RKIPAYSLIE 310
KIP S IE
Sbjct: 624 EKIPGCSSIE 633
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 38/272 (13%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GDM++A +F+ RD+VSW +ING+ + G +AI V+K M V+P++ T +
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEG--VKPDDVTMIG 262
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS-- 126
++SSC+ L G L GK+ + Y+ N + +++ + AL+D++ K G + A R+F +
Sbjct: 263 LVSSCSML---GDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE 319
Query: 127 -----------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDE 157
M KDV WNAMI R ++AL +F E
Sbjct: 320 KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQE 379
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ + +EIT + L+AC++ +++G+ H + K+ + + +VD+ + G
Sbjct: 380 MQTSNTKPDEITMIHCLSACSQLGALDVGI-WIHRYIEKYSLSLNVALGTSLVDMYAKCG 438
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+SEA + ++ A++G +HG
Sbjct: 439 NISEALSVFHGIQTR-NSLTYTAIIGGLALHG 469
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 109/222 (49%), Gaps = 9/222 (4%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN-VNLVRPNEATYVSV 69
+D ++ + + + ++ SW I GF + E+ ++K M+ + RP+ TY +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
CA L LG + G++L+ + L + A I ++ G +E A +VF +
Sbjct: 163 FKVCADLRLSS---LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPV 219
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN +I+ ++A+ ++ M+ +G++ +++T + ++++C+ + G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEF 279
Query: 190 FHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + G +P++ ++D+ + G + EA+ ++
Sbjct: 280 YEYVKENGLRMTIPLV---NALMDMFSKCGDIHEARRIFDNL 318
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GD+D+A LF+ M +RD V+W+++I G++ G EA+ +F M+ V
Sbjct: 186 MVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTV- 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
EAT VSVL++CA + G L GK VH Y+ + +S+ +GTAL+D+Y K G + A
Sbjct: 245 -GEATLVSVLTACAQI---GTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTA 300
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+SM ++V TW + +S LA N E L +F M+ G++ N ++FVAVL C+ A
Sbjct: 301 MEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMA 360
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F SM K+ V P EHYGC+VDL GRAG L +A F+ MP EP V GA
Sbjct: 361 GLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGA 419
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A +IH +VDL +LL ++ ++ +V LSNI+A + W + +R M G+
Sbjct: 420 LLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGV 479
Query: 301 RKIPAYSLIE 310
+K+P +S IE
Sbjct: 480 KKVPGWSTIE 489
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TA++ G ++ A +F M +D W+AMI+ R +EAL++FDEM G
Sbjct: 184 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 243
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
E T V+VLTACA+ ++ G + H + + ++ +VD+ + G + A E
Sbjct: 244 VGEATLVSVLTACAQIGTLDRG-KWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAME 302
Query: 225 FMRSM 229
SM
Sbjct: 303 VFESM 307
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K ++D+A +F + R +VSW ++I GF +NG +A+ F M V+
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT--VK 435
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYVSV+++ A L + K +HG ++R+ + +VF+ TAL+D+Y K G + A
Sbjct: 436 PDTFTYVSVITAIAEL---SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V TWNAMI ++ K AL +F+EM++ ++ N +TF++V++AC+ +
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F+ M + + M+HYG +VDLLGRAG L+EA +F+ MP +P +V GA
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+IH V+ + RL EL P G +V+L+NI+ W + +R +M+ G+
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 301 RKIPAYSLIE 310
RK P S++E
Sbjct: 673 RKTPGCSMVE 682
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++ A +F+ M +RD+VSW +I+ G+ +NG A+ + K+M NL +P+
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE-NL-KPSFI 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL + + L + +GK++HGY +R+ V + TAL+D+Y K G LE A ++F
Sbjct: 238 TIVSVLPAVSAL---RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ ++V +WN+MI + N KEA+++F +M ++G++ +++ + L ACA +E
Sbjct: 295 DGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLE 354
Query: 185 LG 186
G
Sbjct: 355 RG 356
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +++A LF+ ML+R+VVSW S+I+ +V+N EA+ +F+ M+ V+
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG--VK 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + + + L +CA L G L G+ +H + + +V + +LI +Y K ++ A
Sbjct: 335 PTDVSVMGALHACADL---GDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + + + +WNAMI A N R +AL F +M+ + ++ + T+V+V+TA A
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + + G +D A +FE + + V + +++ GF + +A+ F M + V
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM--RYDDVE 132
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + +L C +E L +GK++HG ++++ L +F T L ++Y K + A
Sbjct: 133 PVVYNFTYLLKVCG---DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ +WN +++ + N + AL M M E+ L+ + IT V+VL A +
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+L+ +G E+ ++M F+ ++ +VD+ + G L A++ M
Sbjct: 250 RLISVGKEIHGYAMRSGFD--SLVNISTALVDMYAKCGSLETARQLFDGM 297
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY NG++DSA LF+ M ++++ SW ++I+G+ +N EA+ +F M +L
Sbjct: 222 MIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSL-E 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL + A L G L LG VH ++ R ++ + +GTALID+Y K G + ++
Sbjct: 281 PDEVTIVSVLPAIADL---GALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKS 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M K+ +WNA+I++ A N R KEAL +F EM KG NEIT + VL+AC +
Sbjct: 338 RGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHS 397
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F +M +F + P +EHYGC+VDLLGRAG L EA++ M SMP+E + +L +
Sbjct: 398 GLVEEGKRWFKAM-EEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L AC V V + ++++ + G Y++L N++A +RW A +++ M G+
Sbjct: 457 FLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGV 516
Query: 301 RKIPAYSLIE 310
+K S IE
Sbjct: 517 KKEAGCSAIE 526
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 18/251 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G MD A LF+ M+ R VSWT++I G+VR+G A +F M +
Sbjct: 129 LVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM------IE 182
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ A + +++ + + LG L +E+ SV T +I Y G L+
Sbjct: 183 KDSAAFNTMI--------DAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 234
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACA 178
A +F +M K++ +WNAMIS N + EAL +F EM+ L +E+T V+VL A A
Sbjct: 235 ARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 294
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++LG H + + ++ ++D+ + G + +++ +MP E + +
Sbjct: 295 DLGALDLG-GWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASW 352
Query: 239 GALLGACKIHG 249
AL+ A I+G
Sbjct: 353 NALINAFAING 363
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 19/253 (7%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
S+I +V + E+ +++++ N + P+ T+ + SCA + ++ G+++H
Sbjct: 56 NSMIKAYVGMRQYSESFALYRDLRRNTSFT-PDSFTFSVLAKSCALNM---AIWEGQEIH 111
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
+++ L ++ TAL+D+Y K G ++ A ++F M+ + +W A+I +
Sbjct: 112 SHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMD 171
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
A +FD+M EK + F ++ A + + +LF M + V + YG
Sbjct: 172 NAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYG-- 225
Query: 210 VDLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
G L A+ +MP F +A + G + + A+ L HE+ + L+
Sbjct: 226 ---YSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNK-QPYEALKLFHEM-QSTTSLE 280
Query: 266 PKHCGRYVVLSNI 278
P VL I
Sbjct: 281 PDEVTIVSVLPAI 293
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 191/307 (62%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G++ A +F++++ +DVV+W ++I G+ +NG EAI +F NM V P++
Sbjct: 275 YEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNM--KKAGVCPDKI 332
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VLS+C+ + G L LG ++ GY + +V++GTAL+D+Y K G L++AI VF
Sbjct: 333 TLAGVLSACSAV---GALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVF 389
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACARAQLV 183
+ M K+V +WNA+I LA N + EA+ F+ M+ E GL+ ++ITF+ VL+AC A LV
Sbjct: 390 RKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLV 449
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G F+S+ +F+++P +EHY C+VD L R+G L E +F+ +P + DA +LGALL
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLA 509
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC+ V++ V R+++L+P + YVV S I+A R + + +R M E G+ K
Sbjct: 510 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKT 569
Query: 304 PAYSLIE 310
P S +E
Sbjct: 570 PGCSWVE 576
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 18/286 (6%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D +A +F + RDVVSW +++ + R G GE + ++M+ + +V PN T V
Sbjct: 178 DPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVV-PNAVTLAVV 236
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
L++C +EG L LG+ V + + +G+AL+ +Y K G + A RVF S++
Sbjct: 237 LAACR---DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIID 293
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
KDV WNAMI+ A N EA+ +F MK+ G+ ++IT VL+AC+ +ELG EL
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL 353
Query: 190 --FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
+ S G + V + +VD+ + G L +A E R M + AS AL+
Sbjct: 354 DGYASCRGLYNNVYVGT---ALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNALICGLAF 409
Query: 248 HGAVD--LCH-EVGRRLLELQPKHCGRYVVLSN-IHAGL----ERW 285
+G D + H E+ R L+P VLS +HAGL +RW
Sbjct: 410 NGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRW 455
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G ++ A +F M +R+VV WTS+I+G+ + G F EA+ +F++M + ++
Sbjct: 237 LISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDM--QITGMK 294
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T +V+SSCA + G L LG+ VH Y + + + + +LID+Y K G + +A
Sbjct: 295 VDDGTIATVVSSCAQM---GALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKA 351
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F + +DV +W AMI N EAL +F +M+ +G + NE+TF+ VLT+C+
Sbjct: 352 HEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 411
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G F M +++ P +EHYGC+VDLLGRA LL+EA++F+++MP PD V
Sbjct: 412 GGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWR 471
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC+ G V L V R+LEL+PK C +V+LSN++A RW +LR +M +
Sbjct: 472 SLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSR 531
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 532 MSKQPGCSFIE 542
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 5/162 (3%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D VSW +II+G++R G +A+ F M+ V ++ T ++ L + A G + +
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVKE--QVTLDDVTLLNALVASA---KAGKVKV 214
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ H ++ N ++ +MG++LI +Y K G +E A +VF M ++V W +MIS
Sbjct: 215 GRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQ 274
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ KEA+ +F +M+ G++ ++ T V+++CA+ ++LG
Sbjct: 275 LGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLG 316
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ SA +F+NM K +VVSW +I+G+V+ G + EA+ +F +M V+
Sbjct: 541 LIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VK 598
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVL +C+ L L GK++H +I+ +++ ++ + AL+D+Y K G ++ A
Sbjct: 599 PDAITFTSVLPACSQL---AVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEA 655
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + +D +W +MI++ S+ + EAL +F++M++ + +++TF+A+L+AC+ A
Sbjct: 656 LHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHA 715
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-FEPDASVLG 239
LV+ G F+ M+ ++ P +EHY C++DLLGR G L EA E ++ P D +L
Sbjct: 716 GLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLS 775
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
L AC +H +DL ++GR L+E P Y++LSN++A +++W+ +R + E G
Sbjct: 776 TLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELG 835
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 836 LKKNPGCSWIE 846
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 142/250 (56%), Gaps = 9/250 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +FE + +++VVSW S+I G+ G I +F+ M + +R
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM--DEEGIR 497
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T S+L +C+ VN L LGK +HGYI+RN + +F+ ++LIDLY K G + A
Sbjct: 498 PTLTTLSSILMACSRSVN---LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 554
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M +V +WN MIS EALV+F +M++ G++ + ITF +VL AC++
Sbjct: 555 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 614
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++E G E+ + ++ K E+ ++ G ++D+ + G + EA +P E D
Sbjct: 615 AVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWT 671
Query: 240 ALLGACKIHG 249
+++ A HG
Sbjct: 672 SMIAAYGSHG 681
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + AI LF+ M +RDV SW ++I+ + ++G +A+ +F+ M V+ +P+
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM--KVSGFKPDSV 400
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +V+SSCA L++ L GK++H ++R+ L F+ +AL+D+YGK GCLE A VF
Sbjct: 401 TLTTVISSCARLLD---LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVF 457
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + K+V +WN+MI+ + K + +F M E+G+R T ++L AC+R+ ++
Sbjct: 458 EQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQ 517
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + H + + V + ++DL + G + A+ ++MP
Sbjct: 518 LG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 9/265 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I+ Y SA L+F+ + D+ W ++ +N F E + VF ++ + +
Sbjct: 236 LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLL-HFPYL 294
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ TY SVL +C+GL G + GK VH +++++ + V + ++ + +Y K E
Sbjct: 295 KPDAFTYPSVLKACSGL---GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED 351
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI++F M +DV +WN +IS + + ++AL +F+EMK G + + +T V+++CAR
Sbjct: 352 AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCAR 411
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+E G E+ ++ F + + +VD+ G+ G L AKE + +
Sbjct: 412 LLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSW 468
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE 263
+++ + G C E+ RR+ E
Sbjct: 469 NSMIAGYSLKGDSKSCIELFRRMDE 493
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 180/306 (58%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ M +RDVVSW+++I +V NGC EA F M N V P+
Sbjct: 409 YAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLM--KRNNVEPDVV 466
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+++L++C L G L LG +++ ++ ++V + +G ALI++ K G +ERA +F
Sbjct: 467 TYINLLNACGHL---GALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIF 523
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
++MV +DV TWN MI + + +EAL +FD M ++ R N +TFV VL+AC+RA VE
Sbjct: 524 ENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVE 583
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F +L +VP ME YGC+VDLLGRAG L EA+ + MP +P++S+ LL A
Sbjct: 584 EGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAA 643
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+I+G +D+ R L +P YV LS+++A W +RK M G+RK
Sbjct: 644 CRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQ 703
Query: 305 AYSLIE 310
+ IE
Sbjct: 704 GCTWIE 709
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 59/339 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ YVK G MD A +F+ + KRDV ++ +I G+ ++G +A +F M +
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG--FK 260
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN +++S+L C+ L GK VH + +V V + TALI +Y G +E A
Sbjct: 261 PNRISFLSILDGCS---TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGA 317
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M ++DV +W MI A NS ++A +F M+E+G++ + IT++ ++ ACA +
Sbjct: 318 RRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASS 377
Query: 181 QLVELGLELFHSMLGK--------FEVVPIMEHYGC--------VVDLLGRAGLLS---- 220
+ L E+ HS + + + + + C V D + R ++S
Sbjct: 378 ADLSLAREI-HSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAM 436
Query: 221 --------------EAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE---------- 256
E M+ EPD LL AC GA+DL E
Sbjct: 437 IGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADL 496
Query: 257 -----VGRRLLELQPKHC----GRYVVLSNIHAGLERWN 286
VG L+ + KH RY+ + + + WN
Sbjct: 497 VSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWN 535
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 134/257 (52%), Gaps = 11/257 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y+ G ++ A +F+ M RDVVSWT +I G+ N +A +F M ++
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM--QEEGIQ 361
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TY+ ++++CA + L L +++H ++R + + TAL+ +Y K G ++ A
Sbjct: 362 PDRITYIHIINACA---SSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDA 418
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M +DV +W+AMI + N +EA F MK + + +T++ +L AC
Sbjct: 419 RQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHL 478
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG+E++ + K ++V + ++++ + G + A+ +M + D
Sbjct: 479 GALDLGMEIYTQAI-KADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNV 536
Query: 241 LLGACKIHG----AVDL 253
++G +HG A+DL
Sbjct: 537 MIGGYSLHGNAREALDL 553
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 101/178 (56%), Gaps = 5/178 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G+M A F+++ + VV+W +II G+ + G EA +F+ M+ + P+ T++
Sbjct: 110 GNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEA--MEPSIITFLI 167
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL +C+ + GL LGK+ H +++ V +GTAL+ +Y K G ++ A +VF +
Sbjct: 168 VLDACS---SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLY 224
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+DV T+N MI A + ++A +F M+++G + N I+F+++L C+ + + G
Sbjct: 225 KRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWG 282
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ TYV + C L + G LGKQV +I+++ L+++ LI L+ G + A
Sbjct: 60 DSRTYVKLFQRCMMLRDAG---LGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEAR 116
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
+ F S+ K V TWNA+I+ A KEA +F +M ++ + + ITF+ VL AC+
Sbjct: 117 QTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPA 176
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
++LG E FH+ + K V +V + + G + A++ + ++ D S +
Sbjct: 177 GLKLGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVM 234
Query: 242 LG 243
+G
Sbjct: 235 IG 236
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y +MD A +F+ + + VV++ ++I G+ R EA+ +F+ + NL +
Sbjct: 162 LINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQAR-NL-K 219
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T +SVLSSCA L G L LGK +H Y+ +N V + TALID+Y K G L+ A
Sbjct: 220 PTDVTMLSVLSSCALL---GALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF++M ++D W+AMI + A + +A+ +F EM++ G +EITF+ +L AC+
Sbjct: 277 VCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHT 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G E F+ M K+ V+P ++HYGC+VDLLGRAG L EA EF+ +P P +
Sbjct: 337 GLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRT 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG V+L V ++ EL H G Y++LSN+ A RW +RK M E G+
Sbjct: 397 LLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGV 456
Query: 301 RKIPAYSLIE 310
KIP S +E
Sbjct: 457 VKIPGCSSVE 466
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 7/239 (2%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A LF+ + + D+V + ++ G+ R A +F ++ + + P++ T+ S+L
Sbjct: 71 MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQIL--FSGLFPDDYTFPSLL 128
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+CA L G+Q+H ++ + +V++ LI++Y ++ A RVF +
Sbjct: 129 KACASC---KALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEP 185
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
V T+NAMI+ A SR EAL +F E++ + L+ ++T ++VL++CA ++LG +
Sbjct: 186 CVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG-KWM 244
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
H + K ++ ++D+ + G L +A +M D A++ A IHG
Sbjct: 245 HEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHG 302
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 189/309 (61%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY K+G +D A LF+ M RD++++ S++ G++ +G EA+ +F +M + +R
Sbjct: 312 IIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD--LR 369
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V++L++CA L G L G+ +H I + + +++GTAL+D+Y K G ++ A
Sbjct: 370 VDNFTVVNLLTACASL---GALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +DV TW AMI+ LA N K AL F +M+ G + N ++++AVLTAC+ +
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F M + + P +EHYGC++DLLGR+GLL EA + +++MP +P+A + +
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H +DL LL+L+P G YV L NI+ +W A+ +R M E +
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606
Query: 301 RKIPAYSLI 309
+K YS I
Sbjct: 607 KKTAGYSSI 615
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 37/221 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G K G + LL RDV+SWTS+I + R EA+ FK M+ + +
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG--IA 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T ++VLS+CA L + L LG+ +H + + S + ALID+Y K G A
Sbjct: 237 PDEVTVIAVLSACAKLKD---LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293
Query: 121 IRVFKS--------------------------------MVIKDVCTWNAMISSLASNSRE 148
+VF + M ++D+ T+N+M++ + +
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQL 353
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+EAL++F M+ LR + T V +LTACA ++ G L
Sbjct: 354 REALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCL 117
VRP+ T+ + + L L +H LR + + F+ +LI +Y ++G
Sbjct: 99 VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLA 158
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLAS-------------------------------NS 146
A R F + +KD W +IS LA +
Sbjct: 159 ADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRAN 218
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
R +EA+ F M G+ +E+T +AVL+ACA+ + +ELG L +L + + +P E+
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSL--HLLVEEKGMPTSENL 276
Query: 207 -GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL-GACKIHGAVDL 253
++D+ + G A++ ++ P A++ G CK HG VD+
Sbjct: 277 VVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK-HGHVDV 324
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+++NG+++ A LF M +++V++WT+++ G+V++G EA+ VF M+ N ++
Sbjct: 225 MITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLA-TNELK 283
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+V+VL +C+ L GL G+Q+H I + S + +ALI++Y K G L A
Sbjct: 284 PNTGTFVTVLGACSDL---AGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTA 340
Query: 121 IRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
++F ++ +D+ +WN MI++ A + KEA+ +F+EM+E G+ AN++TFV +LTAC+
Sbjct: 341 RKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACS 400
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LVE G + F +L + +HY C+VDL GRAG L EA + + E +V
Sbjct: 401 HTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVW 460
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C +HG D+ V ++L+++P++ G Y +LSN++A + +W A ++R M +
Sbjct: 461 GALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDM 520
Query: 299 GIRKIPAYSLIE 310
G++K P S IE
Sbjct: 521 GLKKQPGCSWIE 532
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 49/275 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY+K + A LF M R+VVSW ++++G+ RNG +A+ +F+ M N+V
Sbjct: 70 MVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRR-MPERNVVS 128
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T ++ L C + + L+ +++ V+S T ++ K G +E A
Sbjct: 129 WN--TIITALVQCGRIEDAQRLFDQ-------MKDRDVVS---WTTMVAGLAKNGRVEDA 176
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA--------------- 165
+F M +++V +WNAMI+ A N R EAL +F M E+ + +
Sbjct: 177 RALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELN 236
Query: 166 ------------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
N IT+ A++T + L E L +F ML E+ P + G V +L
Sbjct: 237 RAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKP---NTGTFVTVL 293
Query: 214 GR----AGLL--SEAKEFMRSMPFEPDASVLGALL 242
G AGL + + + F+ V+ AL+
Sbjct: 294 GACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALI 328
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 109/237 (45%), Gaps = 47/237 (19%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+ G++D A +FE M +RD+ WT++I G+++ G EA +F N+V T+
Sbjct: 13 REGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVV-----TW 67
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-----------VLSVFMGTALIDLYGKVG 115
++ V+GYI N++ + +V ++D Y + G
Sbjct: 68 TAM------------------VNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNG 109
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
++A+ +F+ M ++V +WN +I++L R ++A +FD+MK++ + +++ ++
Sbjct: 110 LTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDV----VSWTTMVA 165
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEFMRSMP 230
A+ VE LF M P+ + ++ + L EA + + MP
Sbjct: 166 GLAKNGRVEDARALFDQM-------PVRNVVSWNAMITGYAQNRRLDEALQLFQRMP 215
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 183/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G MD A +F+ M ++++VSW S+I GF++N + +A+ MMG +
Sbjct: 396 MISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLV-MMGKEG-KK 453
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+++T+ LS+CA L L +G Q+H YIL++ + +F+G ALI +Y K G ++ A
Sbjct: 454 PDQSTFACTLSACANL---AALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSA 510
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ + D+ +WN++IS A N +A F++M + + +E+TF+ +L+AC+ A
Sbjct: 511 EQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHA 570
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L GL++F M+ F + P+ EHY C+VDLLGR G L EA +R M + +A + G+
Sbjct: 571 GLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGS 630
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H ++L RL EL+P + Y+ LSN+HA RW +R M
Sbjct: 631 LLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRA 690
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 691 GKQPGCSWIE 700
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 46/226 (20%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV++ +D A+ LF+ M +D VSWT+IING++R G EA V+ M
Sbjct: 272 MIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM-------- 323
Query: 61 P-NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P + T + L S GL+ G + Q+ I +++V ++I Y + G ++
Sbjct: 324 PCKDITAQTALMS--GLIQNGRIDEADQMFSRIGAHDVVC----WNSMIAGYSRSGRMDE 377
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------------------ 161
A+ +F+ M IK+ +WN MIS A + A +F M+EK
Sbjct: 378 ALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLY 437
Query: 162 -------------GLRANEITFVAVLTACARAQLVELGLELFHSML 194
G + ++ TF L+ACA +++G +L +L
Sbjct: 438 LDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYIL 483
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 125/263 (47%), Gaps = 23/263 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY +NG M A+ FE+M +R+VVSW ++ G+V++G A +F+ +
Sbjct: 179 MLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFE------KIPN 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN ++V++L GL G + +++ + +V A+I Y + ++ A
Sbjct: 233 PNAVSWVTML---CGLAKYGKMAEARELFDRMPSKNVV----SWNAMIATYVQDLQVDEA 285
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++FK M KD +W +I+ + EA ++++M K + A A+++ +
Sbjct: 286 VKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQ----TALMSGLIQN 341
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ ++F S +G +VV + ++ R+G + EA R MP + S
Sbjct: 342 GRIDEADQMF-SRIGAHDVVC----WNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTM 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLE 263
+ G + G +D E+ + + E
Sbjct: 397 ISGYAQA-GQMDRATEIFQAMRE 418
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 26/300 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K G + A +FE M +D+VS+ S++ G+ +NG A+ F++M
Sbjct: 148 MIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESM-------- 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS AG V G L Q+ I V V M L K G + A
Sbjct: 200 -TERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGL----AKYGKMAEA 254
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K+V +WNAMI++ + + EA+ +F +M K + +++ ++ R
Sbjct: 255 RELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTIINGYIRV 310
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ ++++ M K I + L+ + G + EA + M S D +
Sbjct: 311 GKLDEARQVYNQMPCK----DITAQTALMSGLI-QNGRIDEADQ-MFSRIGAHDVVCWNS 364
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
++ G +D + R ++ K+ + + + +A + +RAT++ +AM E I
Sbjct: 365 MIAGYSRSGRMDEALNLFR---QMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNI 421
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
GK+G +E AIR+F +M K++ T+N+MIS LA N+R ++A +FD+M + L +++
Sbjct: 28 GKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNL----VSWN 83
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSM 229
++ +VE EL F+V+P +++ ++ R G L +A+E + +
Sbjct: 84 TMIAGYLHNNMVEEASEL-------FDVMPERDNFSWALMITCYTRKGKLEKARELLELV 136
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEV 257
P + D + A++ G + +V
Sbjct: 137 PDKLDTACWNAMIAGYAKKGQFNDAKKV 164
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI KN + A LF+ M R++VSW ++I G++ N EA +F V
Sbjct: 54 MISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFD--------VM 105
Query: 61 PNEATYV-SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P + +++ +C +G L +++ + L A+I Y K G
Sbjct: 106 PERDNFSWALMITC--YTRKGKLEKARELLELVPDK---LDTACWNAMIAGYAKKGQFND 160
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF+ M KD+ ++N+M++ N + AL F+ M E+ N +++ ++ +
Sbjct: 161 AKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTER----NVVSWNLMVAGYVK 216
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--GLLSEAKEFMRSMP 230
+ + +L FE +P V L G A G ++EA+E MP
Sbjct: 217 SGDLSSAWQL-------FEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMP 262
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
++I + K + A ++F M ++++ +WN MI+ N+ +EA +FD M E+
Sbjct: 52 NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER--- 108
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL---GRAGLLSE 221
+ ++ ++T R +E EL E+VP C ++ + G ++
Sbjct: 109 -DNFSWALMITCYTRKGKLEKAREL-------LELVPDKLDTACWNAMIAGYAKKGQFND 160
Query: 222 AKEFMRSMPFEPDASVLGALLGAC---KIHGAVDLCHEVGRR 260
AK+ MP + S L G K+H A+ + R
Sbjct: 161 AKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTER 202
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 6/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K GD+ +A + F M +R+VVSW S+I+ +V++G F EA+ +F M+ +
Sbjct: 175 MISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEG--IT 232
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+VSV S+C+ L G L LG ++H Y + + L V TALI++Y K G + RA
Sbjct: 233 PDGYTFVSVFSACSHL---GNLMLGTKIH-YAIDDFSQLGVIAATALIEMYAKCGDINRA 288
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV WN M+ SLA + + ++AL +F M+++GL+ N+ TF+ L AC+
Sbjct: 289 FNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHG 348
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+VE G +F M ++++ P +EH+GC+VDLL R G L EA + + MPFE D ++ GA
Sbjct: 349 GMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGA 408
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG CK+ G E+ R +L+ K G +V SN++A +E+W A + R+ M I
Sbjct: 409 LLGGCKLRGDFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENI 468
Query: 301 RKIPAYSLI 309
K S +
Sbjct: 469 LKKTGQSSV 477
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 49/217 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y GD+ A LF M RD VSW ++I+G+++ G +A +F+ M
Sbjct: 113 MILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKM-------- 164
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + +V T++I Y K G L A
Sbjct: 165 PEK------------------------------------NVVSWTSMISAYAKAGDLATA 188
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M ++V +WN+MISS + +EAL +F++M +G+ + TFV+V +AC+
Sbjct: 189 RMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHL 248
Query: 181 QLVELGLELFH-----SMLGKFEVVPIMEHYGCVVDL 212
+ LG ++ + S LG ++E Y D+
Sbjct: 249 GNLMLGTKIHYAIDDFSQLGVIAATALIEMYAKCGDI 285
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 6/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GYVK GDM+SA +F M RDVV+WT++I G+ +NG EAI +F++M+
Sbjct: 371 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI--TCGPE 428
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +VLS CA L L GKQ+H +R+ + S + A+I +Y + G A
Sbjct: 429 PNSYTLAAVLSVCASL---ACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWA 485
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F + K+ TW +MI +LA + + +EA+ +F+EM G+ + IT+V VL+AC+
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 545
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V G + + + ++ P M HY C+VDLL RAGL SEA+EF+R MP EPDA G
Sbjct: 546 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWG 605
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +L +LL + P + G Y ++N+++ RW+ A + KA E
Sbjct: 606 SLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKA 665
Query: 300 IRKIPAYS 307
+RK +S
Sbjct: 666 VRKETGFS 673
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 138/316 (43%), Gaps = 53/316 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A LFE+M R +VSW ++I G+ +NG +A+ +F M+ ++ P+E T S
Sbjct: 244 GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA-PDEFTITS 302
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV----- 123
VLS+CA L G + +GKQVH YILR E+ + + ALI Y K G +E A R+
Sbjct: 303 VLSACANL---GNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 359
Query: 124 ----------------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
F M +DV W AMI N R EA+ +F
Sbjct: 360 ETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF 419
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLEL----FHSMLGKFEVVPIMEHYGCVVD 211
M G N T AVL+ CA ++ G ++ S+L + V ++
Sbjct: 420 RSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVS-----NAIIT 474
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPK 267
+ R+G A+ + + + +++ A HG AV L E+ R +E P
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE--PD 532
Query: 268 HCGRYVVLSNI-HAGL 282
VLS HAG
Sbjct: 533 RITYVGVLSACSHAGF 548
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 40/277 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K+G + A +F M +RD VSWT ++ G R G FGEAI +M + P +
Sbjct: 108 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADG--FTPTQF 165
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +VLSSCA V + G +G++VH ++++ + V + +++++YGK G E A VF
Sbjct: 166 TLTNVLSSCA--VTQAGA-VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222
Query: 125 KSMVIKDVCTWNAMIS---------------------SLAS----------NSREKEALV 153
+ M ++ V +WNAM+S S+ S N + +AL
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 282
Query: 154 MFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F M E + +E T +VL+ACA V +G ++ H+ + + E+ + ++
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALIST 341
Query: 213 LGRAGLLSEAKEFM-RSMPFEPDASVLGALL-GACKI 247
++G + A+ M +SM + + ALL G KI
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 93 LRNEIVLS---VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
L +EI L+ VF +L+ ++ K G L A VF M +D +W M+ L R
Sbjct: 87 LFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFG 146
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EA+ +M G + T VL++CA Q +G ++ HS + K + + V
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGSCVPVANSV 205
Query: 210 VDLLGRAGLLSEAKEFMRSMP 230
+++ G+ G A MP
Sbjct: 206 LNMYGKCGDSETATTVFERMP 226
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ YVK +D A F+ M +RDVV+W+++I G+ +NG E++ +F+ M +
Sbjct: 346 LMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM--KATNCK 403
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA L G LG+Q+ YI + L+ ++G+ALID+Y K G + RA
Sbjct: 404 PNEVTLVGVLSACAQL---GSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARA 460
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K V TWN+MI LA N ++A+ ++ +M G++ NE+TFVA+LTAC A
Sbjct: 461 RSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHA 520
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G+ F M K V P +EH C+VDLL ++G L EA +F+ M EP+A +
Sbjct: 521 GLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWST 580
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H V+L +L+ L+P + YV+LSNI+A W ++R M +
Sbjct: 581 LLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNL 640
Query: 301 RKIPAYSLIE 310
+K+ AYS IE
Sbjct: 641 QKLSAYSWIE 650
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 9/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K+GD++ A LF++M +R SW S+I + G F EA+ +F M+
Sbjct: 246 LITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREG--AS 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +V S CA G L G++ +I R E + +V + TAL+++Y K ++ A
Sbjct: 304 PNAITITTVFSICA---KTGDLDTGRRARAWI-REEDLQNVIVHTALMEMYVKCRAIDEA 359
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M +DV W+ MI+ + N R E+L +F+ MK + NE+T V VL+ACA+
Sbjct: 360 RHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQL 419
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSM 229
ELG ++ + + + + +P+ + G ++D+ + G ++ A+ M
Sbjct: 420 GSDELGEQIGNYI--ESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM 467
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 34/149 (22%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VL SCA G Q H + L ++ VF+ TAL+D Y K G ++ A+ FK M
Sbjct: 180 VLKSCA---QSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMP 236
Query: 129 IKDV-------------------------------CTWNAMISSLASNSREKEALVMFDE 157
+KD +WN+MI+ A +EAL +FD+
Sbjct: 237 VKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQ 296
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELG 186
M +G N IT V + CA+ ++ G
Sbjct: 297 MLREGASPNAITITTVFSICAKTGDLDTG 325
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 6/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++GYVK GDM+SA +F M RDVV+WT++I G+ +NG EAI +F++M+
Sbjct: 371 LLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI--TCGPE 428
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +VLS CA L L GKQ+H +R+ + S + A+I +Y + G A
Sbjct: 429 PNSYTLAAVLSVCASL---ACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWA 485
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F + K+ TW +MI +LA + + +EA+ +F+EM G+ + IT+V VL+AC+
Sbjct: 486 RRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSH 545
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A V G + + + ++ P M HY C+VDLL RAGL SEA+EF+R MP EPDA G
Sbjct: 546 AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWG 605
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +L +LL + P + G Y ++N+++ RW+ A + KA E
Sbjct: 606 SLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKA 665
Query: 300 IRKIPAYS 307
+RK +S
Sbjct: 666 VRKETGFS 673
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 138/316 (43%), Gaps = 53/316 (16%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A LFE+M R +VSW ++I G+ +NG +A+ +F M+ ++ P+E T S
Sbjct: 244 GRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMA-PDEFTITS 302
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV----- 123
VLS+CA L G + +GKQVH YILR E+ + + ALI Y K G +E A R+
Sbjct: 303 VLSACANL---GNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSM 359
Query: 124 ----------------------------FKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
F M +DV W AMI N R EA+ +F
Sbjct: 360 ETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF 419
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLEL----FHSMLGKFEVVPIMEHYGCVVD 211
M G N T AVL+ CA ++ G ++ S+L + V ++
Sbjct: 420 RSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVS-----NAIIT 474
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPK 267
+ R+G A+ + + + +++ A HG AV L E+ R +E P
Sbjct: 475 MYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE--PD 532
Query: 268 HCGRYVVLSNI-HAGL 282
VLS HAG
Sbjct: 533 RITYVGVLSACSHAGF 548
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 40/277 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K+G + A +F M +RD VSWT ++ G R G FGEAI +M + P +
Sbjct: 108 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADG--FTPTQF 165
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +VLSSCA V + G +G++VH ++++ + V + +++++YGK G E A VF
Sbjct: 166 TLTNVLSSCA--VTQAGA-VGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVF 222
Query: 125 KSMVIKDVCTWNAMIS---------------------SLAS----------NSREKEALV 153
+ M ++ V +WNAM+S S+ S N + +AL
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALK 282
Query: 154 MFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F M E + +E T +VL+ACA V +G ++ H+ + + E+ + ++
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALIST 341
Query: 213 LGRAGLLSEAKEFM-RSMPFEPDASVLGALL-GACKI 247
++G + A+ M +SM + + ALL G KI
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 12/188 (6%)
Query: 93 LRNEIVLS---VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
L +EI L+ VF +L+ ++ K G L A VF M +D +W M+ L R
Sbjct: 87 LFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFG 146
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EA+ +M G + T VL++CA Q +G ++ HS + K + + V
Sbjct: 147 EAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGSCVPVANSV 205
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269
+++ G+ G A MP S A++ G +DL L E P
Sbjct: 206 LNMYGKCGDAETASTVFERMPVR-SVSSWNAMVSLNTHLGRMDLAES----LFESMP--- 257
Query: 270 GRYVVLSN 277
GR +V N
Sbjct: 258 GRSIVSWN 265
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD A L+F+ + R+ VSW ++I G R +A+ +F+ M+ + R
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG--FR 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +Y S+ +C+ + G L GK VH Y++++ L F G L+D+Y K G + A
Sbjct: 260 PSHFSYASLFGACS---STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +DV +WN+++++ A + KEA+ F+EM+ G+R NEI+F++VLTAC+ +
Sbjct: 317 RKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHS 376
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G ++ ++ K +VP HY VVDLLGRAG L+ A F+ MP EP A++ A
Sbjct: 377 GLLDEGWH-YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +L + EL P G +V+L NI+A RWN A +RK M E+G+
Sbjct: 436 LLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 496 KKEPACSWVE 505
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G ++ A +FE M +RD V+WT++I+G+ ++ +A+ F M+
Sbjct: 101 LLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG--YS 158
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SV+ + A E G Q+HG+ ++ +V +G+AL+DLY + G ++ A
Sbjct: 159 PNEFTLSSVIKAAAA---ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF ++ ++ +WNA+I+ A S ++AL +F M G R + ++ ++ AC+
Sbjct: 216 QLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST 275
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + M+ E + + ++D+ ++G + +A++ + + D +
Sbjct: 276 GFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNS 333
Query: 241 LLGACKIHG 249
LL A HG
Sbjct: 334 LLTAYAQHG 342
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L G+ VH +IL++ + MG L+++Y K G LE A +VF+ M +D TW +IS
Sbjct: 76 LIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ + R +AL+ F++M G NE T +V+ A A + G +L H K
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL-HGFCVKCGFDS 194
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
+ ++DL R GL+ +A+ ++ D S + G + G
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENML-KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI Y +NG++D A+ LFE ++D V+W S+I+G++ +G EA+ ++ M + +
Sbjct: 406 MISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITM--HRLSI 463
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ +T+ ++ +C+ L G L G+ +H ++++ +V++GT+LID+Y K G +
Sbjct: 464 QQTRSTFSALFHACSCL---GSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIME 520
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A F S+ +V W A+I+ A + EA+ +FD M E+GL N TFV VL+AC+R
Sbjct: 521 AQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSR 580
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+++FHSM + V P +EHY CVVDLLGR+G + EA+EF++ MP E D V G
Sbjct: 581 AGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWG 640
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC +++ V ++ PK YV+LSNI+AGL RW +RK +
Sbjct: 641 ALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFK 700
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 701 VKKDPGCSWIE 711
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 16/245 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRN--GCFGEAICVFKNMMGNVNL 58
M+ GYV MD A+ +F M +RDVV+WT++I+GF +N GC G+A+ +F+ MM +
Sbjct: 210 MLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGC-GKALEMFRLMMRS-GE 267
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PNE T+ V+ +C L G L +G+ VHG +++ + +G AL++ Y + ++
Sbjct: 268 TTPNEFTFDCVVRACGRL---GILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAID 324
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A+RV K +V + N++I L S R ++A ++F+ M E N +++ ++ A
Sbjct: 325 DALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE----MNPVSYNLMIKGYA 380
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ LF M + + ++ + R G + +A E E D
Sbjct: 381 VGGQMDDSKRLFEKMPCR-----TIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTW 435
Query: 239 GALLG 243
+++
Sbjct: 436 NSMIS 440
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 19/248 (7%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y K +D A LF+ M +R VVSW ++I+ + ++G F EA+ + +M + + ++
Sbjct: 79 ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM--HRSHMKL 136
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+E+T+ SVLS CA L L GK +H +L++ +G+AL+ Y + A
Sbjct: 137 SESTFSSVLSVCARL---RCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEAR 193
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT----AC 177
RVF +V ++ W+ M+ + + +AL +F +M + + A T ++ + C
Sbjct: 194 RVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVA-WTTLISGFSKNGDGC 252
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPD 234
+A LE+F M+ E P + CVV GR G+LS + + E D
Sbjct: 253 GKA------LEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 306
Query: 235 ASVLGALL 242
S+ GAL+
Sbjct: 307 PSIGGALV 314
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ NG++ A +F+ M ++D +W+++I + R G EA+ +F M VR
Sbjct: 270 MIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLM--QREGVR 327
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN + +S+LS C L + L G+QVH ++R+ L +++ + LI +Y K G L
Sbjct: 328 PNFPSIISILSVCGSLAS---LDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTG 384
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF KD+ WN++I+ A + ++AL +F EM G +EITF+ VL+AC
Sbjct: 385 KRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYT 444
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GLE+F SM K++V EHY C+VDLLGRAG L+EA + +MP E DA V GA
Sbjct: 445 GKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGA 504
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ H +DL ++LL+L+P G Y++LSN++A RW +LRK M +
Sbjct: 505 LLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNV 564
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 565 SKSPGCSWIE 574
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY N A LF+ M +R+ +SW +++G+V+NG EA VF M
Sbjct: 53 IVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKM-------- 104
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS S G V EG + + + + +V M LI+ G ++ A
Sbjct: 105 -PERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIE----DGRVDEA 159
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + +KDV MI L S R EA +FDEM ++ N + + ++++ A
Sbjct: 160 RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQR----NVVAWTSMISGYAMN 215
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V++ +LF M K EV + ++ R+G ++EA E ++MP +P A+ G
Sbjct: 216 NKVDVARKLFEVMPDKNEVT-----WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGM 270
Query: 241 LLG 243
++G
Sbjct: 271 IMG 273
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 57/269 (21%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF-----KNMM-- 53
++ GYVKNG + A +F+ M +R+VVSWTS++ G+V+ G EA +F KN++
Sbjct: 84 LVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSW 143
Query: 54 -----GNVNLVRPNEA----------TYVSVLSSCAGLVNEGGLYLGKQV---------- 88
G + R +EA V+ + GL +EG L +++
Sbjct: 144 TVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVV 203
Query: 89 ------HGYILRNEIVLSVFM-----------GTALIDLYGKVGCLERAIRVFKSMVIKD 131
GY + N++ ++ + TA++ Y + G + A +FK+M +K
Sbjct: 204 AWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKP 263
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
V N MI N +A +FD+MKEK ++ T+ A++ R L LF
Sbjct: 264 VAACNGMIMGFGLNGEVGKARWVFDQMKEK----DDGTWSALIKIYERKGFELEALALF- 318
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
S++ + V P ++ ++ +L G L+
Sbjct: 319 SLMQREGVRP---NFPSIISILSVCGSLA 344
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
I + ++G ++RA +F + K V +WNA+++ N R EA +FD+M E+ N
Sbjct: 23 ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NT 78
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227
I++ +++ + ++ ++F M + V + +V + GL+ EA+
Sbjct: 79 ISWNGLVSGYVKNGMISEARKVFDKMPERNVV-----SWTSMVRGYVQEGLIDEAELLFW 133
Query: 228 SMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287
MP E + +LG G VD RRL ++ P V +N+ GL R
Sbjct: 134 RMP-EKNVVSWTVMLGGLIEDGRVD----EARRLFDMIP--VKDVVASTNMIGGLCSEGR 186
Query: 288 ATDLRKAMVEAGIRKIPAYS 307
++ R+ E R + A++
Sbjct: 187 LSEAREIFDEMPQRNVVAWT 206
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY KNG ++ A +F M +DVVSW+++I G+ + EA+ +F +M + V+
Sbjct: 82 MVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDM--QRSGVK 139
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +SV+S+CA N G L + +H ++ + + + +G ALID++ K G L A
Sbjct: 140 PDEITMLSVISACA---NVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLA 196
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF +M K+V TW ++I++ A + + AL +F+ MK +G++ N +TF+ +L AC A
Sbjct: 197 LDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHA 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF M+ ++ + P+ EHYGC+VDLLGRA LL +A + ++SM P+ + G+
Sbjct: 257 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 316
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++HG ++L +++LEL P H G V+LSNI+A WN ++R M G
Sbjct: 317 LLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMEVQGT 376
Query: 301 RKIPAYSLIE 310
K S +E
Sbjct: 377 WKKKGCSWME 386
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 36/222 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG------ 112
V P++ +VLS+CA N L GK +H Y+L ++ ++ + AL+++Y
Sbjct: 6 VVPDQVIIATVLSTCAHTRN---LRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADME 62
Query: 113 -------------------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
K G +E A +F M KDV +W+AMI+ A +S+
Sbjct: 63 MAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSK 122
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EAL +F +M+ G++ +EIT ++V++ACA +E HS + + I+
Sbjct: 123 PMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKA-RCIHSFVENHSMCKILPIGN 181
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++D+ + G L+ A + +MP + + +++ A +HG
Sbjct: 182 ALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMHG 222
>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
Length = 523
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 186/313 (59%), Gaps = 10/313 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GD+ A +F + RD+V W ++I G+ +NG G+AI F NM G
Sbjct: 214 MISGYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEG--YE 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SVLS+CA G L +G++VH I R I L+ F+ ALID+Y K G LE A
Sbjct: 272 PDAVTVSSVLSACA---QSGRLDVGREVHSLINRKGIELNQFVSNALIDMYAKCGDLENA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+S+ ++ + WN+MIS LA + + EAL MF M L+ +EITF+AVLTAC
Sbjct: 329 TSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHG 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ GL++F M + +V P ++H+GC++ LLGR+G L EA +R MP +P+ +VLGA
Sbjct: 389 GFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGKLKEAYRLVREMPVKPNDTVLGA 447
Query: 241 LLGACKIHGAVDLCHEVGRRLL---ELQPKHCGRYVV-LSNIHAGLERWNRATDLRKAMV 296
LLGACK+H ++ +V + ++ + C ++ +SN++A ERW A LR M
Sbjct: 448 LLGACKVHMDTEIAEQVMKIIVTVGSITNSDCENHLASISNLYAHTERWETAEALRVEME 507
Query: 297 EAGIRKIPAYSLI 309
+ G+ K P S +
Sbjct: 508 KRGLEKSPGLSSV 520
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 19/287 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY+ NGD SA LFE + + R+ V+W ++ G+ + +A +F+ M
Sbjct: 118 MIGGYMGNGDAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFERM------- 170
Query: 60 RPNEATYVSVLSSCAGL-VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E V S G+ V+ + ++ I + F+ + +I Y ++G +
Sbjct: 171 -PFELKNVKAWSVMLGVYVSHRKMEDARKFFEDIPEK----NSFVWSLMISGYFRIGDVH 225
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF + +D+ WN +I+ A N +A+ F M+ +G + +T +VL+ACA
Sbjct: 226 EATSVFYRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACA 285
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ +++G E+ HS++ + + ++D+ + G L A S+ A
Sbjct: 286 QSGRLDVGREV-HSLINRKGIELNQFVSNALIDMYAKCGDLENATSVFESLSLRSLA-CW 343
Query: 239 GALLGACKIHGAVDLCHEVGRRL--LELQPKHCGRYVVLSN-IHAGL 282
+++ IHG + E+ R + L+L+P VL+ +H G
Sbjct: 344 NSMISCLAIHGKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHGGF 390
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +CA +V + LGK +H ++ + V +G++LI +YGK GC+ A +VF M
Sbjct: 51 ILKACACVVPR--VVLGKLLHSESIKFGVCSDVMVGSSLISMYGKWGCVVSARKVFDEMP 108
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++V TWNAMI N A +F+E+ + N +T++ ++ + + +E E
Sbjct: 109 ERNVATWNAMIGGYMGNGDAVSASGLFEEIS---VCRNTVTWIEMMKGYGKRKEIEKARE 165
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LF M FE+ + + + ++ + + +A++F +P
Sbjct: 166 LFERM--PFELKNV-KAWSVMLGVYVSHRKMEDARKFFEDIP 204
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G ++ A LF ++ RDVV+WT+++ G+ + G EAI +F+ M ++
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG--IK 347
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ SVL+SC+ + L GK++H ++ L V++ +AL+ +Y K G ++ A
Sbjct: 348 PDKMTFTSVLTSCS---SPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDA 404
Query: 121 IRVFKSMVIKDVCTWNAMISSL-ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF M ++V W A+I+ A + R +EAL FD+MK++G++ +++TF +VL+AC
Sbjct: 405 SLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTH 464
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G + F SM + + P++EHY C VDLLGRAG L EA+ + SMPF P SV G
Sbjct: 465 VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWG 524
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC++H V+ +L+L P G YV LS+I+A R+ A +R+ M +
Sbjct: 525 ALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRD 584
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 585 VVKEPGQSWIE 595
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 125/245 (51%), Gaps = 6/245 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K GD+ A ++F+ + +++VV+WT +I G+ + G A+ + + M V PN+
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE--VAPNKI 250
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L C L GK+VH YI+++ +++ +LI +Y K G LE A ++F
Sbjct: 251 TFASILQGC---TTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLF 307
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ +DV TW AM++ A EA+ +F M+++G++ +++TF +VLT+C+ ++
Sbjct: 308 SDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQ 367
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G + ++ + + +V + + G + +A M + + G
Sbjct: 368 EGKRIHQQLVHAGYNLDVYLQ-SALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGC 426
Query: 245 CKIHG 249
C HG
Sbjct: 427 CAQHG 431
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 20/233 (8%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+++ R++VSWT++I FV EA ++ M + +P++
Sbjct: 92 YAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETM--KLAGCKPDKV 149
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VS+L++ N L LG++VH I+ + L +GT+L+ +Y K G + +A +F
Sbjct: 150 TFVSLLNA---FTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ K+V TW +I+ A + AL + + M++ + N+ITF ++L C +E
Sbjct: 207 DRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALE 266
Query: 185 LGLELFHSMLGKFEVVPIMEHYG-------CVVDLLGRAGLLSEAKEFMRSMP 230
G ++ + I YG ++ + + G L EA++ +P
Sbjct: 267 HGKKVHRYI--------IQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 9/221 (4%)
Query: 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI 97
+ G EA+ + M+ + R + +L CA L + L G++VH IL++ I
Sbjct: 24 KTGRLKEALGIMNTMI--LQGTRVYSDVFRGLLQECARLRS---LEQGREVHAAILKSGI 78
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
+ ++ L+ +Y K G L A RVF S+ +++ +W AMI + + ++ EA ++
Sbjct: 79 QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRA 216
MK G + +++TFV++L A +L++LG ++ ++ E+ P + +V + +
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
G +S+A+ +P E + L+ G VD+ E+
Sbjct: 197 GDISKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALEL 236
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD A L+F+ + R+ VSW ++I G R +A+ +F+ M+ + R
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG--FR 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +Y S+ +C+ + G L GK VH Y++++ L F G L+D+Y K G + A
Sbjct: 260 PSHFSYASLFGACS---STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +DV +WN+++++ A + KEA+ F+EM+ G+R NEI+F++VLTAC+ +
Sbjct: 317 RKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHS 376
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G ++ ++ K +VP HY VVDLLGRAG L+ A F+ MP EP A++ A
Sbjct: 377 GLLDEGWH-YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +L + EL P G +V+L NI+A RWN A +RK M E+G+
Sbjct: 436 LLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 496 KKEPACSWVE 505
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G ++ A +FE M +RD V+WT++I+G+ ++ +A+ F M+
Sbjct: 101 LLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG--YS 158
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SV+ + A E G Q+HG+ ++ +V +G+AL+DLY + G ++ A
Sbjct: 159 PNEFTLSSVIKAAAA---ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF ++ ++ +WNA+I+ A S ++AL +F M G R + ++ ++ AC+
Sbjct: 216 QLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST 275
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + M+ E + + ++D+ ++G + +A++ + + D +
Sbjct: 276 GFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNS 333
Query: 241 LLGACKIHG 249
LL A HG
Sbjct: 334 LLTAYAQHG 342
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L G+ VH +IL++ + MG L+++Y K G LE A +VF+ M +D TW +IS
Sbjct: 76 LIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ + R +AL+ F++M G NE T +V+ A A + G +L H K
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL-HGFCVKCGFDS 194
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
+ ++DL R GL+ +A+ ++ D S + G + G
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G + G +D A +F+ M R++VSW S+I+G+V+ F +A+ VF M V
Sbjct: 170 MVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM--RALGVE 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N S L +C G G L G++++ ++ ++ I + + TA++D+Y K GC++ A
Sbjct: 228 GNGFVATSALVACTG---AGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ + + TWN MI A + R +AL +F +M+ G+ +++T + VLTACA A
Sbjct: 285 WGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHA 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V G + ++ + + P EHYGC+VDL GRAG L EAK+ + MP +PD +VLGA
Sbjct: 345 GEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGA 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIHG VDL +G R+++L P + GRYV+L+N+ AG RW+ +R+ M E +
Sbjct: 405 LLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNV 464
Query: 301 RKIPAYSLIE 310
K S+IE
Sbjct: 465 SKEAGRSVIE 474
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
L V T ++ ++G ++ A VF +M +++ +WN+MIS R +AL +FDE
Sbjct: 161 ALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDE 220
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSM-LGKFEVVPIMEHYGCVVDLLGRA 216
M+ G+ N + L AC A + G E++ + EV + VVD+ +
Sbjct: 221 MRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLA--TAVVDMYCKC 278
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
G + EA S+P + ++G +HG D
Sbjct: 279 GCVDEAWGVFDSLPAR-GLTTWNCMIGGFAVHGRCD 313
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ SA +F+NM K +VVSW +I+G+V+ G + EA+ +F +M V+
Sbjct: 349 LIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VK 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVL +C+ L L GK++H +I+ +++ ++ + AL+D+Y K G ++ A
Sbjct: 407 PDAITFTSVLPACSQL---AVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F + +D +W +MI++ S+ + EAL +F++M++ + +++TF+A+L+AC+ A
Sbjct: 464 LHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHA 523
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-FEPDASVLG 239
LV+ G F+ M+ ++ P +EHY C++DLLGR G L EA E ++ P D +L
Sbjct: 524 GLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLS 583
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
L AC +H +DL ++GR L+E P Y++LSN++A +++W+ +R + E G
Sbjct: 584 TLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELG 643
Query: 300 IRKIPAYSLIE 310
++K P S IE
Sbjct: 644 LKKNPGCSWIE 654
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 142/250 (56%), Gaps = 9/250 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G ++ A +FE + +++VVSW S+I G+ G I +F+ M + +R
Sbjct: 248 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM--DEEGIR 305
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T S+L +C+ VN L LGK +HGYI+RN + +F+ ++LIDLY K G + A
Sbjct: 306 PTLTTLSSILMACSRSVN---LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF++M +V +WN MIS EALV+F +M++ G++ + ITF +VL AC++
Sbjct: 363 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 422
Query: 181 QLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++E G E+ + ++ K E+ ++ G ++D+ + G + EA +P E D
Sbjct: 423 AVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWT 479
Query: 240 ALLGACKIHG 249
+++ A HG
Sbjct: 480 SMIAAYGSHG 489
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K + AI LF+ M +RDV SW ++I+ + ++G +A+ +F+ M V+ +P+
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM--KVSGFKPDSV 208
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +V+SSCA L++ L GK++H ++R+ L F+ +AL+D+YGK GCLE A VF
Sbjct: 209 TLTTVISSCARLLD---LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVF 265
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + K+V +WN+MI+ + K + +F M E+G+R T ++L AC+R+ ++
Sbjct: 266 EQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQ 325
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + H + + V + ++DL + G + A+ ++MP
Sbjct: 326 LG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 9/265 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I+ Y SA L+F+ + D+ W ++ +N F E + VF ++ + +
Sbjct: 44 LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLL-HFPYL 102
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ TY SVL +C+GL G + GK VH +++++ + V + ++ + +Y K E
Sbjct: 103 KPDAFTYPSVLKACSGL---GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI++F M +DV +WN +IS + + ++AL +F+EMK G + + +T V+++CAR
Sbjct: 160 AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCAR 219
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+E G E+ ++ F + + +VD+ G+ G L AKE + +
Sbjct: 220 LLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSW 276
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE 263
+++ + G C E+ RR+ E
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRMDE 301
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 189/309 (61%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+IDGY K+G +D A LF+ M RD++++ S++ G++ +G EA+ +F +M + +R
Sbjct: 312 IIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSM--RRHDLR 369
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V++L++CA L G L G+ +H I + + +++GTAL+D+Y K G ++ A
Sbjct: 370 VDNFTVVNLLTACASL---GALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M +DV TW AMI+ LA N K AL F +M+ G + N ++++AVLTAC+ +
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F M + + P +EHYGC++DLLGR+GLL EA + +++MP +P+A + +
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H +DL LL+L+P G YV L NI+ +W A+ +R M E +
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606
Query: 301 RKIPAYSLI 309
+K YS I
Sbjct: 607 KKTAGYSSI 615
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 37/221 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G K G + LL RDV+SWTS+I + R EA+ FK M+ + +
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG--IA 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T ++VLS+CA L + L LG+ +H + + S + ALID+Y K G A
Sbjct: 237 PDEVTVIAVLSACAKLKD---LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293
Query: 121 IRVFKS--------------------------------MVIKDVCTWNAMISSLASNSRE 148
+VF + M ++D+ T+N+M++ + +
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQL 353
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+EAL++F M+ LR + T V +LTACA ++ G L
Sbjct: 354 REALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCL 117
VRP+ T+ + + L L +H LR + + F+ +LI +Y ++G
Sbjct: 99 VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLA 158
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLAS-------------------------------NS 146
A R F + +KD W +IS LA +
Sbjct: 159 ADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRAN 218
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
R +EA+ F M G+ +E+T +AVL+ACA+ + +ELG L +L + + +P E+
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH--LLVEEKGMPTSENL 276
Query: 207 -GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL-GACKIHGAVDL 253
++D+ + G A++ ++ P A++ G CK HG VD+
Sbjct: 277 VVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCK-HGHVDV 324
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 191/312 (61%), Gaps = 9/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
+I Y K +D A +F N+ R VSW ++I G+ +NG EA+ F M +G
Sbjct: 390 LISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLG---- 445
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++P+ T VSV+ + A L K +HG I+R+ + ++F+ TAL+D+Y K G +
Sbjct: 446 MKPDSFTMVSVIPALAEL---SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F + + V TWNAMI ++ + AL +FD+MK+ + N+IT+++V++AC+
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LV+ GL F SM + + P M+HYG +VDLLGRAG + EA +F+ +MP P +V
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GA+LGACKIH +++ + ++L EL P G +V+L+NI+A +W++ ++RK M +
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682
Query: 299 GIRKIPAYSLIE 310
G++K P S++E
Sbjct: 683 GLKKTPGCSVVE 694
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K +D A +F+ M +RD+VSW +II GF +NG +A+ + M R
Sbjct: 188 VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ--R 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+VL + A + G L +GK +HGY +R V + TAL D+Y K G +E A
Sbjct: 246 PDSITLVTVLPAAADV---GLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETA 302
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M K V +WN+M+ N ++A+ +F++M E+G+ +T + L ACA
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362
Query: 181 QLVELG 186
+E G
Sbjct: 363 GDLERG 368
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ D Y K G +++A L+F+ M ++ VVSW S+++G+V+NG +AI VF+ M+ +
Sbjct: 289 LADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG--ID 346
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T + L +CA L G L GK VH ++ + + + + +LI +Y K ++ A
Sbjct: 347 PTGVTIMEALHACADL---GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F ++ + +WNAMI A N R EAL F EMK G++ + T V+V+ A A
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALA 461
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K G ++ A +FE + + + +++ G+ +N A+ M + V+P
Sbjct: 91 FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM--RYDDVKPVVY 148
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ +L C + L GK++HG ++ N +VF T ++++Y K ++ A ++F
Sbjct: 149 NFTYLLKVCG---DNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMF 205
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ +WN +I+ + N K+AL + M+++G R + IT V VL A A L+
Sbjct: 206 DRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLM 265
Query: 185 LG 186
+G
Sbjct: 266 VG 267
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 187/310 (60%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +D+A+ +F N+ ++VVSWTS+I G N EA+ F+ M ++ +
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM---K 497
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +SVLS+CA + G L GK++H + LR + F+ A++D+Y + G A
Sbjct: 498 PNSVTLISVLSACARI---GALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F S KDV WN +++ A + K A+ +FD+M E + +EITF+++L AC+++
Sbjct: 555 LNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKS 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GLE F+ M K+ + P ++HY CVVD+LGRAG L +A +F++ MP PDA++ GA
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V+L +R+ E K G Y++L N++AG W++ + +R M E G+
Sbjct: 674 LLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGL 733
Query: 301 RKIPAYSLIE 310
P S +E
Sbjct: 734 SADPGCSWVE 743
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 139/243 (57%), Gaps = 6/243 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK GD+ +A +LF+ M KRD +SW ++I+G+ NG E + +F +MM ++ V
Sbjct: 239 LITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF-SMMRELS-VD 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +V S+C L NE LG+ VHGY++++E + M +LI +Y +G LE A
Sbjct: 297 PDLITMTTVASACELLDNE---RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M KDV +W AMI+SL S+ +A+ + M+ +G+ +EIT V+VL+ACA
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG+ L H + K +V + ++D+ + + A E R++ + S
Sbjct: 414 GHLDLGIRL-HEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSL 472
Query: 241 LLG 243
+LG
Sbjct: 473 ILG 475
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 142/269 (52%), Gaps = 17/269 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G ++ A +F M +DVVSWT++I V + +A+ +K M + +
Sbjct: 340 LIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM--ELEGIL 397
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVLS+CA + G L LG ++H ++ +V V + +LID+Y K C++ A
Sbjct: 398 PDEITLVSVLSACACI---GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+++ K+V +W ++I L N+R EAL+ F +MKE ++ N +T ++VL+ACAR
Sbjct: 455 LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARI 513
Query: 181 QLVELGLELF-HSM---LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ G E+ H++ +G +P ++D+ R G A S + D +
Sbjct: 514 GALMRGKEIHAHALRTGVGFDGFLP-----NAILDMYVRCGRKVPALNQFNSQ--KKDVT 566
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQ 265
LL G L E+ ++LEL+
Sbjct: 567 AWNILLTGYAQQGQAKLAVELFDKMLELE 595
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 137/296 (46%), Gaps = 42/296 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+V+ G++ A +F M +RDV SW ++ G+ + GCF EA+ ++ M+ +RPN
Sbjct: 142 FVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE--IRPNVY 199
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ SVL +CAG+ + + GK++H +++R V +G ALI +Y K G + A +F
Sbjct: 200 TFPSVLKTCAGVSD---IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D +WNAMIS N E L +F M+E + + IT V +AC
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316
Query: 185 LG---------------------LELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLL 219
LG L +S LG+ E V ME V A L+
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376
Query: 220 S-----EAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
S +A E + M E PD L ++L AC G +DL G RL E+ K
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL----GIRLHEIAIK 428
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G +V+ + ++ L V +G AL+ ++ + G L A VF M +DV +WN ++ A
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
EAL ++ M +R N TF +VL CA + G E+ H+ + +F ++
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEI-HAHVIRFGFESDVD 234
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ + + G +S A+ MP
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMP 260
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 14/316 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY K G++ SA +F+ M +R+ VSW++++ + R F E + +F M
Sbjct: 182 MVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEG--TE 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE+ V+VL++CA L G L G VH Y R + + + TAL+D+Y K GC+E A
Sbjct: 240 PNESILVTVLTACAHL---GALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF +V KD WNAMIS A N ++L +F +M + NE TFVAVLTAC A
Sbjct: 297 LSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHA 356
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDASV 237
++V+ GL LF M + VVP MEHY CV+DLL RAG++ EA++FM DA+V
Sbjct: 357 KMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANV 416
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH--AGLERWN-RATDLRKA 294
GALL AC+IH + + + V ++L+++ CG +V+ NI+ AG W+ A +R
Sbjct: 417 WGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYREAG---WDVEANKVRSR 473
Query: 295 MVEAGIRKIPAYSLIE 310
+ E G++K P S+IE
Sbjct: 474 IEEVGMKKKPGCSIIE 489
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 40/267 (14%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ++ R+ ++I G+++ A+ + +M+ N V N T+ ++ +C L
Sbjct: 62 IFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNG--VAVNNYTFPPLIKACIAL 119
Query: 77 V-NEGGLYLGKQVHGYI----LRNE-IVLSVF--------------------------MG 104
+ + +G+ VHG++ LRN+ V+S F +G
Sbjct: 120 LPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLG 179
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
TA++D YGK+G ++ A VF M ++ +W+AM+++ + S KE L +F EM+ +G
Sbjct: 180 TAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTE 239
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEA 222
NE V VLTACA + GL + HS +F E PI+ +VD+ + G + A
Sbjct: 240 PNESILVTVLTACAHLGALTQGLWV-HSYARRFHLESNPILA--TALVDMYSKCGCVESA 296
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHG 249
+ + DA A++ ++G
Sbjct: 297 LSVFDCI-VDKDAGAWNAMISGEALNG 322
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 186/311 (59%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+DSA +F M+K+D V+W ++I + +NG EA +F M V
Sbjct: 271 LITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEM--EKTGVS 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VLS+C + G L LGK++ + + ++++ T L+D+YGK G +E A
Sbjct: 329 PDAGTLSTVLSACGSV---GALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEA 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M +K+ TWNAMI++ A KEAL++FD+M + +++TF+ VL+AC A
Sbjct: 386 LRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQMP---VPPSDVTFIGVLSACVHA 442
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G FH M F +VP +EHY ++DLL RAGLL EA EFM P +PD +L A
Sbjct: 443 GLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAA 502
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL-QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LGAC V + + R L+E+ + K+ G YV+ S + A ++ W+ + +R M + G
Sbjct: 503 ILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMRDRG 562
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 563 VVKTPGCSWIE 573
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 128/278 (46%), Gaps = 35/278 (12%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ + R VSW S+I+G+ G +A+ +F+ M P+E
Sbjct: 174 YAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKM--EEEGFEPDER 231
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L +CA L G L G+ + + +I LS F+G+ LI +YGK G L+ A RVF
Sbjct: 232 TLVSMLGACAHL---GDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVF 288
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ KD WNAMI+ + N + EA +F EM++ G+ + T VL+AC +E
Sbjct: 289 NQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 348
Query: 185 LG---------LELFHS---------MLGK----------FEVVPIMEH--YGCVVDLLG 214
LG + L H+ M GK FE +P+ + ++
Sbjct: 349 LGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYA 408
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
G EA MP P +L AC G VD
Sbjct: 409 HQGHAKEALLLFDQMPVPPSDVTFIGVLSACVHAGLVD 446
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 51/308 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF--VRNGCFGEAICVFKNMMGNVNL 58
+I V+ GD + A L + + S+ +I G + N G A+ +++ M +
Sbjct: 68 LIPKAVELGDFNYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHEG-ALSLYRRM--KYSG 124
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++P+ TY V +C G E G+ G+ VH + + + + +LI +Y K G +
Sbjct: 125 LKPDNFTYNFVFIAC-GKREEIGV--GRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVG 181
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF + + +WN+MIS + R K+A+ +F +M+E+G +E T V++L ACA
Sbjct: 182 YARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACA 241
Query: 179 R------AQLVE-------------LGLEL----------------FHSMLGKFEVVPIM 203
+L+E LG +L F+ M+ K V
Sbjct: 242 HLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVA--- 298
Query: 204 EHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260
+ ++ + + G SEA + M PDA L +L AC GA++L +
Sbjct: 299 --WNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETH 356
Query: 261 LLELQPKH 268
E+ +H
Sbjct: 357 ASEISLQH 364
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 189/312 (60%), Gaps = 10/312 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G + A +F M ++++VSW++++ G+ +NG +AI +F+ M
Sbjct: 305 LLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREME------E 358
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + +VL +CAGL + LGK++HG +R +V + +ALIDLYGK GC++ A
Sbjct: 359 KDLYCFGTVLKACAGLA---AVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYA 415
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RV+ M ++++ TWNAM+S+LA N R +EA+ F++M +KG++ + I+F+AVLTAC
Sbjct: 416 SRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHT 475
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M + + P EHY C++DLLGRAGL EA+ + DAS+ G
Sbjct: 476 GLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGV 535
Query: 241 LLGACKIH-GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLG C + A + + +R++EL+PK+ YV+LSN++ + R A +RK MV G
Sbjct: 536 LLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRG 595
Query: 300 IRKIPAYSLIEA 311
+ K S I+A
Sbjct: 596 VAKTVGQSWIDA 607
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 13/227 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y N + A +F+ M + DV+ WT++++ F +N + EA+ +F M LV P+ +
Sbjct: 207 YGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLV-PDGS 265
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL++C L L GK++HG ++ N I +V + ++L+D+YGK G + A +VF
Sbjct: 266 TFGTVLTACGNLRR---LKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVF 322
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K++ +W+A++ N ++A+ MF EM+EK L F VL ACA V
Sbjct: 323 NGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEEKDL----YCFGTVLKACAGLAAVR 378
Query: 185 LGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
LG E+ + G F V I+E ++DL G++G + A M
Sbjct: 379 LGKEIHGQYVRRGCFGNV-IVE--SALIDLYGKSGCIDYASRVYSKM 422
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 16/248 (6%)
Query: 5 YVKNG-DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y K G DM +F+ M +D +SWTS+++G+V + +A+ VF M+ ++PN+
Sbjct: 105 YFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFG--LQPNK 162
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T S + +C L G + LG+ HG ++ + + + + L +YG A RV
Sbjct: 163 FTLSSAVKACFEL---GEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRV 219
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQL 182
F M DV W A++S+ + N +EAL +F M + KGL + TF VLTAC +
Sbjct: 220 FDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRR 279
Query: 183 VELGLELFHSM----LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ G E+ + +G VV ++D+ G++G + EA++ MP + S
Sbjct: 280 LKQGKEIHGKLITNGIGSNVVVE-----SSLLDMYGKSGSVREARQVFNGMPRKNIVSWS 334
Query: 239 GALLGACK 246
L G C+
Sbjct: 335 ALLGGYCQ 342
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVF 124
Y S+L +C + + G Q H +++++ + +G +L+ LY K+G + RVF
Sbjct: 63 YASLLQTCRKVFS---FIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVF 119
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +KD +W +M+S ++ +AL +F EM GL+ N+ T + + AC V
Sbjct: 120 DGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVR 179
Query: 185 LGLELFHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
LG FH ++ FE ++ + + G +A+ MP EPD A+L
Sbjct: 180 LG-RCFHGVVITHGFEWNHVIS--STLAYMYGVNKEPVDARRVFDEMP-EPDVICWTAVL 235
Query: 243 GA 244
A
Sbjct: 236 SA 237
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 187/310 (60%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K +D+A+ +F N+ ++VVSWTS+I G N EA+ F+ M ++ +
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM---K 497
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T +SVLS+CA + G L GK++H + LR + F+ A++D+Y + G A
Sbjct: 498 PNSVTLISVLSACARI---GALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F S KDV WN +++ A + K A+ +FD+M E + +EITF+++L AC+++
Sbjct: 555 LNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKS 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GLE F+ M K+ + P ++HY CVVD+LGRAG L +A +F++ MP PDA++ GA
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH V+L +R+ E K G Y++L N++AG W++ + +R M E G+
Sbjct: 674 LLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGL 733
Query: 301 RKIPAYSLIE 310
P S +E
Sbjct: 734 SADPGCSWVE 743
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 139/243 (57%), Gaps = 6/243 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK GD+ +A +LF+ M KRD +SW ++I+G+ NG E + +F +MM ++ V
Sbjct: 239 LITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELF-SMMRELS-VD 296
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +V S+C L NE LG+ VHGY++++E + M +LI +Y +G LE A
Sbjct: 297 PDLITMTTVASACELLDNE---RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M KDV +W AMI+SL S+ +A+ + M+ +G+ +EIT V+VL+ACA
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++LG+ L H + K +V + ++D+ + + A E R++ + S
Sbjct: 414 GHLDLGIRL-HEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSL 472
Query: 241 LLG 243
+LG
Sbjct: 473 ILG 475
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 142/269 (52%), Gaps = 17/269 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G ++ A +F M +DVVSWT++I V + +A+ +K M + +
Sbjct: 340 LIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMM--ELEGIL 397
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVLS+CA + G L LG ++H ++ +V V + +LID+Y K C++ A
Sbjct: 398 PDEITLVSVLSACACI---GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNA 454
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+++ K+V +W ++I L N+R EAL+ F +MKE ++ N +T ++VL+ACAR
Sbjct: 455 LEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARI 513
Query: 181 QLVELGLELF-HSM---LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+ G E+ H++ +G +P ++D+ R G A S + D +
Sbjct: 514 GALMRGKEIHAHALRTGVGFDGFLP-----NAILDMYVRCGRKVPALNQFNSQ--KKDVT 566
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQ 265
LL G L E+ ++LEL+
Sbjct: 567 AWNILLTGYAQQGQAKLAVELFDKMLELE 595
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 137/296 (46%), Gaps = 42/296 (14%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+V+ G++ A +F M +RDV SW ++ G+ + GCF EA+ ++ M+ +RPN
Sbjct: 142 FVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE--IRPNVY 199
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ SVL +CAG+ + + GK++H +++R V +G ALI +Y K G + A +F
Sbjct: 200 TFPSVLKTCAGVSD---IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D +WNAMIS N E L +F M+E + + IT V +AC
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316
Query: 185 LG---------------------LELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLL 219
LG L +S LG+ E V ME V A L+
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376
Query: 220 S-----EAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
S +A E + M E PD L ++L AC G +DL G RL E+ K
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL----GIRLHEIAIK 428
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G +V+ + ++ L V +G AL+ ++ + G L A VF M +DV +WN ++ A
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
EAL ++ M +R N TF +VL CA + G E+ H+ + +F ++
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEI-HAHVIRFGFESDVD 234
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ + + G +S A+ MP
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMP 260
>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
gi|219885333|gb|ACL53041.1| unknown [Zea mays]
gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
Length = 528
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+ +A LF+ M +D+ +W ++I+ + +NGC EA+ +F M+ V
Sbjct: 220 MISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVV 279
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ SV+S+C+ L G L G V ++ + L + TAL+DLY K G ++RA
Sbjct: 280 PNEKTFSSVISACSQL---GDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRA 336
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + +DV +++AMI + + EA+ +F EM + + N +TFV +L+A + A
Sbjct: 337 FDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHA 396
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E F SM ++ + P MEHY +VD+LGR G L EA + + +P PDASV GA
Sbjct: 397 GLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGA 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H ++L V + EL+P+ G Y++L NI+A ++W++ LRK M E G+
Sbjct: 457 LLLACRLHNNIELGEVVASKCFELEPQESGYYILLGNIYAQAKKWDKVKGLRKMMAERGL 516
Query: 301 RKIPAYSLIE 310
K P S +
Sbjct: 517 SKTPGSSWVH 526
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
+ GD+ +A +FE M RDVVSW S++ G + G EAI +F M N A++
Sbjct: 133 RAGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQM------PETNVASW 186
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+++S G + +G L +++ + RN + +I Y K G ++ A +F
Sbjct: 187 NALVS---GFMAQGHLAQAQELFERMPTRNNVSW-----ITMISGYAKAGDVQAAANLFD 238
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--ANEITFVAVLTACARAQLV 183
M KD+ WNAMIS A N +EAL +F+ M + + NE TF +V++AC +QL
Sbjct: 239 RMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISAC--SQLG 296
Query: 184 ELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
+L L+ + V + +H +VDL ++G + A + R + D A++
Sbjct: 297 DLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSR-DVVSYSAMI 355
Query: 243 GACKIHGAVD 252
C +HG ++
Sbjct: 356 VGCGMHGKLN 365
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 66/233 (28%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
WT I G AI ++ + + RP +VL S L L
Sbjct: 13 PWTLAIRAAADQGRPRRAIALYLASLRSS--CRPCPFALAAVLKSVPRLPEHAVLPAAAS 70
Query: 88 VHGYILRNEIVLSVFMGTALIDLYG----------------------------------- 112
+H ++LR ++ + AL LY
Sbjct: 71 LHAHLLRLGLLSHPYPHAALSHLYSHLLPPHHNHARGLLDDAPTPLNRHSLVSSNSLLAS 130
Query: 113 --KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA----- 165
+ G + A +F++M +DV +WN+M++ LA EA+ MFD+M E + +
Sbjct: 131 LLRAGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALV 190
Query: 166 ----------------------NEITFVAVLTACARAQLVELGLELFHSMLGK 196
N ++++ +++ A+A V+ LF M K
Sbjct: 191 SGFMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSK 243
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 181/316 (57%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K+ ++ A +F M++++VV+W +I + N EA+ +F + V
Sbjct: 321 MITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRL--KRESVW 378
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P TY +VL++CA L N L LG+Q H ++L+ VF+G +L+D+Y K
Sbjct: 379 PTHYTYGNVLNACANLAN---LQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKT 435
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G + +VF+ M +D +WNAMI A N R K+AL++F+ M R + +T + VL
Sbjct: 436 GSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVL 495
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC + LV+ G F SM ++P +HY C++DLLGRAG L E +E + +MP EPD
Sbjct: 496 SACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPD 555
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A + +LLGAC++H +D+ +L EL P + G YV+LSN++A L +W +R++
Sbjct: 556 AVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRS 615
Query: 295 MVEAGIRKIPAYSLIE 310
M G+ K P S IE
Sbjct: 616 MKHRGVSKQPGCSWIE 631
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 43/265 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +F+ M +R++VSW S+I + +NG EA+ +F MM + +
Sbjct: 188 LVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFV-- 245
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVG---- 115
P+E T SV+S+CAGL G+QVH +++++ + + AL+D+Y K G
Sbjct: 246 PDEVTLASVMSACAGL---AAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWE 302
Query: 116 ---CLER-AIR-----------------------VFKSMVIKDVCTWNAMISSLASNSRE 148
+R AIR VF MV K+V WN +I++ A NS E
Sbjct: 303 AKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEE 362
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEH 205
+EAL +F +K + + T+ VL ACA ++LG + +L +F+ P +
Sbjct: 363 EEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDV 422
Query: 206 Y--GCVVDLLGRAGLLSE-AKEFMR 227
+ +VD+ + G +S+ AK F R
Sbjct: 423 FVGNSLVDMYLKTGSISDGAKVFER 447
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 5/215 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G D A+ LF + D S+ +++ ++G G+A+ M + ++ N ++ S
Sbjct: 95 GRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVL--NAYSFAS 152
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
LS+CA +E G+QVH + ++ V++GTAL+D+Y K E A +VF +M
Sbjct: 153 ALSACA---SEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP 209
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+++ +WN++I+ N EAL +F M + G +E+T +V++ACA G +
Sbjct: 210 ERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQ 269
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ M+ M +VD+ + G EAK
Sbjct: 270 VHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAK 304
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 68 SVLSSCAGLVNEGGLYLGKQV-HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
++LS+ A L G L+ ++V G RN F AL+ ++G + A+ +F +
Sbjct: 55 TLLSAYARL---GSLHDARRVFDGMPHRN-----TFSYNALLSACARLGRADDALALFGA 106
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
+ D C++NA++++LA + R +AL M N +F + L+ACA + G
Sbjct: 107 IPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTG 166
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
E H+++ K + +VD+ + EA++ +MP E + +L+ +
Sbjct: 167 -EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLITCYE 224
Query: 247 IHGAVD 252
+G VD
Sbjct: 225 QNGPVD 230
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 189/314 (60%), Gaps = 9/314 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G++ A LF+ M +RDVVSWT++I+G+ GCF EA+ +F + G ++
Sbjct: 295 LVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLG--MK 352
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG--TALIDLYGKVGCLE 118
P+E V+ LS+CA L G L LG+++H S+ G +A++D+Y K G ++
Sbjct: 353 PDEVAVVAALSACARL---GALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSID 409
Query: 119 RAIRVFK--SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
A+ VF+ S K +N++IS LA + R + A +F+EM GL+ + ITFVAVL+A
Sbjct: 410 IALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSA 469
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C LV+ G +LF SM + V P MEHYGC+VDLLGRAG L EA + MPF+ +A
Sbjct: 470 CGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAV 529
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ ALL ACK+HG V L L+ELQ H YV+LSN+ + ++ + A LRKA+
Sbjct: 530 IWRALLSACKVHGDVALARVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAID 589
Query: 297 EAGIRKIPAYSLIE 310
GI+K P +S +E
Sbjct: 590 NVGIQKPPGWSYVE 603
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 150/324 (46%), Gaps = 49/324 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y GD+ +A +F+ RD VS+ ++INGF R G VF M G VR
Sbjct: 159 LLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVC--VR 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN------------------------- 95
P+E T+V++LS C+ L + +G+QVHG + R
Sbjct: 217 PDEYTFVALLSGCSVLED---YRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLV 273
Query: 96 --EIVLSVFMG--------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
E VLSV T+L+ Y G ++ A R+F M +DV +W AMIS +
Sbjct: 274 MAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHA 333
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+EAL +F +++ G++ +E+ VA L+ACAR +ELG + G+ I
Sbjct: 334 GCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRG 393
Query: 206 Y-GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-GALLGACKIHG----AVDLCHEVGR 259
+ VVD+ + G + A + R + + L +++ HG A +L E+G
Sbjct: 394 FTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMG- 452
Query: 260 RLLELQPKHCGRYVVLSNI-HAGL 282
LL L+P + VLS H GL
Sbjct: 453 -LLGLKPDNITFVAVLSACGHCGL 475
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 22/256 (8%)
Query: 17 LFENMLKRDVVSWTSIINGFVR-NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
LF + D+ W +II + + + +FK M+ + V P+ T+ +L +CA
Sbjct: 71 LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSS--VLPDSFTFPFLLKACAN 128
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
++ + G QVH ++LRN VF+ AL++ Y G + A +VF ++D ++
Sbjct: 129 VLISAPQF-GFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSF 187
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE---LFHS 192
N MI+ A +F EM+ +R +E TFVA+L+ C+ + +G + L +
Sbjct: 188 NTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYR 247
Query: 193 MLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA---LLGACKI 247
LG F V+ + + +VD+ + G L A+ + + +P SV+ A L+ A +
Sbjct: 248 ELGCFGGNVLLVNK----LVDMYAKCGRLVMAETVLSVV--KPGKSVVAAWTSLVSAYAL 301
Query: 248 HGAVDLCHEVGRRLLE 263
G V +V RRL +
Sbjct: 302 RGEV----KVARRLFD 313
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 183/311 (58%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY KNGDMD A +LF+ +++V WT+II+G+ G EA+ + M + +R
Sbjct: 258 MVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEM--EKSGLR 315
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ ++S+L++CA G L LGK++H LR+ S + + ID+Y K GC++ A
Sbjct: 316 LDDGFFISILAACA---ESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDA 372
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF M KD+ +WN+MI + ++++ +F+ M +G + + TF+ +L AC
Sbjct: 373 FRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTH 432
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G F+SM + +VP +EHYGC+VDLLGR G L EA +RSMPFEP+A +LG
Sbjct: 433 AGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILG 492
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V L V + L +L P G + +LSNI+A W +RK M + G
Sbjct: 493 TLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEG 552
Query: 300 IRKIPAYSLIE 310
+K S IE
Sbjct: 553 GQKPSGVSSIE 563
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 7/194 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG-NVNLV 59
+I Y ++ SA+ +F + +V + +I + +G ++C F ++ +V+ V
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ TY +L C G + L L K VH ++ + +F+ +LID Y + G +E
Sbjct: 120 LADNFTYPFLLKGCNG--SSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEM 177
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A++VF M +DV +WN+M+ L N AL +FDEM E+ + +++ +L +
Sbjct: 178 AMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPER----DRVSWNTMLDGFTK 233
Query: 180 AQLVELGLELFHSM 193
A ++ +LF M
Sbjct: 234 AGEMDKAFKLFERM 247
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 186/310 (60%), Gaps = 21/310 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDG ++NG++ AI+LF+ M +RD +SWTS+I GFV+ GCF +A+ F+ M + V
Sbjct: 164 MIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREM--QLAGVE 221
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +SVL++CA L G L LG ++ ++++ + ++ + +LID+Y + GC+ A
Sbjct: 222 PDYVTIISVLAACANL---GALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLA 278
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF+ M + + +WN+MI A N +EAL F+ M+++G +
Sbjct: 279 RQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEG----------------HS 322
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL+ F M ++ P +EHYGC+VDL RAG L +A + +MP +P+ VLG+
Sbjct: 323 GLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGS 382
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V L + + L E+ P YV+LSNI+A + RW+ A+ +RK M GI
Sbjct: 383 LLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGI 442
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 443 HKKPGFSSIE 452
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
+VSWTS I RNG EA F M + VRPN T++++LS+C EG L G
Sbjct: 54 IVSWTSSIALHCRNGQLPEAAAEFSRM--QIAGVRPNHITFLTLLSACTDFPLEG-LRFG 110
Query: 86 KQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+H Y+ + + +V +GTAL+D+Y K G L+ A +F M +++ +WN MI
Sbjct: 111 GSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMR 170
Query: 145 NSREKEALVMFDEMKEK-------------------------------GLRANEITFVAV 173
N EA+V+FD+M E+ G+ + +T ++V
Sbjct: 171 NGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISV 230
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
L ACA + LGL + + + K + ++ ++D+ R G + A++ MP
Sbjct: 231 LAACANLGALGLGLWI-NRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
I + +W + I+ N + EA F M+ G+R N ITF+ +L+AC L
Sbjct: 51 IDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL 104
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + GD+ +A ++F+ M VVS+ ++I VR+ GEA+ +F+ M ++
Sbjct: 179 LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLK 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T +SVLS+CA L G L LG+ +H YI + + V + TALID+Y K G LE A
Sbjct: 237 PTSVTLISVLSACALL---GALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M +D W+ M+ + A++ +EA+ MF+EMK++G++ +++TF+ VL AC+ +
Sbjct: 294 IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GL+ F SM ++ +V ++HYGCV DLL R+G L A +F+ +P +P A +
Sbjct: 354 GMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRT 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG VD+ V R+LEL H G YV+ SN+ A RW +RK M E G+
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGV 472
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 473 VKVPGCSSIE 482
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 10/202 (4%)
Query: 25 DVVSWTSIINGFVRNG----CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
DVV + +++ G+ R G C EA VF MM V P+ T+VS+L +CA +
Sbjct: 98 DVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEG--VAPDTYTFVSLLKACA---SAR 152
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
G+Q HG ++ ++ LI++Y + G + A +F M + V ++NAMI+
Sbjct: 153 AGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMIT 212
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
+ +S EALV+F EM+ KGL+ +T ++VL+ACA +ELG H + K +
Sbjct: 213 ASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDYIRKMRLD 271
Query: 201 PIMEHYGCVVDLLGRAGLLSEA 222
+++ ++D+ + G L +A
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDA 293
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + GD+ +A ++F+ M VVS+ ++I VR+ GEA+ +F+ M ++
Sbjct: 179 LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLK 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T +SVLS+CA L G L LG+ +H YI + + V + TALID+Y K G LE A
Sbjct: 237 PTSVTLISVLSACALL---GALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M +D W+ M+ + A++ +EA+ MF+EMK++G++ +++TF+ VL AC+ +
Sbjct: 294 IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GL+ F SM ++ +V ++HYGCV DLL R+G L A +F+ +P +P A +
Sbjct: 354 GMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRT 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG VD+ V R+LEL H G YV+ SN+ A RW +RK M E G+
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGV 472
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 473 VKVPGCSSIE 482
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ T+VS+L +CA + G+Q HG ++ ++ LI++Y + G +
Sbjct: 134 VAPDTYTFVSLLKACA---SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVR 190
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M + V ++NAMI++ +S EALV+F EM+ KGL+ +T ++VL+ACA
Sbjct: 191 AARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACA 250
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ELG H + K + +++ ++D+ + G L +A
Sbjct: 251 LLGALELG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + GD+ +A ++F+ M VVS+ ++I VR+ GEA+ +F+ M ++
Sbjct: 179 LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREM--QAKGLK 236
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T +SVLS+CA L G L LG+ +H YI + + V + TALID+Y K G LE A
Sbjct: 237 PTSVTLISVLSACALL---GALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ M +D W+ M+ + A++ +EA+ MF+EMK++G++ +++TF+ VL AC+ +
Sbjct: 294 IGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V GL+ F SM ++ +V ++HYGCV DLL R+G L A +F+ +P +P A +
Sbjct: 354 GMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRT 412
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG VD+ V R+LEL H G YV+ SN+ A RW +RK M E G+
Sbjct: 413 LLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGV 472
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 473 VKVPGCSSIE 482
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+ T+VS+L +CA + G+Q HG ++ ++ LI++Y + G +
Sbjct: 134 VAPDTYTFVSLLKACA---SARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVR 190
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F M + V ++NAMI++ +S EALV+F EM+ KGL+ +T ++VL+ACA
Sbjct: 191 AARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACA 250
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ELG H + K + +++ ++D+ + G L +A
Sbjct: 251 LLGALELG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDA 293
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 184/331 (55%), Gaps = 24/331 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV- 59
++D Y + G MD + +F++M RD VSW ++I G+V +G + A+ + M N
Sbjct: 441 LMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKD 500
Query: 60 --------------RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105
+PN T ++VL CA L + GK++H Y +RN + + +G+
Sbjct: 501 VKKDDNDDEKGGPYKPNAITLMTVLPGCAAL---AAIAKGKEIHAYAIRNMLASDITVGS 557
Query: 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKG-- 162
AL+D+Y K GCL + RVF M K+V TWN +I + + + +EAL +F M E G
Sbjct: 558 ALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRG 617
Query: 163 --LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220
+ NE+TF+ V AC+ + L+ GL LF+ M V P +HY CVVDLLGRAG L
Sbjct: 618 GEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLE 677
Query: 221 EAKEFMRSMPFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279
EA E + +MP E D +LLGAC+IH V+L + LL L+P YV+LSNI+
Sbjct: 678 EAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIY 737
Query: 280 AGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ WN+A ++RK M + G++K P S IE
Sbjct: 738 SSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 13/261 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +D + LFE+ + RD+VSW ++I+ F ++ F EA+ F+ M+ + V +
Sbjct: 241 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV--LEGVELDGV 298
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLERAIRV 123
T SVL +C+ L L +GK++H Y+LRN +++ + F+G+AL+D+Y +E RV
Sbjct: 299 TIASVLPACSHLER---LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRV 355
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQL 182
F ++ + + WNAMIS A N +++AL++F EM K GL N T +V+ AC +
Sbjct: 356 FDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEA 415
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS----VL 238
E H K ++D+ R G + ++ SM S +
Sbjct: 416 FS-NKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474
Query: 239 GALLGACKIHGAVDLCHEVGR 259
G +L + A+ L HE+ R
Sbjct: 475 GYVLSG-RYSNALVLLHEMQR 494
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 5/190 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+++ Y K G + +F+ + RD VSW S I R + +A+ F+ M M N+ L
Sbjct: 134 LVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMEL- 192
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ T VSV +C+ L GL LGKQ+HGY LR F AL+ +Y K+G ++
Sbjct: 193 --SSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGD-QKTFTNNALMAMYAKLGRVDD 249
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ +F+S V +D+ +WN MISS + + R EAL F M +G+ + +T +VL AC+
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309
Query: 180 AQLVELGLEL 189
+ +++G E+
Sbjct: 310 LERLDVGKEI 319
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 23/266 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y ++S +F+++L R + W ++I+G+ RNG +A+ +F M+ L+
Sbjct: 339 LVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLL- 397
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T SV+ +C V+ + +HGY ++ ++ AL+D+Y ++G ++ +
Sbjct: 398 PNTTTMASVMPAC---VHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDIS 454
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-----------------KGL 163
+F SM ++D +WN MI+ + R ALV+ EM+
Sbjct: 455 ETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPY 514
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ N IT + VL CA + G E+ H+ + + + +VD+ + G L+ ++
Sbjct: 515 KPNAITLMTVLPGCAALAAIAKGKEI-HAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 573
Query: 224 EFMRSMPFEPDASVLGALLGACKIHG 249
MP + L+ AC +HG
Sbjct: 574 RVFNEMP-NKNVITWNVLIMACGMHG 598
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
R SW + R+ F EAI + M V+ RP+ + +VL + +GL + L
Sbjct: 55 RSTASWVDALRSRTRSNDFREAISTYIEM--TVSGARPDNFAFPAVLKAVSGLQD---LK 109
Query: 84 LGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
G+Q+H ++ SV + L+++YGK G + +VF + +D +WN+ I++L
Sbjct: 110 TGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAAL 169
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+ ++AL F M+ + + + T V+V AC+
Sbjct: 170 CRFEKWEQALEAFRAMQMENMELSSFTLVSVALACS 205
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 187/315 (59%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD-----VVSWTSIINGFVRNGCFGEAICVFKNMMGN 55
+ID Y G M+ A +F+ ML RD VVSW S+I G ++G GEA+ +F+ M +
Sbjct: 148 IIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDH 207
Query: 56 VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKV 114
P++AT V++L CA L G + +G+ +H Y + ++ + +G +L+D Y K
Sbjct: 208 G--FEPDDATVVTILPVCARL---GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKC 262
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G LE A RVF M K+V +WNAMIS L N + + +F+EM KG+R N+ TFV VL
Sbjct: 263 GILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVL 322
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+ CA A LVE G LF SM ++ P +EH+GC+VDLL R G + EA++ +R+MP P+
Sbjct: 323 SCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPN 382
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
A + G+LL A + G V + L+EL+P + G YV+LSN++A +W+ +R
Sbjct: 383 AVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRAL 442
Query: 295 MVEAGIRKIPAYSLI 309
M E IRK P S++
Sbjct: 443 MKEKNIRKNPGQSMV 457
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 12/226 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M A L+F +++ + S+I G+ G ++ +F M + P+E T+ +L
Sbjct: 57 MGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRG--IWPDEFTFAPLL 114
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
SC+G+ + + G ++ E S+ +G +IDLY G +E A +VF M+ +
Sbjct: 115 KSCSGIC-DNRIGKGVHGVVIVVGFERFSSIRIG--IIDLYTSCGRMEDAKKVFDEMLDR 171
Query: 131 D-----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
D V +WN+MI+ L + R+ EAL +F EM + G ++ T V +L CAR V++
Sbjct: 172 DMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDV 231
Query: 186 GLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMP 230
G E HS ++ G +VD + G+L A MP
Sbjct: 232 G-EWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMP 276
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 38/205 (18%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +ILR+ + S + + I + G + + A VF ++ +N+MI +
Sbjct: 27 QIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCG 86
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACA---------------------RAQLVEL 185
+ +L++F +MK +G+ +E TF +L +C+ R + +
Sbjct: 87 PSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRI 146
Query: 186 GL--------------ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-- 229
G+ ++F ML + + + ++ L ++G EA E R M
Sbjct: 147 GIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWD 206
Query: 230 -PFEPDASVLGALLGACKIHGAVDL 253
FEPD + + +L C GAVD+
Sbjct: 207 HGFEPDDATVVTILPVCARLGAVDV 231
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 187/311 (60%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK + +F+ + ++D+VSWTSII G V+ E + +F ++ + +
Sbjct: 182 LMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSG--IE 239
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ SVLS+ A + G L G+ V YI I + +GTA++D+Y K GC+E A
Sbjct: 240 PDGIILTSVLSARA---SPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMA 296
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F M K+V TWNAM++ LA + ++AL +F+EM +G+R NE+TF+ LTAC
Sbjct: 297 MQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHC 356
Query: 181 QLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V G FH M ++ + P +EHYGC+VDLL RAGLL EA E ++MP PD ++G
Sbjct: 357 GFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRIMG 416
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL CK +G V+L E+ RL+E + G YV+LSNI A +RW T +R+ M + G
Sbjct: 417 ALLSTCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLM-KMG 475
Query: 300 IRKIPAYSLIE 310
I K P S+IE
Sbjct: 476 IEKTPGSSVIE 486
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 52/256 (20%)
Query: 3 DGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM 53
D YV+N G +D A +F+ ML RD VSWT +I ++
Sbjct: 110 DIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYPGIK--------------- 154
Query: 54 GNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113
G L LGK +HG I+ L + + AL+D+Y K
Sbjct: 155 --------------------------GYLILGKGIHGLIIERGFGLGLEVSNALMDMYVK 188
Query: 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173
L +VF + KD+ +W ++I + KE L +F +++ G+ + I +V
Sbjct: 189 CESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSV 248
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L+A A ++ G L + + ++ VVD+ + G + A + MP +
Sbjct: 249 LSARASPGALDYG-RLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHK- 306
Query: 234 DASVLGALLGACKIHG 249
+ A+L +HG
Sbjct: 307 NVLTWNAMLNGLAMHG 322
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 36 FVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL--VNEGGLYLGKQVHGYIL 93
F + F + C F + M + L P T+ +VL SCA V+EG +QVHG I
Sbjct: 51 FAKGPNFADYACDFLSQMEDGFL--PYMFTFPAVLKSCAKFMAVDEG-----RQVHGVIA 103
Query: 94 RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
+ + V +++ +L+ Y G L+ A RVF M+++D +W +I
Sbjct: 104 KMDFVCDIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVI 149
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K GD+D+A LF++M +++VSW ++I G+ N +GEA+ F+ MM R
Sbjct: 274 MVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRF-R 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VSV+S+CA L G + + +I ++ + L++ +G ALID++ K G + RA
Sbjct: 333 PDEATLVSVVSACAQL---GSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRA 389
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + + TW MIS A N +EAL++++ M +G+ +++ F+A L AC
Sbjct: 390 QSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHG 449
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G +F+ M+ ++ + P MEHYGCVVDLLGRAG L EA F+ SMP EP +
Sbjct: 450 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWAT 509
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C HG + V +++ EL+P + V++SN A RW+ R M GI
Sbjct: 510 LLSSCVAHGNAEFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGI 569
Query: 301 RKIPAYSLIE 310
K+P S I+
Sbjct: 570 EKVPGSSSIQ 579
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y+ +GD A+ LFE M +R+VVSW +++ GF R G A VF M
Sbjct: 180 IIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSR----- 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N ++ ++S G + G + + + + + + V+S TA++ Y K+G L+ A
Sbjct: 235 -NAISWNLMIS---GYASSGDVEAARSMFDRMDQKKDVVS---WTAMVSAYAKIGDLDTA 287
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F M +K++ +WNAMI+ NSR EAL F M +G R +E T V+V++ACA+
Sbjct: 288 KELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQ 347
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
VE S + K V + ++D+ + G + A+ M
Sbjct: 348 LGSVEY-CNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEM 396
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 103/264 (39%), Gaps = 72/264 (27%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY---GKVG 115
V PN T+ +L +CA L G + VHG I+R VF+ L+D+Y G G
Sbjct: 101 VPPNGFTFTFLLRACALL---GFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPG 157
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA---------- 165
+ A +VF MV +DV +WN++I S+ A+ +F+ M E+ + +
Sbjct: 158 RVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFAR 217
Query: 166 -----------------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
N I++ +++ A + VE +F M K +VV +
Sbjct: 218 VGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVV----SWTA 273
Query: 209 VVDLLGRAGLLSEAKEFMRSMP-----------------------------------FEP 233
+V + G L AKE MP F P
Sbjct: 274 MVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRP 333
Query: 234 DASVLGALLGACKIHGAVDLCHEV 257
D + L +++ AC G+V+ C+ +
Sbjct: 334 DEATLVSVVSACAQLGSVEYCNWI 357
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 186/310 (60%), Gaps = 9/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y + GD+ SA LF+ M +RD VSW S+I G+ +NG +AI +F+ M+ + + +
Sbjct: 343 MISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSED-SK 401
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSV S+C L G L LG + N I +S+ + +LI +Y + G ++ A
Sbjct: 402 PDEVTMVSVFSACGHL---GELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDA 458
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M +D+ ++N +IS A + E++ + +MKE G+ + IT++A+LTAC+ A
Sbjct: 459 VLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHA 518
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G LF S+ KF P ++HY C++D+LGRAG L EA + ++SMP EP A + G+
Sbjct: 519 GLLGEGQRLFESI--KF---PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGS 573
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL A IH V+L +L +++P + G YV+LSNI+A RW +R M + G+
Sbjct: 574 LLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGV 633
Query: 301 RKIPAYSLIE 310
+K S +E
Sbjct: 634 KKTTGLSWLE 643
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 47/261 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ K G++ +A + F+ M +R VVSW ++++G+ + G E I +F +M+ N V+
Sbjct: 206 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGN-VQ 264
Query: 61 PNEATYVSVLSSCAGLVN-------------------------------------EGGLY 83
P+E T+V+V+SSC+ L + E
Sbjct: 265 PDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHK 324
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
+ +Q+ Y R+ + + A+I Y +VG L A +F M +D +WN+MI+
Sbjct: 325 IFEQLGVYKYRSSVPWN-----AMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYT 379
Query: 144 SNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFH-SMLGKFEVVP 201
N +A+ +F+EM + + +E+T V+V +AC L ELGL + S+L + +
Sbjct: 380 QNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSAC--GHLGELGLGNWAVSILKENHIQI 437
Query: 202 IMEHYGCVVDLLGRAGLLSEA 222
+ Y ++ + R G + +A
Sbjct: 438 SISVYNSLISMYSRCGSMQDA 458
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 19/250 (7%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGE-AICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75
+F DV +T ++ + + G + + +FK+M+ + N ++PN + Y SV+ AG
Sbjct: 58 IFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCN-IKPNTSFY-SVMMKSAG 115
Query: 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW 135
+E L+L ++L++ ++ ++ +Y K G +E A ++F M + V W
Sbjct: 116 --SESMLFLA-----HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADW 168
Query: 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
N MIS E+EA +F M ++ + N IT+ ++T A+ ++ F M
Sbjct: 169 NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 228
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAV 251
+ V + ++ + G E M +PD + ++ +C G
Sbjct: 229 RSVVS-----WNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDP 283
Query: 252 DLCHEVGRRL 261
L + R+L
Sbjct: 284 CLSESIVRKL 293
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 41/175 (23%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A LF+ M R V W +I+G+ + G EA +F ++MG+
Sbjct: 144 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLF-HVMGD--------- 193
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
EI +V T +I + K G L+ A F
Sbjct: 194 ------------------------------QEISRNVITWTTMITGHAKKGNLKTARMYF 223
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
M + V +WNAM+S A +E + +F++M G ++ +E T+V V+++C+
Sbjct: 224 DKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCS 278
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ ++ + +F + RD +SW S++ G+V+NG + EA+ +F+ M+ V+
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV--TAKVK 340
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SV+ +CA L L+LGKQ+HGY+LR ++F+ +AL+D+Y K G ++ A
Sbjct: 341 PGAVAFSSVIPACAHLAT---LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA 397
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + D +W A+I A + EA+ +F+EMK +G++ N++ FVAVLTAC+
Sbjct: 398 RKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 457
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ F+SM + + +EHY V DLLGRAG L EA F+ M EP SV
Sbjct: 458 GLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWST 517
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C +H ++L +V ++ + ++ G YV++ N++A RW LR M + G+
Sbjct: 518 LLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 578 RKKPACSWIE 587
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 150/290 (51%), Gaps = 16/290 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+DS +FE M ++DVVS+ +II G+ ++G + +A+ + + M G +L +P+ T SVL
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDL-KPDSFTLSSVL 249
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ V+ + GK++HGY++R I V++G++L+D+Y K +E + RVF + +
Sbjct: 250 PIFSEYVD---VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
D +WN++++ N R EAL +F +M ++ + F +V+ ACA + LG +L
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366
Query: 191 HSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG-ACKIH 248
+L G F + +VD+ + G + A++ M + S ++G A H
Sbjct: 367 GYVLRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 424
Query: 249 G--AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--ERWNRATDLRK 293
G AV L E+ R+ ++P VL+ H GL E W + K
Sbjct: 425 GHEAVSLFEEMKRQ--GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 472
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + V++W S+I F F +A+ F M + P+ + SVL SC ++
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC--PDHNVFPSVLKSCTMMM 119
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV----------------------- 114
+ L G+ VHG+I+R + ++ G AL+++Y K+
Sbjct: 120 D---LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNS 176
Query: 115 --------GC-----LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
C ++ RVF+ M KDV ++N +I+ A + ++AL M EM
Sbjct: 177 GDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTT 236
Query: 162 GLRANEITFVAVL 174
L+ + T +VL
Sbjct: 237 DLKPDSFTLSSVL 249
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
KQ+H +R + LS + +I +Y + L A+ +FK++ V W ++I
Sbjct: 24 AKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
S +AL F EM+ G + F +VL +C
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G +D A ++F+ M + VV+W S+I+G +NG +AI +F M V
Sbjct: 443 LINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMY--VTCPE 500
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +VSV+ +C+ L G L GK +H ++ + +F+ TAL+D+Y K G L+ A
Sbjct: 501 IGEVAFVSVIQACSHL---GFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTA 557
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +M + V +W+++ISS + + E + +F +M E G++ N++T + VL+AC+ A
Sbjct: 558 QRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHA 617
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F+SM F + P EH+ C+VDLL RAG L EA E ++ MPF P AS+ GA
Sbjct: 618 GCVKEGMLFFNSMR-DFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGA 676
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH +D+ + R L +Q G Y +LSNI+A WN ++R M G+
Sbjct: 677 LLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGL 736
Query: 301 RKIPAYSLIE 310
+K+PAYS++E
Sbjct: 737 KKVPAYSVVE 746
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + GD+ S+ +F D W ++ V NGC+ EAI ++ M+ ++
Sbjct: 39 LIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEAISLYHQMLSQQ--IQ 96
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+ SVL +C+G G L +G++VHG I+++ + + TAL+ +YG++G L+ A
Sbjct: 97 ANSYTFPSVLRACSGF---GDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSA 153
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++D+ +W+++ISS+ N E L F M +G + + + V+ AC
Sbjct: 154 RKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGEL 213
Query: 181 QLVELG 186
++ L
Sbjct: 214 GVLRLA 219
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
R + W ++I+ + + G E + +F M + P+ + S LS+ NEG L
Sbjct: 366 RGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFM--PDSFSLASSLSASG---NEGELQ 420
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG Q+HG++++ + ++ +LI++Y K G ++ A +F M K V TWN+MIS L+
Sbjct: 421 LGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLS 479
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVP 201
N +A+ +FD M E+ FV+V+ AC+ +E G + H ++ G + +
Sbjct: 480 QNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIF 539
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
I +VD+ + G L A+ +M E +L+ + +HG + + ++
Sbjct: 540 IET---ALVDMYAKCGDLQTAQRVFDNMS-ERSVVSWSSLISSYGVHGQISEVIFLFSKM 595
Query: 262 LE--LQPKHCGRYVVLSNI-HAG 281
LE ++P VLS HAG
Sbjct: 596 LESGIKPNDVTVMNVLSACSHAG 618
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G +DSA +F M RD+VSW+SII+ V NG E + F+ M+ P+
Sbjct: 144 YGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGG--TPDSV 201
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++V+ +C L G L L K HGYIL+ I F+ ++LI +Y K G L A VF
Sbjct: 202 LVLTVVEACGEL---GVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVF 258
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+++ + TW AMISS KEAL +F M++ + N +T +L +C L+
Sbjct: 259 ENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLR 318
Query: 185 LG 186
G
Sbjct: 319 EG 320
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 14/236 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + SA ++FEN+ R +WT++I+ + G EA+ +F +M V PN
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTE--VEPNSV 302
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCLERAIRV 123
T +L SC L L GK VH +++N++ ++ +G L++LY + ++
Sbjct: 303 TMRIILRSCTNL---SLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKI 359
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
+ + + WN +IS A KE + +F M+++G + + + L+A +
Sbjct: 360 LHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGEL 419
Query: 184 ELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+LGL++ ++ + P M+ Y ++++ + G + A M EP V
Sbjct: 420 QLGLQIHGHVIKR----PFMDEYVFNSLINMYSKCGYVDLAYMIFDQM--EPKGVV 469
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +I+ + T LI+ Y ++G L+ + VF++ D W ++ S N
Sbjct: 19 QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-FEVVPIMEH 205
+EA+ ++ +M + ++AN TF +VL AC+ + +G + ++ F++ P++
Sbjct: 79 CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVN- 137
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPF 231
++ + G G L A++ MP
Sbjct: 138 -TALLSVYGELGYLDSARKVFGEMPL 162
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 187/308 (60%), Gaps = 9/308 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRPN 62
Y K G + +A +F+ M R VV+W S+I+G+ +NG EAI +F M +G V PN
Sbjct: 156 YGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIG----VEPN 211
Query: 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122
AT+VSVLS+CA L G LG VH Y + N + L+V +GT+LI++Y + G + +A
Sbjct: 212 SATFVSVLSACAHL---GAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKARE 268
Query: 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
VF SM ++V W AMIS +N +A+ +F EM+ GL N ITFVAVL+ACA A L
Sbjct: 269 VFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGL 328
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
V G +F SM ++ +VP +EH+ C+VD+LGRAGLL EA F++ + EP ++ A+L
Sbjct: 329 VNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAML 388
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
GACK+H L +V L +P + YV+LSNI+A R ++ +R M+ ++K
Sbjct: 389 GACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKK 448
Query: 303 IPAYSLIE 310
YS I+
Sbjct: 449 QVGYSTID 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D +TS+I + F F M N V P+ T+ SV+ SCA LV L
Sbjct: 74 DSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSN-VAPSNYTFTSVIKSCADLV---ALRH 129
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ +HG++L N V++ TAL+ YGK G L A +VF M + V TWN+MIS
Sbjct: 130 GRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQ 189
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-FEVVPIM 203
N KEA+ +FD MKE G+ N TFV+VL+ACA LG + +G ++ ++
Sbjct: 190 NGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVL 249
Query: 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGR 259
++++ R G +S+A+E SM E + A++ +G AV+L HE+ R
Sbjct: 250 G--TSLINMYTRCGNVSKAREVFDSMK-ERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306
Query: 260 RLLELQPKHCGRYVVLSN-IHAGL 282
L P VLS HAGL
Sbjct: 307 N--GLLPNSITFVAVLSACAHAGL 328
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + G++ A +F++M +R+VV+WT++I+G+ NG +A+ +F M N L
Sbjct: 253 LINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLL-- 310
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+V+VLS+C AGLVNEG Y L E+ V L+D+ G+ G L+
Sbjct: 311 PNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHV----CLVDMLGRAGLLD 366
Query: 119 RAIRVFKSMVIKDV-CTWNAMISS 141
A K + + W AM+ +
Sbjct: 367 EAYNFIKEIHEEPAPAIWTAMLGA 390
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K G +D A ++F+ M + VV+W S+I+G +NG +AI +F M V
Sbjct: 443 LINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMY--VTCPE 500
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E +VSV+ +C+ L G L GK +H ++ + +F+ TAL+D+Y K G L+ A
Sbjct: 501 IGEVAFVSVIQACSHL---GFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTA 557
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF +M + V +W+++ISS + + E + +F +M E G++ N++T + VL+AC+ A
Sbjct: 558 QRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHA 617
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G+ F+SM F + P EH+ C+VDLL RAG L EA E ++ MPF P AS+ GA
Sbjct: 618 GCVKEGMLFFNSMR-DFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGA 676
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH +D+ + R L +Q G Y +LSNI+A WN ++R M G+
Sbjct: 677 LLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGL 736
Query: 301 RKIPAYSLIE 310
+K+PAYS++E
Sbjct: 737 KKVPAYSVVE 746
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + GD+ S+ +F D W ++ V NGC+ EAI ++ M+ ++
Sbjct: 39 LIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEAISLYHQMLSQQ--IQ 96
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+ SVL +C+G G L +G++VHG I+++ + + TAL+ +YG++G L+ A
Sbjct: 97 ANSYTFPSVLRACSGF---GDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSA 153
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M ++D+ +W+++ISS+ N E L F M +G + + + V+ AC
Sbjct: 154 RKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGEL 213
Query: 181 QLVELG 186
++ L
Sbjct: 214 GVLRLA 219
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83
R + W ++I+ + + G E + +F M + P+ + S LS+ NEG L
Sbjct: 366 RGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFM--PDSFSLASSLSASG---NEGELQ 420
Query: 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
LG Q+HG++++ + ++ +LI++Y K G ++ A +F M K V TWN+MIS L+
Sbjct: 421 LGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLS 479
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML--GKFEVVP 201
N +A+ +FD M E+ FV+V+ AC+ +E G + H ++ G + +
Sbjct: 480 QNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIF 539
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
I +VD+ + G L A+ +M E +L+ + +HG + + ++
Sbjct: 540 IET---ALVDMYAKCGDLQTAQRVFDNMS-ERSVVSWSSLISSYGVHGQISEVIFLFSKM 595
Query: 262 LE--LQPKHCGRYVVLSNI-HAG 281
LE ++P VLS HAG
Sbjct: 596 LESGIKPNDVTVMNVLSACSHAG 618
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G +DSA +F M RD+VSW+SII+ V NG E + F+ M+ P+
Sbjct: 144 YGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGG--TPDSV 201
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++V+ +C L G L L K HGYIL+ I F+ ++LI +Y K G L A VF
Sbjct: 202 LVLTVVEACGEL---GVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVF 258
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+++ + TW AMISS KEAL +F M++ + N +T +L +C L+
Sbjct: 259 ENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLR 318
Query: 185 LG 186
G
Sbjct: 319 EG 320
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 14/236 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + SA ++FEN+ R +WT++I+ + G EA+ +F +M V PN
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTE--VEPNSV 302
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV-FMGTALIDLYGKVGCLERAIRV 123
T +L SC L L GK VH +++N++ ++ +G L++LY + ++
Sbjct: 303 TMRIILRSCTNL---SLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKI 359
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
+ + + WN +IS A KE + +F M+++G + + + L+A +
Sbjct: 360 LHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGEL 419
Query: 184 ELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+LGL++ ++ + P M+ Y ++++ + G + A M EP V
Sbjct: 420 QLGLQIHGHVIKR----PFMDEYVFNSLINMYSKCGYVDLAYMIFDQM--EPKGVV 469
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
Q+H +I+ + T LI+ Y ++G L+ + VF++ D W ++ S N
Sbjct: 19 QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-FEVVPIMEH 205
+EA+ ++ +M + ++AN TF +VL AC+ + +G + ++ F++ P++
Sbjct: 79 CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVN- 137
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPF 231
++ + G G L A++ MP
Sbjct: 138 -TALLSVYGELGYLDSARKVFGEMPL 162
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 175/294 (59%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M K+ +VSW +I +++N EA+ ++ M + P+ + SVL +C
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM--EADGFEPDAVSITSVLPACG-- 320
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ L LGK++HGYI R +++ ++ + ALID+Y K GCLE+A VF++M +DV +W
Sbjct: 321 -DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMIS+ + R +A+ +F ++++ GL + I FV L AC+ A L+E G F M
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+++ P +EH C+VDLLGRAG + EA F++ M EP+ V GALLGAC++H D+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+L +L P+ G YV+LSNI+A RW T++R M G++K P S +E
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 25/278 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y D+ SA +F+ + +R+V+ +I +V NG +GE + VF M G N VR
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG-CN-VR 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C+ G + +G+++HG + + ++F+G L+ +YGK G L A
Sbjct: 138 PDHYTFPCVLKACSC---SGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR- 179
V M +DV +WN+++ A N R +AL + EM+ + + T ++L A +
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254
Query: 180 -AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDA 235
+ V ++F M GK +V + ++ + + + EA E M FEPDA
Sbjct: 255 TTENVMYVKDMFFKM-GKKSLVS----WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 236 SVLGALLGAC----------KIHGAVDLCHEVGRRLLE 263
+ ++L AC KIHG ++ + LLE
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIIN--GFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G ++ A +FENM RDVVSWT++I+ GF GC +A+ +F + + L
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGC--DAVALFSKLQ-DSGL 406
Query: 59 VRPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V P+ +V+ L++C AGL+ EG Y +I + ++DL G+ G
Sbjct: 407 V-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY----KITPRLEHLACMVDLLGRAGK 461
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEM 158
++ A R + M ++ + W A++ + +S L+ D++
Sbjct: 462 VKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ VH I+ ++ + +G L+ Y + + A +VF + ++V N MI S +N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
E + +F M +R + TF VL AC+ + + +G ++ H K + +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKI-HGSATKVGLSSTLFV 177
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSM 229
+V + G+ G LSEA+ + M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 184/312 (58%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +F M R+V++WT+++ G +NG +A+ +F M +
Sbjct: 372 IVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEG--IA 429
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+VS++ SCA L G L G+ +HG++ R + TAL+D+Y K G + A
Sbjct: 430 ANSVTFVSLVHSCAHL---GSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLA 486
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F I KDV WN+MI+ + +A+ ++ +M E+GL+ N+ TF+++L+AC+
Sbjct: 487 ERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSH 546
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LVE G+ LF+SM + PI +HY C+VDLL RAG EA+ + MPF+P +VL
Sbjct: 547 SRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLE 606
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL C+ H ++L + +LL L + G Y++LSNI+A RW++ +R M G
Sbjct: 607 ALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRG 666
Query: 300 IRKIPAYSLIEA 311
++K P YSL+E
Sbjct: 667 LKKTPGYSLVET 678
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 142/264 (53%), Gaps = 17/264 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNVN 57
+D Y K GD++SA +F M R++VSW ++I+G VRNG GE+ +F ++ G +
Sbjct: 272 FVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFD 331
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L T VS+L C+ L GK +HG +R+ ++ + TA++DLY K G L
Sbjct: 332 LT-----TIVSLLQGCS---QTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSL 382
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++A VF M ++V TW AM+ LA N ++AL +F +M+E+G+ AN +TFV+++ +C
Sbjct: 383 KQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSC 442
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A ++ G + H L + + + +VD+ + G ++ A+ D +
Sbjct: 443 AHLGSLKRGRSI-HGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVL 501
Query: 238 LGALLGACKIHG----AVDLCHEV 257
+++ +HG AV + H++
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKM 525
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 7/222 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI VK G + A +F+ M +DVV W SII G+V+ GCF A +F M G+ ++
Sbjct: 171 MISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG--IK 228
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T S++ +C G+ G L LGK +HGY+L + + + T+ +D+Y K+G +E A
Sbjct: 229 PSPITMTSLIQACGGI---GNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESA 285
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +++ +WNAMIS N E+ +F + + T V++L C++
Sbjct: 286 RWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQT 345
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ G L + FE I+ +VDL + G L +A
Sbjct: 346 ASLATGKILHGCAIRSFESNLILS--TAIVDLYSKCGSLKQA 385
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 120/266 (45%), Gaps = 17/266 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y +++A +F+ + + +++ G++++G + E + +F +M + NL
Sbjct: 70 LVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELF-GLMRSRNL-E 127
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + L +CA ++ +G ++ + + + F+G+++I K G + A
Sbjct: 128 VDSCSCTFALKACASSLD---YEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEA 184
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M KDV WN++I A +F EM G++ + IT +++ AC
Sbjct: 185 QRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGI 244
Query: 181 QLVELGLELFHSM---LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
++LG + H LG + ++ + VD+ + G + A+ MP S
Sbjct: 245 GNLKLG-KCMHGYVLGLGLGNDILVLTSF---VDMYSKMGDIESARWVFYKMPTRNLVS- 299
Query: 238 LGALLGACKIHGAV----DLCHEVGR 259
A++ C +G V DL H + R
Sbjct: 300 WNAMISGCVRNGLVGESFDLFHRLVR 325
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K H I+ N + F+ T L+ Y + LE A VF NAM+ +
Sbjct: 49 KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
R +E L +F M+ + L + + L ACA + E+G+E+ S + K ME
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKG-----MEK 163
Query: 206 Y----GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
++ L + G + EA+ MP D +++G G D+ ++
Sbjct: 164 NRFVGSSMISFLVKFGKIGEAQRVFDGMP-NKDVVCWNSIIGGYVQAGCFDVAFQL 218
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + A +F +M R++VSW+++I + +N G+AI +F+ MM + +
Sbjct: 396 LIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLV 455
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CAG+ L GK +H YILR L V + AL+ +Y K GCLE
Sbjct: 456 PNSITIVSVLHACAGV---NALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETG 512
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+F + ++V +WN++IS + +E+L +F+EM E+G+ N ITFV+VL AC+
Sbjct: 513 RYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSH 572
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G +LF SM+ ++ V P EHY C+VDLLGRAG L EA E ++SM +P V G
Sbjct: 573 VGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWG 631
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC+IHG V+ L +L+P++ G YV+L++I+A + N+ L++ + E
Sbjct: 632 SLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHA 691
Query: 300 IRKIPAYSLIE 310
+ K+P S IE
Sbjct: 692 LEKVPGCSWIE 702
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 6/182 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + +A +F+ +++ W +++ EA+ +M G + V
Sbjct: 290 LIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADM-GRLG-VP 347
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ +Y L +C A + +++H + +R L + T LID Y K+G +
Sbjct: 348 VDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVS 407
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTA 176
A RVF SM +++ +W+AMI A N R +A+ +F EM + L N IT V+VL A
Sbjct: 408 YAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHA 467
Query: 177 CA 178
CA
Sbjct: 468 CA 469
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGC 116
L P + TY S+L + A + L VH + + + S F+ T LI+ Y +
Sbjct: 243 LPAPTQRTYESLLLAAARARDTA---LAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSA 299
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A +VF +K++ WNAM+ +LA +EAL +M G+ + ++ L A
Sbjct: 300 LPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKA 359
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYG-------CVVDLLGRAGLLSEAKEFMRSM 229
C A L + + + I YG ++D + G++S A+ SM
Sbjct: 360 CIAASASHLPAS---ARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSM 416
Query: 230 P 230
P
Sbjct: 417 P 417
>gi|413953445|gb|AFW86094.1| hypothetical protein ZEAMMB73_140838 [Zea mays]
Length = 508
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 186/311 (59%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + G + A LF M R VVSWT++++G+ +NG EA+ F +M VR
Sbjct: 158 MLSAYARGGRVGDAERLFAGMPDRSVVSWTAMVSGYAQNGRHEEAVRTFLDMWDGAG-VR 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA L L LG++V Y ++ +V++ AL+++Y K G + RA
Sbjct: 217 PNELTVSSVLPACAALGA---LALGRKVERYARGRGMLRNVYVANALVEMYAKCGSIRRA 273
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+VF+ M +D+C+WN+MI + A + EAL +F +++ G + + ITFV V+ AC
Sbjct: 274 WKVFRGMGTRRDLCSWNSMIMAFAVHGLWTEALALFHKLRMTGAKPDGITFVGVILACTH 333
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LV+ G LF+SM G+F + P +EHYGC+VDLLGRAGLL EA + SMP EPDA + G
Sbjct: 334 GGLVDEGKLLFNSMRGEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWG 393
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC HG +L +L+ L+P + V+LSNI+A +W+ + K + E
Sbjct: 394 ALLGACSFHGNFELAEIAVEKLMHLEPHNTANLVILSNIYASCGKWDGVARVWKLLKEKD 453
Query: 300 IRKIPAYSLIE 310
+K YS IE
Sbjct: 454 HKKSAGYSFIE 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGL 163
A++ Y + G + A R+F M + V +W AM+S A N R +EA+ F +M + G+
Sbjct: 156 NAMLSAYARGGRVGDAERLFAGMPDRSVVSWTAMVSGYAQNGRHEEAVRTFLDMWDGAGV 215
Query: 164 RANEITFVAV 173
R NE+T +V
Sbjct: 216 RPNELTVSSV 225
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 181/299 (60%), Gaps = 6/299 (2%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D+ IL E + +V WT++I+G ++N C A+ +++ M N + P++AT+V+VL
Sbjct: 573 DANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNN--ISPDQATFVTVLQ 630
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK- 130
+CA L L+ G+++H I L +AL+D+Y K G ++ +++VF+ + K
Sbjct: 631 ACALL---SSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKK 687
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
DV +WN+MI A N K AL +FDEM + + +++TF+ VLTAC+ A V G ++F
Sbjct: 688 DVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIF 747
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
M+ + + P ++HY C+VDLLGR G L EA+EF+ + EP+A + LLGAC+IHG
Sbjct: 748 DVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGD 807
Query: 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
++L+EL+P+ YV+LSN++A W+ A LR+ M++ I+KIP S I
Sbjct: 808 EKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWI 866
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 139/268 (51%), Gaps = 10/268 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y K D A +F+ + +++++ W +++ + +NG + +F +M+ +
Sbjct: 258 LINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCG--IH 315
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E TY S+LS+CA L +G+Q+H I++ ++F+ ALID+Y K G L+ A
Sbjct: 316 PDEFTYTSILSTCACFEY---LEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEA 372
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F+ M +D +WNA+I E A +F M G+ +E++ ++L+AC
Sbjct: 373 GKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNI 432
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++E G + FH + K + + ++D+ + G + +A + SMP SV
Sbjct: 433 KVLEAG-QQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNAL 491
Query: 241 LLGAC--KIHGAVDLCHEVGRRLLELQP 266
+ G +++L HE+ ++L L+P
Sbjct: 492 IAGYALKNTKESINLLHEM--QILGLKP 517
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 127/245 (51%), Gaps = 8/245 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+++ Y+ G +D A LF+ M R+VV+W +I+G + + EA+ F M + +
Sbjct: 155 VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQM--SKHG 212
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V+ + +T SVLS+ A L L G VH + ++ S+++ ++LI++YGK +
Sbjct: 213 VKSSRSTLASVLSAIASL---AALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPD 269
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +VF ++ K++ WNAM+ + N + +F +M G+ +E T+ ++L+ CA
Sbjct: 270 DARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCA 329
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ +E+G +L HS + K + ++D+ +AG L EA + M + S
Sbjct: 330 CFEYLEVGRQL-HSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWN 388
Query: 239 GALLG 243
++G
Sbjct: 389 AIIVG 393
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
++D Y K GD+ S++ +FE + K+DV+SW S+I GF +NG A+ VF M + +
Sbjct: 663 LVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSC--I 720
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLE 118
P++ T++ VL++C+ + G +Y G+Q+ ++ I V ++DL G+ G L+
Sbjct: 721 TPDDVTFLGVLTACS---HAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLK 777
Query: 119 RAIRVFKSMVIKDVCTWNAMI 139
A + ++ NAMI
Sbjct: 778 EAEEFIDKLEVEP----NAMI 794
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 47/227 (20%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VSWT++I+G+V+ G EA+ +F M N P++ V+VL++
Sbjct: 115 TVSWTALISGYVQAGLPHEALHIFDKMR---NSAVPDQVALVTVLNA------------- 158
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLA 143
Y +G L+ A ++F+ M I++V WN MIS A
Sbjct: 159 -------------------------YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHA 193
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPI 202
+ +EAL F +M + G++++ T +VL+A A + GL + H++ FE
Sbjct: 194 KTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIY 253
Query: 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ ++++ G+ + +A++ ++ + + V A+LG +G
Sbjct: 254 VA--SSLINMYGKCQMPDDARQVFDAIS-QKNMIVWNAMLGVYSQNG 297
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ LS+CA L N L+LG+ VH ++++ + + F ALI LY K L A
Sbjct: 45 PDQFTFAVTLSACAKLQN---LHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCA 101
Query: 121 IRVFKSMVIKDVCT--WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F S + T W A+IS EAL +FD+M+ + +++ V VL A
Sbjct: 102 RTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYI 160
Query: 179 RAQLVELGLELFHSM 193
++ +LF M
Sbjct: 161 SLGKLDDACQLFQQM 175
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + SA +F+ M +++V+SWT+++ G+ +NG EA+ +F M N V
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG--VE 368
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q H L + ++ + + ALI LYGK G E +
Sbjct: 369 PDDFTLGSVISSCANLAS---LEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENS 425
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M I+D +W A+++ A + E + +F+ M GL+ + +TF+ VL+AC+RA
Sbjct: 426 HRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRA 485
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F SM+ + ++PI++H C++DLLGRAG L EA+ F+ +MP PD
Sbjct: 486 GLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWAT 545
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C++HG +++ L+ L+P++ YV+LS+++A +W++ LR+ M + +
Sbjct: 546 LLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRV 605
Query: 301 RKIPAYSLIE 310
RK P YS I+
Sbjct: 606 RKEPGYSWIK 615
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 130/250 (52%), Gaps = 6/250 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++ G ++ + LF + +RD +SWT +I G ++NG EA+ +F+ M +
Sbjct: 210 MITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM--RLAGFA 267
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ SVL++C L+ G GKQ+H Y++R + +VF+G+AL+D+Y K ++ A
Sbjct: 268 MDQFTFGSVLTACGSLLALGE---GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSA 324
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK M K+V +W AM+ N +EA+ +F EM+ G+ ++ T +V+++CA
Sbjct: 325 ETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANL 384
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + FH ++ + ++ L G+ G + M + S
Sbjct: 385 ASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTAL 443
Query: 241 LLGACKIHGA 250
L G + A
Sbjct: 444 LAGYAQFGKA 453
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 40/292 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + +F M RD VSW I+G+ G +A+ V+K M+ + + N
Sbjct: 81 YSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM-NLNRI 139
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ ++L C+ + LG+Q++G IL+ VF+G+ L+D+Y K+G + A R F
Sbjct: 140 TFSTMLILCSKF---RCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196
Query: 125 KSMVIKDVC-------------------------------TWNAMISSLASNSREKEALV 153
M ++V +W MI+ L N E+EAL
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
MF EM+ G ++ TF +VLTAC + G ++ H+ + + + + +VD+
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQI-HAYVIRTDHKDNVFVGSALVDMY 315
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265
+ + A+ + MP + S L+G +G E + E+Q
Sbjct: 316 SKCRSIKSAETVFKRMPQKNVISWTAMLVG----YGQNGFSEEAVKIFFEMQ 363
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM- 158
++F ++ +Y K+G L + ++F M +D +WN IS A+ +A+ ++ M
Sbjct: 70 NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
K+ + N ITF +L C++ + V+LG ++ +L KF + +VD+ + GL
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQIL-KFGFGSDVFVGSPLVDMYTKLGL 188
Query: 219 LSEAKEFMRSMP 230
+ +AK + MP
Sbjct: 189 IYDAKRYFDEMP 200
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DG V+ D+D+A +F M +R+VVSW ++I GFVR+G EA+ +F M L
Sbjct: 137 LLDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLA- 195
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT V +S+ + G L +G+ HGY++R E L +G ALI++Y + G + A
Sbjct: 196 PDEATMVGFVSAVRDM---GVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDA 252
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F S+ K+V W ++I A++ + AL +F EM++ G+ N +TF+AVL AC+
Sbjct: 253 FRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHG 312
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F+ ++ + M+HYGC++DLLGRAG L EA E S+P +P + +
Sbjct: 313 GLVNEGFKYFN-LMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSS 371
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V++ R+L +P+H YV+LSN +A +W R+ M E G+
Sbjct: 372 LLAACQSHGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGV 431
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 432 MKQPGLSWIE 441
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 180/310 (58%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M+ A L+F + +D+VSW ++I G+ +N EA+ +F M R
Sbjct: 796 LMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES---R 852
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +L +C L L +G+ +HG ILRN + + ALID+Y K G L A
Sbjct: 853 PDGITMACLLPACGSL---AALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHA 909
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ TW MIS + EA+ F +M+ G++ +EITF ++L AC+ +
Sbjct: 910 RLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHS 969
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+ G F+SM+ + + P +EHY C+VDLL R G LS+A + +MP +PDA++ GA
Sbjct: 970 GLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGA 1029
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V+L +V + EL+P + G YV+L+NI+A E+W LR+ + + G+
Sbjct: 1030 LLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGL 1089
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 1090 KKSPGCSWIE 1099
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 8/249 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+++ AI FE M ++ VVSWTS+I +VR G + +AI +F M V
Sbjct: 695 LLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG--VS 752
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + SVL +CA L G+ VH YI +N + L + + AL+D+Y K G +E A
Sbjct: 753 PDVYSMTSVLHACAC---GNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEA 809
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + +KD+ +WN MI + NS EAL +F EM+++ R + IT +L AC
Sbjct: 810 YLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSL 868
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E+G + H + + + ++D+ + G L A+ +P E D
Sbjct: 869 AALEIGRGI-HGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTV 926
Query: 241 LLGACKIHG 249
++ C +HG
Sbjct: 927 MISGCGMHG 935
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 6/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K+G++DSA LF+ + RDVVSW S+I+G V NG A+ F M+ + V
Sbjct: 594 LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML--ILRVG 651
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ AT V+ +++CA N G L LG+ +HG ++ V L+D+Y K G L A
Sbjct: 652 VDLATLVNSVAACA---NVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDA 708
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I+ F+ M K V +W ++I++ +A+ +F EM+ KG+ + + +VL ACA
Sbjct: 709 IQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACG 768
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G ++ H+ + K + + ++D+ + G + EA +P
Sbjct: 769 NSLDKGRDV-HNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIP 817
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 46 ICVFKNMMGNVNLVRPNEAT------YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL 99
C ++ V L+R ++ + Y S+L CA L GK VH I N I +
Sbjct: 428 FCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCA---EHKCLQEGKMVHSVISSNGIPI 484
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDEM 158
+G L+ +Y G L R+F ++ + V WN M+S A +E++ +F +M
Sbjct: 485 EGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKM 544
Query: 159 KEKGLRANEITFVAVL 174
++ G+ N TF +L
Sbjct: 545 QKLGITGNSYTFSCIL 560
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 10/188 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRD-VVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNLVRP 61
YV G + +F+++L + V W +++ + + G + E+I +FK M +G +
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG----ITG 551
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N T+ +L A L G + K++HG + + + +LI Y K G ++ A
Sbjct: 552 NSYTFSCILKCFATL---GRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAH 608
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
++F + +DV +WN+MIS N AL F +M + + T V + ACA
Sbjct: 609 KLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVG 668
Query: 182 LVELGLEL 189
+ LG L
Sbjct: 669 SLSLGRAL 676
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 185/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G + A +F M +++VSW+++I + +N +A+ +F+ MM
Sbjct: 220 LLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTV 279
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L L GK VH Y+LR + ++ + LI +YG+ G +
Sbjct: 280 PNPITMVSVLQACASL---AALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTG 336
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +DV +WN++IS + K+A+ +F+ M +G+ + ITF+ VL AC+ A
Sbjct: 337 QRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHA 396
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE LF SML K+ + P MEHY C+VD+LGRA L EA E +++M F+P +V G+
Sbjct: 397 GLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+IH V+L L EL+PK+ G YV+LS+I+A WN +RK + G+
Sbjct: 457 LLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGL 516
Query: 301 RKIPAYSLIE 310
+KIP+ S IE
Sbjct: 517 QKIPSCSWIE 526
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 122/257 (47%), Gaps = 17/257 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y G +D A +F+ ++ + W +I GE + V M + +
Sbjct: 115 LINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAM-ASRGEDLLVLYGQMNWIG-IP 172
Query: 61 PNEATYVSVLSSCAGLVNE---GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
N TY VL +C +V+E L GK++H +ILR+ V + T L+D+Y + G +
Sbjct: 173 SNRFTYTYVLKAC--VVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYV 230
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA--NEITFVAVLT 175
A VF +M K++ +W+AMI+ A N +AL +F M + N IT V+VL
Sbjct: 231 SYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQ 290
Query: 176 ACARAQLVELGLELFHSML---GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
ACA +E G +L H+ + G +P++ ++ + GR G +S + M +
Sbjct: 291 ACASLAALEHG-KLVHAYVLRRGLDSTLPVL---NTLITMYGRCGEISTGQRVFDYMK-K 345
Query: 233 PDASVLGALLGACKIHG 249
D +L+ +HG
Sbjct: 346 RDVISWNSLISIYGMHG 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 44 EAICVFKNMMGNVNLV----RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL 99
+++C N+ V L+ P + T+ +++SC + + L G VH ++ + +
Sbjct: 51 QSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSC---IEQNSLSDGVDVHHRLVGSGLDQ 107
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
++ T LI++Y +G ++ A +VF K + WNA+ +LA SR ++ LV++ +M
Sbjct: 108 DPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMN 167
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLE---------LFHSMLGKFEVVPIMEHYGCVV 210
G+ +N T+ VL AC ++L L L H G V+ + +
Sbjct: 168 WIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTL------L 221
Query: 211 DLLGRAGLLSEAKEFMRSMP 230
D+ R G +S A +MP
Sbjct: 222 DVYARFGYVSYASSVFGAMP 241
>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Glycine max]
Length = 699
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 183/311 (58%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +FE ML++DVVSW SII+GFV++G EA+ +F+ M + L
Sbjct: 379 LVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRM--GLELFS 436
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLER 119
P+ T V +LS+CA L G L+LG VHG L++ +V+S +++GTAL++ Y K G
Sbjct: 437 PDAVTVVGILSACASL---GMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARA 493
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF SM K+ TW AMI +L +F +M E+ + NE+ F +L AC+
Sbjct: 494 ARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSH 553
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ +V G LF+ M G+ VP M+HY C+VD+L RAG L EA +F+ MP +P SV G
Sbjct: 554 SGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSVFG 613
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A L C +H +L +++LEL P YV++SN++A RW +R+ + + G
Sbjct: 614 AFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQVREMIKQRG 673
Query: 300 IRKIPAYSLIE 310
+ K+P S +E
Sbjct: 674 LNKVPGCSSVE 684
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 21/274 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
++D Y K +D A F+ + + D VVSWTS+I +V+N C E + +F M V
Sbjct: 173 LVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRM--REAFV 230
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T S++S+C L L+ GK VHG++++N I ++ ++ T+L+++Y K G ++
Sbjct: 231 DGNEFTVGSLVSACTKL---NWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQD 287
Query: 120 AIRVF----KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175
A +VF S +D+ +W AMI + AL +F + K G+ N +T ++L+
Sbjct: 288 ACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLS 347
Query: 176 ACARAQLVELGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
+CA+ +G +L H + K + P+ +VD+ + G++S+A+ +M E
Sbjct: 348 SCAQLGNSVMG-KLLHGLAVKCGLDDHPVRN---ALVDMYAKCGVVSDARCVFEAM-LEK 402
Query: 234 DA----SVLGALLGACKIHGAVDLCHEVGRRLLE 263
D S++ + + + + A++L +G L
Sbjct: 403 DVVSWNSIISGFVQSGEAYEALNLFRRMGLELFS 436
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 11/267 (4%)
Query: 1 MIDGYVKNGDMDSAILLFE----NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+++ YVK G++ A +F+ + RD+VSWT++I G+ + G A+ +FK+
Sbjct: 275 LLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDK--KW 332
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+ + PN T S+LSSCA L G +GK +HG ++ + + AL+D+Y K G
Sbjct: 333 SGILPNSVTVSSLLSSCAQL---GNSVMGKLLHGLAVKCGLDDHP-VRNALVDMYAKCGV 388
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A VF++M+ KDV +WN++IS + EAL +F M + + +T V +L+A
Sbjct: 389 VSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSA 448
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA ++ LG + L VV + +++ + G A+ SM E +A
Sbjct: 449 CASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMG-EKNAV 507
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE 263
GA++G + G + + R +LE
Sbjct: 508 TWGAMIGGYGMQGDGNGSLTLFRDMLE 534
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + A +F ++ RD+ + +I + N + +++ M +++ +
Sbjct: 75 YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V SCA + L + H + +++ + F+ T L+D Y K ++ A R F
Sbjct: 135 LFSIVFKSCAESRDFQTLTI---THCHFVKS-LPSDSFVLTCLVDAYAKFARVDEATRAF 190
Query: 125 KSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
+ DV +W +MI + N +E L +F+ M+E + NE T ++++AC + +
Sbjct: 191 DEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWL 250
Query: 184 ELG 186
G
Sbjct: 251 HQG 253
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI V G MD A LF+ + +++V SW ++I+G+ RN GEA+ +F M+ + R
Sbjct: 319 MITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLRSC--FR 376
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SV++SC G+V Q H ++ + ++ ALI LY K G L A
Sbjct: 377 PNETTMTSVVTSCDGMVEL------MQAHAMVIHLGFEHNTWLTNALITLYSKSGDLCSA 430
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + KDV +W AMI + +++ AL +F M G++ +E+TFV +L+AC+
Sbjct: 431 RLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSACSHV 490
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP-DASVLG 239
LV G LF S+ G + + P EHY C+VD+LGRAGL+ EA + + ++P D +VL
Sbjct: 491 GLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDVVATIPPSARDEAVLV 550
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC++HG V + + +G +LLEL+P G YV+L+N +A +W+ +RK M E
Sbjct: 551 ALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMRERN 610
Query: 300 IRKIPAYSLIE 310
+++IP YS I+
Sbjct: 611 VKRIPGYSQIQ 621
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 22/230 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY K G +D A +F+NM +R+ SWTS+I+G+ G EA+ +F + M N+V
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLF-DQMPERNVV- 190
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
T V + + GL++ G + Y++ + +++ TA++ Y GC A
Sbjct: 191 --SWTMVVLGFARNGLMDHAGRFF------YLMPEKNIIA---WTAMVKAYLDNGCFSEA 239
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M ++V +WN MIS +R EA+ +F+ M ++ N +++ A+++ A+
Sbjct: 240 YKLFLEMPERNVRSWNIMISGCLRANRVDEAIGLFESMPDR----NHVSWTAMVSGLAQN 295
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+++ + + F M K M + ++ GL+ EA++ +P
Sbjct: 296 KMIGIARKYFDLMPYK-----DMAAWTAMITACVDEGLMDEARKLFDQIP 340
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 136/276 (49%), Gaps = 34/276 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y+KN D+ A +F+ M +R+VV+ +++I+G+ + G +A VF NM +
Sbjct: 102 MIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFDNM------TQ 155
Query: 61 PNEATYVSVLS---SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
N ++ S++S SC + E L+L Q+ RN V T ++ + + G +
Sbjct: 156 RNAFSWTSLISGYFSCGKI--EEALHLFDQMPE---RN-----VVSWTMVVLGFARNGLM 205
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A R F M K++ W AM+ + N EA +F EM E+ +R+ I +++ C
Sbjct: 206 DHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNI----MISGC 261
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
RA V+ + LF SM + V + +V L + ++ A+++ MP++ D +
Sbjct: 262 LRANRVDEAIGLFESMPDRNHV-----SWTAMVSGLAQNKMIGIARKYFDLMPYK-DMAA 315
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQP-KHCGRY 272
A++ AC G +D R+L + P K+ G +
Sbjct: 316 WTAMITACVDEGLMD----EARKLFDQIPEKNVGSW 347
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 34/215 (15%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM----------- 52
G+ +NG MD A F M ++++++WT+++ ++ NGCF EA +F M
Sbjct: 198 GFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIM 257
Query: 53 -MGNVNLVRPNEA----------TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV 101
G + R +EA +VS + +GL + + ++ + ++
Sbjct: 258 ISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMAAWT 317
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
M TA +D G ++ A ++F + K+V +WN MI A NS EAL +F M
Sbjct: 318 AMITACVD----EGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLRS 373
Query: 162 GLRANEITFVAVLTAC--------ARAQLVELGLE 188
R NE T +V+T+C A A ++ LG E
Sbjct: 374 CFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFE 408
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 183/313 (58%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + + ++F + K + VSW S+I +V+N +A VF + +
Sbjct: 250 LIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVF--LRARKEGIE 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SVLS+CAGL L +GK VH ++ +V ++F+G+AL+D+YGK G +E A
Sbjct: 308 PTDFMVSSVLSACAGL---SVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 364
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--ANEITFVAVLTACA 178
R F M +++ TWNAMI A + A+ +FDEM R N +TFV VL+AC+
Sbjct: 365 ERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACS 424
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
RA V +G+E+F SM G++ + P EHY CVVDLLGRAG++ +A +F++ MP P SV
Sbjct: 425 RAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVW 484
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGA K+ G +L L EL P G +V+LSN+ A RW AT +RK M +
Sbjct: 485 GALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDV 544
Query: 299 GIRKIPAYSLIEA 311
GI+K S I A
Sbjct: 545 GIKKGAGCSWITA 557
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K +SA LL R VV+WT++I G V+NG F A+ F NM + ++
Sbjct: 48 LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNM--RRDSIQ 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T+ + L + +GKQVH ++ + VF+G + D+Y K G E A
Sbjct: 106 PNDFTFPCAFKASGSLRSP---LVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEA 162
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +++ TWNA +S+ R +AL F E + +G N ITF A L ACA A
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGA 222
Query: 181 QLVELGLEL 189
+ LG +L
Sbjct: 223 SYLRLGRQL 231
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 13/255 (5%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
D Y K G + A +F+ M +R++ +W + ++ V G + +A+ F P
Sbjct: 150 FDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEG--WEP 207
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---VGCLE 118
N T+ + L++CAG L LG+Q+HG++L++ V + LID YGK VGC E
Sbjct: 208 NLITFCAFLNACAG---ASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSE 264
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + + +W +MI S N E++A ++F +++G+ + +VL+ACA
Sbjct: 265 ---IIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++E+G + H++ K VV + +VD+ G+ G + +A+ MP E +
Sbjct: 322 GLSVLEVGKSV-HTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTW 379
Query: 239 GALLGACKIHGAVDL 253
A++G G D+
Sbjct: 380 NAMIGGYAHQGQADM 394
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 186/314 (59%), Gaps = 10/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+++A +LF+ +D W SII+G+V+N CF E + +F+ +M + L
Sbjct: 177 MISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFR-LMQSTGL-E 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EA VS+L +CA L G + +G VH Y+ + LSV + T LID+Y K G L+ A
Sbjct: 235 PDEAILVSILCACAHL---GAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIA 291
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M +D WNAMIS +A N AL +F EM++ G++ ++ITF+A+ TAC+ +
Sbjct: 292 KKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYS 351
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP--FEPDASVL 238
+ + L +SM + + P EHYGC+VDLLGRAGLL EAKE + MP P +
Sbjct: 352 GMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAI 411
Query: 239 G--ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
ALL AC HG ++ + +RL L+ H G YV+LSN++A + + +RK M
Sbjct: 412 AWRALLSACCSHGQTEVAEDAAQRLFHLE-HHSGAYVLLSNLYAAAGKQDHVRRIRKMME 470
Query: 297 EAGIRKIPAYSLIE 310
G+ K P S ++
Sbjct: 471 NRGVDKAPGCSSVK 484
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 38/276 (13%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A LF+ + + ++I FV G I ++ M+ N + P+ T
Sbjct: 52 HGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENG--LYPDNYTLP 109
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL----------------- 110
VL +CAGL + +LG+ HG ++ +F+G LI +
Sbjct: 110 YVLKACAGLQS---CHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEM 166
Query: 111 --------------YGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
Y KVG +E A +F +KD W ++IS N+ KE L MF
Sbjct: 167 PWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFR 226
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216
M+ GL +E V++L ACA +E+G+ + H L + + ++D+ +
Sbjct: 227 LMQSTGLEPDEAILVSILCACAHLGAMEIGVWV-HRYLDQLGHPLSVRLSTGLIDMYAKC 285
Query: 217 GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
G L AK+ M + D A++ ++G D
Sbjct: 286 GSLDIAKKLFDGMS-QRDTICWNAMISGMAMNGDGD 320
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K G+ + A+ +F+ M+ D + W SII GF +N A+ +FK M +
Sbjct: 200 LIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAE 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+AT SVL +C GL L LG Q H +I++ + + + AL+D+Y K G LE A
Sbjct: 260 --QATLTSVLRACTGL---ALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF M +DV TW+ MIS LA N +EAL +F+ MK G + N IT V VL AC+ A
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F SM + + P+ EHYGC++DLLG+AG L +A + + M EPDA
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ + L ++++ L P+ G Y +LSNI+A ++W+ ++R M + GI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 493 KKEPGCSWIE 502
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK ++ A LF+ M +R+V+SWT++I+ + + +A+ + M+ + VR
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN--VR 159
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY SVL SC G+ + L+ G I++ + VF+ +ALID++ K+G E A
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCG------IIKEGLESDVFVRSALIDVFAKLGEPEDA 213
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF MV D WN++I A NSR AL +F MK G A + T +VL AC
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+ELG++ H + K++ I+ + +VD+ + G L +A M
Sbjct: 274 ALLELGMQA-HVHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQM 319
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ ATY ++ C ++ ++ G + ++ N +F+ LI++Y K L A
Sbjct: 60 DSATYSELIKCC---ISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAH 116
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++F M ++V +W MIS+ + ++AL + M +R N T+ +VL +C
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC 172
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G + A +F+ M ++VVSW+++I + +NG EA+ +F+ MM N +
Sbjct: 215 LMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSV 274
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L GK +H YILR + + + +ALI +Y + G LE
Sbjct: 275 PNSVTMVSVLQACAAF---AALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESG 331
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M KDV WN++ISS + ++A+ +F+EM + G + I+F++VL AC+
Sbjct: 332 QLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHT 391
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +LF SM+ + + P +EHY C+VDLLGRA L EA + + + EP V G+
Sbjct: 392 GLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGS 451
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+IH V+L +RL +L+P + G YV+L++I+A E W+ ++K + +
Sbjct: 452 LLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSREL 511
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 512 QKVPGRSWIE 521
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 15/256 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFK--NMMGNVNL 58
+I+ + + +D+A +F+ KR + W ++ G + + ++ NMMG
Sbjct: 110 LINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMG---- 165
Query: 59 VRPNEATYVSVLSSCAG---LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
V + TY +L +C LV+ L GK++H +ILR+ V + T L+D+Y + G
Sbjct: 166 VSSDRFTYTYLLKACVASECLVS--FLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFG 223
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAV 173
C+ A VF M +K+V +W+AMI+ A N + EAL +F EM N +T V+V
Sbjct: 224 CVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSV 283
Query: 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233
L ACA +E G +L H+ + + + I+ ++ + R G L + M +
Sbjct: 284 LQACAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRM-HKK 341
Query: 234 DASVLGALLGACKIHG 249
D + +L+ + +HG
Sbjct: 342 DVVLWNSLISSYGLHG 357
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
VH ++ F+ T LI+++ ++ ++ A +VF + + WNA+ +LA R
Sbjct: 91 VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQ----LVELGLELFHSML--GKFEVVP 201
+ L ++ M G+ ++ T+ +L AC ++ ++ G E+ +L G V
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVH 210
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+M ++D+ R G +S A MP
Sbjct: 211 VMT---TLMDMYARFGCVSYASAVFDEMP 236
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M A +F+ M +D V+W +++ G+ NG EA+ +F M ++P
Sbjct: 214 VDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG--MKP 271
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ LS+C L G L LG+Q + +E + + +GTALID+Y K G A
Sbjct: 272 DCYAVAGALSACTRL---GALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 328
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M KD+ WNAMI L EK A + +M++ G++ N+ TF+ +L +C
Sbjct: 329 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 388
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G FH+M + + P +EHYGC+VDLL RAGLL EA + + MP +A +LGAL
Sbjct: 389 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 448
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH +L V ++L+ L+P + G YV+LSNI++ RW A LR M G+
Sbjct: 449 LGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 508
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 509 KVPACSWVE 517
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 5/184 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ M V WT++I ++ G EA+ V +N N +RP+
Sbjct: 116 YAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG--MRPDSF 173
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VL++CA + + L G+ V + + SVF+ TA +DLY K G + +A VF
Sbjct: 174 TAVRVLTACARIAD---LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 230
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD W AM+ ASN +EAL +F M+ +G++ + L+AC R ++
Sbjct: 231 DKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALD 290
Query: 185 LGLE 188
LG +
Sbjct: 291 LGRQ 294
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ T L S + L + L G+Q+H L+ + + T+L+ LY K G L
Sbjct: 65 LPNPSHLTIPIALKSASRLPHP--LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 122
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF M W A+I++ +EA+ + G+R + T V VLTAC
Sbjct: 123 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC 182
Query: 178 ARAQLVELGLELFHS--MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AR + G ++ + G + V + VDL + G +++A+E M + DA
Sbjct: 183 ARIADLATGETVWRAAEQEGVAQSVFVAT---AAVDLYVKCGEMAKAREVFDKMRHK-DA 238
Query: 236 SVLGALLGACKIHG 249
GA++G +G
Sbjct: 239 VAWGAMVGGYASNG 252
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M K+D++ W ++I G G A + M + V+
Sbjct: 314 LIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM--EKSGVK 371
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GL+ +G Y Y I + ++DL + G L+
Sbjct: 372 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLY----HISPRIEHYGCMVDLLSRAGLLQ 427
Query: 119 RAIRVFKSM 127
A ++ M
Sbjct: 428 EAHQLVDDM 436
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K +D A +F+ + +R VSW ++I G +NGC +A+ +F M + V+
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM--QLENVK 360
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+ + A + + + +HGY +R + V++ TALID+Y K G + A
Sbjct: 361 PDSFTLVSVIPALADISDP---LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F S + V TWNAMI S+ K A+ +F+EMK G+ NE TF++VL+AC+ A
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F SM + + P MEHYG +VDLLGRAG L EA F++ MP +P SV GA
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGACK+H V+L E +++ EL P+ +V+L+NI+A W +R AM + G+
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597
Query: 301 RKIPAYSLIE 310
+K P +S+I+
Sbjct: 598 QKTPGWSIIQ 607
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M RD V+W +++ G+ RNG A+ + M RP+ T VSVL +CA
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEG-ERPDSITLVSVLPACANA 174
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L ++ H + +R+ + V + TA++D Y K G + A VF M K+ +WN
Sbjct: 175 RA---LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
AMI A N +EAL +F+ M E+G+ +++ +A L AC ++ G+ + H +L
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV-HELL 288
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ +A ++F+ M ++ VSW ++I+G+ +NG EA+ +F M+
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE----- 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VSVL++ G L G +VH ++R + +V + ALI +Y K ++ A
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF + + +WNAMI A N ++A+ +F M+ + ++ + T V+V+ A A
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALA 374
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L CA G L G+ VH + I TAL ++Y K A RVF
Sbjct: 61 TFTSLLKLCAA---RGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVF 117
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVL 174
M ++D WNA+++ A N + A+ M M+ E+G R + IT V+VL
Sbjct: 118 DRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K GDM++A LF M +++ VSWT++I G+VR G A+ +F+ M+ V+
Sbjct: 251 LISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAM--RVK 308
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T+ S L + A + + L GKQ+HGY++R + + + ++LID+Y K G LE +
Sbjct: 309 PEQFTFSSCLCASASIAS---LRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEAS 365
Query: 121 IRVFKSMVIKDVCT-WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
RVF+ K C WN MIS+LA + +AL M D+M + + N T V +L AC+
Sbjct: 366 ERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSH 425
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LVE G+ F SM + +VP EHY C++DLLGRAG E + MPFEPD +
Sbjct: 426 SGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWN 485
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A+LG C+IHG +L + L++L P+ Y++LS+I+A +W LR M +
Sbjct: 486 AILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRR 545
Query: 300 IRKIPAYSLIE 310
+ K A S IE
Sbjct: 546 VNKEKAVSWIE 556
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 130/262 (49%), Gaps = 13/262 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+VK+G + A ++F++M +RDVVSW +++ G+ ++G EA+ FK + + ++
Sbjct: 119 MVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKEL--RRSGIK 176
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ +L++C V L L +Q HG +L + +V + ++ID Y K G +E A
Sbjct: 177 FNEFSFAGLLTAC---VKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESA 233
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R F M +KD+ W +IS A + A +F EM EK N +++ A++ R
Sbjct: 234 KRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEK----NPVSWTALIAGYVRQ 289
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE---FMRSMPFEPDASV 237
+L L+LF M+ V P + + L K+ +M P+A V
Sbjct: 290 GSGDLALDLFRKMIA-MRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIV 348
Query: 238 LGALLGACKIHGAVDLCHEVGR 259
+L+ G+++ V R
Sbjct: 349 TSSLIDMYSKSGSLEASERVFR 370
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 11/192 (5%)
Query: 81 GLYL--GKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
G+Y+ GK + + +++ L +++ ++ + K G L RA VF SM +DV +WN
Sbjct: 90 GMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNT 149
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
M+ A + EAL F E++ G++ NE +F +LTAC +++ ++L + G+
Sbjct: 150 MVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAH----GQV 205
Query: 198 EVVPIMEH--YGC-VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLC 254
V + + C ++D + G + AK M + D + L+ G ++
Sbjct: 206 LVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLISGYAKLGDMEAA 264
Query: 255 HEVGRRLLELQP 266
++ R + E P
Sbjct: 265 DKLFREMPEKNP 276
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 189/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y KNG D A +F M R+ VSW ++I+GF +NG EA+ +F+ M + + ++
Sbjct: 253 LVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREM--STSGLQ 310
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS L +CA + G L LGK +HG+ILR + +GTA++D+Y K G LE A
Sbjct: 311 PDSGALVSALLACADV---GFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESA 366
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +D+ WNAMI+ ++ +AL +F E+ E G++ + TF ++L+A + +
Sbjct: 367 RKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHS 426
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ +F + P +H CVVDLL R+GL+ EA E + SM EP + A
Sbjct: 427 GLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVA 486
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C + ++L + +++LE QP+ G ++SN++A ++W++ ++RK M ++G
Sbjct: 487 LLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGS 546
Query: 301 RKIPAYSLIE 310
+K+P YSLIE
Sbjct: 547 KKVPGYSLIE 556
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 143/283 (50%), Gaps = 15/283 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G M AI +F+ M ++D V+W++++ GFV G EA+ ++ M + V +E
Sbjct: 156 YSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRM--REHGVAEDEV 213
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V V+ +C G +G VHG LR+ + + V + T+L+D+Y K G + A +VF
Sbjct: 214 VMVGVIQAC---TLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVF 270
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ M ++ +WNA+IS A N EAL +F EM GL+ + V+ L ACA ++
Sbjct: 271 RMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLK 330
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG + +L + E I+ V+D+ + G L A++ + D + A++
Sbjct: 331 LGKSIHGFILRRLEFQCILG--TAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAMIAC 387
Query: 245 CKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
C HG A+ L E+ ++P H +LS + H+GL
Sbjct: 388 CGTHGCGHDALALFQELNE--TGIKPDHATFASLLSALSHSGL 428
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 22/272 (8%)
Query: 4 GYVKNGDMDSA--ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
Y + G +D+A L + + +W +++ R G G A+ VF+ + + RP
Sbjct: 53 AYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSA---RP 109
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ T+ L++CA L G L + V VF+ +AL+ +Y + G + AI
Sbjct: 110 DSTTFTLALTACARL---GDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAI 166
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
RVF M KD W+ M++ S R EAL M+ M+E G+ +E+ V V+ AC
Sbjct: 167 RVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTG 226
Query: 182 LVELGLE-----LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+G L H M + +VV +VD+ + G A++ R MP+ +A
Sbjct: 227 NTRMGASVHGRFLRHGM--RMDVVIATS----LVDMYAKNGHFDVARQVFRMMPYR-NAV 279
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE--LQP 266
AL+ +G D ++ R + LQP
Sbjct: 280 SWNALISGFAQNGHADEALDLFREMSTSGLQP 311
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 185/306 (60%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ G +A +LF+ M R +VSW +I G+ +NG EAI +F+ M+ + ++P E
Sbjct: 355 YICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG--IQPYEI 412
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V +C+ L L LGK++H + L+ + +F+ +++ID+Y K GC+ + R+F
Sbjct: 413 AIMCVCGACSQL---SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 469
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ KDV +WN +I+ + R KEAL +F++M GL+ ++ TF +L AC+ A LVE
Sbjct: 470 DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE 529
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
GLE F+ ML + P +EHY CVVD+LGRAG + +A + MP +PD+ + +LL +
Sbjct: 530 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 589
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+IHG + L +V +LLEL+P+ YV++SN+ AG +W+ +R M + G++K
Sbjct: 590 CRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDA 649
Query: 305 AYSLIE 310
S IE
Sbjct: 650 GCSWIE 655
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + ++F+ + ++++ W +I++ + RN F +A+ +F ++ +V +
Sbjct: 147 IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI-SVTEHK 205
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+ +CAGL++ G LG+ +HG + ++V VF+G ALI +YGK G +E A
Sbjct: 206 PDNFTLPCVIKACAGLLDLG---LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 262
Query: 121 I-RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ RVF M K V +WNA++ A NS ++AL ++ +M + GL + T ++L AC+R
Sbjct: 263 VKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 322
Query: 180 AQLVELGLEL 189
+ + G E+
Sbjct: 323 MKSLHYGEEI 332
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 131/265 (49%), Gaps = 8/265 (3%)
Query: 1 MIDGYVKNGDMDSAI-LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+I Y K G ++ A+ +F+ M + V SW +++ G+ +N +A+ ++ M + +
Sbjct: 249 LIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG--L 306
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
P+ T S+L +C+ + + L+ G+++HG+ LRN + + F+G +L+ LY G
Sbjct: 307 DPDWFTIGSLLLACSRMKS---LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA 363
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M + + +WN MI+ + N EA+ +F +M G++ EI + V AC++
Sbjct: 364 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ LG EL H K + + ++D+ + G + ++ + E D +
Sbjct: 424 LSALRLGKEL-HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWN 481
Query: 240 ALLGACKIHGAVDLCHEVGRRLLEL 264
++ IHG E+ ++L L
Sbjct: 482 VIIAGYGIHGRGKEALELFEKMLRL 506
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Query: 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
I +G EA+ + +V L + + VL G + +G+++H +
Sbjct: 74 IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACG--QRKDIEVGRRLHEMV 131
Query: 93 LRNEIVLSVF-MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151
+ + F + T +I +Y G + VF + K++ WNA++S+ N ++A
Sbjct: 132 SASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDA 191
Query: 152 LVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGL-ELFHSMLGKFEVVPIMEHYGCV 209
+ +F E+ + + T V+ AC A L++LGL ++ H M K ++V + +
Sbjct: 192 MSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNAL 249
Query: 210 VDLLGRAGLLSEA 222
+ + G+ GL+ EA
Sbjct: 250 IAMYGKCGLVEEA 262
>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial [Vitis vinifera]
Length = 828
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 188/310 (60%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G++++A ++F R++ SW +I+ F +N A+ +F ++
Sbjct: 523 LITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIE-----FE 577
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V +LS+C L G L GKQ+HG+++R+ + + F+ AL D+Y G L+ A
Sbjct: 578 PNEITIVGILSACTQL---GVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTA 634
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+S + V WN+MIS+ +S +A+ +F EM+E G R + TF+++L+AC+ +
Sbjct: 635 FQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHS 694
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GL + +ML F V EH+ C+VD+LGRAG L EA EF+R MP +P+ V GA
Sbjct: 695 GLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGA 754
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG + + EV L EL+P++ G Y+ LSN++ RW A +LR+ + + G+
Sbjct: 755 LLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGL 814
Query: 301 RKIPAYSLIE 310
+K AYSLI+
Sbjct: 815 KKPAAYSLID 824
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 104/186 (55%), Gaps = 4/186 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + D+ +A +LF+ M +D+VSW ++++G N EA + M + V+
Sbjct: 217 LISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQ-LLGCVQ 275
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V ++ CA L+ L G+ VHG LR E+ L + +LID+Y K ++RA
Sbjct: 276 PDSVTVVIIIPLCAELML---LREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRA 332
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK++ +D+ +WNAMIS + N +EA +F ++ + + + T +A+L +C +
Sbjct: 333 EHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSS 392
Query: 181 QLVELG 186
+ ++ G
Sbjct: 393 EFLQFG 398
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + D S+ LF+ +L RDV+ W ++I V N CFG A+ +F +MG V
Sbjct: 13 LLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG--VG 70
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T + V+S+ + + G L G+ +HG + ++ F+ ALID+Y K G L +
Sbjct: 71 LDSTTLLIVVSASSHM---GNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 127
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF M +D+ +WN+M+ A N+ K++L F +M +A+ ++ ++A A
Sbjct: 128 ECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASA 185
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 128/259 (49%), Gaps = 16/259 (6%)
Query: 5 YVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y+ GD+ + L + + D+V W +++ G +NG F EA+ F M + ++ +
Sbjct: 424 YINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSV 483
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
A + +V+S+C L L+ G +HG L+ + + + ALI +YG+ G +E A +
Sbjct: 484 ALF-NVISACGNL---ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARII 539
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F +++C+WN MIS+ + N + AL +F ++ NEIT V +L+AC + ++
Sbjct: 540 FGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIE---FEPNEITIVGILSACTQLGVL 596
Query: 184 ELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
G ++ H + + + + + D+ G L A + +S P E + +++
Sbjct: 597 RHGKQIHGHVIRSRLQGNSFVS--AALEDMYSNCGRLDTAFQIFQSSP-ERSVAAWNSMI 653
Query: 243 GACKIHG----AVDLCHEV 257
A H A++L HE+
Sbjct: 654 SAFGFHSNGGKAIELFHEM 672
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 12/267 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ S+ +F M RD++SW S++ G N +++ FK M
Sbjct: 114 LIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA-----YS 168
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR---NEIVLSVFMGTALIDLYGKVGCL 117
+A VS+ + + G L G+ +HG+ ++ +I + F +LI LY + +
Sbjct: 169 SEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSF-ENSLISLYSQCRDI 227
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTA 176
+ A +FK M KD+ +WNAM+ LA N R EA + EM+ G ++ + +T V ++
Sbjct: 228 QAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPL 287
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CA L+ G + H + + E+ ++D+ + + A+ +++P E D
Sbjct: 288 CAELMLLREGRAV-HGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIP-ERDLV 345
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLE 263
A++ +G + R+LL+
Sbjct: 346 SWNAMISGYSQNGHSREAQHLFRQLLQ 372
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+L+ Y + + +F ++ +DV WNAMI++ N A+ +F E+ +G+
Sbjct: 11 TSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVG 70
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEA 222
+ T + V++A + + G + H + F+ + + + C ++D+ + G LS +
Sbjct: 71 LDSTTLLIVVSASSHMGNLTQG-RVLHGI--SFKTGLLSDSFLCNALIDMYAKCGELSSS 127
Query: 223 K 223
+
Sbjct: 128 E 128
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 175/294 (59%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M K+ +VSW +I +++N EA+ ++ M + P+ + SVL +C
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM--EADGFEPDAVSITSVLPACG-- 320
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ L LGK++HGYI R +++ ++ + ALID+Y K GCLE+A VF++M +DV +W
Sbjct: 321 -DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMIS+ + R +A+ +F ++++ GL + I FV L AC+ A L+E G F M
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+++ P +EH C+VDLLGRAG + EA F++ M EP+ V GALLGAC++H D+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+L +L P+ G YV+LSNI+A RW T++R M G++K P S +E
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 25/278 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y D+ SA +F+ + +R+V+ +I +V NG +GE + VF M G N VR
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG-CN-VR 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C+ G + +G+++HG + + ++F+G L+ +YGK G L A
Sbjct: 138 PDHYTFPCVLKACSC---SGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
V M +DV +WN+++ A N R +AL + EM+ + + T ++L A +
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254
Query: 181 QL--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDA 235
V ++F M GK +V + ++ + + + EA E M FEPDA
Sbjct: 255 TTENVMYVKDMFFKM-GKKSLVS----WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 236 SVLGALLGAC----------KIHGAVDLCHEVGRRLLE 263
+ ++L AC KIHG ++ + LLE
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIIN--GFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G ++ A +FENM RDVVSWT++I+ GF GC +A+ +F + + L
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGC--DAVALFSKLQ-DSGL 406
Query: 59 VRPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V P+ +V+ L++C AGL+ EG Y +I + ++DL G+ G
Sbjct: 407 V-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY----KITPRLEHLACMVDLLGRAGK 461
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEM 158
++ A R + M ++ + W A++ + +S L+ D++
Sbjct: 462 VKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ VH I+ ++ + +G L+ Y + + A +VF + ++V N MI S +N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
E + +F M +R + TF VL AC+ + + +G ++ H K + +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKI-HGSATKVGLSSTLFV 177
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC---KIHGAVDLCHEV 257
+V + G+ G LSEA+ + M S ++G + A+++C E+
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 177/311 (56%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
+ID Y K G + SA LF +D V+W II +++NG EAI F M +
Sbjct: 572 LIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQM--RLENF 629
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PN T+VSVL + A L G H I++ + + +G +LID+Y K G L
Sbjct: 630 HPNSVTFVSVLPAAAYL---AAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXY 686
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+ ++F M KD +WNAM+S A + A+ +F M+E ++ + ++FV+VL+AC
Sbjct: 687 SEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRH 746
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G ++FHSM K+ + P +EHY C+VDLLGRAGL E F++ MP EPDA V G
Sbjct: 747 XGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWG 806
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLG+C++H V L L++L+P++ +VVLS+I+A RW A R M + G
Sbjct: 807 ALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLG 866
Query: 300 IRKIPAYSLIE 310
++K P S +E
Sbjct: 867 LKKTPGCSWVE 877
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 125/223 (56%), Gaps = 8/223 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+ID Y K GD+D A +F+ M+ +D VSW +++ G+ NGCF E + +F M +GNV
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV--- 325
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R N+ + VS + A ++ L GK++HG L+ I + + T L+ +Y K G E+
Sbjct: 326 RINKVSAVSAFLAAAETID---LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEK 382
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +D+ W+A+I++L +EAL +F EM+ + ++ N +T +++L ACA
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
L++LG + H K ++ + +V + + G + A
Sbjct: 443 LSLLKLGKSI-HCFTVKADMDSDLSTGTALVSMYAKCGFFTAA 484
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 12/266 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G+ + A LF + RD+V+W++II V+ G EA+ +F+ M ++PN
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK--MKPNRV 431
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +S+L +CA L L LGK +H + ++ ++ + GTAL+ +Y K G A+ F
Sbjct: 432 TLMSILPACADL---SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTF 488
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +D+ TWN++I+ A A+ MF +++ + + T V V+ ACA ++
Sbjct: 489 NRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLD 548
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G H ++ K ++D+ + G L A+ F D ++ A
Sbjct: 549 QG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Query: 245 CKIHG----AVDLCHEVGRRLLELQP 266
+G A+ H++ RL P
Sbjct: 608 YMQNGHAKEAISSFHQM--RLENFHP 631
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 7/189 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ A +F+ M KRDVV+W ++I G ++ EA+ F++M +
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ-----LV 224
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E + VS+L+ G+ + L + +HGY+ R + +V G LIDLY K G ++ A
Sbjct: 225 GVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVA 282
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF MV +D +W M++ A N E L +FD+MK +R N+++ V+ A A
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342
Query: 181 QLVELGLEL 189
+E G E+
Sbjct: 343 IDLEKGKEI 351
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71
D A +F++ + W S+I + R+ + EA+ ++ M+ + P++ T+ VL
Sbjct: 80 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG--LEPDKYTFTFVLK 137
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD 131
+C G +N L G HG I R + VF+G L+D+Y K+G L+RA VF M +D
Sbjct: 138 ACTGALN---LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
V WNAMI+ L+ + EA+ F M+ G+ + ++ + + + +EL
Sbjct: 195 VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N Y +LSSC L ++ V G+ + I T LI+LY + A
Sbjct: 31 NYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-------THLINLYSLFHKCDLAR 83
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF S WN+MI + + + EAL M+ M EKGL ++ TF VL AC A
Sbjct: 84 SVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGAL 143
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
++ G+ FH + + + + +VD+ + G L A+E MP
Sbjct: 144 NLQEGV-WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP 191
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K +D A +F+ + +R VSW ++I G +NGC +A+ +F M + V+
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM--QLENVK 360
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSV+ + A + + + +HGY +R + V++ TALID+Y K G + A
Sbjct: 361 PDSFTLVSVIPALADISDP---LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F S + V TWNAMI S+ K A+ +F+EMK G+ NE TF++VL+AC+ A
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E F SM + + P MEHYG +VDLLGRAG L EA F++ MP +P SV GA
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGACK+H V+L E +++ EL P+ +V+L+NI+A W +R AM + G+
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597
Query: 301 RKIPAYSLIE 310
+K P +S+I+
Sbjct: 598 QKTPGWSIIQ 607
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M RD V+W +++ G+ RNG A+ + M RP+ T VSVL +CA
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEG-ERPDSITLVSVLPACANA 174
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L ++ H + +R+ + V + TA++D Y K G + A VF M K+ +WN
Sbjct: 175 RA---LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194
AMI A N +EAL +F+ M E+G+ +++ +A L AC ++ G+ + H +L
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV-HELL 288
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ +A ++F+ M ++ VSW ++I+G+ +NG EA+ +F M+
Sbjct: 202 ILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEE----- 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T VSVL++ G L G +VH ++R + +V + ALI +Y K ++ A
Sbjct: 257 GVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF + + +WNAMI A N ++A+ +F M+ + ++ + T V+V+ A A
Sbjct: 317 SHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALA 374
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ S+L CA G L G+ VH + I TAL ++Y K A RVF
Sbjct: 61 TFTSLLKLCAA---RGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVF 117
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVL 174
M ++D WNA+++ A N + A+ M M+ E+G R + IT V+VL
Sbjct: 118 DRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 10/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD + A +F+ + R++V+W ++I G+ + GC +A+ F M+ V+
Sbjct: 223 MVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQE--RVK 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T S+LS+CA L G L GK+VH +I + I + F+ LID+Y K G L A
Sbjct: 281 PDEFTMASLLSACAQL---GSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHA 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F SM K+ WN MIS+LAS+ + EAL +F +M+ G + N IT +AVL AC
Sbjct: 338 RYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHG 397
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL++F+ L + V +EHYGC+VDLLGRAG L EA E + +M EP+ + G+
Sbjct: 398 GFVDEGLQIFNK-LDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMV 296
LLGAC++H ++ V +L L H Y++L+NI A ERW +A +R+ M
Sbjct: 457 LLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMA 516
Query: 297 EAGIRKIPAYSLIE 310
G+ K P S +E
Sbjct: 517 RRGVEKTPGCSSLE 530
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 15/253 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY GDMD A+ LF M V+W ++I GF G EA F+
Sbjct: 128 LLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFE-------ATP 180
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
P T V+ G V G + ++V + RN F+ ++++ Y K G E
Sbjct: 181 PGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARN-----AFVWSSMVTGYFKAGDAEE 235
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF + +++ WNA+I+ A ++AL F M ++ ++ +E T ++L+ACA+
Sbjct: 236 ARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQ 295
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G ++ H + + + ++D+ + G L+ A+ SM ++ +
Sbjct: 296 LGSLEQGKKV-HDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWK-NNECWN 353
Query: 240 ALLGACKIHGAVD 252
++ A HG D
Sbjct: 354 TMISALASHGQSD 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D W ++ + EA V+ + R + + VL A + L L
Sbjct: 19 DPDKWAHLVKEYASQSLVREAALVYARNLPR----RTHHQPLLPVLLKAAAASSPAELGL 74
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
GK +H L++ + +GT ++ +Y K G L A R F M ++V ++NA+++ A
Sbjct: 75 GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAV 134
Query: 145 NSREKEALVMFDEMK 159
AL +F M+
Sbjct: 135 AGDMDGALALFGGMR 149
>gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 188/310 (60%), Gaps = 8/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G++++A ++F R++ SW +I+ F +N A+ +F ++
Sbjct: 542 LITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIE-----FE 596
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V +LS+C L G L GKQ+HG+++R+ + + F+ AL D+Y G L+ A
Sbjct: 597 PNEITIVGILSACTQL---GVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTA 653
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F+S + V WN+MIS+ +S +A+ +F EM+E G R + TF+++L+AC+ +
Sbjct: 654 FQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHS 713
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GL + +ML F V EH+ C+VD+LGRAG L EA EF+R MP +P+ V GA
Sbjct: 714 GLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGA 773
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG + + EV L EL+P++ G Y+ LSN++ RW A +LR+ + + G+
Sbjct: 774 LLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGL 833
Query: 301 RKIPAYSLIE 310
+K AYSLI+
Sbjct: 834 KKPAAYSLID 843
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + D S+ LF+ +L RDV+ W ++I V N CFG A+ +F +MG V
Sbjct: 54 LLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG--VG 111
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T + V+S+ + + G L G+ +HG + ++ F+ ALID+Y K G L +
Sbjct: 112 LDSTTLLIVVSASSHM---GNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 168
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF M +D+ +WN+M+ A N+ K++L F +M +A+ ++ ++A A
Sbjct: 169 ECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASA 226
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 128/259 (49%), Gaps = 16/259 (6%)
Query: 5 YVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y+ GD+ + L + + D+V W +++ G +NG F EA+ F M + ++ +
Sbjct: 443 YINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSV 502
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
A + +V+S+C L L+ G +HG L+ + + + ALI +YG+ G +E A +
Sbjct: 503 ALF-NVISACGNL---ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARII 558
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F +++C+WN MIS+ + N + AL +F ++ NEIT V +L+AC + ++
Sbjct: 559 FGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIE---FEPNEITIVGILSACTQLGVL 615
Query: 184 ELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
G ++ H + + + + + D+ G L A + +S P E + +++
Sbjct: 616 RHGKQIHGHVIRSRLQGNSFVS--AALEDMYSNCGRLDTAFQIFQSSP-ERSVAAWNSMI 672
Query: 243 GACKIHG----AVDLCHEV 257
A H A++L HE+
Sbjct: 673 SAFGFHSNGGKAIELFHEM 691
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G++ S+ +F M RD++SW S++ G N +++ FK M
Sbjct: 155 LIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA-----YS 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR---NEIVLSVFMGTALIDLYGKVGCL 117
+A VS+ + + G L G+ +HG+ ++ +I + F +LI LY + +
Sbjct: 210 SEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSF-ENSLISLYSQCRDI 268
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTA 176
+ A +FK M KD+ +WNAM+ LA N R EA + EM+ G ++ + +T V ++
Sbjct: 269 QAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPL 328
Query: 177 CARAQLVELG 186
CA L+ G
Sbjct: 329 CAELMLLREG 338
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 26/186 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + D+ +A +LF+ M +D+VSW ++++G N EA + M + V+
Sbjct: 258 LISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQ-LLGCVQ 316
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V ++ CA L+ L G+ VHG LR E+ L + +LID+Y K ++RA
Sbjct: 317 PDSVTVVIIIPLCAELML---LREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
N +EA +F ++ + + + T +A+L +C +
Sbjct: 374 ----------------------EHNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSS 411
Query: 181 QLVELG 186
+ ++ G
Sbjct: 412 EFLQFG 417
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+L+ Y + + +F ++ +DV WNAMI++ N A+ +F E+ +G+
Sbjct: 52 TSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVG 111
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEA 222
+ T + V++A + + G + H + F+ + + + C ++D+ + G LS +
Sbjct: 112 LDSTTLLIVVSASSHMGNLTQG-RVLHGI--SFKTGLLSDSFLCNALIDMYAKCGELSSS 168
Query: 223 K 223
+
Sbjct: 169 E 169
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G ++ A L+F+ M ++D+V W+++I+G+ + EA+ +F M V ++
Sbjct: 20 MISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM--QVFGIK 77
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T +SV+S+CA L G L K +H Y+ +N + ++ + ALID+Y K G L A
Sbjct: 78 PDQVTILSVISACARL---GVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAA 134
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M ++V +W +MI++ A + AL F +MK++ ++ N +TFV VL AC+ A
Sbjct: 135 RGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHA 194
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM + + P EHYGC+VDL GRA LL +A E + +MP P+ + G+
Sbjct: 195 GLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGS 254
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC+IHG +L +++LEL+P H G V LSNI+A RW +LR M + GI
Sbjct: 255 LMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGI 314
Query: 301 RKIPAYSLIE 310
K S IE
Sbjct: 315 SKERGCSRIE 324
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 94 RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153
RN +VL TA+I Y +VG +E A +F M KD+ W+AMIS A + + +EAL
Sbjct: 12 RNLVVL-----TAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALN 66
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+F EM+ G++ +++T ++V++ACAR +++ + H + K + + ++D+
Sbjct: 67 LFSEMQVFGIKPDQVTILSVISACARLGVLDRA-KWIHMYVDKNGLGGALPVNNALIDMY 125
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G L A+ M S +++ A IHG
Sbjct: 126 AKCGNLGAARGVFEKMQSRNVIS-WTSMINAFAIHG 160
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +++ AMIS + R ++A ++FD+M+EK L + + A+++ A
Sbjct: 2 AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDL----VCWSAMISGYAE 57
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ + L LF S + F + P V+ R G+L AK
Sbjct: 58 SDKPQEALNLF-SEMQVFGIKPDQVTILSVISACARLGVLDRAK 100
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +D A ++F+ K+D+V WT++I+ +V + EA+ VF+ M + ++
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC--CSGIK 341
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + SV+S+CA L G L K VH I N + + + ALI++Y K G L+
Sbjct: 342 PDVVSMFSVISACANL---GILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDAT 398
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M ++V +W++MI++L+ + +AL +F MK++ + NE+TFV VL C+ +
Sbjct: 399 RDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHS 458
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F SM ++ + P +EHYGC+VDL GRA LL EA E + SMP + + G+
Sbjct: 459 GLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGS 518
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC+IHG ++L +R+LEL+P H G V++SNI+A +RW ++R+ M E +
Sbjct: 519 LMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578
Query: 301 RKIPAYSLIE 310
K S I+
Sbjct: 579 FKEKGLSRID 588
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 127/280 (45%), Gaps = 38/280 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+D Y G ++ A +F+ M RDVV+W ++I + R G EA +F+ M + V
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSN--VM 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E +++S+C G + + ++ +++ N++ + + TAL+ +Y GC++ A
Sbjct: 210 PDEMILCNIVSACG---RTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMA 266
Query: 121 IRVFKSMVI-------------------------------KDVCTWNAMISSLASNSREK 149
F+ M + KD+ W MIS+ + +
Sbjct: 267 REFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F+EM G++ + ++ +V++ACA +++ + HS + + + +
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNAL 385
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+++ + G L ++ MP + +++ A +HG
Sbjct: 386 INMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHG 424
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R ++ +++ +L + + + L+ G ++HG + + F+ T +D+Y G +
Sbjct: 108 RLDQFSFLPILKAVSKV---SALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINY 164
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M +DV TWN MI EA +F+EMK+ + +E+ +++AC R
Sbjct: 165 ARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 224
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ ++ ++ +V +V + AG + A+EF R M
Sbjct: 225 TGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 184/311 (59%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A +FE + +DV++W SII+G+ +NG EA+ +F M + V
Sbjct: 379 LVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDS--VY 436
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T VSVLS+CA + G +G +HGY ++ ++ SV++GTAL++ Y K G E
Sbjct: 437 PDAITLVSVLSACASV---GAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAES 493
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F M K+ TW+AMI +L +F +M ++ L NE+ F +L+AC+
Sbjct: 494 ARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSH 553
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ ++ G F++M + VP M+HY C+VDLL RAG L EA +F+ +P +PD S+LG
Sbjct: 554 SGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLG 613
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
A L C++H DL RR+LEL P YV++SN++A RW++A + + M + G
Sbjct: 614 AFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRG 673
Query: 300 IRKIPAYSLIE 310
+ K+P +SL++
Sbjct: 674 LAKLPGWSLVD 684
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 37/282 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K +++ + +F+ +L R+VV WTS+I G+V+N C E + +F M LV
Sbjct: 178 LVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRM--REGLVE 235
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T S++++C L G L+ GK VHGY++++ L+ F+ T L+DLY K G + A
Sbjct: 236 GNQYTLGSLVTACTKL---GALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDA 292
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + D+ +W AMI A +EAL +F + + K L N +T +VL+ACA+
Sbjct: 293 FSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQT 352
Query: 181 QLVELG---------------------LELFHS--MLGK----FEVVPIME--HYGCVVD 211
+ +G ++++ M+G FE V + + ++
Sbjct: 353 GSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 412
Query: 212 LLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGA 250
+ G EA E MRS PDA L ++L AC GA
Sbjct: 413 GYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGA 454
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 10/191 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+ A +F+ + D+VSWT++I G+ + G EA+ +F + L
Sbjct: 279 LLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLL-- 336
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVH--GYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T SVLS+CA G L +G+ VH G L +E AL+D+Y K +
Sbjct: 337 PNTVTTSSVLSACA---QTGSLNMGRSVHCLGIKLGSE---DATFENALVDMYAKCHMIG 390
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF+++ KDV WN++IS N EAL +FD+M+ + + IT V+VL+ACA
Sbjct: 391 DARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACA 450
Query: 179 RAQLVELGLEL 189
+G L
Sbjct: 451 SVGAYRVGSSL 461
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 13/213 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y G ++ A L+F+ + D+ SW +I + N + E I F N L
Sbjct: 77 LVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSE-IVQFYNTRLRKCLNE 135
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + VL +C+ L G+++H I++ S F+ T L+D+Y K +E +
Sbjct: 136 YDNVVFSIVLKACSELRETDE---GRKLHCQIVKVGSPDS-FVLTGLVDMYAKCREVEDS 191
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF ++ ++V W +MI N KE LV+F+ M+E + N+ T +++TAC +
Sbjct: 192 RRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKL 251
Query: 181 QLVELGLELFHSM-------LGKFEVVPIMEHY 206
+ G + H L F V P+++ Y
Sbjct: 252 GALHQG-KWVHGYVIKSGFDLNSFLVTPLLDLY 283
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y GD+D++ +F+ + + VV++ +II RN EA+ +F+ + + L +
Sbjct: 153 LINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQ-EIGL-K 210
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T + VLSSCA L G L LG+ +H Y+ + V + T LID+Y K G L+ A
Sbjct: 211 PTDVTMLVVLSSCALL---GSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDA 267
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF+ M +D W+A+I + A++ +A+ M +EMK++ ++ +EITF+ +L AC+
Sbjct: 268 VNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHN 327
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G E FH M ++ +VP ++HYGC+VDLLGRAG L EA +F+ +P +P +
Sbjct: 328 GLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRT 387
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG V++ V R+ EL H G YV+ SN+ A +W+ LRK M++ G
Sbjct: 388 LLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGA 447
Query: 301 RKIPAYSLIE 310
KIP S IE
Sbjct: 448 VKIPGCSSIE 457
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 28/260 (10%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
M+ A LF+ + + ++V + ++ G+ R I F+ + V+ V+
Sbjct: 77 MEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVK---------- 126
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
L GKQ+H + ++ + ++++ LI++Y G ++ + RVF +
Sbjct: 127 ----------ALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEP 176
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
V +NA+I SLA N+R EAL +F E++E GL+ ++T + VL++CA ++LG
Sbjct: 177 CVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG-RWM 235
Query: 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG- 249
H + K+ ++ ++D+ + G L +A R MP + D A++ A HG
Sbjct: 236 HEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYATHGD 294
Query: 250 ---AVDLCHEVGRRLLELQP 266
A+ + +E+ + ++QP
Sbjct: 295 GFQAISMLNEMKKE--KVQP 312
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M A +F+ M +D V+W +++ G+ NG EA+ +F M ++P
Sbjct: 669 VDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG--MKP 726
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ LS+C L G L LG+Q + +E + + +GTALID+Y K G A
Sbjct: 727 DCYAVAGALSACTRL---GALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 783
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M KD+ WNAMI L EK A + +M++ G++ N+ TF+ +L +C
Sbjct: 784 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 843
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G FH+M + + P +EHYGC+VDLL RAGLL EA + + MP +A +LGAL
Sbjct: 844 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 903
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH +L V ++L+ L+P + G YV+LSNI++ RW A LR M G+
Sbjct: 904 LGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 963
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 964 KVPACSWVE 972
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 5/184 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ M V WT++I ++ G EA+ V +N N +RP+
Sbjct: 571 YAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG--MRPDSF 628
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VL++CA + + L G+ V + + SVF+ TA +DLY K G + +A VF
Sbjct: 629 TAVRVLTACARIAD---LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 685
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD W AM+ ASN +EAL +F M+ +G++ + L+AC R ++
Sbjct: 686 DKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALD 745
Query: 185 LGLE 188
LG +
Sbjct: 746 LGRQ 749
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ T L S + L + L G+Q+H L+ + + T+L+ LY K G L
Sbjct: 520 LPNPSHLTIPIALKSASRLPHP--LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 577
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF M W A+I++ +EA+ + G+R + T V VLTAC
Sbjct: 578 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC 637
Query: 178 ARAQLVELGLELFHS--MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AR + G ++ + G + V + VDL + G +++A+E M + DA
Sbjct: 638 ARIADLATGETVWRAAEQEGVAQSVFVAT---AAVDLYVKCGEMAKAREVFDKMRHK-DA 693
Query: 236 SVLGALLGACKIHG 249
GA++G +G
Sbjct: 694 VAWGAMVGGYASNG 707
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M K+D++ W ++I G G A + M + V+
Sbjct: 769 LIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM--EKSGVK 826
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GL+ +G Y Y I + ++DL + G L+
Sbjct: 827 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLY----HISPRIEHYGCMVDLLSRAGLLQ 882
Query: 119 RAIRVFKSM 127
A ++ M
Sbjct: 883 EAHQLVDDM 891
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 187/303 (61%), Gaps = 6/303 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G+++ A LF + RD+VSW S+I+G+ +NG + C+F M V+
Sbjct: 301 IIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAEN--VK 358
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V+++S+ A + G L G+ +HG ++ + F G+ALID+Y K G +ERA
Sbjct: 359 PDKVTIVNLISAVAEM---GALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERA 415
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV TW MI+ A + +AL +F M+ + + N++TFV+VL AC+ +
Sbjct: 416 FVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAET-KPNDVTFVSVLAACSHS 474
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL++F SM ++ + P +EHYGC+VDLL R+G L +A + MP EP S+ GA
Sbjct: 475 GLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGA 534
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H ++L LL+L+P+ G Y++LSN++A RW+ + +R+ M G+
Sbjct: 535 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 594
Query: 301 RKI 303
+KI
Sbjct: 595 KKI 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 53/299 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV NG + A LF+ M R+VVS+ ++I GF + G + +F +M + +
Sbjct: 169 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHG--LE 226
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +L C L LGK VH I ++ ++ + AL+D+Y K L+ A
Sbjct: 227 PDDFTMLGLLLLCGQLGETK---LGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 283
Query: 121 IRVFKSMVIKDVCTW-------------------------------NAMISSLASNSREK 149
+VF + KD +W N++IS A N
Sbjct: 284 RKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 343
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH----SMLGKFEVVPIMEH 205
+F M + ++ +++T V +++A A ++ G H ML K E
Sbjct: 344 TVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG-RWIHGLAVKMLTKIEAFS---- 398
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++D+ + G + A +P E D + ++ HG G + LEL
Sbjct: 399 GSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAFHG-------FGNKALEL 449
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 116/256 (45%), Gaps = 16/256 (6%)
Query: 10 DMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
+++ AILLF + ++ + ++I GF + +A ++++M+ N P+ T++
Sbjct: 80 NLELAILLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNGTY--PDRQTFLY 135
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L + + ++ V G + + E ++ +LI Y GC E A ++F M
Sbjct: 136 LLQTTKFVAEVKQIHCHALVFGLLSKEE-----YLRNSLIKRYVDNGCFECARQLFDEMS 190
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++V ++N MI A L +F +M+ GL ++ T + +L C + +LG
Sbjct: 191 DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKS 250
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA----SVLGALLGA 244
+ H+ + K + Y ++D+ + L A++ P E D +++
Sbjct: 251 V-HAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKV 308
Query: 245 CKIHGAVDLCHEVGRR 260
++ A DL +++ R
Sbjct: 309 GELELACDLFNQIPTR 324
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + SA +F M ++VVSWT+++ G+ +NG EA+ +F +M N +
Sbjct: 315 LVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG--IE 372
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L L G Q H L + ++ + + AL+ LYGK G +E +
Sbjct: 373 PDDFTLGSVISSCANL---ASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDS 429
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M D +W A++S A + E L +F+ M G + +++TF+ VL+AC+RA
Sbjct: 430 HRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRA 489
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++F SM+ + ++PI +HY C++DL RAG L EA++F+ MPF PDA +
Sbjct: 490 GLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWAS 549
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ H +++ LL+L+P + Y++LS+I+A +W +LRK M + G+
Sbjct: 550 LLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGL 609
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 610 RKEPGCSWIK 619
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 134/237 (56%), Gaps = 8/237 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
+I G ++ ++ + LF +M ++D +SWT++I GF +NG EAI +F+ M + N+ +
Sbjct: 214 LIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEM- 272
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
++ T+ SVL++C G++ L GKQVH YI+R + ++F+G+AL+D+Y K ++
Sbjct: 273 --DQYTFGSVLTACGGVM---ALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKS 327
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF+ M K+V +W AM+ N +EA+ +F +M+ G+ ++ T +V+++CA
Sbjct: 328 AETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCAN 387
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G + FH ++ + +V L G+ G + ++ M + + S
Sbjct: 388 LASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS 443
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 122/260 (46%), Gaps = 40/260 (15%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNLVRPNEATYVSVLSSCA 74
+F M RD+VSW S+I+ + G +++ + M+ G NL R +T + +L+S
Sbjct: 97 VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTML-ILAS-- 153
Query: 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC------------------ 116
+G ++LG QVHG++++ VF+G+ L+D+Y K G
Sbjct: 154 ---KQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVM 210
Query: 117 -------------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
+E + ++F M KD +W AMI+ N ++EA+ +F EM+ + L
Sbjct: 211 YNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENL 270
Query: 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
++ TF +VLTAC ++ G ++ H+ + + + + +VD+ + + A+
Sbjct: 271 EMDQYTFGSVLTACGGVMALQEGKQV-HAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAE 329
Query: 224 EFMRSMPFEPDASVLGALLG 243
R M + S L+G
Sbjct: 330 TVFRKMNCKNVVSWTAMLVG 349
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+++ L+ Y K+ CL RVF +M +D+ +WN++IS+ A +++ ++ M
Sbjct: 74 NLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLML 133
Query: 160 EKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218
G N I +L ++ V LGL++ H + KF + +VD+ + GL
Sbjct: 134 YNGPFNLNRIALSTMLILASKQGCVHLGLQV-HGHVVKFGFQSYVFVGSPLVDMYSKTGL 192
Query: 219 LSEAKEFMRSMP 230
+ A++ MP
Sbjct: 193 VFCARQAFDEMP 204
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 187/303 (61%), Gaps = 6/303 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G+++ A LF + RD+VSW S+I+G+ +NG + C+F M V+
Sbjct: 236 IIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAEN--VK 293
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T V+++S+ A + G L G+ +HG ++ + F G+ALID+Y K G +ERA
Sbjct: 294 PDKVTIVNLISAVAEM---GALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERA 350
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KDV TW MI+ A + +AL +F M+ + + N++TFV+VL AC+ +
Sbjct: 351 FVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAET-KPNDVTFVSVLAACSHS 409
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ GL++F SM ++ + P +EHYGC+VDLL R+G L +A + MP EP S+ GA
Sbjct: 410 GLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGA 469
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+L AC++H ++L LL+L+P+ G Y++LSN++A RW+ + +R+ M G+
Sbjct: 470 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 529
Query: 301 RKI 303
+KI
Sbjct: 530 KKI 532
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 53/299 (17%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YV NG + A LF+ M R+VVS+ ++I GF + G + +F +M + +
Sbjct: 104 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHG--LE 161
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T + +L C L LGK VH I ++ ++ + AL+D+Y K L+ A
Sbjct: 162 PDDFTMLGLLLLCGQLGETK---LGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLA 218
Query: 121 IRVFKSMVIKDVCTW-------------------------------NAMISSLASNSREK 149
+VF + KD +W N++IS A N
Sbjct: 219 RKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 278
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH----SMLGKFEVVPIMEH 205
+F M + ++ +++T V +++A A ++ G H ML K E
Sbjct: 279 TVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQG-RWIHGLAVKMLTKIEAFS---- 333
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++D+ + G + A +P E D + ++ HG G + LEL
Sbjct: 334 GSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAFHG-------FGNKALEL 384
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 116/256 (45%), Gaps = 16/256 (6%)
Query: 10 DMDSAILLFENMLK-RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
+++ AILLF + ++ + ++I GF + +A ++++M+ N P+ T++
Sbjct: 15 NLELAILLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNGTY--PDRQTFLY 70
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L + + ++ V G + + E ++ +LI Y GC E A ++F M
Sbjct: 71 LLQTTKFVAEVKQIHCHALVFGLLSKEE-----YLRNSLIKRYVDNGCFECARQLFDEMS 125
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
++V ++N MI A L +F +M+ GL ++ T + +L C + +LG
Sbjct: 126 DRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKS 185
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA----SVLGALLGA 244
+ H+ + K + Y ++D+ + L A++ P E D +++
Sbjct: 186 V-HAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PMEKDTVSWNTIIAGYAKV 243
Query: 245 CKIHGAVDLCHEVGRR 260
++ A DL +++ R
Sbjct: 244 GELELACDLFNQIPTR 259
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K G+ + A+ +F+ M+ D + W SII GF +N A+ +FK M +
Sbjct: 200 LIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAE 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+AT SVL +C GL L LG Q H +I++ + + + AL+D+Y K G LE A
Sbjct: 260 --QATLTSVLRACTGL---ALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF M +DV TW+ MIS LA N +EAL +F+ MK G + N IT V VL AC+ A
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F SM + + P+ EHYGC++DLLG+AG L +A + + M EPDA
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ + L ++++ L P+ G Y +LSNI+A ++W+ ++R M + GI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 493 KKEPGCSWIE 502
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK ++ A LF+ M +R+V+SWT++I+ + + +A+ + M+ + VR
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN--VR 159
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY SVL SC G+ + L+ G I++ + VF+ +ALID++ K+G E A
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCG------IIKEGLESDVFVRSALIDVFAKLGEPEDA 213
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF MV D WN++I A NSR AL +F MK G A + T +VL AC
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+ELG++ H + K++ I+ + +VD+ + G L +A M
Sbjct: 274 ALLELGMQA-HVHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQM 319
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ ATY ++ C ++ ++ G + ++ N +F+ LI++Y K L A
Sbjct: 60 DSATYSELIKCC---ISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAH 116
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++F M ++V +W MIS+ + ++AL + M +R N T+ +VL +C
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC 172
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 181/311 (58%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+DSA LF+ + +D++ + ++I + +N EA+ +F NM+ V+
Sbjct: 273 MISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQ 332
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SV+S+C+ L G L G + Y+ R I + + TAL+DLY K G +++A
Sbjct: 333 PDEMTLASVISACSQL---GDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKA 389
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ + AMI N + +A+ +FDEM + + N ITF+ +LTA A
Sbjct: 390 YELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHA 449
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM K+ +VP ++HYG +VDL GRAG L EA E ++SMP +P A V GA
Sbjct: 450 GLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGA 508
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+ + EL+P G +LSNI+A ERW+ LRK E G
Sbjct: 509 LLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGF 568
Query: 301 RKIPAYSLIEA 311
KIP S +E+
Sbjct: 569 SKIPGCSWMES 579
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K+GD+ A +F+ + ++DV+SW S+I+G+ R G +A +F+ M
Sbjct: 180 MLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQM-------- 231
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E + S + +G V G + + + + V + M I Y K G ++ A
Sbjct: 232 -PERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTM----ISGYSKCGDVDSA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACA 178
+F + KD+ +NAMI+ A NSR EAL +F+ M ++ +E+T +V++AC+
Sbjct: 287 CELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACS 346
Query: 179 RAQLVELG--LELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
+ + G +E + LG + + H ++DL + G + +A E + + D
Sbjct: 347 QLGDLRFGPWIESYMRRLG----IEMDGHLATALLDLYAKCGSIDKAYELFHGLR-KKDL 401
Query: 236 SVLGALLGACKIHG-AVD 252
A++ C I+G A+D
Sbjct: 402 VAYTAMILGCGINGKAID 419
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D SW I ++G F EA ++ M L P S L +CA + G
Sbjct: 69 DSFSWACAIRFSTQHGQFKEAFALYVQMQ-RWGLC-PTTFALSSALKACARIAYRMG--- 123
Query: 85 GKQVHGYILRNEIVLS---VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
G +HG + + +++ TAL+D Y K+G +E A ++F M ++V +WN+M++
Sbjct: 124 GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 183
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ A +FDE+ +K + I++ ++++ ARA +E LF M +
Sbjct: 184 YLKSGDLVVAQRVFDEIPQKDV----ISWNSMISGYARAGDMEKASSLFQQMPER----- 234
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK---IHGAVDLCHEVG 258
+ ++ G + A+ F +MP + + S + + G K + A +L +VG
Sbjct: 235 NFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVG 294
Query: 259 RRLLEL 264
+ L L
Sbjct: 295 GKDLLL 300
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 185/306 (60%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ G +A +LF+ M R +VSW +I G+ +NG EAI +F+ M+ + ++P E
Sbjct: 453 YICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG--IQPYEI 510
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V +C+ L L LGK++H + L+ + +F+ +++ID+Y K GC+ + R+F
Sbjct: 511 AIMCVCGACSQL---SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 567
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ KDV +WN +I+ + R KEAL +F++M GL+ ++ TF +L AC+ A LVE
Sbjct: 568 DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE 627
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
GLE F+ ML + P +EHY CVVD+LGRAG + +A + MP +PD+ + +LL +
Sbjct: 628 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 687
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+IHG + L +V +LLEL+P+ YV++SN+ AG +W+ +R M + G++K
Sbjct: 688 CRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDA 747
Query: 305 AYSLIE 310
S IE
Sbjct: 748 GCSWIE 753
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 124/225 (55%), Gaps = 7/225 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G + ++F+ + ++++ W +I++ + RN F +A+ +F ++ +V +
Sbjct: 40 IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI-SVTEHK 98
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V+ +CAGL++ G LG+ +HG + ++V VF+G ALI +YGK G +E A
Sbjct: 99 PDNFTLPCVIKACAGLLDLG---LGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 155
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTACA 178
++VF+ M +++ +WN++I + N +E+ F EM E+ + T V VL CA
Sbjct: 156 VKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCA 215
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223
+ +E G+ + H + K + + ++D+ + LSEA+
Sbjct: 216 GEEDIEKGMAV-HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQ 259
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + A LLF+ K+++VSW S+I G+ R + + M ++
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+E T ++VL C + L K++HGY R+ + + + A I Y + G L +
Sbjct: 305 ADEFTILNVLPVC---LERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS 361
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M K V +WNA++ A NS ++AL ++ +M + GL + T ++L AC+R
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421
Query: 181 QLVELGLEL 189
+ + G E+
Sbjct: 422 KSLHYGEEI 430
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G ++ A+ +FE+M +R++VSW SII GF NG E+ F+ M+
Sbjct: 142 LIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFV 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ AT V+VL CAG E + G VHG ++ + + + +LID+Y K L A
Sbjct: 202 PDVATLVTVLPVCAG---EEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA 258
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK--EKGLRANEITFVAVLTAC- 177
+F K++ +WN+MI A + +M+ + ++A+E T + VL C
Sbjct: 259 QLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCL 318
Query: 178 ARAQLVEL 185
R++L L
Sbjct: 319 ERSELQSL 326
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 129/264 (48%), Gaps = 7/264 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y + G + S+ +F+ M + V SW +++ G+ +N +A+ ++ M + +
Sbjct: 348 FIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG--LD 405
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T S+L +C+ + + L+ G+++HG+ LRN + + F+G +L+ LY G A
Sbjct: 406 PDWFTIGSLLLACSRMKS---LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAA 462
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + + +WN MI+ + N EA+ +F +M G++ EI + V AC++
Sbjct: 463 QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL 522
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG EL H K + + ++D+ + G + ++ + E D +
Sbjct: 523 SALRLGKEL-HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNV 580
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL 264
++ IHG E+ ++L L
Sbjct: 581 IIAGYGIHGRGKEALELFEKMLRL 604
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G + + +F+ + ++DV SW II G+ +G EA+ +F+ M+ + L +
Sbjct: 550 IIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML-RLGL-K 607
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P++ T+ +L +C AGLV +G Y + ++ L N I + T ++D+ G+ G ++
Sbjct: 608 PDDFTFTGILMACSHAGLVEDGLEYFNQMLN---LHN-IEPKLEHYTCVVDMLGRAGRID 663
Query: 119 RAIRVFKSMV-IKDVCTWNAMISS 141
A+R+ + M D W++++SS
Sbjct: 664 DALRLIEEMPGDPDSRIWSSLLSS 687
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 84 LGKQVHGYILRNEIVLSVF-MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
+G+++H + + + F + T +I +Y G + VF + K++ WNA++S+
Sbjct: 16 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75
Query: 143 ASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGL-ELFHSMLGKFEVV 200
N ++A+ +F E+ + + T V+ AC A L++LGL ++ H M K ++V
Sbjct: 76 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLV 133
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ++ + G+ GL+ EA + MP
Sbjct: 134 SDVFVGNALIAMYGKCGLVEEAVKVFEHMP 163
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 178/298 (59%), Gaps = 11/298 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +R+VVSW SI+ V NG F M+G P+E T V +LS+C G
Sbjct: 170 VFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGK--RFCPDETTMVVLLSACGG- 226
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L LGK VH ++ E+ L+ +GTAL+D+Y K G LE A VF+ MV K+V TW+
Sbjct: 227 ----NLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWS 282
Query: 137 AMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
AMI LA +EAL +F +M KE +R N +TF+ VL AC+ LV+ G + FH M
Sbjct: 283 AMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEK 342
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD--- 252
++ P+M HYG +VD+LGRAG L+EA +F++ MPFEPDA V LL AC IH D
Sbjct: 343 IHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEG 402
Query: 253 LCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ +V +RL+EL+PK G V+++N A W A ++R+ M E ++KI S +E
Sbjct: 403 IGEKVKKRLIELEPKRSGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLE 460
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
+W + G+ + E+I V+ M ++PN+ T+ +L +CA + GL G+Q
Sbjct: 80 TWNMLSRGYSSSDSPVESIWVYSEM--KRRGIKPNKLTFPFLLKACASFL---GLTAGRQ 134
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+ +L++ V++G LI LYG A +VF M ++V +WN+++++L N +
Sbjct: 135 IQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGK 194
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTAC 177
F EM K +E T V +L+AC
Sbjct: 195 LNLVFECFCEMIGKRFCPDETTMVVLLSAC 224
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G ++ A L+FE M+ ++V +W+++I G + G EA+ +F MM + VR
Sbjct: 253 LVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESS-VR 311
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T++ VL +C+ GLV++G Y H ++I + A++D+ G+ G L
Sbjct: 312 PNYVTFLGVLCACSHTGLVDDGYKYF----HEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 119 RAIRVFKSMVIK-DVCTWNAMISSLASNSREKE 150
A K M + D W ++S+ + + E +
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDD 400
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 187/308 (60%), Gaps = 8/308 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+ K G+ + A L+F+ M++RDV+SW S+++G+ +NG EA+ +F M + +P
Sbjct: 104 HTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSD--CQPTPV 161
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T + ++S+CA L G +LG++ H +I+ + + + + AL+D+Y K G LE+A+ +F
Sbjct: 162 TALIMVSACAYL---GFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLF 218
Query: 125 KSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182
+ ++ +WN +IS + KEAL +F M+E+G+ N TF ++L+AC+ A L
Sbjct: 219 NGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGL 278
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
++ G + F M + V +H+ CVVD+LGRAGLL EA + ++ MP P V GALL
Sbjct: 279 IDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALL 337
Query: 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302
ACKIHG ++L LL+L+P H G YV++SNI+A +W LR+ M G++K
Sbjct: 338 LACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKK 397
Query: 303 IPAYSLIE 310
A+S+IE
Sbjct: 398 PAAFSMIE 405
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 9/282 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +F+ M +D+V WT++I + + EA+ +FK M L+ A
Sbjct: 2 YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLL----A 57
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++V+S + + G + VHGY R ++ + +G +++ ++ K G E+A VF
Sbjct: 58 DSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVF 117
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ +DV +WN+M+S N + EAL++FDEM++ + +T + +++ACA
Sbjct: 118 DMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRH 177
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLG 243
LG + FH + + ++D+ + G L +A + + P E +A L+
Sbjct: 178 LGRK-FHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLIS 236
Query: 244 ACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
+HG E+ R+ E ++P H +LS HAGL
Sbjct: 237 GYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGL 278
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++D Y K GD++ A+ LF + +R+ SW +I+G+ +G EA+ +F M
Sbjct: 201 LMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEG-- 258
Query: 59 VRPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V PN T+ S+LS+C AGL++E G++ + R + L ++D+ G+ G
Sbjct: 259 VEPNHFTFTSILSACSHAGLIDE-----GRKCFAEMKRLSVTLEDKHHACVVDMLGRAGL 313
Query: 117 LERAIRVFKSM 127
L+ A + K M
Sbjct: 314 LQEAFDLIKEM 324
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEI 168
+Y K G ++F M KD+ W AMI++ + +EAL++F +M +E+GL A+ I
Sbjct: 1 MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60
Query: 169 TFVAVLTACAR 179
V+V +A +
Sbjct: 61 AVVSVASAVGQ 71
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D +++GD+D+A +F M +R+ VSW +II+GF RNG A+ +F M L
Sbjct: 136 LLDALIRDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLA- 194
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT V +S+ + G L +GK HGY+LR E L +G AL+ +Y + G + A
Sbjct: 195 PDEATMVGFVSAVRDI---GLLAIGKSAHGYVLRREFSLDGPLGVALVSMYTRCGSMGAA 251
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F S+ K+V W ++I+ A++ + + AL +F EM++ G+ N +TFVAVL+AC+
Sbjct: 252 HSCFLSVTTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVGIEPNGVTFVAVLSACSHG 311
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F ++ + P+++HYGC+VDLLGRAG L EA ++P +P + +
Sbjct: 312 GLVDEGFKYF-DLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSS 370
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+ HG V++ +L E +P H YV+LSN +A E+W + R+ M E +
Sbjct: 371 LLAACRSHGNVEMAELTASKLAEAKPSHGSSYVLLSNTYARAEQWEDSKRTRRRMEEHRV 430
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 431 AKKPGLSWIE 440
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---EIVLSV 101
++C F+ + + N A + L++CA L + + +Q+H ++++ V V
Sbjct: 43 SLCAFRAHHSAGHALHTNPA-LMPALAACARLPS--AVAEAEQIHALLVKSGGSRAVSHV 99
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
T+LI Y ++G + A +VF M + V TWN ++ +L + A +F +M ++
Sbjct: 100 QAFTSLIRAYARLGRVCDARKVFDGMADRTVVTWNVLLDALIRDGDLDAAWEVFVKMPQR 159
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
N +++ +++ AR + ++LF M + + P
Sbjct: 160 ----NAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAP 195
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 186/307 (60%), Gaps = 6/307 (1%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
G+++NGD++SA +F + +R+ V W ++I+G V+ F +AI +F+ M G ++ +
Sbjct: 408 GFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG--IKADR 465
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T + + S+C L G L K VH YI +N I + + TAL+D++ + G + A++V
Sbjct: 466 VTMMGIASACGYL---GAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQV 522
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F M +DV W A I ++A + A +F++M +G++ + + FV VLTAC+ V
Sbjct: 523 FNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQV 582
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
E GL +F S++ + P +EHYGC+VDLLGRAGLL EA + ++SMP EP+ V G+LL
Sbjct: 583 EQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLA 641
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC++H V++ R+ EL P+ G +V+LSNI+A +W +R + E G+RK+
Sbjct: 642 ACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKV 701
Query: 304 PAYSLIE 310
P S ++
Sbjct: 702 PGSSSVQ 708
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 38/280 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K G +D+A LF+ + R++V + +I++ + R G EA+ + M+ R
Sbjct: 273 LVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP--R 330
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +S +S+ A LV+ L+ GK HGY++RN + +G +ID+Y K G E A
Sbjct: 331 PDRVTMLSAISASAQLVD---LFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387
Query: 121 IRVFKSMVIKDVCTWNA-------------------------------MISSLASNSREK 149
RVF M K V +WN+ MIS L S +
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
+A+ +F EM+ +G++A+ +T + + +AC EL + H+ + K + M +
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA-KWVHTYIEKNGIPCDMRLNTAL 506
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
VD+ R G A + M E D S A +G + G
Sbjct: 507 VDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEG 545
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 7/185 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + G MD +FE M +R+VVSWTS+I G+ R EA+ +F M+ +R
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAG--IR 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T V V+S+CA L + L +G++V YI + L+ M AL+D+Y K G ++ A
Sbjct: 230 PSSVTMVCVISACAKLRD---LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAA 286
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F V +++ +N ++S+ A +EAL + DEM ++G R + +T ++ ++ A A
Sbjct: 287 KRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAIS--ASA 344
Query: 181 QLVEL 185
QLV+L
Sbjct: 345 QLVDL 349
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
Query: 11 MDSAILLFENMLKRDVVS------WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+D A FE + K DV S S+I G+ G EAI ++ M+ V V PN
Sbjct: 76 LDYARKAFE-LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRML--VLGVTPNHY 132
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ VLS C + G QVHG +++ + VF+ LI Y + G ++ +VF
Sbjct: 133 TFPFVLSGCTKI---AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ M ++V +W ++I A R KEA+ +F EM E G+R + +T V V++ACA+ + ++
Sbjct: 190 EGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLD 249
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225
+G E + +G+ + +VD+ + G + AK
Sbjct: 250 MG-ERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRL 289
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D + + GD SA+ +F M +RDV +WT+ I G A +F M+ + V+
Sbjct: 506 LVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQML--IQGVK 563
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +V VL++C+ + G + G + + + I + ++DL G+ G L A
Sbjct: 564 PDVVLFVQVLTACS---HGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREA 620
Query: 121 IRVFKSMVIK--DVCTWNAMISS 141
+ KSM ++ DV W +++++
Sbjct: 621 FDLIKSMPMEPNDV-VWGSLLAA 642
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A F M ++++SWT++I G+ +NGC EA+ VF M + +
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEM--QRDGID 370
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T SV+SSCA L + L G Q H L + ++ + + AL+ LYGK G +E A
Sbjct: 371 PDDFTLGSVISSCANLAS---LEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M+ D +W A+++ A R KE + +F++M K ++ + +TF+ VL+AC+RA
Sbjct: 428 HRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G FHSM +VPI +HY C++DL R+G L EA+EF++ MP PDA G
Sbjct: 488 GFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGT 547
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G +++ LLE+ P++ YV+L ++HA WN+ LR+ M + +
Sbjct: 548 LLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQV 607
Query: 301 RKIPAYSLIE 310
+K P S I+
Sbjct: 608 KKEPGCSWIK 617
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G ++ ++ A LFE M RD ++WT+++ GF +NG +A+ F+ M +
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM--RFQGIA 269
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ S+L++C L L GKQ+H YI+R +VF+G+AL+D+Y K ++ A
Sbjct: 270 IDQYTFGSILTACGAL---SALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPA 326
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M K++ +W A+I N +EA+ +F EM+ G+ ++ T +V+++CA
Sbjct: 327 ETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANL 386
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHY----GCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E G + FH + +V + HY +V L G+ G + +A M F S
Sbjct: 387 ASLEEGAQ-FHCL----ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS 441
Query: 237 VLGALLG 243
+ G
Sbjct: 442 WTALVTG 448
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 37/211 (17%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
DMDS LF +M +RD VS+ ++I GF G A+ ++ ++ + VRP+ T ++
Sbjct: 90 DMDS---LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAM 146
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL------------ 117
+ + + L G LG+Q H ILR ++ F+G+ L+ +Y K+G +
Sbjct: 147 VMAASAL---GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDG 203
Query: 118 -------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158
E A R+F+ M +D TW M++ N E +AL F M
Sbjct: 204 KNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM 263
Query: 159 KEKGLRANEITFVAVLTACARAQLVELGLEL 189
+ +G+ ++ TF ++LTAC +E G ++
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQI 294
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
+D YVK G+M A +F+ M +D V+W +++ G+ NG EA+ +F M ++P
Sbjct: 693 VDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEG--MKP 750
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ LS+C L G L LG+Q + +E + + +GTALID+Y K G A
Sbjct: 751 DCYAVAGALSACTRL---GALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAW 807
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF+ M KD+ WNAMI L EK A + +M++ G++ N+ TF+ +L +C
Sbjct: 808 VVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTG 867
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGAL 241
L++ G FH+M + + P +EHYGC+VDLL RAGLL EA + + MP +A +LGAL
Sbjct: 868 LIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGAL 927
Query: 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
LG CKIH +L V ++L+ L+P + G YV+LSNI++ RW A LR M G+
Sbjct: 928 LGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVE 987
Query: 302 KIPAYSLIE 310
K+PA S +E
Sbjct: 988 KVPACSWVE 996
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 5/184 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A +F+ M V WT++I ++ G EA+ V +N N +RP+
Sbjct: 595 YAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG--MRPDSF 652
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V VL++CA + + L G+ V + + SVF+ TA +DLY K G + +A VF
Sbjct: 653 TAVRVLTACARIAD---LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVF 709
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M KD W AM+ ASN +EAL +F M+ +G++ + L+AC R ++
Sbjct: 710 DKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALD 769
Query: 185 LGLE 188
LG +
Sbjct: 770 LGRQ 773
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
L P+ T L S + L + L G+Q+H L+ + + T+L+ LY K G L
Sbjct: 544 LPNPSHLTIPIALKSASRLPHP--LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 601
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RA RVF M W A+I++ +EA+ + G+R + T V VLTAC
Sbjct: 602 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC 661
Query: 178 ARAQLVELGLELFHS--MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AR + G ++ + G + V + VDL + G +++A+E M + DA
Sbjct: 662 ARIADLATGETVWRAAEQEGVAQSVFVAT---AAVDLYVKCGEMAKAREVFDKMRHK-DA 717
Query: 236 SVLGALLGACKIHG 249
GA++G +G
Sbjct: 718 VAWGAMVGGYASNG 731
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G A ++F+ M K+D++ W ++I G G A + M + V+
Sbjct: 793 LIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM--EKSGVK 850
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
N+ T++ +L SC GL+ +G Y Y I + ++DL + G L+
Sbjct: 851 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLY----HISPRIEHYGCMVDLLSRAGLLQ 906
Query: 119 RAIRVFKSM 127
A ++ M
Sbjct: 907 EAHQLVDDM 915
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN 57
+I Y + G ++ A +F+ ++ D VSW SI+ GF ++G +A+ F+NM
Sbjct: 242 IITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYV 301
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
++ + + +VL SC+ L L LG+QVH +L++ + F+ ++LI +Y K G +
Sbjct: 302 VI--DHYAFSAVLRSCSDLAT---LQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVI 356
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
E A + F + WN++I A + R K AL +F MK++ ++ + ITFVAVLTAC
Sbjct: 357 EDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTAC 416
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ LVE G SM + + P MEHY C++DLLGRAG L EAK + +MPFEPDA V
Sbjct: 417 SHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMV 476
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LLGAC+ G ++L +V LLEL+P+ YV+LS++ L RWN +++ M E
Sbjct: 477 WKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKE 536
Query: 298 AGIRKIPAYSLIE 310
G++K+P +S IE
Sbjct: 537 RGVKKVPGWSWIE 549
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY K G++ A +F +RD VSW ++I GFV G F A+ K+M V
Sbjct: 40 IISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAV- 98
Query: 61 PNEATYVSVLS--SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ ++ S+L +C G V +G+QVH +++ +VF G+AL+D+Y K +E
Sbjct: 99 -DGYSFGSILKGVACVGYVE-----VGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV----- 173
A VFKS+ I++ TWNA+IS A A + D M+ +G+ ++ TF +
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212
Query: 174 ------LTACARAQLVELGL 187
LT A++V+ GL
Sbjct: 213 DPDLHKLTTQVHAKIVKHGL 232
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 118/240 (49%), Gaps = 11/240 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K ++ A +F+++ R+ V+W ++I+G+ + G G A + M + V
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCM--ELEGVE 198
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ +L+ L QVH I+++ + + A+I Y + G +E A
Sbjct: 199 IDDGTFAPLLTLLDDPDLHK---LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDA 255
Query: 121 IRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
RVF + D +WN++++ + + ++AL F+ M+ + + + F AVL +C
Sbjct: 256 ERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSC 315
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ ++LG ++ H ++ K P ++ + + G++ +A++ + P D+S+
Sbjct: 316 SDLATLQLGQQV-HVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP--KDSSI 372
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
LY H +++ S++ +I Y K G + A ++F +D +WN MI+
Sbjct: 14 ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIA 73
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
+ + AL MK G + +F ++L A VE+G ++ HSM+ K
Sbjct: 74 GFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV-HSMMVKMGYE 132
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ ++D+ + + +A E +S+
Sbjct: 133 GNVFAGSALLDMYAKCERVEDAFEVFKSI 161
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 185/315 (58%), Gaps = 11/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENM----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
+I G+ + GD LF M + DV+SWTS+I+ FV+N A FK M+ +
Sbjct: 237 LISGFAQAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHG 296
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
PN AT S+L +CA L N + G+++HGY + +++ +A++D+Y K G
Sbjct: 297 --AYPNSATISSLLPACASLAN---VRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGL 351
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLT 175
+ A +F M + TWN+MI A++ EA+ +F++M K + + + ++F AVLT
Sbjct: 352 ISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLT 411
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC+ +LVELG LF M K+++VP +EHY C++DLLGRAG LSEA + +++MP EPD
Sbjct: 412 ACSHGRLVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDL 471
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
V GALLGAC+ HG +DL R L EL+P++ G ++LSN++A W L+
Sbjct: 472 FVWGALLGACRQHGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAGSWENVAKLKMGK 531
Query: 296 VEAGIRKIPAYSLIE 310
+RK AYS I+
Sbjct: 532 -RKRLRKFSAYSWIQ 545
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 13/250 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y + + LF+ + K + T +I + R+G + + + VF M +R
Sbjct: 70 LISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNE--RLR 127
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ SVL +C + + L GK +H ILR+ V + TALID+Y + +E+A
Sbjct: 128 PNKFVIPSVLRACGHVFD---LQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKA 184
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M KD+ NAM+ A N KE ++ ++M+ ++ N +T+ +++ A+A
Sbjct: 185 RKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQA 244
Query: 181 QLVELGLELFHSM-LGKFEVVPIMEHYGCVVDLL----GRAGLLSEAKEFMRSMPFEPDA 235
+ ELF M + FE P + + V+ + K+ ++ + P++
Sbjct: 245 GDKVMVQELFGLMSMHGFE--PDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAY-PNS 301
Query: 236 SVLGALLGAC 245
+ + +LL AC
Sbjct: 302 ATISSLLPAC 311
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
+ L GK +H ++ + + S + LI Y + L ++F + + +
Sbjct: 42 DHALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVL 101
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK-- 196
I + + + ++ L +F EM+ + LR N+ +VL AC ++ G ++ HS++ +
Sbjct: 102 IGAYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTG-KILHSVILRHL 160
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242
FE ++ ++D+ R + +A++ M E D L A++
Sbjct: 161 FESDVVVN--TALIDMYSRCRHVEKARKVFDGMQ-EKDLVALNAMV 203
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 186/315 (59%), Gaps = 10/315 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + +D A +F++M ++ VSWT+++ GFVRNG EA VFK M+ VR
Sbjct: 174 MVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEG--VR 231
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCL 117
P+ T+VSV+ +CA E + GKQVHG I+R + + +V++ ALID+Y K G +
Sbjct: 232 PSAPTFVSVIDACA---QEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDM 288
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ A +F+ ++DV TWN +I+ A N +E+L +F M E + N +TF+ VL+ C
Sbjct: 289 KSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGC 348
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP--FEPDA 235
A L GL+L M ++ V P EHY ++DLLGR L EA + +P +
Sbjct: 349 NHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHI 408
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+V GA+LGAC++HG +DL + +L EL+P++ GRYV+L+NI+A +W A +R M
Sbjct: 409 AVWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVM 468
Query: 296 VEAGIRKIPAYSLIE 310
E + K PA S IE
Sbjct: 469 KERCLEKEPACSRIE 483
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 51/319 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G +SA F ++ + SW ++I+ + + G F EA +F M +
Sbjct: 51 LIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKM------PQ 104
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG----- 115
N +Y S++S G L +QVHG + + +V + ALID YGK G
Sbjct: 105 RNVVSYNSLIS--------GNLQWLRQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLS 156
Query: 116 -------------------------C-LERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
C L+ A RVFK M +K+ +W A+++ N
Sbjct: 157 FSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCD 216
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC- 208
EA +F +M E+G+R + TFV+V+ ACA+ L+ G ++ ++ + + Y C
Sbjct: 217 EAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCN 276
Query: 209 -VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE--LQ 265
++D+ + G + A+ P D L+ +G + V RR++E ++
Sbjct: 277 ALIDMYAKCGDMKSAENLFEMAPMR-DVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVE 335
Query: 266 PKHCGRYVVLSNI-HAGLE 283
P H VLS HAGL+
Sbjct: 336 PNHVTFLGVLSGCNHAGLD 354
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 35/224 (15%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++S C + + L VHG++++ + F+ LID Y K GC E A + F
Sbjct: 13 YSFLISKC---ITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFG 69
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------------------------ 161
+ K +WN +IS + EA +FD+M ++
Sbjct: 70 DLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAV 129
Query: 162 --GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
G+ N I A++ A + L +F M + V + +V RA L
Sbjct: 130 IVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVV-----SWTSMVVAYTRACRL 184
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
EA + MP + S L G + +G D +V +++LE
Sbjct: 185 DEACRVFKDMPVKNTVSWTALLTGFVR-NGGCDEAFDVFKQMLE 227
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 175/301 (58%), Gaps = 5/301 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G + A +F M +R+ VSW SII+GFV+NG F EA+ F M+ +
Sbjct: 390 MIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHF--MLMRRDAKS 447
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ TY LS+ A L L +G+Q H ++R + G ALI Y K G + A
Sbjct: 448 ADWCTYACCLSASANLAT---LQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEA 504
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF MV++D+ +WNA+I ASN E + +F EM+ +R +EIT V VL+AC+ A
Sbjct: 505 RQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHA 564
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ GL F+SM+ + + P+ EHY C+VDLLGRAG L EA E ++ M +P+A V GA
Sbjct: 565 GLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGA 624
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++H ++ +L EL+P YV+LSNI +W+ A +R M E+ +
Sbjct: 625 LLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADKVRVLMKESIL 684
Query: 301 R 301
R
Sbjct: 685 R 685
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 40/288 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GYV+ GD+D A F + +V+SW +++NG+ + G GEA +F + M N+V
Sbjct: 204 MLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELF-DRMPERNVVA 262
Query: 61 PN------------EATY-----------VSVLSSCAGLVNEGGLYLGKQVHGYILRNEI 97
N EA Y +S + +G V G L K V + +
Sbjct: 263 WNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSD-- 320
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
+V TAL+ Y K ++ A ++F +V++D WN MIS EA+V+F +
Sbjct: 321 --NVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQ 378
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M K + I++ ++ CA+ + +F M + V + ++ + G
Sbjct: 379 MPNKDM----ISWNTMIAGCAQGGQIRKAASIFRKMKRRNTV-----SWNSIISGFVQNG 429
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH-EVGRRLLEL 264
L EA + M DA AC + + +L ++GR+ L
Sbjct: 430 LFVEALQHF--MLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSL 475
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY KNG + AI L + M D+VSW S++ G +RN ++ F M
Sbjct: 142 MISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEM-------- 193
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ VS G V G L + I ++ V L++ Y + G + A
Sbjct: 194 PDK-DLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWV----NLVNGYCQAGRMGEA 248
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V WN ++S S+ + A +F EM EK N I++ +++ R+
Sbjct: 249 RELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEK----NSISWTTMVSGFVRS 304
Query: 181 QLVELGLELFHSM 193
++ ++ M
Sbjct: 305 GKLQEAKDVLSKM 317
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159
+VF + + G L A R+F+ M ++V ++NAM+S+LA + R EA +FDEM
Sbjct: 10 AVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMP 69
Query: 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219
R N +++ ++ AC++ VE LF +M + E + +V RAG L
Sbjct: 70 ----RRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEY-----SWTIMVSCYVRAGEL 120
Query: 220 SEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ A+E + MP E A+ ++ +G
Sbjct: 121 TLARELLDRMPGEKCAACYNTMISGYAKNG 150
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 40/249 (16%)
Query: 7 KNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++G + +A LFE M +R+VVS+ ++++ +G EA +F M R N ++
Sbjct: 23 RSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEM------PRRNPVSW 76
Query: 67 VSVLSSCA--GLVNEG-GLYLGKQ----------VHGYILRNEIVLSVFM---------- 103
+++ +C+ G V + GL+ V Y+ E+ L+ +
Sbjct: 77 NTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCA 136
Query: 104 --GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+I Y K G E AI + + M D+ +WN+++ L N ++ FDEM +K
Sbjct: 137 ACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDK 196
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221
L +++ +L RA +++ F + P + + +V+ +AG + E
Sbjct: 197 DL----VSWNLMLEGYVRAGDLDVASAFFSRIPS-----PNVISWVNLVNGYCQAGRMGE 247
Query: 222 AKEFMRSMP 230
A+E MP
Sbjct: 248 ARELFDRMP 256
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G +D A +LFE +DVV WT+++NG+V+ F EA+ +F+ M +R
Sbjct: 219 MVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM--QTAGIR 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS+L+ CA G L GK +HGYI N + + +GTAL+D+Y K GC+E A
Sbjct: 277 PDNFVLVSLLTGCA---QTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETA 333
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + +D +W ++I LA N AL ++ EM+ G+R + ITFVAVLTAC
Sbjct: 334 LEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHG 393
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS---V 237
V G ++FHSM + V P EH C++DLL RAGLL EA+E + M E D + V
Sbjct: 394 GFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPV 453
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LL A + +G V + V +L +++ + +L++++A RW T++R+ M +
Sbjct: 454 YCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKD 513
Query: 298 AGIRKIPAYSLIE 310
GIRK P S IE
Sbjct: 514 LGIRKFPGCSSIE 526
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 148/307 (48%), Gaps = 54/307 (17%)
Query: 2 IDGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM 52
D YV N G ++ +F+ M +RDVVSW +I+ +V NG F +AI VFK M
Sbjct: 79 FDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRM 138
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
NL + +E T VS LS+C+ L N L +G++++ +++ E +SV +G AL+D++
Sbjct: 139 SQESNL-KFDEGTIVSTLSACSALKN---LEIGERIYRFVV-TEFEMSVRIGNALVDMFC 193
Query: 113 KVGCLERAIRVFKSM-------------------------------VIKDVCTWNAMISS 141
K GCL++A VF SM +KDV W AM++
Sbjct: 194 KCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNG 253
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+R EAL +F M+ G+R + V++LT CA+ +E G + H + + V
Sbjct: 254 YVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTV 312
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHE- 256
+VD+ + G + A E + E D + +L+ ++G A+DL +E
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIK-ERDTASWTSLIYGLAMNGMSGRALDLYYEM 371
Query: 257 --VGRRL 261
VG RL
Sbjct: 372 ENVGVRL 378
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 25/290 (8%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
++L++ MLK S+ +G F + + +F + G + P+ T VL S
Sbjct: 10 SLLMYNKMLK-------SLADG----KSFTKVLALFGELRGQG--LYPDNFTLPVVLKSI 56
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L + G++VHGY ++ + ++ +L+ +Y +G +E +VF M +DV
Sbjct: 57 GRLRK---VIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVV 113
Query: 134 TWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
+WN +ISS N R ++A+ +F M +E L+ +E T V+ L+AC+ + +E+G ++
Sbjct: 114 SWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRF 173
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
++ +FE+ + + +VD+ + G L +A+ SM + + +++ G +D
Sbjct: 174 VVTEFEMSVRIGN--ALVDMFCKCGCLDKARAVFDSMR-DKNVKCWTSMVFGYVSTGRID 230
Query: 253 LCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
R L E P K + + N + R++ A +L + M AGIR
Sbjct: 231 ----EARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIR 276
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 181/311 (58%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY K GD+DSA LF+ + +D++ + ++I + +N EA+ +F NM+ V+
Sbjct: 121 MISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQ 180
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SV+S+C+ L G L G + Y+ R I + + TAL+DLY K G +++A
Sbjct: 181 PDEMTLASVISACSQL---GDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKA 237
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ + AMI N + +A+ +FDEM + + N ITF+ +LTA A
Sbjct: 238 YELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHA 297
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F SM K+ +VP ++HYG +VDL GRAG L EA E ++SMP +P A V GA
Sbjct: 298 GLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGA 356
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H V+ + EL+P G +LSNI+A ERW+ LRK E G
Sbjct: 357 LLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGF 416
Query: 301 RKIPAYSLIEA 311
KIP S +E+
Sbjct: 417 SKIPGCSWMES 427
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GDM+ A +F+ M +R+VVSW S++ G+++ G +A +F+ M
Sbjct: 28 LVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQM-------- 79
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E + S + +G V G + + + + V + M I Y K G ++ A
Sbjct: 80 -PERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTM----ISGYSKCGDVDSA 134
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACA 178
+F + KD+ +NAMI+ A NSR EAL +F+ M ++ +E+T +V++AC+
Sbjct: 135 CELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACS 194
Query: 179 RAQLVELG--LELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
+ + G +E + LG + + H ++DL + G + +A E + + D
Sbjct: 195 QLGDLRFGPWIESYMRRLG----IEMDGHLATALLDLYAKCGSIDKAYELFHGLR-KKDL 249
Query: 236 SVLGALLGACKIHG-AVD 252
A++ C I+G A+D
Sbjct: 250 VAYTAMILGCGINGKAID 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 37/181 (20%)
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
+++ TAL+D Y K+G +E A ++F M ++V +WN+M++ ++A +F +M E
Sbjct: 22 IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPE 81
Query: 161 KGL---------------------------RANEITFVAVLTACARAQLVELGLELFHSM 193
+ + N ++++ +++ ++ V+ ELF +
Sbjct: 82 RNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQV 141
Query: 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PF---EPDASVLGALLGACKIH 248
GK ++ + ++ + +EA +M P+ +PD L +++ AC
Sbjct: 142 GGKDLLL-----FNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQL 196
Query: 249 G 249
G
Sbjct: 197 G 197
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 179/310 (57%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D V++GD+D+A +F M +R+VVSW +II GF RNG EA+ +F M L
Sbjct: 132 LLDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLA- 190
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT V +S+ + G L +GK HGY+LR E L +G ALI +Y + G + A
Sbjct: 191 PDEATMVGFVSAVRDI---GLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAA 247
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F S+ K+V W ++I+ A++ + ++AL +F EM+ G+ N +TFVAVL AC
Sbjct: 248 HSCFLSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHG 307
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G + F ++ + P+++HYGC+VDLLGRAG L EA ++P +P + +
Sbjct: 308 GLVSEGFKYF-DLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSS 366
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG V++ +L + +P H YV+LSN +A ++W R+ M E G+
Sbjct: 367 LLAACHSHGDVEMAELTASKLADAKPSHGSSYVLLSNTYARAKQWEDLRRTRRRMEEHGV 426
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 427 TKKPGLSWIE 436
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 45 AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---VLSV 101
++C F+ + N A + L++CA L + +Q+H ++++ + V V
Sbjct: 39 SLCAFRAHHRAGRALHANPA-LIPALAACARL--PAAVAEAEQIHALLVKSGVPRTVSDV 95
Query: 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
+ T+LI Y ++G + A +VF M + V TWN ++ +L + A +F EM ++
Sbjct: 96 QVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQR 155
Query: 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP---IMEHYGCVVDLLGRAGL 218
N +++ ++ R + ++LF M + + P M + V +G G+
Sbjct: 156 ----NVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGI 211
Query: 219 LSEAKEFMRSMPFEPDASVLGALLG---ACKIHGAVDLC 254
A ++ F D ++ AL+ C GA C
Sbjct: 212 GKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSC 250
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 10/314 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GD + A +F+ + R++V+W ++I G+ + GC +A+ F M+ V+
Sbjct: 223 MVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLML--QERVK 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T S+LS+CA L G L GK+VH +I + I + F+ LID+Y K G L A
Sbjct: 281 PDEFTMASLLSACAQL---GSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHA 337
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F SM K+ WN MIS+LAS+ + EAL +F +M+ G + N IT +AVL AC
Sbjct: 338 RYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHG 397
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GL++F+ L + V +EHYGC+VDLLGRAG L EA E + +M EP+ + G+
Sbjct: 398 GFVDEGLQIFNK-LDAYGVGAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGS 456
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMV 296
LLGAC++H ++ V +L L H Y++L+NI A ERW +A +R+ M
Sbjct: 457 LLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMA 516
Query: 297 EAGIRKIPAYSLIE 310
G+ K P S +E
Sbjct: 517 RRGVEKTPGCSSLE 530
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 15/253 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY GDMD A+ LF M V+W ++I GF G EA F+
Sbjct: 128 LLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFE-------ATP 180
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLER 119
P T V+ G V G + ++V + RN F+ ++++ Y K G E
Sbjct: 181 PGMRTVVTWTVLVQGYVCAGDMETAREVFDRMPARN-----AFVWSSMVTGYFKAGDAEE 235
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF + +++ WNA+I+ A ++AL F M ++ ++ +E T ++L+ACA+
Sbjct: 236 ARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQ 295
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+E G ++ H + + + ++D+ + G L+ A+ SM ++ +
Sbjct: 296 LGSLEQGKKV-HDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWK-NNECWN 353
Query: 240 ALLGACKIHGAVD 252
++ A HG D
Sbjct: 354 TMISALASHGQSD 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D W ++ + EA V+ + R + + VL A + L L
Sbjct: 19 DPDKWAHLVKEYASQSLLREAALVYARNLPR----RTHHQPLLPVLLKAAAASSPTELGL 74
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
GK +H L++ + +GT ++ +Y K G L A R F M ++V ++NA+++ A
Sbjct: 75 GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAV 134
Query: 145 NSREKEALVMFDEMK 159
AL +F M+
Sbjct: 135 AGDMDGALALFGGMR 149
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ NG++D A +F+ M +RD +W+++I + R G EA+ +F+ M +
Sbjct: 278 MIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLAL- 336
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N + +SVLS C L + L GKQVH ++R+E +++ + LI +Y K G L RA
Sbjct: 337 -NFPSLISVLSVCVSLAS---LDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRA 392
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +KDV WN+MI+ + + +EAL +F +M G+ +++TF+ VL+AC+ +
Sbjct: 393 KQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYS 452
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ GLELF +M K++V P +EHY C+VDLLGRA ++EA + + MP EPDA V GA
Sbjct: 453 GKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGA 512
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ H +DL +L +L+PK+ G YV+LSN++A RW LR+ + +
Sbjct: 513 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSV 572
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 573 TKLPGCSWIE 582
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 17/200 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G++KNG + A +F+ M R+VVSWTS++ G+VRNG EA +F +M
Sbjct: 92 LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM-------- 143
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ VS GL+ EG + +++ + ++V T +I Y + G L+ A
Sbjct: 144 PHK-NVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAV----TNMIGGYCEEGRLDEA 198
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M ++V TW AM+S A N + A +F+ M E+ NE+++ A+L +
Sbjct: 199 RALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHS 254
Query: 181 QLVELGLELFHSMLGKFEVV 200
+ LF +M K VV
Sbjct: 255 GRMREASSLFDAMPVKPVVV 274
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 120/266 (45%), Gaps = 29/266 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y + A+LLFE M +R+ VSW +I+G ++NG EA VF M
Sbjct: 61 MVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTM-------- 112
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
+ VS S G V G + +++ ++ +N + +V +G L + G ++
Sbjct: 113 -PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE-----GRVDD 166
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F M KDV MI R EA +FDEM ++ N +T+ A+++ AR
Sbjct: 167 ARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR----NVVTWTAMVSGYAR 222
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDASV 237
V++ +L FEV+P LLG +G + EA +MP +P V
Sbjct: 223 NGKVDVARKL-------FEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKP-VVV 274
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
++ ++G VD V + + E
Sbjct: 275 CNEMIMGFGLNGEVDKARRVFKGMKE 300
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 29/226 (12%)
Query: 92 ILRNEIVLSVFM-----GTALIDLYGKVGCLERAIRVFKSMVI--KDVCTWNAMISSLAS 144
ILR ++L V + + I Y + G L+ A +VF + + V +WNAM+++
Sbjct: 8 ILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFE 67
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
+ +EAL++F++M ++ N +++ +++ + ++ +F +M + V
Sbjct: 68 ARQPREALLLFEKMPQR----NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV----- 118
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS---VLGALLGACKIHGAVDLCHEVGRRL 261
+ +V R G ++EA+ MP + S +LG LL ++ A R+L
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDA--------RKL 170
Query: 262 LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYS 307
++ P+ V ++N+ G R + R E R + ++
Sbjct: 171 FDMMPEK--DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWT 214
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 183/313 (58%), Gaps = 13/313 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM----MGNV 56
MIDGY K G +D A LF+ M DV+++ S+I G++ G EA+ +F M +G
Sbjct: 310 MIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGAD 369
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
N T V +L++ A L G L G+ +H I + + V++GTAL+D+Y K G
Sbjct: 370 NF------TMVGLLTASASL---GALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGR 420
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A+ FK M ++DV TW+AMI LA N K AL F MK G AN +T++AVLTA
Sbjct: 421 VEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTA 480
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ + L++ G F M + P +EHYGC++DLLGR+GLL EA + +++MP +P+A
Sbjct: 481 CSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAV 540
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ ++L AC++H VDL LL+L+P YV + NI+ +W A+ +R+ M
Sbjct: 541 IWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLME 600
Query: 297 EAGIRKIPAYSLI 309
+ G++K YS I
Sbjct: 601 KRGVKKTAGYSSI 613
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 126/281 (44%), Gaps = 39/281 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I G K G +D A L R+VV+WT +I+G+ R G EA+ F +M+ + +
Sbjct: 177 VISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDG--IA 234
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + +LS+C L + L G +H + +++S + ALID+Y K G RA
Sbjct: 235 PDEVTVIGMLSACGQLKD---LNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRA 291
Query: 121 IRVFKS--------------------------------MVIKDVCTWNAMISSLASNSRE 148
VF + M DV T+N++I+ R
Sbjct: 292 REVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRL 351
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
+EAL++F +M+ GL A+ T V +LTA A + G L H+ + + V +
Sbjct: 352 REALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRAL-HACIEQRLVERDVYLGTA 410
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
++D+ + G + EA + M D A++G +G
Sbjct: 411 LLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSAMIGGLAFNG 450
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
V V T +I K+G L+ A R+ +++V TW +IS + R EA+ F+
Sbjct: 168 VKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNS 227
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M G+ +E+T + +L+AC + + + G L H ++G ++ + ++D+ + G
Sbjct: 228 MLSDGIAPDEVTVIGMLSACGQLKDLNFGCSL-HMLVGDKRMLMSDKLVVALIDMYAKCG 286
Query: 218 LLSEAKEFMRSMPFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKH 268
A+E ++ A++ G CK+ G VD + R L + H
Sbjct: 287 DTGRAREVFDALGRGRGPQPWNAMIDGYCKV-GHVD----IARSLFDQMEDH 333
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 179/295 (60%), Gaps = 4/295 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G + A +F++M RDVVSW +++ + GC+ E + VF M+ + + +
Sbjct: 243 MISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD-STEK 301
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+CA L G L G+ VH YI ++ I + F+ TAL+D+Y K G +++A
Sbjct: 302 PDGFTLVSVLSACASL---GSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKA 358
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF++ +DV TWN++IS L+ + K+AL +F EM +G + N ITF+ VL+AC
Sbjct: 359 LEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHV 418
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ +LF M + V P +EHYGC+VDLLGR G + EA+E + +P + + +L +
Sbjct: 419 GMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLES 478
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
LLGACK G ++ + RLLEL + Y +SN++A RW + D R+ M
Sbjct: 479 LLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNM 533
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
S+I + + A+ VF+ M+ + V P++ ++ VL +CA G G+Q+H
Sbjct: 109 NSVIRAYANSSTPEVALTVFREML--LGPVFPDKYSFTFVLKACAAFC---GFEEGRQIH 163
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
G +++ +V VF+ L+++YG+ G E A +V M ++D +WN+++S+
Sbjct: 164 GLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVD 223
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME--HYG 207
EA +FDEM+E+ + ++ +++ A A LV+ E+F SM P+ + +
Sbjct: 224 EARALFDEMEERNVE----SWNFMISGYAAAGLVKEAKEVFDSM-------PVRDVVSWN 272
Query: 208 CVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAV 251
+V G +E E M +PD L ++L AC G++
Sbjct: 273 AMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSL 320
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 47/250 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y ++G + A + + M RD VSW S+++ ++ G EA +F M
Sbjct: 181 LVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME------- 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ V + +I Y G ++ A
Sbjct: 234 ------------------------ERNVESW-------------NFMISGYAAAGLVKEA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACAR 179
VF SM ++DV +WNAM+++ A E L +F++M + + + T V+VL+ACA
Sbjct: 257 KEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACAS 316
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G E H + K + +VD+ + G + +A E R+ + D S
Sbjct: 317 LGSLSQG-EWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATS-KRDVSTWN 374
Query: 240 ALLGACKIHG 249
+++ +HG
Sbjct: 375 SIISDLSVHG 384
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K+G +D A ++F+ M RDVVSW +I F +G EA +F M +
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM--QTEGCK 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++S+L++CA + G L K++H + L + + + V +GTAL+ +Y K G ++ A
Sbjct: 329 PDAIMFLSILNACA---SAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDA 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +++V +WNAMIS LA + ++AL +F M G++ + +TFVAVL+AC+ A
Sbjct: 386 RVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHA 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + +M + + P + H C+VDLLGRAG L EAK F+ +M +PD + GA
Sbjct: 446 GLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGA 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+ +G V+L V + L+L PK+ YV+LSNI+A +W+ + +R M E GI
Sbjct: 506 LLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGI 565
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 566 RKEPGRSWIE 575
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 138/281 (49%), Gaps = 38/281 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G ++ A +F+N++ D++SWT +I + ++G EA + M +PN
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQM--EQEGFKPNAI 231
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TYVS+L++CA +EG L K+VH + L + L V +GTAL+ +Y K G ++ A VF
Sbjct: 232 TYVSILNACA---SEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVF 288
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M ++DV +WN MI + A + R EA +F +M+ +G + + I F+++L ACA A +E
Sbjct: 289 DRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348
Query: 185 LGLELF-HSMLGKFEV--------VPIMEHYGCVVDL---------------------LG 214
++ H++ EV V + G + D L
Sbjct: 349 WVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408
Query: 215 RAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVD 252
+ GL +A E R M +PD A+L AC G VD
Sbjct: 409 QHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 38/292 (13%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G + A +F+ ++K+ SW ++I G+V + +A+ +F+ M V+PN
Sbjct: 73 YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEG--VQPNAG 130
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
TY+ +L +CA L L GK+VH I + V +GTAL+ +YGK G + A R+F
Sbjct: 131 TYMIILKACASL---SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA------ 178
+++ D+ +W MI + A + KEA + +M+++G + N IT+V++L ACA
Sbjct: 188 DNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247
Query: 179 -----RAQLVELGLEL-------FHSMLGK----------FEVVPIME--HYGCVVDLLG 214
++ GLEL M K F+ + + + + ++
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFA 307
Query: 215 RAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
G EA + M E PDA + ++L AC GA++ ++ R L+
Sbjct: 308 EHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALD 359
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
YV VL C + + L KQVH I+++ + + + L+ +Y + G L+ A VF
Sbjct: 31 YVEVLKRC---LKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFD 87
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
++V K +WNAMI+ + ++A+ +F EM +G++ N T++ +L ACA ++
Sbjct: 88 ALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKW 147
Query: 186 GLELFH------------------SMLGKFEVV--------PIMEH----YGCVVDLLGR 215
G E+ M GK + +M H + ++ +
Sbjct: 148 GKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQ 207
Query: 216 AGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
+G EA M M F+P+A ++L AC GA+ V R L+
Sbjct: 208 SGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALD 258
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K A +F ++ + V WT++I+G+V+ G + + +F M + +
Sbjct: 382 LVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM--HRAKIG 439
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ ATY S+L +CA L L LGKQ+H I+R+ + +VF G+AL+D+Y K G ++ A
Sbjct: 440 ADSATYASILRACANL---ASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEA 496
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+++F+ M +++ +WNA+IS+ A N AL F++M GL+ N ++F+++L AC+
Sbjct: 497 LQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHC 556
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F+SM +++ P EHY +VD+L R+G EA++ M MPFEPD + +
Sbjct: 557 GLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSS 616
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L +C+IH +L + +L ++ + YV +SNI+A W+ ++KA+ E G
Sbjct: 617 ILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERG 676
Query: 300 IRKIPAYSLIE 310
IRK+PAYS +E
Sbjct: 677 IRKVPAYSWVE 687
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 138/261 (52%), Gaps = 7/261 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY+K+G++ +A LF++M++R VV+WT +I G+ ++ F EA +F +M + +
Sbjct: 79 MIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV-- 136
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T ++LS G + QVHG++++ ++ + +L+D Y K L A
Sbjct: 137 PDHITLATLLS---GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLA 193
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD T+NA+++ + +A+ +F +M++ G R +E TF AVLTA +
Sbjct: 194 CHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQM 253
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G ++ HS + K V + ++D + + EA++ MP E D
Sbjct: 254 DDIEFGQQV-HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNV 311
Query: 241 LLGACKIHGAVDLCHEVGRRL 261
L+ C +G V+ E+ R L
Sbjct: 312 LITCCAWNGRVEESLELFREL 332
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K + A LF++M ++D V++ +++ G+ + G +AI +F M +G
Sbjct: 180 LLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG---- 235
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
RP+E T+ +VL+ AG + + G+QVH ++++ V +VF+ AL+D Y K +
Sbjct: 236 FRPSEFTFAAVLT--AG-IQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIV 292
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F M D ++N +I+ A N R +E+L +F E++ + F +L+ A
Sbjct: 293 EARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAA 352
Query: 179 RAQLVELGLEL 189
+ +E+G ++
Sbjct: 353 NSLNLEMGRQI 363
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ + A LF M + D +S+ +I NG E++ +F+ +
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFREL--QFTRFD 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + ++LS A +N L +G+Q+H + + + V +G +L+D+Y K A
Sbjct: 339 RRQFPFATLLSIAANSLN---LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEA 395
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F + + W A+IS ++ L +F EM + A+ T+ ++L ACA
Sbjct: 396 NRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANL 455
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ LG +L HS + + + + +VD+ + G + EA + + MP S A
Sbjct: 456 ASLTLGKQL-HSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS-WNA 513
Query: 241 LLGACKIHG 249
L+ A +G
Sbjct: 514 LISAYAQNG 522
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 177/311 (56%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K GDMD A +LF+ ++VV WT+II G+ G EA ++ M +R
Sbjct: 256 MVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKM--EEAGLR 313
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ +S+L++CA G L LGK++H + R + A ID+Y K GCL+ A
Sbjct: 314 PDDGFLISILAACA---ESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAA 370
Query: 121 IRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
VF M+ K DV +WN+MI A + ++AL +F M +G + TFV +L AC
Sbjct: 371 FDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTH 430
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G + F+SM + +VP +EHYGC++DLLGR G L EA +RSMP EP+A +LG
Sbjct: 431 AGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILG 490
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC++H VD V +L +++P G Y +LSNI+A W ++R M+ G
Sbjct: 491 TLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTG 550
Query: 300 IRKIPAYSLIE 310
+K S IE
Sbjct: 551 GQKPSGASSIE 561
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 119/264 (45%), Gaps = 16/264 (6%)
Query: 1 MIDGYVKNGD--MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y + G +D A+ LF M +RDVV+W S+I G VR G A +F M
Sbjct: 161 LIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEM------ 214
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
E VS + G G + ++ + + IV + ++ Y K G ++
Sbjct: 215 ---PERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIV----SWSTMVCGYSKGGDMD 267
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F K+V W +I+ A +EA ++ +M+E GLR ++ +++L ACA
Sbjct: 268 MARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACA 327
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ ++ LG + H+ + ++ + +D+ + G L A + M + D
Sbjct: 328 ESGMLGLGKRI-HASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSW 386
Query: 239 GALLGACKIHGAVDLCHEVGRRLL 262
+++ +HG + E+ R++
Sbjct: 387 NSMIQGFAMHGHGEKALELFSRMV 410
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 62/305 (20%)
Query: 13 SAILLFENMLKRDVVSWTSIINGFVRNGCFGE-AICVFKNMMGNVNLVRPNEATYVSVLS 71
SA+ +F ++ +V + SII N F M N + P+ TY +L
Sbjct: 71 SAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNG--LFPDNFTYPFLLK 128
Query: 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMVI 129
+C G L L + +H ++ + +F+ +LID Y + G L+ A+ +F +M
Sbjct: 129 ACTG---PSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKE 185
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+DV TWN+MI L + A +FDEM E+ + +++ +L A+A ++ EL
Sbjct: 186 RDVVTWNSMIGGLVRCGELEGACKLFDEMPERDM----VSWNTMLDGYAKAGEMDRAFEL 241
Query: 190 FHSMLGK------------------------FEVVPIME--HYGCVVDLLGRAGLLSEAK 223
F M + F+ P + ++ G + EA
Sbjct: 242 FERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREAT 301
Query: 224 EF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280
E M PD L ++L AC G + L G+R IHA
Sbjct: 302 ELYGKMEEAGLRPDDGFLISILAACAESGMLGL----GKR-----------------IHA 340
Query: 281 GLERW 285
+ RW
Sbjct: 341 SMRRW 345
>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 625
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 185/313 (59%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G +D A LF+ ML++DVVSWT++I+G G +A +F+ M+ L
Sbjct: 266 LLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLAACGYQADAFDIFRQMLKAAML-- 323
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ S++SSCA + + G G+Q H ++++ + L + + +D+Y K ++ A
Sbjct: 324 PNSFTFGSIVSSCADVNDLGS---GRQCHALVVKHGLELVPIIASCFVDMYSKCAKMDDA 380
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---KGLRANEITFVAVLTAC 177
IR+F+ M +D+ +WNAMI LA N + +L ++DEM + + + N +TFV VL+AC
Sbjct: 381 IRMFEIMPQRDIISWNAMICGLAQNGQSARSLELYDEMTQLHYESVTPNSVTFVGVLSAC 440
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ A V+ G F M+ F + PI EHY C++DL RAG L EA+E + ++PF+ DA +
Sbjct: 441 SHAGAVQKGCSYFTQMVNDFHIEPISEHYTCLIDLFARAGWLDEAEEIISNVPFKHDAVI 500
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LG LL C+ +G +D+ +RLL P + +LSN++ E W+ A+ LR A +
Sbjct: 501 LGILLNGCRKYGNLDMAKRFAKRLLVNNPDNASAIFLLSNMYIANEEWSDASKLRDAAIS 560
Query: 298 AGIRKIPAYSLIE 310
+G K+ S I+
Sbjct: 561 SGTHKVMGNSWID 573
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 10/228 (4%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G M+ A +F+ M RD++SW +++ VR+G G + F +M G V+P+E
Sbjct: 169 YAELGLMEDAGKVFDCMPLRDLMSWNVLLDCGVRSGEAGSCMKEFLSMTGCG--VQPDEF 226
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL+ A L GL QVH IL++ + +F+ +L+DLYG+ G ++ A ++F
Sbjct: 227 TFATVLNGLAEL--SAGLE-AMQVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKKLF 283
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+M+ KDV +W A+IS LA+ + +A +F +M + + N TF +++++CA +
Sbjct: 284 DAMLEKDVVSWTAVISGLAACGYQADAFDIFRQMLKAAMLPNSFTFGSIVSSCADVNDLG 343
Query: 185 LGLELFHSMLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G + H+++ K E+VPI+ C VD+ + + +A MP
Sbjct: 344 SGRQC-HALVVKHGLELVPIIA--SCFVDMYSKCAKMDDAIRMFEIMP 388
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 13/245 (5%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M +RD SW + I+G R G +A+ F M + LV P+ TY S++S C G+
Sbjct: 86 MPERDSWSWNTAISGLARAGRTRDALRRFLQMT-HTALV-PDAFTY-SIVSPCCGV---- 138
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
L +QVH ++ + +GT I LY ++G +E A +VF M ++D+ +WN ++
Sbjct: 139 DLGSARQVHARAVKAGVFADACVGTGFIKLYAELGLMEDAGKVFDCMPLRDLMSWNVLLD 198
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF--HSMLGKFE 198
+ + F M G++ +E TF VL A + GLE HS++ K
Sbjct: 199 CGVRSGEAGSCMKEFLSMTGCGVQPDEFTFATVLNGLAE---LSAGLEAMQVHSIILKSG 255
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVG 258
+ + ++DL GR G + AK+ +M E D A++ G ++
Sbjct: 256 YLKDLFLCNSLLDLYGRCGYIDLAKKLFDAM-LEKDVVSWTAVISGLAACGYQADAFDIF 314
Query: 259 RRLLE 263
R++L+
Sbjct: 315 RQMLK 319
>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 521
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 185/307 (60%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + +A LF+ + RDVVSWT+++ G+ R G EA VFK M+ N PNEA
Sbjct: 205 YAKCGALKNAQNLFDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKRMVLNAE-AEPNEA 263
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYI-LRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
T V+VLS+ A + G L LG+ VH YI R ++V+ + AL+++Y K G ++ +RV
Sbjct: 264 TVVTVLSASASI---GALSLGQWVHSYIDSRYDLVVDGNIENALLNMYVKCGDMQMGLRV 320
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F +V KD +W +I LA N EK+ L +F M + + +++TF+ VL+AC+ A LV
Sbjct: 321 FDMIVHKDAISWGTVICGLAMNGYEKKTLELFSRMLVEVVEPDDVTFIGVLSACSHAGLV 380
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G+ F +M + +VP M HYGC+VD+ GRAGLL EA+ F+RSMP E + + GALL
Sbjct: 381 NEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLLEEAEAFLRSMPVEAEGPIWGALLQ 440
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
ACKIHG + + L+ + G +LSN++A ERW+ A +RK+M ++K+
Sbjct: 441 ACKIHGNEKMSEWIMGH-LKGKSVGVGTLALLSNMYASSERWDDANKVRKSMRGTRLKKV 499
Query: 304 PAYSLIE 310
S +E
Sbjct: 500 AGCSWVE 506
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 5/198 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ + D+ SA LF ++ DVVSWTS+++G ++G +A+ F NM +VRPN A
Sbjct: 101 YLAHNDVVSASNLFRSIPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAA 160
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRV 123
T V+ L +C+ L G L LGK H Y LR I +V A+++LY K G L+ A +
Sbjct: 161 TLVAALCACSSL---GALGLGKSAHAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNL 217
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQL 182
F + +DV +W ++ A +EA +F M NE T V VL+A A
Sbjct: 218 FDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGA 277
Query: 183 VELGLELFHSMLGKFEVV 200
+ LG + + ++++V
Sbjct: 278 LSLGQWVHSYIDSRYDLV 295
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
N T+ L +C + ++H +++++ L +F+ +L+ Y + A
Sbjct: 55 NHYTFTHALRACYSHHSRSK---ALEIHAHLVKSGHYLDLFLQNSLLHFYLAHNDVVSAS 111
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTACAR 179
+F+S+ DV +W +++S LA + E +AL F M K K +R N T VA L AC+
Sbjct: 112 NLFRSIPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSS 171
Query: 180 AQLVELG 186
+ LG
Sbjct: 172 LGALGLG 178
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 186/313 (59%), Gaps = 17/313 (5%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69
D + LF + + ++ W ++I G V N CF +AI F +M + + PN T+ V
Sbjct: 61 DTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAI-EFYGLMRSEGFL-PNNFTFPFV 118
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEI---------VLSVFMGTALIDLYGKVGCLERA 120
L +CA L++ L LG ++H +++ I V +VF+GT+L+D+Y K G +E+A
Sbjct: 119 LKACARLLD---LQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKA 175
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK---GLRANEITFVAVLTAC 177
VF M KD+ +W AMI A N KEA+ +F +M+ + G++ + TF+ +L C
Sbjct: 176 RSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGC 235
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A LV+ G F+SM F + P +EHYGC+VDLLGRAGLL EA + +R+MP E +A V
Sbjct: 236 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 295
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
GALLGAC+IH L ++L+EL+P + G YV+LSNI++ +W+ A +R +M E
Sbjct: 296 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 355
Query: 298 AGIRKIPAYSLIE 310
I+K P S IE
Sbjct: 356 KRIQKPPGCSWIE 368
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-V 59
++D Y K G+M+ A +F+ M ++D+VSW ++I G+ NG EAI +F M L +
Sbjct: 162 LVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGI 221
Query: 60 RPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
+P+ T++ +L C AGLV+EG Y + L S+ ++DL G+ G L
Sbjct: 222 KPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSL----TPSIEHYGCMVDLLGRAGLL 277
Query: 118 ERAIRVFKSMVIK-DVCTWNAMISS 141
+ A ++ ++M ++ + W A++ +
Sbjct: 278 DEAHQLIRNMPMEANAIVWGALLGA 302
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G MD A ++F+ M + D SW+++++G+ +NG E + + + M V
Sbjct: 108 LIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAEN--VS 165
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T SV+ C L G L LGK VH YI + + + V +GTAL+ +Y K G L+ A
Sbjct: 166 SDAFTLASVVGVCGDL---GVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNA 222
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M +DV TW+ MI+ A + +++AL +FD MK + N +TF +VL+A + +
Sbjct: 223 LKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHS 282
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F +M ++++ P ++HYGC+VDL RAG++ A +F+++MP EP+ +
Sbjct: 283 GLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRT 342
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK HG L + R++L+L P YV +SN++A L RW+ +R M E
Sbjct: 343 LLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAP 402
Query: 301 RKIPAYSLIE 310
+K +S IE
Sbjct: 403 KKQHGWSSIE 412
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 9/243 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+G + A +F ++ W +II G+ + AI ++K+M + + PN T+
Sbjct: 14 HGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMF--LCGISPNSYTFG 71
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
VL++C L+ L G+++H I++ + + LI LY GC++ A +F M
Sbjct: 72 FVLNACCKLLR---LCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEM 128
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
D +W+ M+S + N + E L + EM+ + + ++ T +V+ C +++LG
Sbjct: 129 PEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG- 187
Query: 188 ELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ HS + K E V I G +V + + G L A + + M E D + ++
Sbjct: 188 KWVHSYIDK-EGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYA 245
Query: 247 IHG 249
IHG
Sbjct: 246 IHG 248
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K GD+D+ LF++M +++VSW ++I G+ N + EA+ F+ MM R
Sbjct: 281 MVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF-R 339
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VSV+S+CA L G + + +I ++ I L+V +G ALID++ K G + RA
Sbjct: 340 PDEATLVSVVSACAQL---GSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRA 396
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + + TW MIS A N ++AL++++ M +G++ ++ F+A L ACA
Sbjct: 397 ESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHG 456
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G +F+ M+ ++ + P MEHYGC+VDLLGRAG L EA F+ SMP EP +
Sbjct: 457 GLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVT 516
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C HG +L V +++ EL+P + V++SN A RW+ D R +M GI
Sbjct: 517 LLCSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGI 576
Query: 301 RKIPAYSLIE 310
K+P S I+
Sbjct: 577 EKVPGSSSIQ 586
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ +GD A+ FE M +R+VVSW +++ GF R G A VF M N
Sbjct: 192 YMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVFDRMPSR------NAV 245
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++ ++S G G + + V + + ++V TA++ Y K+G L+ +F
Sbjct: 246 SWNLMIS---GYAMSGDVEAARSVFDRMDQKDVV----SWTAMVSAYAKIGDLDTVNELF 298
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLV 183
M +K++ +WNAMI+ NSR EAL F M +G R +E T V+V++ACA+ V
Sbjct: 299 DHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSV 358
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E S +GK + + ++D+ + G + A+ M
Sbjct: 359 EY-CNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKM 403
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 59 VRPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V PN T+ +L +CA GL G VHG I+R VF+ AL+D+Y + G
Sbjct: 107 VPPNGFTFTFLLRACALLGLPRPCGC-----VHGQIVRCGFGSDVFVQNALMDVYHRCGG 161
Query: 117 LER-----AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
A +VF MV +DV +WN+++ S+ A+ F+ M E+ N +++
Sbjct: 162 GGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPER----NVVSWN 217
Query: 172 AVLTACAR 179
V+ AR
Sbjct: 218 TVVAGFAR 225
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 185/338 (54%), Gaps = 31/338 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNL- 58
MI G ++ D A +F+ M+ +D VSW +++ G+ NGCF E + +F M +GNV
Sbjct: 187 MIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWN 246
Query: 59 --------------------------VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92
PN T+VSVL + A L G H I
Sbjct: 247 VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYL---AAFREGMAFHACI 303
Query: 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
++ + + +G +LID+Y K G L+ + ++F M KD +WNAM+S A + A+
Sbjct: 304 IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAI 363
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212
+F M+E ++ + ++FV+VL+AC A LVE G ++FHSM K+ + P +EHY C+VDL
Sbjct: 364 ALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDL 423
Query: 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272
LGRAGL E F++ MP EPDA V GALLG+C++H V L L++L+P++ +
Sbjct: 424 LGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 483
Query: 273 VVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
VVLS+I+A RW A R M + G++K P S +E
Sbjct: 484 VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVE 521
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM------------------- 52
D A +F++ + W S+I + R+ + EA+ ++ M
Sbjct: 100 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDM 159
Query: 53 ---MGNVNLVRP-----NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104
MG++ R + V+ + AGL Y+ ++V ++ + V G
Sbjct: 160 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQD---DVSWG 216
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T + Y GC + +F M + +V TWN +I++ N KEA+ F +M+ +
Sbjct: 217 TMMAG-YAHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFH 274
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
N +TFV+VL A A G+ FH+ + + + ++D+ + G L +++
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333
Query: 225 FMRSMPFEPDASVLGALLGACKIHGAVD 252
M + D A+L +HG D
Sbjct: 334 LFNEMDHK-DTVSWNAMLSGYAVHGHGD 360
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 190/312 (60%), Gaps = 6/312 (1%)
Query: 1 MIDGYVKNG--DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G D+ +A LF+ M+ RDVVSW ++I + +NG EA+ ++ M+
Sbjct: 233 IIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGD 291
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VR N T +VL +CA + G + GK++H ++R + +V++GT+++D+Y K G +E
Sbjct: 292 VRCNAVTLSAVLLACA---HAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVE 348
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A + F+ + K++ +W+AMI+ + +EAL +F +M++ GL+ N ITF+ VL AC+
Sbjct: 349 MAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACS 408
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L+ G +++M +F + P +EHYGC+VDLLGRAG L EA ++ M +PDA++
Sbjct: 409 HAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALW 468
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL AC+I+ V+L RL EL + G YV+LSNI+A W +R +
Sbjct: 469 GALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTR 528
Query: 299 GIRKIPAYSLIE 310
GI K P YS +E
Sbjct: 529 GIEKPPGYSSVE 540
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + + V T++ +G +RN + +F++M+ + + +EA + LS+ A +
Sbjct: 147 FDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVP 206
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE-RAIRVFKSMVIKDVCTWN 136
+ G + +H + + + + +ID Y K G + A R M+ +DV +WN
Sbjct: 207 DRG---ITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMDRDVVSWN 263
Query: 137 AMISSLASNSREKEALVMFDEMKEKG--LRANEITFVAVLTACARAQLVELGLELFHSML 194
MI+ A N EAL ++ +M G +R N +T AVL ACA A ++ G + + ++
Sbjct: 264 TMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVV 323
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 179/310 (57%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G + A FE M +D ++ +++GF ++G EA+ VF M + + V+
Sbjct: 487 LVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRM--DQSGVK 544
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N T+VS LS+ A L + GKQ+H +++ +G ALI LYGK G E A
Sbjct: 545 HNVFTFVSALSASANLAE---IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F M ++ +WN +I+S + + R EAL +FD+MK++G++ N++TF+ VL AC+
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F SM ++ + P +HY CV+D+ GRAG L AK+F+ MP DA V
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACK+H +++ + LLEL+P YV+LSN +A E+W +RK M + G+
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 782 RKEPGRSWIE 791
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 11/257 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G ++ A + E + ++DVVSWTS+I G+V++ C +A+ FK M +
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG--IW 443
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ S +S CAG+ + G Q+H I + V + AL++LY + G + A
Sbjct: 444 PDNIGLASAISGCAGI---NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
F+ M +KD T N ++S A + +EAL +F M + G++ N TFV+ L+A A
Sbjct: 501 FSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
++ G ++ H+ + K E ++ L G+ G +AK M E +
Sbjct: 561 AEIKQGKQI-HARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNT 618
Query: 241 LLGACKIHG----AVDL 253
++ +C HG A+DL
Sbjct: 619 IITSCSQHGRGLEALDL 635
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y KNG + A +FE + RD VSW ++++G+ +NG EA+ +++ M + V
Sbjct: 83 LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQM--HRAGVV 140
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P SVLSSC A L +G L +H ++ +F+G A+I LY + G
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRL-----IHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF M +D T+N +IS A + AL +F+EM+ GL + +T ++L ACA
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 179 RAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEA 222
++ G +L HS L K + IME G ++DL + G + A
Sbjct: 256 SLGDLQKGTQL-HSYLFKAGISSDYIME--GSLLDLYVKCGDVETA 298
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 116/222 (52%), Gaps = 6/222 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D YVK GD+++A+++F + + +VV W ++ F + ++ +F M +R
Sbjct: 285 LLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG--IR 342
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ TY +L +C + LG+Q+H ++ +++ LID+Y K G LE+A
Sbjct: 343 PNQFTYPCILRTCTCTRE---IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RV + + KDV +W +MI+ + K+AL F EM++ G+ + I + ++ CA
Sbjct: 400 RRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGI 459
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ GL++ H+ + + + +V+L R G + EA
Sbjct: 460 NAMRQGLQI-HARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y++ G A +F +M RD V++ ++I+G + G A+ +F+ M + + P+
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM--QFSGLSPDCV 245
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T S+L++CA L G L G Q+H Y+ + I M +L+DLY K G +E A+ +F
Sbjct: 246 TISSLLAACASL---GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
S +V WN M+ + + ++ +F +M+ G+R N+ T+ +L C + ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226
LG E HS+ K M G ++D+ + G L +A+ +
Sbjct: 363 LG-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 5/210 (2%)
Query: 21 MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80
M +R S + GF+ + + + +F + + P + + L +C G N
Sbjct: 1 MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD--FACALRACRG--NGR 56
Query: 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+ ++H + + +G LIDLY K G + A RVF+ + +D +W AM+S
Sbjct: 57 RWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLS 116
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
A N +EAL ++ +M G+ +VL++C +A+L G L H+ K
Sbjct: 117 GYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHAQGYKHGFC 175
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ V+ L R G A+ MP
Sbjct: 176 SEIFVGNAVITLYLRCGSFRLAERVFCDMP 205
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y+K G ++S LF+ M + +++W ++I+G+ +NG + + +F+ M + V
Sbjct: 194 FITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG--VC 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLSSCA L G +G++V + N +VF+ ALI +Y + G L +A
Sbjct: 252 PDPFTLVSVLSSCAHL---GAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M +K + +W AMI + + L +FD+M ++G+R + FV VL+AC+ +
Sbjct: 309 RAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHS 368
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L + GLELF +M ++++ P EHY C+VDLLGRAG L EA EF+ SMP EPD +V GA
Sbjct: 369 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGA 428
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIH VD+ +++E +P + G YV++SNI++ + +R M E
Sbjct: 429 LLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAF 488
Query: 301 RKIPAYSLIE 310
RK P YS +E
Sbjct: 489 RKKPGYSYVE 498
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 9/251 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDV--VSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
+I Y K G ++ A +FE V + ++I+G+ N +A +F+ M
Sbjct: 91 LISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRM--KETG 148
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V + T + ++ C V E L+LG+ +HG ++ V + + I +Y K G +E
Sbjct: 149 VSVDSVTILGLVPLCT--VPEY-LWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVE 205
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
R+F M +K + TWNA+IS + N + L +F++MK G+ + T V+VL++CA
Sbjct: 206 SGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCA 265
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++G E+ ++ P + ++ + R G L++A+ MP + S
Sbjct: 266 HLGAKKIGQEV-GELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVS-W 323
Query: 239 GALLGACKIHG 249
A++G +HG
Sbjct: 324 TAMIGCYGMHG 334
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 42/268 (15%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
SW + F E+I ++++M+ + + P+ ++ +L SCA L G+
Sbjct: 16 TSWNVRLRELAYQSLFTESISLYRSMLRSGS--SPDAFSFPFILKSCASLSLPVS---GQ 70
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD---VCTWNAMISSLA 143
Q+H +++R F+ TALI +Y K G +E A +VF+ VC +NA+IS
Sbjct: 71 QLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVC-YNALISGYT 129
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-------------- 189
+NS+ +A MF MKE G+ + +T + ++ C + + LG L
Sbjct: 130 ANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVA 189
Query: 190 ----FHSMLGK----------FEVVPI--MEHYGCVVDLLGRAGLLSEAKEF---MRSMP 230
F +M K F+ +P+ + + V+ + GL + E M+S
Sbjct: 190 VLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSG 249
Query: 231 FEPDASVLGALLGACKIHGAVDLCHEVG 258
PD L ++L +C GA + EVG
Sbjct: 250 VCPDPFTLVSVLSSCAHLGAKKIGQEVG 277
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 181/310 (58%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ Y K GD+D+A LF++M +++VSW ++I G+ N + EA+ F+ MM R
Sbjct: 280 MVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF-R 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+EAT VSV+S+CA L G + + +I ++ L+V +G ALID++ K G + RA
Sbjct: 339 PDEATLVSVVSACAQL---GSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRA 395
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + + TW MIS A N +EAL++++ M +G+ + F+A L AC
Sbjct: 396 QSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHG 455
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G +F+ M+ ++ + P MEHYGCVVDLLGRAG L EA F+ SMP EP +
Sbjct: 456 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVT 515
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C HG +L V +++ EL+P + V++SN A RW+ R +M GI
Sbjct: 516 LLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGI 575
Query: 301 RKIPAYSLIE 310
K+P SLI+
Sbjct: 576 EKVPGSSLIQ 585
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y+ +GD A+ LFE M +R+VVSW +++ GF R G A VF M N
Sbjct: 191 YMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTARTVFDRMPSR------NAV 244
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
++ ++S G G + + V + + ++V TA++ Y K+G L+ A +F
Sbjct: 245 SWNLMIS---GYATSGDVEAARSVFDRMDQKDVV----SWTAMVSAYAKIGDLDTAKELF 297
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLV 183
M +K++ +WNAMI+ NSR EAL F M +G R +E T V+V++ACA+ V
Sbjct: 298 DHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSV 357
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
E S +GK + ++D+ + G + A+ M
Sbjct: 358 EY-CNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKM 402
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 102/268 (38%), Gaps = 79/268 (29%)
Query: 59 VRPNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V PN T+ +L +CA GL G VHG I+R VF+ AL+D+Y + G
Sbjct: 106 VPPNGFTFTFLLRACALLGLPRPCGC-----VHGQIVRCGFGSDVFVQNALMDVYYRCGG 160
Query: 117 LERAI-----RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA------ 165
+VF MV KDV +WN+++ S+ A+ +F+ M E+ + +
Sbjct: 161 GGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVA 220
Query: 166 ---------------------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +++ +++ A + VE +F M K +VV
Sbjct: 221 GFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQK-DVV---- 275
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMP---------------------------------- 230
+ +V + G L AKE MP
Sbjct: 276 SWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEG 335
Query: 231 -FEPDASVLGALLGACKIHGAVDLCHEV 257
F PD + L +++ AC G+V+ C+ +
Sbjct: 336 RFRPDEATLVSVVSACAQLGSVEYCNWI 363
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 180/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY+K +DSA+ F M + VSWT++I G V++ +A+ +F M+ + R
Sbjct: 191 MLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKML--LEGHR 248
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T V VLS+CA + G L LG+ +HGY ++ ++ + AL+D+Y K G + A
Sbjct: 249 PNHITIVGVLSACADI---GALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASA 305
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ + +KD TW MISS ++A+ +F +M G+ N +TFV+VL+AC+ A
Sbjct: 306 FSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHA 365
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G ELF M + + P +EHYGC+VDLLGR GLL EA+ + M EPD + +
Sbjct: 366 GLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRS 425
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC HG L G+ +++ +P G YV+L N++A RW A D+RK M+ I
Sbjct: 426 LLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKI 485
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 486 YKKPGCSWIE 495
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 45/291 (15%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G A LF+ + D++S+TS+++ ++ +AI VF + + + + RP+
Sbjct: 63 YAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGH--RPDGF 120
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
V LS+ GL G +G VHG I R + + + AL+D+Y + G E A VF
Sbjct: 121 AAVGALSASGGL---GDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVF 177
Query: 125 KSMVIKDVCT-------------------------------WNAMISSLASNSREKEALV 153
M++KD T W A+I+ + + +AL
Sbjct: 178 DRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALE 237
Query: 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213
+F +M +G R N IT V VL+ACA ++LG + H K + ++D+
Sbjct: 238 LFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAI-HGYGSKSNATTNIIVTNALMDMY 296
Query: 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
++G ++ A + + DA ++ + + G GR+ +EL
Sbjct: 297 AKSGSIASAFSVFEEVQMK-DAFTWTTMISSFTVQGN-------GRKAVEL 339
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y KNG +D A +F M+ R+ VSW+++I+GF +NG EA+ +F+NM + ++
Sbjct: 250 LVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASG--IQ 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS L +C+ N G L LG+ VHG+I+R + +GTA ID+Y K G L A
Sbjct: 308 PDSGALVSALLACS---NIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASA 363
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + +D+ WNAMI+ ++ R ++AL +F EM E G+R + TF ++L+A + +
Sbjct: 364 QMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ F++ P +HY C+VDLL R+GL+ EA + + SM EP ++ A
Sbjct: 424 GLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVA 483
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C + ++L + +LELQP G ++SN++A ++W++ +RK M ++G
Sbjct: 484 LLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGS 543
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 544 KKMPGCSSIE 553
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 15/283 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G M A+ +F M +RD V+W++++ GFV G +AI +++ M + V+ +E
Sbjct: 153 YARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM--REDGVKGDEV 210
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V+ +C N + +G VHG++LR+ + + V T+L+D+Y K G L+ A RVF
Sbjct: 211 VMIGVIQACTAARN---VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVF 267
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV ++ +W+AMIS A N + EAL +F M+ G++ + V+ L AC+ ++
Sbjct: 268 GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLK 327
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG + ++ +F+ I+ +D+ + G L+ A + + +M + D + A++
Sbjct: 328 LGRSVHGFIVRRFDFNCILG--TAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIAC 384
Query: 245 CKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
C HG A+ L E+ ++P H +LS + H+GL
Sbjct: 385 CGAHGRGQDALTLFQEMNE--TGMRPDHATFASLLSALSHSGL 425
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI 97
R G A+ VF+ + RP+ T+ LS+CA L G L G+ V
Sbjct: 86 RRGSPASALRVFRAL---PPAARPDSTTFTLALSACARL---GDLRGGESVRDRAFDAGY 139
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
VF+ ++L+ LY + G + A++VF M +D TW+ M++ S + +A+ M+
Sbjct: 140 KDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRR 199
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLG 214
M+E G++ +E+ + V+ AC A+ V +G + +L + +VV +VD+
Sbjct: 200 MREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATS----LVDMYA 255
Query: 215 RAGLLSEA 222
+ GLL A
Sbjct: 256 KNGLLDVA 263
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y + G MD A+ +FE M +RD+VSW S+I GF+ NG +A+ F +MG+ +
Sbjct: 356 MISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFA-LMGHEG-KK 413
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ ++ LSSCA + L +G Q+H +++ + + + ALI +Y K G + A
Sbjct: 414 PDQLSFACGLSSCATI---AALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEA 470
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF + DV +WN++I A N KEAL +F+EM +G+ +E+TF+ +L+AC A
Sbjct: 471 GLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHA 530
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ GL+LF M + + P+ EHY C+VDLLGR G L EA E +R M + A V GA
Sbjct: 531 GMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGA 590
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC+ HG ++L +L E +P YV+LSNIHA RWN ++R M +
Sbjct: 591 LLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASST 650
Query: 301 RKIPAYSLIE 310
K P S +E
Sbjct: 651 VKEPGCSWVE 660
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 61/269 (22%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y KNG +++A LF+ M +R++VSW ++++G++ NG F EA +F ++
Sbjct: 12 MISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF--------VIM 63
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P +F T +I Y + G +E+A
Sbjct: 64 PRR------------------------------------DLFSWTLMITCYTRNGEVEKA 87
Query: 121 IRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+F S+ K V WNAMIS R EA +FDEM K L I++ ++L
Sbjct: 88 RELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNL----ISWNSMLAGY 143
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ + + LGLE F+ M + +VV + +VD + G L A +F + +P+
Sbjct: 144 TQNRKMRLGLEFFNEM-DERDVVS----WNLMVDGFIQVGDLDSAWKFFQETQ-KPNVVS 197
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQP 266
+L +G + RRL + P
Sbjct: 198 WVTMLSGFARNGNI----LESRRLFDQMP 222
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 41/286 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG-------CFGEAICVFK--- 50
M+ GY+ NG D A LF M +RD+ SWT +I + RNG F C ++
Sbjct: 43 MVSGYLHNGKFDEAYKLFVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGV 102
Query: 51 ---NMM--GNVNLVRPNEA----------TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN 95
N M G V R NEA +S S AG + LG + +
Sbjct: 103 ACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDER 162
Query: 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF 155
++V M +D + +VG L+ A + F+ +V +W M+S A N E+ +F
Sbjct: 163 DVVSWNLM----VDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLF 218
Query: 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215
D+M + N +++ A+++A + ++ LF M + V + +++ R
Sbjct: 219 DQMPSR----NIVSWNAMISAYVQRCEIDEASRLFEEMPERDSV-----SWTTMINGYVR 269
Query: 216 AGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVG 258
G L EA+E + MP+ +++ + K+ A E+G
Sbjct: 270 IGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIG 315
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DG+++ GD+DSA F+ K +VVSW ++++GF RNG E+ +F + M + N+V
Sbjct: 170 MVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLF-DQMPSRNIVS 228
Query: 61 PNE--ATYVSVLS-----------------SCAGLVNEGGLYLGKQVHGYILRNEIVL-S 100
N + YV S ++N G + +GK L NE+ +
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMIN-GYVRIGKLDEARELLNEMPYRN 287
Query: 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160
+ TA+I Y + ++ A R F + DV WNAMI+ A + R EAL + M
Sbjct: 288 IGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVN 347
Query: 161 KGLRANEITFVAVLTACARAQLVELGLELFHSM 193
K + +T+ +++ A+ ++ +++F M
Sbjct: 348 KDM----VTWNTMISCYAQVGQMDRAVKIFEEM 376
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI YV+ ++D A LFE M +RD VSWT++ING+VR G EA +
Sbjct: 232 MISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELL----------- 280
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-VLSVFMGTALIDLYGKVGCLER 119
NE Y ++ + A + G + K +EI V A+I Y G +
Sbjct: 281 -NEMPYRNIGAQTAMI--SGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINE 337
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL 163
A+ + K MV KD+ TWN MIS A + A+ +F+EM E+ L
Sbjct: 338 ALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDL 381
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
++I +Y K G + A +F M +++ +WN M+S N + EA +F M + L
Sbjct: 10 NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDL- 68
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
++ ++T R VE ELF S+ + + + ++ + G ++EAK
Sbjct: 69 ---FSWTLMITCYTRNGEVEKARELFDSLPCSYR--KGVACWNAMISGYVKKGRVNEAKR 123
Query: 225 FMRSMP 230
MP
Sbjct: 124 LFDEMP 129
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 183/312 (58%), Gaps = 8/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y +G+ + A +F+ M RDVVSWTSII+GFV N EAI +F +M+ N +
Sbjct: 142 LIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENG--IE 199
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVL +CA + G L G+++H ++ + + TALID+Y K GC++ A
Sbjct: 200 PNEVTVASVLRACA---DTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + KDV W A+I+ LAS+ +A+ F+ MK+ ++ +E AVL+A A
Sbjct: 257 LEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNA 316
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV GL LF L K ++ P ++HYGCVVD+L RAG L +A+EF+R MP EPDA +
Sbjct: 317 GLVSEGL-LFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRT 375
Query: 241 LLGACKIHGAVDLCHEVGR--RLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
L+ CKI G V+ + R LL + + G YV+L N++A +W R+ M +
Sbjct: 376 LIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQR 435
Query: 299 GIRKIPAYSLIE 310
G+ K PA S IE
Sbjct: 436 GLMKPPACSRIE 447
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM----GNVNLVRPNE 63
+GD++ A + + + + ++I + + A +F M +V + RP+
Sbjct: 42 SGDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDH 101
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRV 123
TY VL +C+ G GKQ+HG + ++ + ++ ALI LY G A +V
Sbjct: 102 FTYPFVLKACS---KSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKV 158
Query: 124 FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183
F M +DV +W ++I N R EA+ +F M E G+ NE+T +VL ACA +
Sbjct: 159 FDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGAL 218
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G E HS + + ++D+ + G + A E E D V A++
Sbjct: 219 NTG-ERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDET-LEKDVYVWTAIIA 276
Query: 244 ACKIHG 249
HG
Sbjct: 277 GLASHG 282
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 190/307 (61%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K DM A +F+ M +R +++W S+I+G+ +NG E+I +F MM + +P+ A
Sbjct: 234 YAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG--FQPDSA 291
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LSSC+ L G L G +H Y N L+V +GT+LI++Y + G + +A VF
Sbjct: 292 TIVSLLSSCSQL---GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 348
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
SM ++V TW AMIS + ++A+ +F EM+ G R N ITFVAVL+ACA + L++
Sbjct: 349 DSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLID 408
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS-MPFEPDASVLGALLG 243
G +F SM + +VP +EH C+VD+ GRAGLL++A +F++ +P EP +V ++LG
Sbjct: 409 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 468
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC++H DL +V +L ++P++ G YV+LSNI+A R +R +R M ++K
Sbjct: 469 ACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQ 528
Query: 304 PAYSLIE 310
YS IE
Sbjct: 529 VGYSTIE 535
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 125/257 (48%), Gaps = 16/257 (6%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A LF + D + S++ + G + + ++ M+ + + T+ S
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRML--FSGAPQSNYTFTS 194
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
V+ +CA L L LGK++H +++ +++ ALI LY K ++ A +VF +M
Sbjct: 195 VIKACADL---SALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMP 251
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
+ + WN++IS N +E++ +F M E G + + T V++L++C++ ++ G
Sbjct: 252 QRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 311
Query: 189 LFHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247
L G F++ ++ ++++ R G +S+A+E SM E + A++ +
Sbjct: 312 LHDYADGNGFDLNVVLG--TSLINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGM 368
Query: 248 HGAVDLCHEVGRRLLEL 264
HG GR+ +EL
Sbjct: 369 HG-------YGRQAMEL 378
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + G++ A +F++M +R+VV+WT++I+G+ +G +A+ +F M R
Sbjct: 331 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEM--RAYGPR 388
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+V+VLS+CA GL+++G Y L V V ++D++G+ G L
Sbjct: 389 PNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGL----VPGVEHNVCMVDMFGRAGLLN 444
Query: 119 RAIRVFKSMVIKD--VCTWNAMI 139
A + K + K+ W +M+
Sbjct: 445 DAYQFIKKFIPKEPGPAVWTSML 467
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 35/202 (17%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+QVH +I+ + + S + T LI L G + A R+F ++ D +++++ +
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
+ ++ + M G + TF +V+ ACA + LG E+ HS + M
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEI-HSHVMVCGYGSDMYV 226
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMP----------------------------------F 231
++ L +A + AK+ +MP F
Sbjct: 227 QAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGF 286
Query: 232 EPDASVLGALLGACKIHGAVDL 253
+PD++ + +LL +C GA+D
Sbjct: 287 QPDSATIVSLLSSCSQLGALDF 308
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ +GYV G +D A +F+ M +D+VSW S+I+ +V+ +AI +F+ M +V
Sbjct: 246 LFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENE--MVE 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L + L G+ H +I++N +F+GTALID+Y K G LE A
Sbjct: 304 PDETTMVSVLAACASLAD---LQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ F M +DV TW I LA++ +AL +F EM+++G++ N+ TFV+VL AC+R+
Sbjct: 361 MVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACSRS 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G LF M+ +++ P +EH GC++D+L RAGLL +A+EF++ MP +
Sbjct: 421 GLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMPPKEKIIANKT 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC H DL ++ L EL + +++LSN +A +W R+ M E I
Sbjct: 481 LLSACMNHLEYDLGEKIANGLTELSSQSHATHILLSNFYALAGQWAEVAKTRRVMKEIDI 540
Query: 301 RKIPAYSLIE 310
RK+P S ++
Sbjct: 541 RKVPGISSVD 550
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Query: 15 ILLFENMLKRDVVS--------WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66
I +F+ +L + + + W +I F R+ AI ++ + + V P++ TY
Sbjct: 19 IKVFDQVLTQTITTAFIHATPTWNCLIRAFSRSPTPITAILIYNHFIKG-RFVFPDKYTY 77
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126
++L +C + G L GK+VH ++ + + V++G AL+ LYG G + A R+F
Sbjct: 78 PAMLKACWRM---GSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDG 134
Query: 127 MVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186
M +D+ +WN ++ A N E LV+F M +G+ + I+ V V +AC + E G
Sbjct: 135 MPHRDLASWNTLLG--AYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFG 192
Query: 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
E+ H + K + P + ++ + + G + A+ M D L
Sbjct: 193 KEV-HGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYV 251
Query: 247 IHGAVDL 253
G++DL
Sbjct: 252 DMGSIDL 258
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 44/252 (17%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y G + A LF+ M RD+ SW +++ + N E + +FK MM + +
Sbjct: 119 YGSTGQVTDARRLFDGMPHRDLASWNTLLGAYNDNAV--EVLVLFKRMM--YEGIGGDHI 174
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----------- 113
+ V V S+C + GG GK+VHGY+++ I ++ + AL+ +Y K
Sbjct: 175 SMVIVFSACGKI---GGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLF 231
Query: 114 ---------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
+G ++ A +F M +KD+ +WN+MI + K+A+
Sbjct: 232 VEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAI 291
Query: 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVV 210
+F +M+ + + +E T V+VL ACA ++ G L H + + P + + ++
Sbjct: 292 ELFRKMENEMVEPDETTMVSVLAACASLADLQNG-RLAHRFI--IQNNPRQDLFVGTALI 348
Query: 211 DLLGRAGLLSEA 222
D+ + G L EA
Sbjct: 349 DMYAKCGSLEEA 360
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 189/306 (61%), Gaps = 11/306 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
MI Y K GDM A LF+ RDVVSW ++I+G+VR G +A+ +F+ M MG
Sbjct: 217 MITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGE--- 273
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGC 116
+P+ T +S+LS+CA + G + G+++H ++ + I S +G ALID+Y K G
Sbjct: 274 -KPDTVTMLSLLSACA---DSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGS 329
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+ A+ VF M K+V TWN++I LA + EA+ +F +M + ++ +EITFVAVL A
Sbjct: 330 MTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVA 389
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C+ +V+ G E F+ M ++ + P ++HYGC+VD+L RAGLL EA EF+ +M EP+
Sbjct: 390 CSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPV 449
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
+ LLGAC+IHG ++L + LL+ + G +V+LSNI+A + W + ++RK M
Sbjct: 450 IWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMD 509
Query: 297 EAGIRK 302
++G+ K
Sbjct: 510 DSGVNK 515
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM----GNVNLVRPNEA 64
G A L+F+ + D + ++I G + +A+ ++ M G VRP++
Sbjct: 56 GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKR 115
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ VL +CA + G G QVH ++++ F+ ALI ++ G L A +F
Sbjct: 116 TFPFVLRACAAM---GASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALF 172
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+D W+AMIS A A +FDE K L +++ ++TA A+ +
Sbjct: 173 DGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDL----VSWNVMITAYAKLGDMA 228
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGAL 241
ELF + +VV + ++ R G +A E M++M +PD + +L
Sbjct: 229 PARELFDGAPDR-DVVS----WNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSL 283
Query: 242 LGACKIHGAVDLCHEVGRRL 261
L AC G +D GRRL
Sbjct: 284 LSACADSGDMD----AGRRL 299
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD AI +F+ + ++ VSW ++I GF R G + +F M N
Sbjct: 206 LLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEM--QRNGFE 263
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
TY SV S+ AG+ G L GK VH +++++ LS F+G ++D+Y K G + A
Sbjct: 264 ATHFTYSSVFSAIAGI---GALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDA 320
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF + KDV TWN+M+++ A +EA+ F+EM++ G+ N+ITF+++LTAC+
Sbjct: 321 RKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHG 380
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F M+ ++ + P ++HY VVDLLGRAGLL++A F+ MP +P A+V GA
Sbjct: 381 GLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGA 439
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C++H + + EL P G V+L NI+A +W+ A +RK M G+
Sbjct: 440 LLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGV 499
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 500 KKEPACSWVE 509
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 6/224 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A +F+ M RD+ SWTS+I G+ +N EA+ + M+ +
Sbjct: 105 LIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML--RGRFK 162
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T+ S+L + + G +G+Q+H ++ + V++G+AL+D+Y + G ++ A
Sbjct: 163 PNGFTFASLLKAAGASASSG---IGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMA 219
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF + K+ +WNA+I+ A + L+MF EM+ G A T+ +V +A A
Sbjct: 220 IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGI 279
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
+E G + M+ E + ++D+ ++G + +A++
Sbjct: 280 GALEQGKWVHAHMIKSGERLSAFVG-NTILDMYAKSGSMIDARK 322
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y S++++CA + L + +H ++ ++ SVF+ +LI LY K G + A RVF
Sbjct: 67 YHSLITACARYRS---LDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD 123
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M +D+C+W ++I+ A N EAL + M + N TF ++L A + +
Sbjct: 124 GMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGI 183
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
G E H++ K++ + ++D+ R G + A
Sbjct: 184 G-EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMA 219
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 183/313 (58%), Gaps = 11/313 (3%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
GY K+ +++ A ++F M++++V++W +I + +NG EAI +F + + + P
Sbjct: 86 GYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIWPTH 143
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKVGCL 117
TY +VL++C N L LG+Q H ++L+ VF+G +L+D+Y K G +
Sbjct: 144 YTYGNVLNACG---NIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 200
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
+ +VF+ M +D +WNAMI A N R K+AL +F+ M + +T + VL+AC
Sbjct: 201 DDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC 260
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
+ LV+ G FH M + P +HY C+VDLLGRAG L EA+E ++ MP EPD+ +
Sbjct: 261 GHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVL 320
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LLGAC++H V+L RL EL P++ G YV+LSN++A + +W +R++M +
Sbjct: 321 WASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKD 380
Query: 298 AGIRKIPAYSLIE 310
G+ K P S IE
Sbjct: 381 RGVSKQPGCSWIE 393
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVG---- 115
P+E T SV+S+CAGL E G+QVH +++ R+ + + + AL+D+Y K G
Sbjct: 8 PDEVTLSSVMSACAGLAAE---REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWE 64
Query: 116 --CL-------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
C+ E A VF MV K+V WN +I++ A N E
Sbjct: 65 ARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEE 124
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEH 205
+EA+ +F ++K + T+ VL AC +++LG + +L +F+ P +
Sbjct: 125 EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDV 184
Query: 206 Y--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
+ +VD+ + G + + + M + S ++G + A D H R L
Sbjct: 185 FVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML 242
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 185/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY K+ +++ A ++F M++++V++W +I + +NG EAI +F + + +
Sbjct: 325 ILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIW 382
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P TY +VL++C N L LG+Q H ++L+ VF+G +L+D+Y K
Sbjct: 383 PTHYTYGNVLNACG---NIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKT 439
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
G ++ +VF+ M +D +WNAMI A N R K+AL +F+ M + +T + VL
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC + LV+ G FH M + P +HY C+VDLLGRAG L EA+E ++ MP EPD
Sbjct: 500 SACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPD 559
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + +LLGAC++H V+L RL EL P++ G YV+LSN++A + +W +R++
Sbjct: 560 SVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRS 619
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S IE
Sbjct: 620 MKDRGVSKQPGCSWIE 635
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 7/248 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNG--CFGEAICVFKNMMGNVNL 58
++ Y + G D A LFE + D S+ +++ R+G G+A+ M + +
Sbjct: 89 LLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFV 148
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
+ N ++ S LS+CA E L G+QVHG + R+ V +GTAL+D+Y K
Sbjct: 149 L--NAYSFASALSACAA---EKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPV 203
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A RVF +M ++V +WN++I+ N EALV+F EM G +E+T +V++ACA
Sbjct: 204 DARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACA 263
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
G ++ M+ + + M +VD+ + G EA+ SMP S
Sbjct: 264 GLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSET 323
Query: 239 GALLGACK 246
L G K
Sbjct: 324 SILAGYAK 331
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 42/298 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K A +F+ M +R+VVSW S+I + +NG GEA+ +F MM
Sbjct: 192 LVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFF-- 249
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVG---- 115
P+E T SV+S+CAGL E G+QVH +++ R+ + + + AL+D+Y K G
Sbjct: 250 PDEVTLSSVMSACAGLAAE---REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWE 306
Query: 116 --CL-------------------------ERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
C+ E A VF MV K+V WN +I++ A N E
Sbjct: 307 ARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEE 366
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEH 205
+EA+ +F ++K + T+ VL AC +++LG + +L +F+ P +
Sbjct: 367 EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDV 426
Query: 206 Y--GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261
+ +VD+ + G + + + M + S ++G + A D H R L
Sbjct: 427 FVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERML 484
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+ HG +L++ + F+ L+ Y ++G L A RVF + +++ ++NA++S+ A
Sbjct: 36 ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R EA +F+ + + ++ ++ AV+ A AR
Sbjct: 96 LGRPDEARALFEAIPDP----DQCSYNAVVAALAR 126
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
G LRN F AL+ Y ++G + A +F+++ D C++NA++++LA + R
Sbjct: 77 GIPLRN-----TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGH 131
Query: 150 --EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
+AL M N +F + L+ACA + + G E H ++ + +
Sbjct: 132 AGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTG-EQVHGLVARSPHADDVHIGT 190
Query: 208 CVVDLLGRAGLLSEAKEFMRSMP 230
+VD+ + +A+ +MP
Sbjct: 191 ALVDMYAKCERPVDARRVFDAMP 213
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 188/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y KNG +D A +F M+ R+ VSW+++I+GF +NG EA+ +F+NM + ++
Sbjct: 250 LVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASG--IQ 307
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS L +C+ N G L LG+ VHG+I+R + +GTA ID+Y K G L A
Sbjct: 308 PDSGALVSALLACS---NIGFLKLGRSVHGFIVR-RFDFNCILGTAAIDMYSKCGSLASA 363
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + +D+ WNAMI+ ++ R ++AL +F EM E G+R + TF ++L+A + +
Sbjct: 364 QMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHS 423
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ F++ P +HY C+VDLL R+GL+ EA + + SM EP ++ A
Sbjct: 424 GLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVA 483
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C + ++L + +LELQP G ++SN++A ++W++ +RK M ++G
Sbjct: 484 LLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGS 543
Query: 301 RKIPAYSLIE 310
+K+P S IE
Sbjct: 544 KKMPGCSSIE 553
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 152/283 (53%), Gaps = 15/283 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G M A+ +F+ M +RD V+W++++ GFV G +AI +++ M + V+ +E
Sbjct: 153 YARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM--REDGVKGDEV 210
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
+ V+ +C N + +G VHG++LR+ + + V T+L+D+Y K G L+ A RVF
Sbjct: 211 VMIGVIQACTAARN---VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVF 267
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
MV ++ +W+AMIS A N + EAL +F M+ G++ + V+ L AC+ ++
Sbjct: 268 GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLK 327
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
LG + ++ +F+ I+ +D+ + G L+ A + + +M + D + A++
Sbjct: 328 LGRSVHGFIVRRFDFNCILG--TAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIAC 384
Query: 245 CKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL 282
C HG A+ L E+ ++P H +LS + H+GL
Sbjct: 385 CGAHGRGQDALTLFQEMNE--TGMRPDHATFASLLSALSHSGL 425
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI 97
R G A+ VF+ + RP+ T+ LS+CA L G L G+ V
Sbjct: 86 RRGSPASALRVFRAL---PPAARPDSTTFTLALSACARL---GDLRGGESVRDRAFDAGY 139
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157
VF+ ++L+ LY + G + A++VF M +D TW+ M++ S + +A+ M+
Sbjct: 140 KDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRR 199
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG---KFEVVPIMEHYGCVVDLLG 214
M+E G++ +E+ + V+ AC A+ V +G + +L + +VV +VD+
Sbjct: 200 MREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATS----LVDMYA 255
Query: 215 RAGLLSEA 222
+ GLL A
Sbjct: 256 KNGLLDVA 263
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,523,539,958
Number of Sequences: 23463169
Number of extensions: 176531563
Number of successful extensions: 594784
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7805
Number of HSP's successfully gapped in prelim test: 3042
Number of HSP's that attempted gapping in prelim test: 483176
Number of HSP's gapped (non-prelim): 46612
length of query: 311
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 169
effective length of database: 9,027,425,369
effective search space: 1525634887361
effective search space used: 1525634887361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)