BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040965
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%), Gaps = 2/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-LV 59
++D +NG+MD A F+ M DVVSWT++INGF + G +A+ VF M+ N ++
Sbjct: 158 LLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVI 217
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT+VSVLSSCA ++GG+ LGKQ+HGY++ EI+L+ +GTAL+D+YGK G LE
Sbjct: 218 TPNEATFVSVLSSCANF-DQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEM 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F + K VC WNA+IS+LASN R K+AL MF+ MK + N IT +A+LTACAR
Sbjct: 277 ALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACAR 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LV+LG++LF S+ +++++P EHYGCVVDL+GRAGLL +A F++S+PFEPDASVLG
Sbjct: 337 SKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLG 396
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACKIH +L + VG++L+ LQP+HCG+YV LS +A W+ A +RKAM+EAG
Sbjct: 397 ALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAG 456
Query: 300 IRKIPAYSLI 309
IRKIPAYS++
Sbjct: 457 IRKIPAYSVL 466
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 78/296 (26%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL-SSCAGLVNEGGLYLGKQ 87
+ ++I ++ G + ++ +F +M+ + V+PN T+ S++ ++C+ + G
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLAS--HVQPNNLTFPSLIKAACSSF----SVSYGVA 107
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLER---------------------------- 119
+HG L+ + F+ T+ + YG+VG LE
Sbjct: 108 LHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGE 167
Query: 120 ---AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAV 173
A F+ M + DV +W +I+ + +AL++F EM + + NE TFV+V
Sbjct: 168 MDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSV 227
Query: 174 LTACARAQL--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS----------- 220
L++CA + LG ++ ++ K E++ ++D+ G+AG L
Sbjct: 228 LSSCANFDQGGIRLGKQIHGYVMSK-EIILTTTLGTALLDMYGKAGDLEMALTIFDQIRD 286
Query: 221 -----------------------EAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253
E E M+S P+ L A+L AC VDL
Sbjct: 287 KKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDL 342
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
K C +N +I S + K +L +F M ++ N +TF +++ A + V G+ L
Sbjct: 49 KTKCVYNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVAL 108
Query: 190 FHSMLGK-FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
L + F P ++ V G G L +++ + P +LL AC +
Sbjct: 109 HGQALKRGFLWDPFVQ--TSFVRFYGEVGDLESSRKMFDDI-LNPCVVACNSLLDACGRN 165
Query: 249 GAVDLCHEVGRRL 261
G +D E +R+
Sbjct: 166 GEMDYAFEYFQRM 178
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 197/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G MD A+ LF M +++ +SWT++I+G+V+ EA+ +F M + V
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD--VE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + + LS+CA L G L GK +H Y+ + I + +G LID+Y K G +E A
Sbjct: 245 PDNVSLANALSACAQL---GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK++ K V W A+IS A + +EA+ F EM++ G++ N ITF AVLTAC+
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F+SM + + P +EHYGC+VDLLGRAGLL EAK F++ MP +P+A + GA
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L E+G L+ + P H GRYV +NIHA ++W++A + R+ M E G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 301 RKIPAYSLI 309
K+P S I
Sbjct: 482 AKVPGCSTI 490
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 40/268 (14%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A ++F+ + D W +I GF + ++ +++ M+ + N T+ S+L +C
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRML--CSSAPHNAYTFPSLLKAC 125
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------------- 112
+ L Q+H I + V+ +LI+ Y
Sbjct: 126 SNL---SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182
Query: 113 ----------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162
K G ++ A+ +F+ M K+ +W MIS KEAL +F EM+
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD 242
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV-VDLLGRAGLLSE 221
+ + ++ L+ACA+ +E G + HS L K + + GCV +D+ + G + E
Sbjct: 243 VEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEE 300
Query: 222 AKEFMRSMPFEPDASVLGALLGACKIHG 249
A E +++ + AL+ HG
Sbjct: 301 ALEVFKNIK-KKSVQAWTALISGYAYHG 327
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A +F+ M R+VV+WT++I G+V++ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ GT LIDLY K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ ++A +F M + NE+TF+AVL+ACA
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM G+F + P +HY C+VDL GR GLL EAK + MP EP V GA
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C +H +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 541 VKSPGFSWIE 550
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GY +G D A LF+ +DVV+WT++I+GFVRNG EA+ F M V
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG--VA 201
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHG-YILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T VSVL + AG V + + G+ VHG Y+ + VF+G++L+D+YGK C +
Sbjct: 202 ANEMTVVSVLKA-AGKVED--VRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDD 258
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +VF M ++V TW A+I+ + + +++F+EM + + NE T +VL+ACA
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAH 318
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+ G + H + K + ++DL + G L EA
Sbjct: 319 VGALHRGRRV-HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 4/202 (1%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
W S+I F + N V P+ T+ +L + L + Q
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPF----QF 125
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
H +I++ + F+ +LI Y G + A R+F KDV TW AMI N
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185
Query: 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EA+V F EMK+ G+ ANE+T V+VL A + + V G + L V +
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSS 245
Query: 209 VVDLLGRAGLLSEAKEFMRSMP 230
+VD+ G+ +A++ MP
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMP 267
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 201/311 (64%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
MI+ Y + G + A+ LF+++ +D V WT++I+G VRN +A+ +F+ M M NV+
Sbjct: 195 MINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVS-- 252
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T V VLS+C+ L G L LG+ VH ++ + LS F+G ALI++Y + G +
Sbjct: 253 -ANEFTAVCVLSACSDL---GALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINE 308
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF+ M KDV ++N MIS LA + EA+ F +M +G R N++T VA+L AC+
Sbjct: 309 ARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSH 368
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+++GLE+F+SM F V P +EHYGC+VDLLGR G L EA F+ ++P EPD +LG
Sbjct: 369 GGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLG 428
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL ACKIHG ++L ++ +RL E + G YV+LSN++A +W +T++R++M ++G
Sbjct: 429 TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSG 488
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 489 IEKEPGCSTIE 499
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +SVL SC + + +H I+R F+ LI + + ++ A VF
Sbjct: 31 TLISVLRSCKNIAHV------PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVF 84
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ +V + AMI S+ R + + ++ M + + +VL AC E
Sbjct: 85 SYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE 144
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+ ++ G V + ++++ G++G L AK+ MP
Sbjct: 145 IHAQVLKLGFGSSRSVGLK-----MMEIYGKSGELVNAKKMFDEMP 185
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G++ A F+ M RD +SWT +I+G++R GCF E++ +F+ M +
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-- 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L +G+ + YI +N+I V +G ALID+Y K GC E+A
Sbjct: 366 PDEFTMVSVLTACAHL---GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D TW AM+ LA+N + +EA+ +F +M++ ++ ++IT++ VL+AC +
Sbjct: 423 QKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M + P + HYGC+VD+LGRAGL+ EA E +R MP P++ V GA
Sbjct: 483 GMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGA 542
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H + +++LEL+P + Y +L NI+AG +RW ++R+ +V+ I
Sbjct: 543 LLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI 602
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 603 KKTPGFSLIE 612
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 37/252 (14%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G MD A +F+ K DV SW +I+G+ R + E+I + M NLV P T +
Sbjct: 184 GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM--ERNLVSPTSVTLLL 241
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
VLS+C+ + ++ L K+VH Y+ + S+ + AL++ Y G ++ A+R+F+SM
Sbjct: 242 VLSACSKVKDKD---LCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK 298
Query: 129 IKDVCTWNAMISSLASNSREK-------------------------------EALVMFDE 157
+DV +W +++ K E+L +F E
Sbjct: 299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ G+ +E T V+VLTACA +E+G E + + K ++ + ++D+ + G
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKCG 417
Query: 218 LLSEAKEFMRSM 229
+A++ M
Sbjct: 418 CSEKAQKVFHDM 429
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
G + A LF + + DVV W ++I G+ + C GE + ++ NM+ V P+ T+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG--VTPDSHTFPF 139
Query: 69 VLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127
+L+ GL +GG L GK++H ++++ + ++++ AL+ +Y G ++ A VF
Sbjct: 140 LLN---GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR 196
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+DV +WN MIS +E++ + EM+ + +T + VL+AC++ + +L
Sbjct: 197 CKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDL-C 255
Query: 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ H + + + P + +V+ G + A RSM
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ M KRD VSW ++I G+ ++G EA+ +F M R
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG--R 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +++ S LS+CA +V L LGKQ+HG +++ F+G AL+ +Y K G +E A
Sbjct: 407 LNRSSFSSALSTCADVV---ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD+ +WN MI+ + + + AL F+ MK +GL+ ++ T VAVL+AC+
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F++M + V+P +HY C+VDLLGRAGLL +A M++MPFEPDA++ G
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++HG +L ++ ++P++ G YV+LSN++A RW LR M + G+
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 644 KKVPGYSWIE 653
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 43/269 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GYV+N ++ A LFE M +RDV SW ++++G+ +NGC +A VF M
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM------PE 185
Query: 61 PNEATYVSVLSSC---AGLVNEGGLYLGKQ----------VHGYILRNEI---------- 97
N+ ++ ++LS+ + + L+ ++ + G++ + +I
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 98 -VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
V V +I Y + G ++ A ++F ++DV TW AM+S N +EA +FD
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLG 214
+M E+ NE+++ A+L + + +E+ EL F+V+P + + ++
Sbjct: 306 KMPER----NEVSWNAMLAGYVQGERMEMAKEL-------FDVMPCRNVSTWNTMITGYA 354
Query: 215 RAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G +SEAK MP S + G
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 112/290 (38%), Gaps = 87/290 (30%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY++N ++ A LF+ M +R+ VSW +++ G+V+ GE + + K + V
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ----GERMEMAKELFD----VM 338
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P RN V +I Y + G + A
Sbjct: 339 P-------------------------------CRN-----VSTWNTMITGYAQCGKISEA 362
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M +D +W AMI+ + + EAL +F +M+ +G R N +F + L+ CA
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 181 QLVELGLE-----------------------------------LFHSMLGKFEVVPIMEH 205
+ELG + LF M GK ++V
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVS---- 477
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVD 252
+ ++ R G A F SM E PD + + A+L AC G VD
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
D+ W I+ ++R G EA+ VFK M R + +Y ++S G + G L
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRM------PRWSSVSYNGMIS---GYLRNGEFEL 113
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
+++ + ++V +I Y + L +A +F+ M +DVC+WN M+S A
Sbjct: 114 ARKLFDEMPERDLV----SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ 169
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +A +FD M EK N++++ A+L+A + +E LF S + +V
Sbjct: 170 NGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSR-ENWALVS--- 221
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
+ C++ + + EA++F SM
Sbjct: 222 -WNCLLGGFVKKKKIVEARQFFDSM 245
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61
I Y++ G + A+ +F+ M + VS+ +I+G++RNG F A +F M
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM--------- 121
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
E VS G V L +++ + ++ ++ Y + GC++ A
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC----SWNTMLSGYAQNGCVDDAR 177
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181
VF M K+ +WNA++S+ NS+ +EA ++F + L +++ +L + +
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKK 233
Query: 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE 232
+ + F SM + +VV + ++ ++G + EA++ P +
Sbjct: 234 KIVEARQFFDSMNVR-DVVS----WNTIITGYAQSGKIDEARQLFDESPVQ 279
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
I Y + G A+RVFK M ++N MIS N + A +FDEM E+ L
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL---- 126
Query: 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME--HYGCVVDLLGRAGLLSEAKEF 225
+++ ++ R + + EL FE++P + + ++ + G + +A+
Sbjct: 127 VSWNVMIKGYVRNRNLGKAREL-------FEIMPERDVCSWNTMLSGYAQNGCVDDARSV 179
Query: 226 MRSMPFEPDASVLGALLGA 244
MP + D S ALL A
Sbjct: 180 FDRMPEKNDVS-WNALLSA 197
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +++A +F+ M R++ +W+ +ING+ +N CF +AI +F+ M V
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM--KREGVV 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L G++ + Y++++ + +++ +GTAL+D++ + G +E+A
Sbjct: 247 ANETVMVSVISSCAHL---GALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + D +W+++I LA + +A+ F +M G ++TF AVL+AC+
Sbjct: 304 IHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHG 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLE++ +M + P +EHYGC+VD+LGRAG L+EA+ F+ M +P+A +LGA
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGA 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKI+ ++ VG L++++P+H G YV+LSNI+A +W++ LR M E +
Sbjct: 424 LLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 484 KKPPGWSLIE 493
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR 164
T+++ Y K G +E A +F M +++ TW+ MI+ A N+ ++A+ +F+ MK +G+
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224
ANE V+V+++CA +E G + ++ V ++ +VD+ R G + +A
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIH 305
Query: 225 FMRSMPFEPDASVLGALLGACKIHG 249
+P E D+ +++ +HG
Sbjct: 306 VFEGLP-ETDSLSWSSIIKGLAVHG 329
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL------YGK-VGCLER 119
+++L SC+ + K +HG++LR ++ VF+ + L+ L + K L
Sbjct: 16 LALLQSCSSFSDL------KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGY 69
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +F + ++ +N +I ++ + +A + +M + + + ITF ++ A +
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ V +G E HS + +F + +V + G ++ A M F S
Sbjct: 130 MECVLVG-EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+ G CK G V+ E+ E+ ++ + ++ N +A + +A DL + M G
Sbjct: 189 MVAGYCKC-GMVENAREM---FDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREG 244
Query: 300 I 300
+
Sbjct: 245 V 245
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++ GD +A +LF+ M +R VVSW ++I+G+ NG F +A+ VF+ M +R
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM--KKGDIR 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LG+ +H Y + I + +G+ALID+Y K G +E+A
Sbjct: 272 PNYVTLVSVLPAISRL---GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + ++V TW+AMI+ A + + +A+ F +M++ G+R +++ ++ +LTAC+
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGR+GLL EA+EF+ +MP +PD + A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ G V++ V L+++ P G YV LSN++A W+ +++R M E I
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508
Query: 301 RKIPAYSLIE 310
RK P SLI+
Sbjct: 509 RKDPGCSLID 518
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 55/288 (19%)
Query: 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGE--AICVFKNMMGNVNLVRPNEATYV 67
D+D A +F M +R+ SW +II GF + AI +F MM + V PN T+
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSD-EFVEPNRFTFP 132
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLS---------------------- 100
SVL +CA G + GKQ+HG L+ +E V+S
Sbjct: 133 SVLKACA---KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 101 ------------------VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142
+ + +ID Y ++G + A +F M + V +WN MIS
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202
+ N K+A+ +F EMK+ +R N +T V+VL A +R +ELG E H + + + I
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLH-LYAEDSGIRI 307
Query: 203 MEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ G ++D+ + G++ +A +P E + A++ IHG
Sbjct: 308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHG 354
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 196/308 (63%), Gaps = 5/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M +++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS-VK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A I++Y K G ++ A
Sbjct: 213 PNHITVVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 269
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F+ + +++C+WN+MI SLA++ + EAL +F +M +G + + +TFV +L AC
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G ELF SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L +L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 390 TLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 449
Query: 300 IRKIPAYS 307
+ K YS
Sbjct: 450 MTKAAGYS 457
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+H R+ F T LI Y K+G L A RVF M +DV WNAMI+
Sbjct: 104 LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 163
Query: 148 EKEALVMFDEM--------------------------------KEKGLRANEITFVAVLT 175
K A+ +FD M K+K ++ N IT V+VL
Sbjct: 164 MKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLP 223
Query: 176 ACARAQLVELG--LELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPF 231
ACA +E+G LE + G F+ + Y C +++ + G++ AK +
Sbjct: 224 ACANLGELEIGRRLEGYARENGFFDNI-----YVCNATIEMYSKCGMIDVAKRLFEELGN 278
Query: 232 EPDASVLGALLGACKIHGAVD 252
+ + +++G+ HG D
Sbjct: 279 QRNLCSWNSMIGSLATHGKHD 299
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 243 bits (621), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 194/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84
+V W ++I G+ G A +++ M + LV P+ TY ++ + + + + L
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTTMAD---VRL 139
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
G+ +H ++R+ +++ +L+ LY G + A +VF M KD+ WN++I+ A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N + +EAL ++ EM KG++ + T V++L+ACA+ + LG + H + K + +
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV-HVYMIKVGLTRNLH 258
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229
++DL R G + EAK M
Sbjct: 259 SSNVLLDLYARCGRVEEAKTLFDEM 283
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G ++ A LF+ M+ ++ VSWTS+I G NG EAI +FK M L+
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLL- 321
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E T+V +L +C+ G+V EG Y + Y + I G ++DL + G ++
Sbjct: 322 PCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI---EHFG-CMVDLLARAGQVK 377
Query: 119 RAIRVFKSMVIK-DVCTWNAMI 139
+A KSM ++ +V W ++
Sbjct: 378 KAYEYIKSMPMQPNVVIWRTLL 399
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G M+ A +FE + KRD+VSW S+I ++ AI +F+ M V+ +
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM--GVSGIC 539
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L +E GK +HG+++++ + V+ + LID+Y K G L+ A
Sbjct: 540 YDCVSISAALSACANLPSES---FGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAA 596
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACAR 179
+ VFK+M K++ +WN++I++ ++ + K++L +F EM EK G+R ++ITF+ ++++C
Sbjct: 597 MNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCH 656
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ G+ F SM + + P EHY CVVDL GRAG L+EA E ++SMPF PDA V G
Sbjct: 657 VGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWG 716
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V+L +L++L P + G YV++SN HA W T +R M E
Sbjct: 717 TLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKERE 776
Query: 300 IRKIPAYSLIE 310
++KIP YS IE
Sbjct: 777 VQKIPGYSWIE 787
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 133/261 (50%), Gaps = 11/261 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K + A +F DVV +T++I+G++ NG + +++ +F+ ++ +
Sbjct: 381 LIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVK--IS 438
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T VS+L L+ L LG+++HG+I++ +G A+ID+Y K G + A
Sbjct: 439 PNEITLVSILPVIGILL---ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLA 495
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F+ + +D+ +WN+MI+ A + A+ +F +M G+ + ++ A L+ACA
Sbjct: 496 YEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANL 555
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
G + H + K + + ++D+ + G L A ++M E + +
Sbjct: 556 PSESFG-KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNS 613
Query: 241 LLGACKIHGAV--DLC--HEV 257
++ AC HG + LC HE+
Sbjct: 614 IIAACGNHGKLKDSLCLFHEM 634
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 10/226 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K G D A LF M + D V+W +I+G+V++G E++ F M+ + V
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG--VL 337
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ S+L S + N L KQ+H YI+R+ I L +F+ +ALID Y K + A
Sbjct: 338 PDAITFSSLLPSVSKFEN---LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMA 394
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F DV + AMIS N ++L MF + + + NEIT V++L
Sbjct: 395 QNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGIL 454
Query: 181 QLVELGLELFHSMLGK-FEVVPIMEHYGC-VVDLLGRAGLLSEAKE 224
++LG EL ++ K F+ + GC V+D+ + G ++ A E
Sbjct: 455 LALKLGRELHGFIIKKGFDN---RCNIGCAVIDMYAKCGRMNLAYE 497
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 9/186 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y++ G +D LF+ +L++D V W ++NG+ + G I F M ++ +
Sbjct: 179 LIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM--RMDQIS 236
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T+ VLS CA L++ LG Q+HG ++ + + + +L+ +Y K G +
Sbjct: 237 PNAVTFDCVLSVCASKLLID-----LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A ++F+ M D TWN MIS + +E+L F EM G+ + ITF ++L + +
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Query: 179 RAQLVE 184
+ + +E
Sbjct: 352 KFENLE 357
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 120/273 (43%), Gaps = 42/273 (15%)
Query: 20 NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79
++ + + W SII+ FVRNG +A+ + M+ V P+ +T+ ++ +C L N
Sbjct: 97 DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKML--CFGVSPDVSTFPCLVKACVALKNF 154
Query: 80 GGL-YLGKQVHGYILR-NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNA 137
G+ +L V + NE F+ ++LI Y + G ++ ++F ++ KD WN
Sbjct: 155 KGIDFLSDTVSSLGMDCNE-----FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNV 209
Query: 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL-------- 189
M++ A + F M+ + N +TF VL+ CA L++LG++L
Sbjct: 210 MLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSG 269
Query: 190 -------------FHSMLGKFE----VVPIMEH-----YGCVVDLLGRAGLLSEAKEFMR 227
+S G+F+ + +M + C++ ++GL+ E+ F
Sbjct: 270 VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFY 329
Query: 228 SMPFE---PDASVLGALLGACKIHGAVDLCHEV 257
M PDA +LL + ++ C ++
Sbjct: 330 EMISSGVLPDAITFSSLLPSVSKFENLEYCKQI 362
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLS----SCAGLVNEGGLYLGKQVHGYILRNEI 97
F AI +K + N R E T LS +C+ N L GKQVH +++ N I
Sbjct: 10 FAPAIAPYKKSLPLRNSSRFLEETIPRRLSLLLQACS---NPNLLRQGKQVHAFLIVNSI 66
Query: 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMF 155
+ ++ +Y G ++F + ++ + WN++ISS N +AL +
Sbjct: 67 SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFY 126
Query: 156 DEMKEKGLRANEITFVAVLTAC 177
+M G+ + TF ++ AC
Sbjct: 127 FKMLCFGVSPDVSTFPCLVKAC 148
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+DGY + D ++A + +M ++D+V+W ++I+ + +NG EA+ VF + N+ +
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM-K 362
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N+ T VS LS+CA + G L LG+ +H YI ++ I ++ + +ALI +Y K G LE++
Sbjct: 363 LNQITLVSTLSACAQV---GALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF S+ +DV W+AMI LA + EA+ MF +M+E ++ N +TF V AC+
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ LFH M + +VP +HY C+VD+LGR+G L +A +F+ +MP P SV GA
Sbjct: 480 GLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 539
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKIH ++L RLLEL+P++ G +V+LSNI+A L +W ++LRK M G+
Sbjct: 540 LLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 600 KKEPGCSSIE 609
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 43/293 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y GD+DSA +F + ++DVVSW S+INGFV+ G +A+ +FK M V+
Sbjct: 172 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED--VK 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T V VLS+CA + N L G+QV YI N + +++ + A++D+Y K G +E A
Sbjct: 230 ASHVTMVGVLSACAKIRN---LEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286
Query: 121 IRVF-------------------------------KSMVIKDVCTWNAMISSLASNSREK 149
R+F SM KD+ WNA+IS+ N +
Sbjct: 287 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN 346
Query: 150 EALVMFDEMK-EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGC 208
EAL++F E++ +K ++ N+IT V+ L+ACA+ +ELG HS + K +
Sbjct: 347 EALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSA 405
Query: 209 VVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHEV 257
++ + + G L +++E S+ + D V A++G +HG AVD+ +++
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 128/259 (49%), Gaps = 10/259 (3%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
++ A +F+ + K + +W ++I + +I F +M+ PN+ T+
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY-PNKYTFPF 136
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
++ + A + L LG+ +HG +++ + VF+ +LI Y G L+ A +VF ++
Sbjct: 137 LIKAAAEV---SSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
KDV +WN+MI+ +AL +F +M+ + ++A+ +T V VL+ACA+ + +E G +
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
+ S + + V + ++D+ + G + +AK +M + + + L G
Sbjct: 254 VC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY---- 308
Query: 249 GAVDLCHEVGRRLLELQPK 267
A+ +E R +L P+
Sbjct: 309 -AISEDYEAAREVLNSMPQ 326
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY+++G +D+A +F+ M +RD++SWT++INGFV+ G EA+ F+ M ++ V+
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM--QISGVK 203
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ ++ L++C L G L G VH Y+L + +V + +LIDLY + GC+E A
Sbjct: 204 PDYVAIIAALNACTNL---GALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFA 260
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF +M + V +WN++I A+N E+LV F +M+EKG + + +TF LTAC+
Sbjct: 261 RQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHV 320
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL F M + + P +EHYGC+VDL RAG L +A + ++SMP +P+ V+G+
Sbjct: 321 GLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGS 380
Query: 241 LLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL AC HG + L + + L +L K YV+LSN++A +W A+ +R+ M G
Sbjct: 381 LLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 440
Query: 300 IRKIPAYSLIE 310
++K P +S IE
Sbjct: 441 LKKQPGFSSIE 451
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85
VSWTS IN RNG EA F +M + V PN T++++LS C G G LG
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDM--TLAGVEPNHITFIALLSGC-GDFTSGSEALG 92
Query: 86 KQVHGY-----ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMIS 140
+HGY + RN V +GTA+I +Y K G ++A VF M K+ TWN MI
Sbjct: 93 DLLHGYACKLGLDRNH----VMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148
Query: 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+ + A MFD+M E+ L I++ A++ + E L F M
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDL----ISWTAMINGFVKKGYQEEALLWFREM 197
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 200/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+GD+ SA L+F+ M +RDVV+W+S+I+G+V+ G + +A+ +F MM + +
Sbjct: 180 ILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMM-RMGSSK 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE T VSV+ +CA L G L GK VH YIL + L+V + T+LID+Y K G + A
Sbjct: 239 ANEVTMVSVICACAHL---GALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDA 295
Query: 121 IRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
VF +K D WNA+I LAS+ +E+L +F +M+E + +EITF+ +L AC+
Sbjct: 296 WSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 355
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
LV+ F S L + P EHY C+VD+L RAGL+ +A +F+ MP +P S+L
Sbjct: 356 HGGLVKEAWHFFKS-LKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSML 414
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALL C HG ++L VG++L+ELQP + GRYV L+N++A +++ A +R+AM +
Sbjct: 415 GALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKK 474
Query: 299 GIRKIPAYSLIE 310
G++KI +S+++
Sbjct: 475 GVKKIAGHSILD 486
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 50/331 (15%)
Query: 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67
+GD+D A + W +I GF + ++I V+ M+ L+ P+ TY
Sbjct: 55 SGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQML-RFGLL-PDHMTYP 112
Query: 68 SVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG--------------- 112
++ S + L N LG +H ++++ + +F+ LI +YG
Sbjct: 113 FLMKSSSRLSNRK---LGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEM 169
Query: 113 ----------------KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD 156
K G + A VF M +DV TW++MI +AL +FD
Sbjct: 170 PHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFD 229
Query: 157 EMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLG-KFEVVPIMEHYGCVVDLLG 214
+M G +ANE+T V+V+ ACA + G + +L + I++ ++D+
Sbjct: 230 QMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQ--TSLIDMYA 287
Query: 215 RAGLLSEAKE-FMRSMPFEPDASVLGALLGACKIHG----AVDLCHEVGRRLLELQPKHC 269
+ G + +A F R+ E DA + A++G HG ++ L H++ R ++ P
Sbjct: 288 KCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKM--RESKIDPDEI 345
Query: 270 GRYVVLSNI-HAGL--ERWNRATDLRKAMVE 297
+L+ H GL E W+ L+++ E
Sbjct: 346 TFLCLLAACSHGGLVKEAWHFFKSLKESGAE 376
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 185/316 (58%), Gaps = 11/316 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY +A L+F M +R+VVSW ++I G+ +NG EA+ +F + V
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESVC 383
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS------VFMGTALIDLYGKV 114
P ++ ++L +CA L L+LG Q H ++L++ +F+G +LID+Y K
Sbjct: 384 PTHYSFANILKACADLAE---LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKC 440
Query: 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174
GC+E VF+ M+ +D +WNAMI A N EAL +F EM E G + + IT + VL
Sbjct: 441 GCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVL 500
Query: 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD 234
+AC A VE G F SM F V P+ +HY C+VDLLGRAG L EAK + MP +PD
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPD 560
Query: 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294
+ + G+LL ACK+H + L V +LLE++P + G YV+LSN++A L +W ++RK+
Sbjct: 561 SVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKS 620
Query: 295 MVEAGIRKIPAYSLIE 310
M + G+ K P S I+
Sbjct: 621 MRKEGVTKQPGCSWIK 636
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ G K G +D A LF +M +RD +W S+++GF ++ EA+C F MM V
Sbjct: 92 VVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA-MMHKEGFVL 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ SVLS+C+GL + G QVH I ++ + V++G+AL+D+Y K G + A
Sbjct: 151 -NEYSFASVLSACSGL---NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDA 206
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M ++V +WN++I+ N EAL +F M E + +E+T +V++ACA
Sbjct: 207 QRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASL 266
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
+++G E+ ++ ++ + VD+ + + EA+ SMP
Sbjct: 267 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 151/326 (46%), Gaps = 54/326 (16%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G+++ A +F+ M R+VVSW S+I F +NG EA+ VF+ M+ + V
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES--RVE 250
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYI-----LRNEIVLSVFMGTALIDLYGKVG 115
P+E T SV+S+CA L + +G++VHG + LRN+I+LS A +D+Y K
Sbjct: 251 PDEVTLASVISACASL---SAIKVGQEVHGRVVKNDKLRNDIILS----NAFVDMYAKCS 303
Query: 116 CLERAIRVFKSMVIKDV-------------------------------CTWNAMISSLAS 144
++ A +F SM I++V +WNA+I+
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF-HSMLGKFEVVPIM 203
N +EAL +F +K + + +F +L ACA + LG++ H + F+
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423
Query: 204 EHY----GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259
E ++D+ + G + E R M E D A++ +G + E+ R
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 260 RLLEL--QPKHCGRYVVLSNI-HAGL 282
+LE +P H VLS HAG
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGF 508
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 39/218 (17%)
Query: 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMI 139
G L G+QV + + I + +++ K+G L+ A +F+SM +D CTWN+M+
Sbjct: 69 GSLEDGRQVFDKMPQRNI----YTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124
Query: 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV 199
S A + R +EAL F M ++G NE +F +VL+AC+ + G+++ HS++ K
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV-HSLIAKSPF 183
Query: 200 VPIMEHYGCVVDLLGRAGLLSEAKE-------------------FMRSMP---------- 230
+ + +VD+ + G +++A+ F ++ P
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQM 243
Query: 231 -----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263
EPD L +++ AC A+ + EV R+++
Sbjct: 244 MLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 7/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY ++GD+ +A+ LFE+M +RDV SW +I+ +NG F EA+ +F+ M+ N +R
Sbjct: 199 MLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMI-NEPSIR 257
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T V VLS+CA G L L K +H + R ++ VF+ +L+DLYGK G LE A
Sbjct: 258 PNEVTVVCVLSACA---QTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 314
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE---KGLRANEITFVAVLTAC 177
VFK K + WN+MI+ A + R +EA+ +F+EM + ++ + ITF+ +L AC
Sbjct: 315 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNAC 374
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LV G F M +F + P +EHYGC++DLLGRAG EA E M +M + D ++
Sbjct: 375 THGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAI 434
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
G+LL ACKIHG +DL + L+ L P + G +++N++ + W A RK +
Sbjct: 435 WGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKH 494
Query: 298 AGIRKIPAYSLIE 310
K P +S IE
Sbjct: 495 QNAYKPPGWSRIE 507
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 43/258 (16%)
Query: 49 FKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108
F +M N ++ RPN Y VL S L + VH ++ ++ L V + TAL+
Sbjct: 112 FFRLMVNRSVPRPNHFIYPLVLKSTPYL---SSAFSTPLVHTHLFKSGFHLYVVVQTALL 168
Query: 109 DLYGK-VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK------ 161
Y V + A ++F M ++V +W AM+S A + A+ +F++M E+
Sbjct: 169 HSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWN 228
Query: 162 --------------------------GLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
+R NE+T V VL+ACA+ ++L + H+
Sbjct: 229 AILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGI-HAFAY 287
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255
+ ++ + +VDL G+ G L EA + M + + +++ +HG +
Sbjct: 288 RRDLSSDVFVSNSLVDLYGKCGNLEEASSVFK-MASKKSLTAWNSMINCFALHGRSEEAI 346
Query: 256 EVGRRLLEL-----QPKH 268
V +++L +P H
Sbjct: 347 AVFEEMMKLNINDIKPDH 364
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 185/315 (58%), Gaps = 8/315 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM---GNVN 57
+++ Y K G +D A LF+ M +R+V+SW+ +ING+V G + EA+ +F+ M N
Sbjct: 134 VVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEA 193
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
VRPNE T +VLS+C L G L GK VH YI + + + + +GTALID+Y K G L
Sbjct: 194 FVRPNEFTMSTVLSACGRL---GALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 118 ERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLT 175
ERA RVF ++ KDV ++AMI LA E +F EM + N +TFV +L
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILG 310
Query: 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA 235
AC L+ G F M+ +F + P ++HYGC+VDL GR+GL+ EA+ F+ SMP EPD
Sbjct: 311 ACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDV 370
Query: 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
+ G+LL ++ G + C +RL+EL P + G YV+LSN++A RW +R M
Sbjct: 371 LIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEM 430
Query: 296 VEAGIRKIPAYSLIE 310
GI K+P S +E
Sbjct: 431 EVKGINKVPGCSYVE 445
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 45/275 (16%)
Query: 22 LKRDVVSWTSIINGFVRNGCFGE---AICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78
LK + W II V N + I V+ M + V P+ T+ +L S N
Sbjct: 20 LKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNH--RVSPDFHTFPFLLPS---FHN 74
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
L LG++ H IL + F+ T+L+++Y G L A RVF KD+ WN++
Sbjct: 75 PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSV 134
Query: 139 ISSLASNSREKEALVMFDEMKEKG------------------------------------ 162
+++ A +A +FDEM E+
Sbjct: 135 VNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAF 194
Query: 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222
+R NE T VL+AC R +E G + H+ + K+ V + ++D+ + G L A
Sbjct: 195 VRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERA 253
Query: 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257
K ++ + D A++ ++G D C ++
Sbjct: 254 KRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQL 288
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+NG++D+A FE M ++++VSW +II+G V+ F EAI VF +M V
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG-VN 467
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T +S+ S+C L G L L K ++ YI +N I L V +GT L+D++ + G E A
Sbjct: 468 ADGVTMMSIASACGHL---GALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F S+ +DV W A I ++A + A+ +FD+M E+GL+ + + FV LTAC+
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G E+F+SML V P HYGC+VDLLGRAGLL EA + + MP EP+ + +
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++ G V++ ++ L P+ G YV+LSN++A RWN +R +M E G+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704
Query: 301 RKIPAYSLIE 310
RK P S I+
Sbjct: 705 RKPPGTSSIQ 714
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y + G++DSA +F+ M +R+VVSWTS+I G+ R +A+ +F M+ + V PN
Sbjct: 179 YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE-VTPNSV 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T V V+S+CA L + L G++V+ +I + I ++ M +AL+D+Y K ++ A R+F
Sbjct: 238 TMVCVISACAKLED---LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
++ NAM S+ +EAL +F+ M + G+R + I+ ++ +++C++
Sbjct: 295 DEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y+K +D A LF+ ++ ++ + +VR G EA+ VF MM + VR
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG--VR 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S +SSC+ L N + GK HGY+LRN + ALID+Y K + A
Sbjct: 335 PDRISMLSAISSCSQLRN---ILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
R+F M K V TWN++++ N A F+ M EK N +++ +++ +
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK----NIVSWNTIISGLVQG 447
Query: 181 QLVELGLELFHSMLGK 196
L E +E+F SM +
Sbjct: 448 SLFEEAIEVFCSMQSQ 463
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88
+ S+I G+ +G EAI +F MM + + P++ T+ LS+CA +G G Q+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSG--ISPDKYTFPFGLSACAKSRAKGN---GIQI 156
Query: 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSRE 148
HG I++ +F+ +L+ Y + G L+ A +VF M ++V +W +MI A
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216
Query: 149 KEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELF 190
K+A+ +F M +++ + N +T V V++ACA+ + +E G +++
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 201/312 (64%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
++ GY K G+MD A L E M R+ VSWT +I+G+ ++G EAI VF+ M+ +
Sbjct: 188 LLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRML--MEN 245
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V P+E T ++VLS+CA L G L LG+++ Y+ + +V + A+ID+Y K G +
Sbjct: 246 VEPDEVTLLAVLSACADL---GSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A+ VF+ + ++V TW +I+ LA++ EAL MF+ M + G+R N++TF+A+L+AC+
Sbjct: 303 KALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACS 362
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
V+LG LF+SM K+ + P +EHYGC++DLLGRAG L EA E ++SMPF+ +A++
Sbjct: 363 HVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIW 422
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LL A +H ++L L++L+P + G Y++L+N+++ L RW+ + +R M
Sbjct: 423 GSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGI 482
Query: 299 GIRKIPAYSLIE 310
G++K+ S IE
Sbjct: 483 GVKKMAGESSIE 494
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 37/196 (18%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P+ T+ VL V ++ G+Q+HG ++ SV + T LI +Y G L
Sbjct: 113 KPDTFTFPFVLKIA---VRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGD 169
Query: 120 AIRVFKSMVIKDVCTWNAM---------------------------------ISSLASNS 146
A ++F M++KDV WNA+ IS A +
Sbjct: 170 ARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSG 229
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
R EA+ +F M + + +E+T +AVL+ACA +ELG E S + + +
Sbjct: 230 RASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG-ERICSYVDHRGMNRAVSLN 288
Query: 207 GCVVDLLGRAGLLSEA 222
V+D+ ++G +++A
Sbjct: 289 NAVIDMYAKSGNITKA 304
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K + A L+F+++ +R VSWT++I+G+V+ G G + +F M G+ NL R
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGS-NL-R 449
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+++T+ +VL + A L LGKQ+H +I+R+ + +VF G+ L+D+Y K G ++ A
Sbjct: 450 ADQSTFATVLKASASF---ASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 506
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++VF+ M ++ +WNA+IS+ A N + A+ F +M E GL+ + ++ + VLTAC+
Sbjct: 507 VQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHC 566
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G E F +M + + P +HY C++DLLGR G +EA++ M MPFEPD + +
Sbjct: 567 GFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSS 626
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+L AC+IH L +L ++ + YV +SNI+A W + D++KAM E G
Sbjct: 627 VLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERG 686
Query: 300 IRKIPAYSLIE 310
I+K+PAYS +E
Sbjct: 687 IKKVPAYSWVE 697
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 5/191 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+VK GD+ SA LF+ M R VV+WT ++ + RN F EA +F+ M + +
Sbjct: 85 MISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL 144
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA--LIDLYGKVGCLE 118
P+ T+ ++L C V + + QVH + ++ + F+ + L+ Y +V L+
Sbjct: 145 PDHVTFTTLLPGCNDAVPQNAV---GQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLD 201
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +F+ + KD T+N +I+ + E++ +F +M++ G + ++ TF VL A
Sbjct: 202 LACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV 261
Query: 179 RAQLVELGLEL 189
LG +L
Sbjct: 262 GLHDFALGQQL 272
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 11/251 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM--MGNVNL 58
++D Y K+ + +LF+ M + D VS+ +I+ + + + ++ F+ M MG
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P + ++LS A L L +G+Q+H L + +G +L+D+Y K E
Sbjct: 351 NFP----FATMLSIAANL---SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A +FKS+ + +W A+IS L +F +M+ LRA++ TF VL A A
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+ LG +L ++ + + G +VD+ + G + +A + MP + +A
Sbjct: 464 SFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSW 521
Query: 239 GALLGACKIHG 249
AL+ A +G
Sbjct: 522 NALISAHADNG 532
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 10/253 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y + +D A +LFE + ++D V++ ++I G+ ++G + E+I +F M + + +
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH--Q 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P++ T+ VL + GL + LG+Q+H + +G ++D Y K +
Sbjct: 248 PSDFTFSGVLKAVVGLHD---FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M D ++N +ISS + + + +L F EM+ G F +L+ A
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+++G +L L + H G +VD+ + + EA+ +S+P S
Sbjct: 365 SSLQMGRQLHCQAL--LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTA 422
Query: 240 ALLGACK--IHGA 250
+ G + +HGA
Sbjct: 423 LISGYVQKGLHGA 435
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+GY+ G+++ A LF M +D++SWT++I G+ +N + EAI VF MM +
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEG--II 284
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T +V+S+CA L G L +GK+VH Y L+N VL V++G+AL+D+Y K G LERA
Sbjct: 285 PDEVTMSTVISACAHL---GVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERA 341
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ K++ WN++I LA++ +EAL MF +M+ + ++ N +TFV+V TAC A
Sbjct: 342 LLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHA 401
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G ++ SM+ + +V +EHYG +V L +AGL+ EA E + +M FEP+A + GA
Sbjct: 402 GLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGA 461
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH + + +L+ L+P + G Y +L +++A RW ++R M E GI
Sbjct: 462 LLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGI 521
Query: 301 RKI-PAYSLI 309
KI P S I
Sbjct: 522 EKICPGTSSI 531
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/367 (19%), Positives = 131/367 (35%), Gaps = 110/367 (29%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+D A+ M + +V + ++ GFV ++ ++ M+ + V P+ TY S++
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDS--VSPSSYTYSSLV 133
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ + G+ + +I + V + T LID Y G + A +VF M +
Sbjct: 134 KASSFASR-----FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPER 188
Query: 131 DVCTWNAMIS------------SLASNSREK----------------------------- 149
D W M+S SLA+ EK
Sbjct: 189 DDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMP 248
Query: 150 ---------------------EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
EA+ +F +M E+G+ +E+T V++ACA ++E+G E
Sbjct: 249 VKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKE 308
Query: 189 L---------------------FHSMLGKFEVVPIMEH---------YGCVVDLLGRAGL 218
+ +S G E ++ + +++ L G
Sbjct: 309 VHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGF 368
Query: 219 LSEAKEFMRSMPFE---PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275
EA + M E P+A ++ AC G VD + R +++ Y ++
Sbjct: 369 AQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMID-------DYSIV 421
Query: 276 SNI-HAG 281
SN+ H G
Sbjct: 422 SNVEHYG 428
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 191/311 (61%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++DGY+K GDM+ A +F ++ RDVV+WT++I G+ ++G +GEAI +F++M+G R
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ--R 410
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T ++LS + L + GKQ+HG +++ + SV + ALI +Y K G + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSH---GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R F + +D +W +MI +LA + +EAL +F+ M +GLR + IT+V V +AC
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G + F M +++P + HY C+VDL GRAGLL EA+EF+ MP EPD G
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LL AC++H +DL RLL L+P++ G Y L+N+++ +W A +RK+M +
Sbjct: 588 SLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647
Query: 300 IRKIPAYSLIE 310
++K +S IE
Sbjct: 648 VKKEQGFSWIE 658
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 41/318 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI +++ G MD A+ FE M +RD+V+W S+I+GF + G A+ +F M+ + +L+
Sbjct: 218 MIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRD-SLLS 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-----NEIVLSVFMG----------- 104
P+ T SVLS+CA L L +GKQ+H +I+ + IVL+ +
Sbjct: 277 PDRFTLASVLSACANLEK---LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 105 -----------------TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
TAL+D Y K+G + +A +F S+ +DV W AMI +
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207
EA+ +F M G R N T A+L+ + + G ++ S + E+ +
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV-SVSN 452
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL--ELQ 265
++ + +AG ++ A + E D +++ A HG + E+ +L L+
Sbjct: 453 ALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR 512
Query: 266 PKHCGRYVVLSN-IHAGL 282
P H V S HAGL
Sbjct: 513 PDHITYVGVFSACTHAGL 530
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 16/266 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K GDMDS F+ + +RD VSWT++I G+ G + +AI V +M+ +
Sbjct: 86 VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG--IE 143
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + T +VL+S A + GK+VH +I++ + +V + +L+++Y K G A
Sbjct: 144 PTQFTLTNVLASVAA---TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF MV++D+ +WNAMI+ + A+ F++M E+ + +T+ ++++ +
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQR 256
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASV 237
L++F ML + P V+ L K+ + + F+ V
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLE 263
L AL+ G V E RRL+E
Sbjct: 317 LNALISMYSRCGGV----ETARRLIE 338
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEG-----GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
P + ++L C L+ + G + + VH ++++ ++ SV++ L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
A ++F M ++ +WN ++S+ + FD++ ++
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQR 109
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 85 GKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLA 143
G +H L +E+ L + F ++ Y K G ++ F + +D +W MI
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122
Query: 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
+ + +A+ + +M ++G+ + T VL + A + +E G ++ HS + K
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKV-HSFIVKL 175
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 234 bits (597), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G M A L+F M +D++SW +II G+ +N EA+ +F N++
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFS 496
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VL +CA L G+++HGYI+RN + +L+D+Y K G L A
Sbjct: 497 PDERTVACVLPACASL---SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F + KD+ +W MI+ + KEA+ +F++M++ G+ A+EI+FV++L AC+ +
Sbjct: 554 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 613
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G F+ M + ++ P +EHY C+VD+L R G L +A F+ +MP PDA++ GA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 673
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C+IH V L +V ++ EL+P++ G YV+++NI+A E+W + LRK + + G+
Sbjct: 674 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733
Query: 301 RKIPAYSLIE 310
RK P S IE
Sbjct: 734 RKNPGCSWIE 743
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K GD+DSA +F M R VVS+TS+I G+ R G GEA+ +F+ M +
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM--EEEGIS 394
Query: 61 PNEATYVSVLSSCAG--LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P+ T +VL+ CA L++EG K+VH +I N++ +F+ AL+D+Y K G ++
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEG-----KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFD-EMKEKGLRANEITFVAVLTAC 177
A VF M +KD+ +WN +I + N EAL +F+ ++EK +E T VL AC
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 178 ARAQLVELGLEL 189
A + G E+
Sbjct: 510 ASLSAFDKGREI 521
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 6/226 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ A +F+ + + W ++N ++G F +I +FK MM + V +
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG--VEMDSY 196
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ V S + L + G G+Q+HG+IL++ +G +L+ Y K ++ A +VF
Sbjct: 197 TFSCVSKSFSSLRSVHG---GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVF 253
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M +DV +WN++I+ SN ++ L +F +M G+ + T V+V CA ++L+
Sbjct: 254 DEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLIS 313
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG + HS+ K ++D+ + G L AK R M
Sbjct: 314 LGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T SVL CA + L GK+V +I N V+ +G+ L +Y G L+ A RVF
Sbjct: 96 TLCSVLQLCA---DSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ I+ WN +++ LA + ++ +F +M G+ + TF V + + + V
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 185 LGLEL 189
G +L
Sbjct: 213 GGEQL 217
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 234 bits (596), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G +DSA +F + DV+SW +II+G+ +NG EAI ++ N+M + N+
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY-NIMEEEGEIAANQG 452
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+VSVL +C+ G L G ++HG +L+N + L VF+ T+L D+YGK G LE A+ +F
Sbjct: 453 TWVSVLPACS---QAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + WN +I+ + ++A+++F EM ++G++ + ITFV +L+AC+ + LV+
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G F M + + P ++HYGC+VD+ GRAG L A +F++SM +PDAS+ GALL A
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C++HG VDL L E++P+H G +V+LSN++A +W ++R G+RK P
Sbjct: 630 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTP 689
Query: 305 AYSLIE 310
+S +E
Sbjct: 690 GWSSME 695
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 12/287 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y + G + +F+ M RD++SW SII + N AI +F+ M ++ ++
Sbjct: 288 LIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQ 345
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLER 119
P+ T +S+ S + L G + + V G+ LR L + +G A++ +Y K+G ++
Sbjct: 346 PDCLTLISLASILSQL---GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACA 178
A VF + DV +WN +IS A N EA+ M++ M+E+G + AN+ T+V+VL AC+
Sbjct: 403 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 462
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
+A + G++L H L K + + + D+ G+ G L +A +P ++
Sbjct: 463 QAGALRQGMKL-HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPW 520
Query: 239 GALLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSNI-HAGL 282
L+ HG + + + +L+ ++P H +LS H+GL
Sbjct: 521 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 567
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 22/287 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y G++ A F+++ RDV +W +I+G+ R G E I F M + L
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT- 150
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ SVL +C +++ G ++H L+ + V++ +LI LY + + A
Sbjct: 151 PDYRTFPSVLKACRTVID------GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACAR 179
+F M ++D+ +WNAMIS + KEAL + GLRA + +T V++L+AC
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTE 259
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A G+ + HS K + + ++DL G L + ++ M + D
Sbjct: 260 AGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWN 317
Query: 240 ALLGACKIHG----AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282
+++ A +++ A+ L E+ RL +QP C + L++I + L
Sbjct: 318 SIIKAYELNEQPLRAISLFQEM--RLSRIQPD-CLTLISLASILSQL 361
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L K +H ++ ++ + +V + L++LY +G + A F + +DV WN MIS
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 142 LASNSREKEALVMFD-EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200
E + F M GL + TF +VL AC + V G ++ H + KF +
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKI-HCLALKFGFM 182
Query: 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246
+ ++ L R + A+ MP S + G C+
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQ 228
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G +D A +F M R+VVSW+++I + +NG EA+ F+ MM
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L L GK +HGYILR + + + +AL+ +YG+ G LE
Sbjct: 283 PNSVTMVSVLQACASL---AALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVG 339
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +DV +WN++ISS + K+A+ +F+EM G +TFV+VL AC+
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHE 399
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF +M + P +EHY C+VDLLGRA L EA + ++ M EP V G+
Sbjct: 400 GLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGS 459
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLG+C+IHG V+L RRL L+PK+ G YV+L++I+A + W+ ++K + G+
Sbjct: 460 LLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGL 519
Query: 301 RKIPAYSLIE 310
+K+P +E
Sbjct: 520 QKLPGRCWME 529
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 7/252 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y G +D A +F+ KR + W ++ G E + ++ M N V
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM--NRIGVE 175
Query: 61 PNEATYVSVLSSC-AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+ TY VL +C A L GK++H ++ R V++ T L+D+Y + GC++
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDY 235
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM--KEKGLRANEITFVAVLTAC 177
A VF M +++V +W+AMI+ A N + EAL F EM + K N +T V+VL AC
Sbjct: 236 ASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQAC 295
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
A +E G +L H + + + I+ +V + GR G L + M + D
Sbjct: 296 ASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM-HDRDVVS 353
Query: 238 LGALLGACKIHG 249
+L+ + +HG
Sbjct: 354 WNSLISSYGVHG 365
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86
+S +I + G +AI V P++ TY +L C G + L
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESS------PSQQTY-ELLILCCG--HRSSLSDAL 97
Query: 87 QVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS 146
+VH +IL N F+ T LI +Y +G ++ A +VF + + WNA+ +L
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206
+E L ++ +M G+ ++ T+ VL AC ++ + H M GK E+ +
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT-----VNHLMKGK-EIHAHLTRR 211
Query: 207 G---------CVVDLLGRAGLLSEAKEFMRSMP 230
G +VD+ R G + A MP
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ G+V+ GDM++A +F+ M KRD+VSW S++ G+ + GC + M V V+
Sbjct: 306 MVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVK 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VS++S G N G L G+ VHG ++R ++ F+ +ALID+Y K G +ERA
Sbjct: 366 PDRVTMVSLIS---GAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VFK+ KDV W +MI+ LA + ++AL +F M+E+G+ N +T +AVLTAC+ +
Sbjct: 423 FMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM-RSMPFEPDASVLG 239
LVE GL +F+ M KF P EHYG +VDLL RAG + EAK+ + + MP P S+ G
Sbjct: 483 GLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWG 542
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++L AC+ ++ LL+L+P+ G YV+LSNI+A + RW + R+AM G
Sbjct: 543 SILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRG 602
Query: 300 IRKIPAYSLI 309
++K YS +
Sbjct: 603 VKKTAGYSSV 612
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 8/192 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y++ G+ A +F M DV S+ +I G+ + G EA+ ++ M+ + +
Sbjct: 172 LVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDG--IE 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMGTALIDLYGKVGCLE 118
P+E T +S+L C L + + LGK VHG+I R V S + + AL+D+Y K
Sbjct: 230 PDEYTVLSLLVCCGHLSD---IRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESG 286
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTAC 177
A R F +M KD+ +WN M+ + A +FD+M ++ L + N + F C
Sbjct: 287 LAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGC 346
Query: 178 ARAQLVELGLEL 189
+ + EL E+
Sbjct: 347 DQRTVRELFYEM 358
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 10 DMDSAILLFENMLKR-DVVSWTSIINGFV--RNGCFGEAICVFKNMMGNVNLVRPNEATY 66
++D A LLF N +V + ++I+ +N CFG ++ +M+ + V P+ T+
Sbjct: 83 NLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNECFG----LYSSMIRH--RVSPDRQTF 136
Query: 67 VSVLSSCAGLVNEGGLYLGKQVHGYILRNE-IVLSVFMGTALIDLYGKVGCLERAIRVFK 125
+ ++ + + L KQ+H +I+ + + L ++ +L+ Y ++G A +VF
Sbjct: 137 LYLMKASSFLSEV------KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFA 190
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M DV ++N MI A EAL ++ +M G+ +E T +++L C + L
Sbjct: 191 RMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRL 250
Query: 186 G 186
G
Sbjct: 251 G 251
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENM-LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV 59
MI GY+K ++ A +F++M + +++V+W ++I+G+V N + + +F+ M+ +
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG--I 280
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPN + S L C+ L L LG+Q+H + ++ + V T+LI +Y K G L
Sbjct: 281 RPNSSGLSSALLGCSEL---SALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F+ M KDV WNAMIS A + +AL +F EM + +R + ITFVAVL AC
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV +G+ F SM+ ++V P +HY C+VDLLGRAG L EA + +RSMPF P A+V G
Sbjct: 398 AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V+L +LL+L ++ YV L+NI+A RW +RK M E+
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESN 517
Query: 300 IRKIPAYSLIE 310
+ K+P YS IE
Sbjct: 518 VVKVPGYSWIE 528
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ YV+N + + A F+ M +D SW ++I G+ R G +A +F +MM
Sbjct: 130 MLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM------E 183
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE ++ +++S G + G L + + + V V TA+I Y K +E A
Sbjct: 184 KNEVSWNAMIS---GYIECGDL----EKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
+FK M + K++ TWNAMIS NSR ++ L +F M E+G+R N + L C+
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LG ++ H ++ K + + ++ + + G L +A + M + D
Sbjct: 297 LSALQLGRQI-HQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWN 354
Query: 240 ALLGACKIHGAVD 252
A++ HG D
Sbjct: 355 AMISGYAQHGNAD 367
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 91 YILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN-SREK 149
Y+ + +F +I + G ++ A+RVF M K+ TWN+++ ++ + SR
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110
Query: 150 EALVMFDEMKEKGLRANEI---------------------------TFVAVLTACARAQL 182
EA +FDE+ E + I ++ ++T AR
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE---PDASVLG 239
+E ELF+SM+ K EV + ++ G L +A F + P +++
Sbjct: 171 MEKARELFYSMMEKNEV-----SWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMIT 225
Query: 240 ALLGACKIHGAVDLCHE--VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+ A K+ A + + V + L+ G YV S GL+ L +AM+E
Sbjct: 226 GYMKAKKVELAEAMFKDMTVNKNLVTWNAMISG-YVENSRPEDGLK-------LFRAMLE 277
Query: 298 AGIR 301
GIR
Sbjct: 278 EGIR 281
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 187/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ Y + D+DSA +F+ +++ VV + ++I G+ R EA+ +F+ M G ++
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGK--YLK 227
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +SVLSSCA L G L LGK +H Y ++ V + TALID++ K G L+ A
Sbjct: 228 PNEITLLSVLSSCALL---GSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F+ M KD W+AMI + A++ + +++++MF+ M+ + ++ +EITF+ +L AC+
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
VE G + F M+ KF +VP ++HYG +VDLL RAG L +A EF+ +P P +
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRI 404
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC H +DL +V R+ EL H G YV+LSN++A ++W LRK M +
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464
Query: 301 RKIPAYSLIE 310
K+P S IE
Sbjct: 465 VKVPGCSSIE 474
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 7/244 (2%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
M A LFE M + D+V + S+ G+ R E +F ++ + L P+ T+ S
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGIL--PDNYTFPS 134
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128
+L +CA L G+Q+H ++ + +V++ LI++Y + ++ A VF +V
Sbjct: 135 LLKACAV---AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV 191
Query: 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188
V +NAMI+ A +R EAL +F EM+ K L+ NEIT ++VL++CA ++LG +
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-K 250
Query: 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248
H K ++ ++D+ + G L +A M ++ D A++ A H
Sbjct: 251 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANH 309
Query: 249 GAVD 252
G +
Sbjct: 310 GKAE 313
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 17/319 (5%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG-----EAICVFKNMMGNVNLV 59
Y KNGD+ A +F+ M +R V+W ++I G+ + G +A+ +F+ + V
Sbjct: 157 YAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGV 216
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV--LSVFMGTALIDLYGKVGCL 117
RP + T V VLS+ + G L +G VHGYI + + VF+GTAL+D+Y K GCL
Sbjct: 217 RPTDTTMVCVLSAIS---QTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCL 273
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
A VF+ M +K+V TW +M + LA N R E + + M E G++ NEITF ++L+A
Sbjct: 274 NNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAY 333
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
LVE G+ELF SM +F V P++EHYGC+VDLLG+AG + EA +F+ +MP +PDA +
Sbjct: 334 RHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAIL 393
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPK-------HCGRYVVLSNIHAGLERWNRATD 290
L +L AC I+G + E+G+ LLE++ + C YV LSN+ A +W
Sbjct: 394 LRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEK 453
Query: 291 LRKAMVEAGIRKIPAYSLI 309
LRK M E I+ P YS +
Sbjct: 454 LRKEMKERRIKTRPGYSFV 472
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 44 EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-NEIVLSVF 102
++I +F N +L+ NE T+V VL +CA + L +G+ VHG + + + S
Sbjct: 89 DSIRIFANYASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYESEL 148
Query: 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS-----NSREKEALVMFDE 157
+GT L+ Y K G L A +VF M + TWNAMI S N ++A+V+F
Sbjct: 149 IGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRR 208
Query: 158 MK--EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLL 213
G+R + T V VL+A ++ L+E+G L H + K P ++ + +VD+
Sbjct: 209 FSCCGSGVRPTDTTMVCVLSAISQTGLLEIG-SLVHGYIEKLGFTPEVDVFIGTALVDMY 267
Query: 214 GRAGLLSEA 222
+ G L+ A
Sbjct: 268 SKCGCLNNA 276
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +++A +FE M ++V +WTS+ G NG E + M + ++
Sbjct: 263 LVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESG--IK 320
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PNE T+ S+LS+ GLV E G+ L K + R + + ++DL GK G ++
Sbjct: 321 PNEITFTSLLSAYRHIGLVEE-GIELFKSMK---TRFGVTPVIEHYGCIVDLLGKAGRIQ 376
Query: 119 RAIRVFKSMVIK 130
A + +M IK
Sbjct: 377 EAYQFILAMPIK 388
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 194/312 (62%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G + A +FE + +RDVVS T+II G+ + G EA+ +F + + +
Sbjct: 194 LLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL--HSEGMS 251
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY S+L++ +GL L GKQ H ++LR E+ + +LID+Y K G L A
Sbjct: 252 PNYVTYASLLTALSGLAL---LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYA 308
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK-EKGLRANEITFVAVLTACAR 179
R+F +M + +WNAM+ + + +E L +F M+ EK ++ + +T +AVL+ C+
Sbjct: 309 RRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH 368
Query: 180 AQLVELGLELFHSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
++ + GL +F M+ G++ P EHYGC+VD+LGRAG + EA EF++ MP +P A VL
Sbjct: 369 GRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 428
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
G+LLGAC++H +VD+ VGRRL+E++P++ G YV+LSN++A RW ++R M++
Sbjct: 429 GSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQK 488
Query: 299 GIRKIPAYSLIE 310
+ K P S I+
Sbjct: 489 AVTKEPGRSWIQ 500
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 144/261 (55%), Gaps = 16/261 (6%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++ A + + M +++VVSWT++I+ + + G EA+ VF MM + +PNE
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG--KPNEF 154
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+ +VL+SC + GL LGKQ+HG I++ +F+G++L+D+Y K G ++ A +F
Sbjct: 155 TFATVLTSC---IRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
+ + +DV + A+I+ A ++EAL MF + +G+ N +T+ ++LTA + L++
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 185 LGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
G + H + + ++++ ++D+ + G LS A+ +MP S L+G
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329
Query: 244 ACKIHGAVDLCHEVGRRLLEL 264
K H +GR +LEL
Sbjct: 330 YSK--------HGLGREVLEL 342
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 4/165 (2%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y ++L++C +++ L G++VH ++++ + + ++ T L+ YGK CLE A +V
Sbjct: 55 YDALLNAC---LDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLD 111
Query: 126 SMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185
M K+V +W AMIS + EAL +F EM + NE TF VLT+C RA + L
Sbjct: 112 EMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGL 171
Query: 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
G ++ H ++ K+ + ++D+ +AG + EA+E +P
Sbjct: 172 GKQI-HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K GD+DSA +F M+K+D V+WT++I + +NG EA +F M V
Sbjct: 274 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM--EKTGVS 331
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T +VLS+C + G L LGKQ+ + + ++++ T L+D+YGK G +E A
Sbjct: 332 PDAGTLSTVLSACGSV---GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF++M +K+ TWNAMI++ A KEAL++FD M + ++ITF+ VL+AC A
Sbjct: 389 LRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHA 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV G FH M F +VP +EHY ++DLL RAG+L EA EFM P +PD +L A
Sbjct: 446 GLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAA 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLEL-QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LGAC V + + R L+E+ + K+ G YV+ SN+ A ++ W+ + +R M + G
Sbjct: 506 ILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRG 565
Query: 300 IRKIPAYSLIE 310
+ K P S IE
Sbjct: 566 VVKTPGCSWIE 576
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K G + A LF+ + +RD VSW S+I+G+ G +A+ +F+ M P+E
Sbjct: 177 YAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM--EEEGFEPDER 234
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+L +C+ L G L G+ + + +I LS F+G+ LI +YGK G L+ A RVF
Sbjct: 235 TLVSMLGACSHL---GDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVF 291
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ KD W AMI+ + N + EA +F EM++ G+ + T VL+AC +E
Sbjct: 292 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 351
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
LG ++ + + + + +VD+ G+ G + EA +MP + +A+
Sbjct: 352 LGKQI-ETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT 402
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEA-ICVFKNMMGNVNLV 59
+I V+ GD + + LF + + S+ +I G EA + +++ M + +
Sbjct: 71 LIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRM--KFSGL 128
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+P++ TY V +CA L G +G+ VH + + + V + +LI +Y K G +
Sbjct: 129 KPDKFTYNFVFIACAKLEEIG---VGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGY 185
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F + +D +WN+MIS + K+A+ +F +M+E+G +E T V++L AC+
Sbjct: 186 ARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSH 245
Query: 180 ------AQLVE-------LGLELFH-----SMLGK----------FEVVPIMEH--YGCV 209
+L+E +GL F SM GK F + + + +
Sbjct: 246 LGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAM 305
Query: 210 VDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266
+ + + G SEA + M PDA L +L AC GA++L ++ EL
Sbjct: 306 ITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSL 365
Query: 267 KH 268
+H
Sbjct: 366 QH 367
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G+ + G++ A +F+ M RD +W +I + R G EA+ +F M VR
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQG--VR 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + +S+LS CA L + L G+QVH +++R + V++ + L+ +Y K G L +A
Sbjct: 329 PSFPSLISILSVCATLAS---LQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKA 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF KD+ WN++IS AS+ +EAL +F EM G N++T +A+LTAC+ A
Sbjct: 386 KLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYA 445
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E GLE+F SM KF V P +EHY C VD+LGRAG + +A E + SM +PDA+V GA
Sbjct: 446 GKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGA 505
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACK H +DL ++L E +P + G YV+LS+I+A +W +RK M +
Sbjct: 506 LLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNV 565
Query: 301 RKIPAYSLIE 310
K P S IE
Sbjct: 566 SKFPGCSWIE 575
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 31/311 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY NG A LF+ M +R+VVSW +++G+++N EA VF+ M
Sbjct: 54 IVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELM-------- 105
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLSVFMGTALIDLYGKVGCLER 119
E VS + G + EG + + + + RNE+ +V G + D G +++
Sbjct: 106 -PERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD-----GRIDK 159
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A +++ M +KDV MI L R EA ++FDEM+E+ N +T+ ++T +
Sbjct: 160 ARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRER----NVVTWTTMITGYRQ 215
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V++ +LF M K EV G + +G + +A+EF MP +P +
Sbjct: 216 NNRVDVARKLFEVMPEKTEVSWTSMLLGYTL-----SGRIEDAEEFFEVMPMKPVIACNA 270
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++G ++ G + V L+E + R ++ + G E A DL M + G
Sbjct: 271 MIVGFGEV-GEISKARRVF-DLMEDRDNATWRGMIKAYERKGFEL--EALDLFAQMQKQG 326
Query: 300 IRKIPAY-SLI 309
+R P++ SLI
Sbjct: 327 VR--PSFPSLI 335
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G +D A L+F+ M +R+VV+WT++I G+ +N A +F+ M
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM-------- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T VS S G G + ++ + ++ A+I +G+VG + +A
Sbjct: 230 -PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC----NAMIVGFGEVGEISKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
RVF M +D TW MI + E EAL +F +M+++G+R + + +++L+ CA
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 181 QLVELGLEL 189
++ G ++
Sbjct: 345 ASLQYGRQV 353
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 92 ILRNEIVLSVFMGTAL-IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150
ILR + S + + I ++G + A + F S+ K + +WN+++S SN KE
Sbjct: 7 ILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKE 66
Query: 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210
A +FDEM E+ N +++ +++ + +++ +F M + V + +V
Sbjct: 67 ARQLFDEMSER----NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV-----SWTAMV 117
Query: 211 DLLGRAGLLSEAKEFMRSMPFEPDAS---VLGALLGACKIHGAVDLCHEVGRRLLELQPK 267
+ G++ EA+ MP + S + G L+ +I A R+L ++ P
Sbjct: 118 KGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA--------RKLYDMMP- 168
Query: 268 HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309
V +N+ GL R R + R E R + ++ +
Sbjct: 169 -VKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTM 209
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 190/312 (60%), Gaps = 7/312 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL 58
M+ GY K GDM+ A ++F+ M ++VV+WT II G+ G EA + M+ +
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-- 310
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
++ + A +S+L++C G L LG ++H + R+ + + ++ AL+D+Y K G L+
Sbjct: 311 LKFDAAAVISILAAC---TESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+A VF + KD+ +WN M+ L + KEA+ +F M+ +G+R +++TF+AVL +C
Sbjct: 368 KAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCN 427
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238
A L++ G++ F+SM +++VP +EHYGC+VDLLGR G L EA + +++MP EP+ +
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIW 487
Query: 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298
GALLGAC++H VD+ EV L++L P G Y +LSNI+A E W D+R M
Sbjct: 488 GALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSM 547
Query: 299 GIRKIPAYSLIE 310
G+ K S +E
Sbjct: 548 GVEKPSGASSVE 559
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
A+ +F + + +V S+I +N +A VF M L N TY +L +C
Sbjct: 70 AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQ-RFGLFADN-FTYPFLLKAC 127
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL--ERAIRVFKSMVIKD 131
+G + L + K +H +I + + +++ ALID Y + G L A+++F+ M +D
Sbjct: 128 SG---QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD 184
Query: 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191
+WN+M+ L ++A +FDEM ++ L I++ +L AR + + ELF
Sbjct: 185 TVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----ISWNTMLDGYARCREMSKAFELFE 240
Query: 192 SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
M + V + +V +AG + A+ MP
Sbjct: 241 KMPERNTV-----SWSTMVMGYSKAGDMEMARVMFDKMPL 275
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
KQ+H I+R + + + LI A+RVF + +V N++I + A N
Sbjct: 36 KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
S+ +A +F EM+ GL A+ T+ +L AC+ + + +++ H+ + K + +
Sbjct: 96 SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPV-VKMMHNHIEKLGLSSDIYV 154
Query: 206 YGCVVDLLGRAGLLS--EAKEFMRSMPFEPDA----SVLGALLGACKIHGAVDLCHEVGR 259
++D R G L +A + M E D S+LG L+ A ++ A L E+ +
Sbjct: 155 PNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 260 RLL 262
R L
Sbjct: 214 RDL 216
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 189/311 (60%), Gaps = 6/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G + G++ A +F++M +R+ SW ++I RNG EA+ +F ++ VR
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF--ILMQKQGVR 328
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P T +S+LS CA L L+ GKQVH ++R + + V++ + L+ +Y K G L ++
Sbjct: 329 PTFPTLISILSVCASL---ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKS 385
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACAR 179
+F KD+ WN++IS AS+ +EAL +F EM G + NE+TFVA L+AC+
Sbjct: 386 KLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSY 445
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A +VE GL+++ SM F V PI HY C+VD+LGRAG +EA E + SM EPDA+V G
Sbjct: 446 AGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWG 505
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
+LLGAC+ H +D+ ++L+E++P++ G Y++LSN++A RW +LRK M
Sbjct: 506 SLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRL 565
Query: 300 IRKIPAYSLIE 310
+RK P S E
Sbjct: 566 VRKSPGCSWTE 576
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY+KNG++D A +F+ M +R+VVSWT+++ G+V NG A +F M
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-------- 136
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E VS G + +G + +++ I + + T++I K G ++ A
Sbjct: 137 -PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIAR----TSMIHGLCKEGRVDEA 191
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V TW M++ N+R +A +FD M EK E+++ ++L +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQN 247
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGC--VVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
+E EL FEV+P+ C ++ LG+ G +++A+ SM DAS
Sbjct: 248 GRIEDAEEL-------FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDAS 298
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI G K G +D A +F+ M +R V++WT+++ G+ +N +A +F M
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM-------- 229
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
E T VS S G V G + +++ + V V A+I G+ G + +A
Sbjct: 230 -PEKTEVSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIACNAMISGLGQKGEIAKA 284
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
RVF SM ++ +W +I N E EAL +F M+++G+R T +++L+ CA
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCA 342
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 112 GKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-------- 163
++G + A ++F S K + +WN+M++ +N ++A +FDEM ++ +
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87
Query: 164 -------------------RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME 204
N +++ A++ V++ LF M K +V +
Sbjct: 88 GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147
Query: 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
G + D G + +A + +P + + + + G CK G VD E+ + E
Sbjct: 148 LIGFLQD-----GRIDDACKLYEMIPDKDNIARTSMIHGLCK-EGRVDEAREIFDEMSER 201
Query: 265 QPKHCGRYVVLSNIHAGLERWNRATDLRK 293
+ + + G + NR D RK
Sbjct: 202 S------VITWTTMVTGYGQNNRVDDARK 224
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 186/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID YVK +D+A LFE + R+VV WT++I+GF + EA +F+ M+ L
Sbjct: 252 IIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESIL-- 309
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN+ T ++L SC+ L G L GK VHGY++RN I + T+ ID+Y + G ++ A
Sbjct: 310 PNQCTLAAILVSCSSL---GSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMA 366
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++V +W++MI++ N +EAL F +MK + + N +TFV++L+AC+ +
Sbjct: 367 RTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHS 426
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+ G + F SM + VVP EHY C+VDLLGRAG + EAK F+ +MP +P AS GA
Sbjct: 427 GNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGA 486
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH VDL E+ +LL ++P+ YV+LSNI+A W +R+ M G
Sbjct: 487 LLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGY 546
Query: 301 RKIPAYSLIE 310
RK S E
Sbjct: 547 RKHVGQSATE 556
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 129/262 (49%), Gaps = 12/262 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y + G M+SA +F+ + R+ V W ++ G+++ E +F +M + L
Sbjct: 150 LVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLF-CLMRDTGLAL 208
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLER 119
+ T + ++ +C G V G + GK VHG +R + S ++ ++ID+Y K L+
Sbjct: 209 -DALTLICLVKAC-GNVFAGKV--GKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A ++F++ V ++V W +IS A R EA +F +M + + N+ T A+L +C+
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSS 324
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G + H + + + ++ +D+ R G + A+ MP E +
Sbjct: 325 LGSLRHGKSV-HGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMP-ERNVISWS 382
Query: 240 ALLGACKIHG----AVDLCHEV 257
+++ A I+G A+D H++
Sbjct: 383 SMINAFGINGLFEEALDCFHKM 404
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNG--CFGEAICVFKNMMGNV 56
+ + Y+++ +D A F + KR+ SW +I++G+ ++ C+ + + ++ M +
Sbjct: 45 LTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHC 104
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
+ V + V + +C GL G L G +HG ++N + ++ +L+++Y ++G
Sbjct: 105 DGV--DSFNLVFAIKACVGL---GLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGT 159
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
+E A +VF + +++ W ++ S++ E +F M++ GL + +T + ++ A
Sbjct: 160 MESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKA 219
Query: 177 C 177
C
Sbjct: 220 C 220
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 185/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GY + G M A LF ML + +VSWT++I+G+ GC+ EA+ F+ M + +
Sbjct: 181 LLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIE 238
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E + +SVL SCA L G L LGK +H Y R + + ALI++Y K G + +A
Sbjct: 239 PDEISLISVLPSCAQL---GSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA 295
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I++F M KDV +W+ MIS A + A+ F+EM+ ++ N ITF+ +L+AC+
Sbjct: 296 IQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHV 355
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+ + GL F M +++ P +EHYGC++D+L RAG L A E ++MP +PD+ + G+
Sbjct: 356 GMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGS 415
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C+ G +D+ L+EL+P+ G YV+L+NI+A L +W + LRK + +
Sbjct: 416 LLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENM 475
Query: 301 RKIPAYSLIE 310
+K P SLIE
Sbjct: 476 KKTPGGSLIE 485
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 43/295 (14%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D K DMD A LF + +V + SII + N + + I ++K ++ +
Sbjct: 48 MVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRK-SFEL 106
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ + SCA L G YLGKQVHG++ + V ALID+Y K L A
Sbjct: 107 PDRFTFPFMFKSCASL---GSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDA 163
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREK------------------------------- 149
+VF M +DV +WN+++S A + K
Sbjct: 164 HKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG--LELFHSMLGKFEVVPIMEHYG 207
EA+ F EM+ G+ +EI+ ++VL +CA+ +ELG + L+ G + +
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVC---N 280
Query: 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC---KIHGAVDLCHEVGR 259
++++ + G++S+A + M + S + G HGA++ +E+ R
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQR 335
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
K+++ I+ + + S FM T ++D K+ ++ A R+F + +V +N++I + N
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 146 SREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLELFHSMLGKF 197
S + + ++ ++ K + TF + +CA LG ++ H L KF
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV-HGHLCKF 138
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 169/281 (60%), Gaps = 5/281 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYV +G+++ A LFE M +++VVSWT++INGF + G + AI + M+ ++
Sbjct: 233 LIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKG--LK 290
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T +VLS+C+ G L G ++HGYIL N I L +GTAL+D+Y K G L+ A
Sbjct: 291 PNEYTIAAVLSACS---KSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCA 347
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF +M KD+ +W AMI A + R +A+ F +M G + +E+ F+AVLTAC +
Sbjct: 348 ATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNS 407
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
V+LGL F SM + + P ++HY VVDLLGRAG L+EA E + +MP PD + A
Sbjct: 408 SEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAA 467
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281
L ACK H V + LLEL P+ CG Y+ L HA
Sbjct: 468 LYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHAS 508
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 48/193 (24%)
Query: 1 MIDGYVKNGDMDSAILLFEN----MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56
++D Y K G + A +FE + K ++ W +ING+ R A +F++M
Sbjct: 167 LVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSM---- 222
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
P N G + LI Y G
Sbjct: 223 ----PER--------------NSGSW----------------------STLIKGYVDSGE 242
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L RA ++F+ M K+V +W +I+ + + A+ + EM EKGL+ NE T AVL+A
Sbjct: 243 LNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSA 302
Query: 177 CARAQLVELGLEL 189
C+++ + G+ +
Sbjct: 303 CSKSGALGSGIRI 315
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E+ ++S++ +C + + VH ILR VLS + L+ + + +
Sbjct: 27 PDESHFISLIHACKDTASL------RHVHAQILRRG-VLSSRVAAQLVSCSSLLKSPDYS 79
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ +F++ ++ NA+I L N+R + ++ F M G++ + +TF VL + ++
Sbjct: 80 LSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKL 139
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230
LG L + L F +VD+ + G L A + P
Sbjct: 140 GFRWLGRALHAATLKNFVDCDSFVRLS-LVDMYAKTGQLKHAFQVFEESP 188
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 191/311 (61%), Gaps = 5/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI Y K G++++A LF++M +RD+VSW +I+G+ ++G +A+ +F+ ++ +
Sbjct: 198 MITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE-GKPK 256
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T V+ LS+C+ + G L G+ +H ++ + I L+V + T LID+Y K G LE A
Sbjct: 257 PDEITVVAALSACSQI---GALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACAR 179
+ VF KD+ WNAMI+ A + ++AL +F+EM+ GL+ +ITF+ L ACA
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
A LV G+ +F SM ++ + P +EHYGC+V LLGRAG L A E +++M + D+ +
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWS 433
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
++LG+CK+HG L E+ L+ L K+ G YV+LSNI+A + + +R M E G
Sbjct: 434 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 493
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 494 IVKEPGISTIE 504
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 43/278 (15%)
Query: 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63
Y +G + ++ LF + D+ +T+ IN NG +A ++ ++ + + PNE
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE--INPNE 130
Query: 64 ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---------- 113
T+ S+L SC+ GK +H ++L+ + + ++ T L+D+Y K
Sbjct: 131 FTFSSLLKSCS-------TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKV 183
Query: 114 ---------------------VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152
G +E A +F SM +D+ +WN MI A + +AL
Sbjct: 184 FDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDAL 243
Query: 153 VMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211
++F ++ +G + +EIT VA L+AC++ +E G H + + ++ ++D
Sbjct: 244 MLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLID 302
Query: 212 LLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+ + G L EA P D A++ +HG
Sbjct: 303 MYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 5/306 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K +++SA LF+ ++ + SW ++I+G+ +NG +AI +F+ M + PN
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE--FSPNPV 421
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T +LS+CA L G L LGK VH + + S+++ TALI +Y K G + A R+F
Sbjct: 422 TITCILSACAQL---GALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K+ TWN MIS + + +EAL +F EM G+ +TF+ VL AC+ A LV+
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
G E+F+SM+ ++ P ++HY C+VD+LGRAG L A +F+ +M EP +SV LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598
Query: 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304
C+IH +L V +L EL P + G +V+LSNIH+ + +A +R+ + + K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 305 AYSLIE 310
Y+LIE
Sbjct: 659 GYTLIE 664
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
I Y K G + LF K D+V++ ++I+G+ NG ++ +FK +M ++ R
Sbjct: 262 FISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM--LSGAR 319
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+T VS++ G L L +HGY L++ + + TAL +Y K+ +E A
Sbjct: 320 LRSSTLVSLVPV------SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F K + +WNAMIS N ++A+ +F EM++ N +T +L+ACA+
Sbjct: 374 RKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQL 433
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ LG + H ++ + + ++ + + G ++EA+ M
Sbjct: 434 GALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 34/283 (12%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y K ++ A +F+ M ++D + W ++I+G+ +N + E+I VF++++ N + R
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI-NESCTR 218
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ T + +L + A L L LG Q+H + ++ T I LY K G ++
Sbjct: 219 LDTTTLLDILPAVAELQE---LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA---- 176
+F+ D+ +NAMI SN + +L +F E+ G R T V+++
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 177 ---------CARAQL-----VELGLELFHSMLGK-------FEVVP--IMEHYGCVVDLL 213
C ++ V L +S L + F+ P + + ++
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 214 GRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDL 253
+ GL +A R M F P+ + +L AC GA+ L
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F ++ + DV + ++ GF N ++ VF ++ + +L +PN +TY +S+ +G
Sbjct: 74 IFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL-KPNSSTYAFAISAASGF 132
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
++ G+ +HG + + + +G+ ++ +Y K +E A +VF M KD WN
Sbjct: 133 RDDRA---GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWN 189
Query: 137 AMISSLASNSREKEALVMF-DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
MIS N E++ +F D + E R + T + +L A A Q + LG+++ HS+
Sbjct: 190 TMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-HSLAT 248
Query: 196 K 196
K
Sbjct: 249 K 249
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K G + A LF+ M K++ V+W ++I+G+ +G EA+ +F M+ + +
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG--IT 518
Query: 61 PNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P T++ VL +C AGLV EG +H Y SV ++D+ G+ G L+
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEP----SVKHYACMVDILGRAGHLQ 574
Query: 119 RAIRVFKSMVIKD-VCTWNAMI 139
RA++ ++M I+ W ++
Sbjct: 575 RALQFIEAMSIEPGSSVWETLL 596
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G +D + LF++M ++DVV W ++I G V+ +A+ +F+ M + +
Sbjct: 329 MISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEM--QTSNTK 386
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T + LS+C+ L G L +G +H YI + + L+V +GT+L+D+Y K G + A
Sbjct: 387 PDEITMIHCLSACSQL---GALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEA 443
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + ++ T+ A+I LA + A+ F+EM + G+ +EITF+ +L+AC
Sbjct: 444 LSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHG 503
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ G + F M +F + P ++HY +VDLLGRAGLL EA M SMP E DA+V GA
Sbjct: 504 GMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGA 563
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL C++HG V+L + ++LLEL P G YV+L ++ W A R+ M E G+
Sbjct: 564 LLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGV 623
Query: 301 RKIPAYSLIE 310
KIP S IE
Sbjct: 624 EKIPGCSSIE 633
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 38/272 (13%)
Query: 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
GDM++A +F+ RD+VSW +ING+ + G +AI V+K M V+P++ T +
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEG--VKPDDVTMIG 262
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS-- 126
++SSC+ L G L GK+ + Y+ N + +++ + AL+D++ K G + A R+F +
Sbjct: 263 LVSSCSML---GDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLE 319
Query: 127 -----------------------------MVIKDVCTWNAMISSLASNSREKEALVMFDE 157
M KDV WNAMI R ++AL +F E
Sbjct: 320 KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQE 379
Query: 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217
M+ + +EIT + L+AC++ +++G+ H + K+ + + +VD+ + G
Sbjct: 380 MQTSNTKPDEITMIHCLSACSQLGALDVGI-WIHRYIEKYSLSLNVALGTSLVDMYAKCG 438
Query: 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+SEA + ++ A++G +HG
Sbjct: 439 NISEALSVFHGIQTR-NSLTYTAIIGGLALHG 469
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 109/222 (49%), Gaps = 9/222 (4%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN-VNLVRPNEATYVSV 69
+D ++ + + + ++ SW I GF + E+ ++K M+ + RP+ TY +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI 129
CA L LG + G++L+ + L + A I ++ G +E A +VF +
Sbjct: 163 FKVCADLRLSS---LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPV 219
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189
+D+ +WN +I+ ++A+ ++ M+ +G++ +++T + ++++C+ + G E
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEF 279
Query: 190 FHSML--GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ + G +P++ ++D+ + G + EA+ ++
Sbjct: 280 YEYVKENGLRMTIPLV---NALMDMFSKCGDIHEARRIFDNL 318
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 188/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y K ++D+A +F + R +VSW ++I GF +NG +A+ F M V+
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT--VK 435
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ TYVSV+++ A L + K +HG ++R+ + +VF+ TAL+D+Y K G + A
Sbjct: 436 PDTFTYVSVITAIAEL---SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F M + V TWNAMI ++ K AL +F+EM++ ++ N +TF++V++AC+ +
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GL+ F+ M + + M+HYG +VDLLGRAG L+EA +F+ MP +P +V GA
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LGAC+IH V+ + RL EL P G +V+L+NI+ W + +R +M+ G+
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 301 RKIPAYSLIE 310
RK P S++E
Sbjct: 673 RKTPGCSMVE 682
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y K ++ A +F+ M +RD+VSW +I+ G+ +NG A+ + K+M NL +P+
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE-NL-KPSFI 237
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VSVL + + L + +GK++HGY +R+ V + TAL+D+Y K G LE A ++F
Sbjct: 238 TIVSVLPAVSAL---RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLF 294
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M+ ++V +WN+MI + N KEA+++F +M ++G++ +++ + L ACA +E
Sbjct: 295 DGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLE 354
Query: 185 LG 186
G
Sbjct: 355 RG 356
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +++A LF+ ML+R+VVSW S+I+ +V+N EA+ +F+ M+ V+
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG--VK 334
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + + + L +CA L G L G+ +H + + +V + +LI +Y K ++ A
Sbjct: 335 PTDVSVMGALHACADL---GDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
+F + + + +WNAMI A N R +AL F +M+ + ++ + T+V+V+TA A
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ + + G +D A +FE + + V + +++ GF + +A+ F M + V
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM--RYDDVE 132
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + +L C +E L +GK++HG ++++ L +F T L ++Y K + A
Sbjct: 133 PVVYNFTYLLKVCG---DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEA 189
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D+ +WN +++ + N + AL M M E+ L+ + IT V+VL A +
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249
Query: 181 QLVELGLELF-HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+L+ +G E+ ++M F+ ++ +VD+ + G L A++ M
Sbjct: 250 RLISVGKEIHGYAMRSGFD--SLVNISTALVDMYAKCGSLETARQLFDGM 297
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 6/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y + G MD A L+F+ + R+ VSW ++I G R +A+ +F+ M+ + R
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG--FR 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ +Y S+ +C+ + G L GK VH Y++++ L F G L+D+Y K G + A
Sbjct: 260 PSHFSYASLFGACS---STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDA 316
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F + +DV +WN+++++ A + KEA+ F+EM+ G+R NEI+F++VLTAC+ +
Sbjct: 317 RKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHS 376
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L++ G ++ ++ K +VP HY VVDLLGRAG L+ A F+ MP EP A++ A
Sbjct: 377 GLLDEGWH-YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC++H +L + EL P G +V+L NI+A RWN A +RK M E+G+
Sbjct: 436 LLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495
Query: 301 RKIPAYSLIE 310
+K PA S +E
Sbjct: 496 KKEPACSWVE 505
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 7/249 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y K G ++ A +FE M +RD V+WT++I+G+ ++ +A+ F M+
Sbjct: 101 LLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFG--YS 158
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SV+ + A E G Q+HG+ ++ +V +G+AL+DLY + G ++ A
Sbjct: 159 PNEFTLSSVIKAAAA---ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF ++ ++ +WNA+I+ A S ++AL +F M G R + ++ ++ AC+
Sbjct: 216 QLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST 275
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+E G + M+ E + + ++D+ ++G + +A++ + + D +
Sbjct: 276 GFLEQGKWVHAYMIKSGEKL-VAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNS 333
Query: 241 LLGACKIHG 249
LL A HG
Sbjct: 334 LLTAYAQHG 342
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISS 141
L G+ VH +IL++ + MG L+++Y K G LE A +VF+ M +D TW +IS
Sbjct: 76 LIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+ + R +AL+ F++M G NE T +V+ A A + G +L H K
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL-HGFCVKCGFDS 194
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGA 250
+ ++DL R GL+ +A+ ++ D S + G + G
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 184/310 (59%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+ ++ + +F + RD +SW S++ G+V+NG + EA+ +F+ M+ V+
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV--TAKVK 340
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P + SV+ +CA L L+LGKQ+HGY+LR ++F+ +AL+D+Y K G ++ A
Sbjct: 341 PGAVAFSSVIPACAHLAT---LHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA 397
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
++F M + D +W A+I A + EA+ +F+EMK +G++ N++ FVAVLTAC+
Sbjct: 398 RKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHV 457
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ F+SM + + +EHY V DLLGRAG L EA F+ M EP SV
Sbjct: 458 GLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWST 517
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL +C +H ++L +V ++ + ++ G YV++ N++A RW LR M + G+
Sbjct: 518 LLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577
Query: 301 RKIPAYSLIE 310
RK PA S IE
Sbjct: 578 RKKPACSWIE 587
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 150/290 (51%), Gaps = 16/290 (5%)
Query: 11 MDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70
+DS +FE M ++DVVS+ +II G+ ++G + +A+ + + M G +L +P+ T SVL
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDL-KPDSFTLSSVL 249
Query: 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK 130
+ V+ + GK++HGY++R I V++G++L+D+Y K +E + RVF + +
Sbjct: 250 PIFSEYVD---VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190
D +WN++++ N R EAL +F +M ++ + F +V+ ACA + LG +L
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366
Query: 191 HSML-GKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG-ACKIH 248
+L G F + +VD+ + G + A++ M + S ++G A H
Sbjct: 367 GYVLRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 424
Query: 249 G--AVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGL--ERWNRATDLRK 293
G AV L E+ R+ ++P VL+ H GL E W + K
Sbjct: 425 GHEAVSLFEEMKRQ--GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 472
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 18 FENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77
F+ + V++W S+I F F +A+ F M + P+ + SVL SC ++
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC--PDHNVFPSVLKSCTMMM 119
Query: 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV----------------------- 114
+ L G+ VHG+I+R + ++ G AL+++Y K+
Sbjct: 120 D---LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNS 176
Query: 115 --------GC-----LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161
C ++ RVF+ M KDV ++N +I+ A + ++AL M EM
Sbjct: 177 GDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTT 236
Query: 162 GLRANEITFVAVL 174
L+ + T +VL
Sbjct: 237 DLKPDSFTLSSVL 249
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
KQ+H +R + LS + +I +Y + L A+ +FK++ V W ++I
Sbjct: 24 AKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTD 82
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
S +AL F EM+ G + F +VL +C
Sbjct: 83 QSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID + K G+ + A+ +F+ M+ D + W SII GF +N A+ +FK M +
Sbjct: 200 LIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAE 259
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+AT SVL +C GL L LG Q H +I++ + + + AL+D+Y K G LE A
Sbjct: 260 --QATLTSVLRACTGL---ALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDA 312
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+RVF M +DV TW+ MIS LA N +EAL +F+ MK G + N IT V VL AC+ A
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L+E G F SM + + P+ EHYGC++DLLG+AG L +A + + M EPDA
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ + L ++++ L P+ G Y +LSNI+A ++W+ ++R M + GI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 301 RKIPAYSLIE 310
+K P S IE
Sbjct: 493 KKEPGCSWIE 502
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I+ YVK ++ A LF+ M +R+V+SWT++I+ + + +A+ + M+ + VR
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN--VR 159
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN TY SVL SC G+ + L+ G I++ + VF+ +ALID++ K+G E A
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCG------IIKEGLESDVFVRSALIDVFAKLGEPEDA 213
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF MV D WN++I A NSR AL +F MK G A + T +VL AC
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
L+ELG++ H + K++ I+ + +VD+ + G L +A M
Sbjct: 274 ALLELGMQA-HVHIVKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQM 319
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 62 NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121
+ ATY ++ C ++ ++ G + ++ N +F+ LI++Y K L A
Sbjct: 60 DSATYSELIKCC---ISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAH 116
Query: 122 RVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
++F M ++V +W MIS+ + ++AL + M +R N T+ +VL +C
Sbjct: 117 QLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC 172
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 175/294 (59%), Gaps = 5/294 (1%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F M K+ +VSW +I +++N EA+ ++ M + P+ + SVL +C
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRM--EADGFEPDAVSITSVLPACG-- 320
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
+ L LGK++HGYI R +++ ++ + ALID+Y K GCLE+A VF++M +DV +W
Sbjct: 321 -DTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196
AMIS+ + R +A+ +F ++++ GL + I FV L AC+ A L+E G F M
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHE 256
+++ P +EH C+VDLLGRAG + EA F++ M EP+ V GALLGAC++H D+
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+L +L P+ G YV+LSNI+A RW T++R M G++K P S +E
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 25/278 (8%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ Y D+ SA +F+ + +R+V+ +I +V NG +GE + VF M G N VR
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG-CN-VR 137
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T+ VL +C+ G + +G+++HG + + ++F+G L+ +YGK G L A
Sbjct: 138 PDHYTFPCVLKACSC---SGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
V M +DV +WN+++ A N R +AL + EM+ + + T ++L A +
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254
Query: 181 QL--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEPDA 235
V ++F M GK +V + ++ + + + EA E M FEPDA
Sbjct: 255 TTENVMYVKDMFFKM-GKKSLVS----WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 236 SVLGALLGAC----------KIHGAVDLCHEVGRRLLE 263
+ ++L AC KIHG ++ + LLE
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLE 347
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIIN--GFVRNGCFGEAICVFKNMMGNVNL 58
+ID Y K G ++ A +FENM RDVVSWT++I+ GF GC +A+ +F + + L
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGC--DAVALFSKLQ-DSGL 406
Query: 59 VRPNEATYVSVLSSC--AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
V P+ +V+ L++C AGL+ EG Y +I + ++DL G+ G
Sbjct: 407 V-PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY----KITPRLEHLACMVDLLGRAGK 461
Query: 117 LERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVMFDEM 158
++ A R + M ++ + W A++ + +S L+ D++
Sbjct: 462 VKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Query: 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN 145
+ VH I+ ++ + +G L+ Y + + A +VF + ++V N MI S +N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH 205
E + +F M +R + TF VL AC+ + + +G ++ H K + +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKI-HGSATKVGLSSTLFV 177
Query: 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC---KIHGAVDLCHEV 257
+V + G+ G LSEA+ + M S ++G + A+++C E+
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 189/310 (60%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +D A ++F+ K+D+V WT++I+ +V + EA+ VF+ M + ++
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC--CSGIK 341
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + SV+S+CA L G L K VH I N + + + ALI++Y K G L+
Sbjct: 342 PDVVSMFSVISACANL---GILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDAT 398
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF+ M ++V +W++MI++L+ + +AL +F MK++ + NE+TFV VL C+ +
Sbjct: 399 RDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHS 458
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G ++F SM ++ + P +EHYGC+VDL GRA LL EA E + SMP + + G+
Sbjct: 459 GLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGS 518
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L+ AC+IHG ++L +R+LEL+P H G V++SNI+A +RW ++R+ M E +
Sbjct: 519 LMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNV 578
Query: 301 RKIPAYSLIE 310
K S I+
Sbjct: 579 FKEKGLSRID 588
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 127/280 (45%), Gaps = 38/280 (13%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+D Y G ++ A +F+ M RDVV+W ++I + R G EA +F+ M + V
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSN--VM 209
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E +++S+C G + + ++ +++ N++ + + TAL+ +Y GC++ A
Sbjct: 210 PDEMILCNIVSACG---RTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMA 266
Query: 121 IRVFKSMVI-------------------------------KDVCTWNAMISSLASNSREK 149
F+ M + KD+ W MIS+ + +
Sbjct: 267 REFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209
EAL +F+EM G++ + ++ +V++ACA +++ + HS + + + +
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNAL 385
Query: 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG 249
+++ + G L ++ MP + +++ A +HG
Sbjct: 386 INMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHG 424
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
R ++ +++ +L + + + L+ G ++HG + + F+ T +D+Y G +
Sbjct: 108 RLDQFSFLPILKAVSKV---SALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINY 164
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A VF M +DV TWN MI EA +F+EMK+ + +E+ +++AC R
Sbjct: 165 ARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 224
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
+ ++ ++ +V +V + AG + A+EF R M
Sbjct: 225 TGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 178/298 (59%), Gaps = 11/298 (3%)
Query: 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76
+F+ M +R+VVSW SI+ V NG F M+G P+E T V +LS+C G
Sbjct: 170 VFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGK--RFCPDETTMVVLLSACGG- 226
Query: 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN 136
L LGK VH ++ E+ L+ +GTAL+D+Y K G LE A VF+ MV K+V TW+
Sbjct: 227 ----NLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWS 282
Query: 137 AMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195
AMI LA +EAL +F +M KE +R N +TF+ VL AC+ LV+ G + FH M
Sbjct: 283 AMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEK 342
Query: 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD--- 252
++ P+M HYG +VD+LGRAG L+EA +F++ MPFEPDA V LL AC IH D
Sbjct: 343 IHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEG 402
Query: 253 LCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIE 310
+ +V +RL+EL+PK G V+++N A W A ++R+ M E ++KI S +E
Sbjct: 403 IGEKVKKRLIELEPKRSGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLE 460
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQ 87
+W + G+ + E+I V+ M ++PN+ T+ +L +CA + GL G+Q
Sbjct: 80 TWNMLSRGYSSSDSPVESIWVYSEM--KRRGIKPNKLTFPFLLKACASFL---GLTAGRQ 134
Query: 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSR 147
+ +L++ V++G LI LYG A +VF M ++V +WN+++++L N +
Sbjct: 135 IQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGK 194
Query: 148 EKEALVMFDEMKEKGLRANEITFVAVLTAC 177
F EM K +E T V +L+AC
Sbjct: 195 LNLVFECFCEMIGKRFCPDETTMVVLLSAC 224
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K+G ++ A L+FE M+ ++V +W+++I G + G EA+ +F MM + VR
Sbjct: 253 LVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESS-VR 311
Query: 61 PNEATYVSVLSSCA--GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
PN T++ VL +C+ GLV++G Y H ++I + A++D+ G+ G L
Sbjct: 312 PNYVTFLGVLCACSHTGLVDDGYKYF----HEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 119 RAIRVFKSMVIK-DVCTWNAMISSLASNSREKE 150
A K M + D W ++S+ + + E +
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDD 400
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 8/313 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GYV G +D A +LFE +DVV WT+++NG+V+ F EA+ +F+ M +R
Sbjct: 219 MVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM--QTAGIR 276
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ VS+L+ CA G L GK +HGYI N + + +GTAL+D+Y K GC+E A
Sbjct: 277 PDNFVLVSLLTGCA---QTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETA 333
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF + +D +W ++I LA N AL ++ EM+ G+R + ITFVAVLTAC
Sbjct: 334 LEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHG 393
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS---V 237
V G ++FHSM + V P EH C++DLL RAGLL EA+E + M E D + V
Sbjct: 394 GFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPV 453
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
+LL A + +G V + V +L +++ + +L++++A RW T++R+ M +
Sbjct: 454 YCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKD 513
Query: 298 AGIRKIPAYSLIE 310
GIRK P S IE
Sbjct: 514 LGIRKFPGCSSIE 526
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 148/307 (48%), Gaps = 54/307 (17%)
Query: 2 IDGYVKN---------GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM 52
D YV N G ++ +F+ M +RDVVSW +I+ +V NG F +AI VFK M
Sbjct: 79 FDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRM 138
Query: 53 MGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112
NL + +E T VS LS+C+ L N L +G++++ +++ E +SV +G AL+D++
Sbjct: 139 SQESNL-KFDEGTIVSTLSACSALKN---LEIGERIYRFVV-TEFEMSVRIGNALVDMFC 193
Query: 113 KVGCLERAIRVFKSM-------------------------------VIKDVCTWNAMISS 141
K GCL++A VF SM +KDV W AM++
Sbjct: 194 KCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNG 253
Query: 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201
+R EAL +F M+ G+R + V++LT CA+ +E G + H + + V
Sbjct: 254 YVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTV 312
Query: 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG----AVDLCHE- 256
+VD+ + G + A E + E D + +L+ ++G A+DL +E
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIK-ERDTASWTSLIYGLAMNGMSGRALDLYYEM 371
Query: 257 --VGRRL 261
VG RL
Sbjct: 372 ENVGVRL 378
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 25/290 (8%)
Query: 14 AILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC 73
++L++ MLK S+ +G F + + +F + G + P+ T VL S
Sbjct: 10 SLLMYNKMLK-------SLADG----KSFTKVLALFGELRGQG--LYPDNFTLPVVLKSI 56
Query: 74 AGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVC 133
L + G++VHGY ++ + ++ +L+ +Y +G +E +VF M +DV
Sbjct: 57 GRLRK---VIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVV 113
Query: 134 TWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACARAQLVELGLELFHS 192
+WN +ISS N R ++A+ +F M +E L+ +E T V+ L+AC+ + +E+G ++
Sbjct: 114 SWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRF 173
Query: 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252
++ +FE+ + + +VD+ + G L +A+ SM + + +++ G +D
Sbjct: 174 VVTEFEMSVRIGN--ALVDMFCKCGCLDKARAVFDSMR-DKNVKCWTSMVFGYVSTGRID 230
Query: 253 LCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301
R L E P K + + N + R++ A +L + M AGIR
Sbjct: 231 ----EARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIR 276
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 179/295 (60%), Gaps = 4/295 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY G + A +F++M RDVVSW +++ + GC+ E + VF M+ + + +
Sbjct: 243 MISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD-STEK 301
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T VSVLS+CA L G L G+ VH YI ++ I + F+ TAL+D+Y K G +++A
Sbjct: 302 PDGFTLVSVLSACASL---GSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKA 358
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF++ +DV TWN++IS L+ + K+AL +F EM +G + N ITF+ VL+AC
Sbjct: 359 LEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHV 418
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+++ +LF M + V P +EHYGC+VDLLGR G + EA+E + +P + + +L +
Sbjct: 419 GMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLES 478
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295
LLGACK G ++ + RLLEL + Y +SN++A RW + D R+ M
Sbjct: 479 LLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNM 533
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVH 89
S+I + + A+ VF+ M+ + V P++ ++ VL +CA G G+Q+H
Sbjct: 109 NSVIRAYANSSTPEVALTVFREML--LGPVFPDKYSFTFVLKACAAFC---GFEEGRQIH 163
Query: 90 GYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREK 149
G +++ +V VF+ L+++YG+ G E A +V M ++D +WN+++S+
Sbjct: 164 GLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVD 223
Query: 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME--HYG 207
EA +FDEM+E+ + ++ +++ A A LV+ E+F SM P+ + +
Sbjct: 224 EARALFDEMEERNVE----SWNFMISGYAAAGLVKEAKEVFDSM-------PVRDVVSWN 272
Query: 208 CVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAV 251
+V G +E E M +PD L ++L AC G++
Sbjct: 273 AMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSL 320
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 47/250 (18%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+++ Y ++G + A + + M RD VSW S+++ ++ G EA +F M
Sbjct: 181 LVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME------- 233
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ V + +I Y G ++ A
Sbjct: 234 ------------------------ERNVESW-------------NFMISGYAAAGLVKEA 256
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACAR 179
VF SM ++DV +WNAM+++ A E L +F++M + + + T V+VL+ACA
Sbjct: 257 KEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACAS 316
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ G E H + K + +VD+ + G + +A E R+ + D S
Sbjct: 317 LGSLSQG-EWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATS-KRDVSTWN 374
Query: 240 ALLGACKIHG 249
+++ +HG
Sbjct: 375 SIISDLSVHG 384
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 177/310 (57%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K G +D A +F+ ++++DVVSWTS+I+ + ++ + E +F ++G+ R
Sbjct: 259 LMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCE--R 316
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T+ VL++CA L E LGKQVHGY+ R F ++L+D+Y K G +E A
Sbjct: 317 PNEYTFAGVLNACADLTTEE---LGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESA 373
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
V D+ +W ++I A N + EAL FD + + G + + +TFV VL+AC A
Sbjct: 374 KHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHA 433
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLE F+S+ K + +HY C+VDLL R+G + K + MP +P + +
Sbjct: 434 GLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWAS 493
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
+LG C +G +DL E + L +++P++ YV ++NI+A +W +RK M E G+
Sbjct: 494 VLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGV 553
Query: 301 RKIPAYSLIE 310
K P S E
Sbjct: 554 TKRPGSSWTE 563
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 149/285 (52%), Gaps = 9/285 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M++GY + G ++ A LF+ M ++D SWT+++ G+V+ EA+ ++ ++M V R
Sbjct: 157 MVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY-SLMQRVPNSR 215
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VS+ + A V + GK++HG+I+R + + ++L+D+YGK GC++ A
Sbjct: 216 PNIFT-VSIAVAAAAAVK--CIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEA 272
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+F +V KDV +W +MI +SR +E +F E+ R NE TF VL ACA
Sbjct: 273 RNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADL 332
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
ELG ++ H + + P +VD+ + G + AK + P +PD +
Sbjct: 333 TTEELGKQV-HGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTS 390
Query: 241 LLGACKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLSN-IHAGL 282
L+G C +G D + LL+ +P H VLS HAGL
Sbjct: 391 LIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGL 435
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 32 IINGFVRNGCFGEAI---CVFKNMMGNVNLV----RPNEATYVSVLSSCAGLVNEGGLYL 84
++ R FGEAI C K + V L+ +P +TY +++ C+ L
Sbjct: 47 VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCS---QTRALEE 103
Query: 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLAS 144
GK+VH +I + V + + L+ +Y K G L A +VF M +D+C+WN M++ A
Sbjct: 104 GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAE 163
Query: 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193
+EA +FDEM EK + ++ A++T + E L L+ M
Sbjct: 164 VGLLEEARKLFDEMTEK----DSYSWTAMVTGYVKKDQPEEALVLYSLM 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,705,835
Number of Sequences: 539616
Number of extensions: 4299026
Number of successful extensions: 16708
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 11851
Number of HSP's gapped (non-prelim): 1967
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)