Query 040965
Match_columns 311
No_of_seqs 464 out of 1328
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.2E-56 7E-61 396.1 31.6 306 1-311 265-570 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 9.4E-52 2E-56 375.5 30.8 304 1-311 430-733 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.6E-50 5.6E-55 362.3 35.1 298 1-304 478-789 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.6E-50 1E-54 360.7 35.2 298 1-304 443-754 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-49 2.7E-54 354.0 31.7 297 1-304 164-462 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.5E-47 5.4E-52 346.7 31.5 298 1-305 228-525 (857)
7 PRK11788 tetratricopeptide rep 100.0 1.9E-25 4.1E-30 187.3 30.9 295 5-308 45-357 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 4.7E-22 1E-26 183.8 32.8 287 2-300 574-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 6.1E-22 1.3E-26 183.1 33.1 281 4-295 610-897 (899)
10 PRK11788 tetratricopeptide rep 99.9 2E-20 4.4E-25 157.0 29.7 258 32-299 41-312 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.2E-20 9.1E-25 162.9 31.3 157 139-298 219-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 5.6E-19 1.2E-23 155.8 32.5 290 2-301 49-350 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 4.4E-20 9.6E-25 151.7 19.0 286 3-300 124-453 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 6.8E-18 1.5E-22 149.2 33.8 288 3-301 135-499 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 3.2E-19 6.8E-24 146.8 21.0 281 8-300 197-487 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.9E-17 4.1E-22 146.3 32.6 216 79-298 344-571 (615)
17 PRK11447 cellulose synthase su 99.8 2.6E-17 5.7E-22 154.5 34.1 287 4-297 278-665 (1157)
18 PRK11447 cellulose synthase su 99.8 6.2E-17 1.3E-21 152.0 32.7 285 4-299 360-701 (1157)
19 PF13429 TPR_15: Tetratricopep 99.8 3E-19 6.6E-24 142.6 12.2 258 31-297 13-276 (280)
20 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.2E-20 136.9 31.6 286 4-298 58-422 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.9E-20 137.2 31.1 292 2-301 90-459 (765)
22 KOG1126 DNA-binding cell divis 99.8 1.3E-16 2.8E-21 132.4 22.5 279 10-301 334-623 (638)
23 PRK10747 putative protoheme IX 99.8 2E-15 4.2E-20 126.2 29.5 277 8-297 97-389 (398)
24 PRK09782 bacteriophage N4 rece 99.8 5.4E-15 1.2E-19 134.3 33.3 286 5-300 386-708 (987)
25 PRK09782 bacteriophage N4 rece 99.7 6.6E-15 1.4E-19 133.7 29.9 262 25-301 476-743 (987)
26 COG2956 Predicted N-acetylgluc 99.7 1.4E-14 3E-19 110.8 26.0 295 8-308 48-357 (389)
27 PRK14574 hmsH outer membrane p 99.7 3.3E-14 7.2E-19 126.7 30.8 288 2-298 75-479 (822)
28 TIGR00540 hemY_coli hemY prote 99.7 5.6E-14 1.2E-18 118.0 28.9 282 6-297 95-398 (409)
29 PRK10747 putative protoheme IX 99.7 2.7E-14 5.8E-19 119.4 26.7 254 38-301 96-360 (398)
30 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 128.1 10.9 248 3-263 16-276 (280)
31 KOG2076 RNA polymerase III tra 99.7 6.5E-14 1.4E-18 120.3 27.6 286 5-299 149-513 (895)
32 TIGR00540 hemY_coli hemY prote 99.7 4.6E-14 1E-18 118.5 26.4 262 37-304 95-370 (409)
33 PRK14574 hmsH outer membrane p 99.7 2.5E-13 5.4E-18 121.2 31.9 291 3-301 110-516 (822)
34 KOG4422 Uncharacterized conser 99.7 2.7E-13 5.8E-18 107.7 26.7 274 17-299 198-552 (625)
35 TIGR02521 type_IV_pilW type IV 99.7 1.3E-13 2.9E-18 107.2 23.6 199 99-298 29-232 (234)
36 KOG0547 Translocase of outer m 99.7 2.1E-13 4.6E-18 109.9 23.9 189 104-296 363-564 (606)
37 KOG2003 TPR repeat-containing 99.7 2.8E-13 6.1E-18 108.5 24.1 270 4-284 428-709 (840)
38 KOG1155 Anaphase-promoting com 99.6 4.5E-13 9.8E-18 107.3 25.0 162 133-297 331-494 (559)
39 KOG1126 DNA-binding cell divis 99.6 1.7E-14 3.7E-19 120.1 17.3 211 82-298 335-586 (638)
40 COG3071 HemY Uncharacterized e 99.6 4.4E-12 9.5E-17 100.0 29.3 282 8-302 97-394 (400)
41 KOG1155 Anaphase-promoting com 99.6 8.9E-13 1.9E-17 105.6 24.0 255 31-296 267-534 (559)
42 PRK12370 invasion protein regu 99.6 1.8E-12 4E-17 113.0 24.7 261 25-299 255-536 (553)
43 COG3071 HemY Uncharacterized e 99.6 1.7E-11 3.7E-16 96.7 25.9 253 38-300 96-359 (400)
44 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4E-16 94.0 25.3 252 37-298 46-311 (389)
45 KOG2002 TPR-containing nuclear 99.5 2.5E-11 5.3E-16 105.6 26.3 202 95-300 446-677 (1018)
46 KOG4422 Uncharacterized conser 99.5 4.2E-11 9.2E-16 95.5 25.3 294 1-301 213-593 (625)
47 PRK12370 invasion protein regu 99.5 6.2E-12 1.4E-16 109.7 23.0 229 62-297 255-501 (553)
48 PRK11189 lipoprotein NlpI; Pro 99.5 2.1E-11 4.6E-16 97.9 22.4 210 82-300 42-267 (296)
49 KOG1840 Kinesin light chain [C 99.5 4.2E-11 9.2E-16 100.6 24.7 220 78-297 211-478 (508)
50 KOG2002 TPR-containing nuclear 99.5 5.8E-11 1.3E-15 103.4 25.9 298 3-307 278-602 (1018)
51 KOG1173 Anaphase-promoting com 99.5 4.9E-11 1.1E-15 98.1 23.6 262 25-297 243-517 (611)
52 TIGR02521 type_IV_pilW type IV 99.5 3.8E-11 8.2E-16 93.3 22.7 183 79-264 44-232 (234)
53 KOG1129 TPR repeat-containing 99.5 5E-12 1.1E-16 97.3 16.3 216 79-299 236-459 (478)
54 KOG2003 TPR repeat-containing 99.5 3.5E-11 7.6E-16 96.8 21.1 259 34-300 427-691 (840)
55 KOG0495 HAT repeat protein [RN 99.5 4.3E-10 9.3E-15 94.3 27.9 288 7-309 596-889 (913)
56 PF13041 PPR_2: PPR repeat fam 99.5 2.3E-13 5.1E-18 77.8 6.4 50 130-179 1-50 (50)
57 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 95.6 16.6 229 30-268 227-462 (478)
58 KOG1915 Cell cycle control pro 99.5 5.5E-10 1.2E-14 90.4 26.6 283 7-299 153-501 (677)
59 COG3063 PilF Tfp pilus assembl 99.4 1.7E-11 3.7E-16 89.9 16.6 196 102-298 36-236 (250)
60 KOG1840 Kinesin light chain [C 99.4 5.9E-11 1.3E-15 99.7 21.7 233 28-263 201-478 (508)
61 KOG0495 HAT repeat protein [RN 99.4 1.9E-09 4.1E-14 90.6 29.1 268 27-308 517-790 (913)
62 PF12569 NARP1: NMDA receptor- 99.4 7.6E-10 1.7E-14 94.1 27.2 287 3-298 12-334 (517)
63 KOG0547 Translocase of outer m 99.4 4.5E-10 9.8E-15 91.1 24.4 286 3-298 123-491 (606)
64 KOG1174 Anaphase-promoting com 99.4 6.4E-10 1.4E-14 88.5 24.1 280 8-302 209-504 (564)
65 PF13041 PPR_2: PPR repeat fam 99.4 8E-13 1.7E-17 75.5 6.0 49 24-74 1-49 (50)
66 PRK11189 lipoprotein NlpI; Pro 99.4 1.1E-09 2.3E-14 88.1 25.4 229 39-279 39-281 (296)
67 KOG4340 Uncharacterized conser 99.4 5.6E-10 1.2E-14 85.2 21.9 282 3-294 18-335 (459)
68 KOG1174 Anaphase-promoting com 99.4 4.6E-10 1E-14 89.3 21.7 263 2-275 239-511 (564)
69 KOG2076 RNA polymerase III tra 99.4 2.8E-09 6.2E-14 92.4 27.0 289 3-298 181-555 (895)
70 COG3063 PilF Tfp pilus assembl 99.3 1.4E-09 3E-14 80.1 20.7 159 138-300 41-204 (250)
71 PF04733 Coatomer_E: Coatomer 99.3 3E-10 6.5E-15 90.1 18.1 249 5-269 11-270 (290)
72 PF04733 Coatomer_E: Coatomer 99.3 1.1E-09 2.4E-14 86.9 20.7 245 33-299 8-266 (290)
73 PF12569 NARP1: NMDA receptor- 99.3 4.7E-09 1E-13 89.4 24.9 258 33-300 11-293 (517)
74 KOG0624 dsRNA-activated protei 99.3 1.6E-08 3.5E-13 78.9 25.0 288 4-301 47-373 (504)
75 KOG1173 Anaphase-promoting com 99.3 6.9E-09 1.5E-13 85.8 23.6 260 4-271 253-525 (611)
76 KOG1915 Cell cycle control pro 99.3 1.9E-08 4.1E-13 81.7 25.5 143 8-159 86-234 (677)
77 KOG4162 Predicted calmodulin-b 99.3 2.3E-08 5E-13 85.6 27.3 290 4-300 332-785 (799)
78 cd05804 StaR_like StaR_like; a 99.2 8.8E-08 1.9E-12 79.6 29.0 289 5-299 16-337 (355)
79 KOG4318 Bicoid mRNA stability 99.2 1.3E-09 2.9E-14 94.3 17.4 235 49-306 13-273 (1088)
80 KOG1125 TPR repeat-containing 99.2 1.8E-09 3.8E-14 89.4 16.9 217 78-297 297-526 (579)
81 KOG1070 rRNA processing protei 99.2 3.9E-09 8.4E-14 95.5 20.2 210 89-303 1447-1668(1710)
82 cd05804 StaR_like StaR_like; a 99.2 1.7E-07 3.7E-12 77.9 28.3 269 26-299 6-294 (355)
83 TIGR03302 OM_YfiO outer membra 99.2 6E-09 1.3E-13 81.2 17.7 182 100-299 32-233 (235)
84 KOG2047 mRNA splicing factor [ 99.1 1.5E-06 3.3E-11 73.5 28.7 119 9-127 152-274 (835)
85 KOG1156 N-terminal acetyltrans 99.0 1.3E-06 2.8E-11 73.9 26.8 283 6-300 52-436 (700)
86 PRK10370 formate-dependent nit 99.0 3.1E-08 6.7E-13 74.4 16.0 151 108-269 23-178 (198)
87 KOG0548 Molecular co-chaperone 99.0 5.4E-07 1.2E-11 74.5 23.8 286 4-299 11-456 (539)
88 KOG3081 Vesicle coat complex C 99.0 1.4E-06 3.1E-11 65.9 23.8 175 88-269 95-276 (299)
89 TIGR03302 OM_YfiO outer membra 99.0 5.7E-08 1.2E-12 75.7 17.3 171 75-266 42-234 (235)
90 KOG2376 Signal recognition par 99.0 2.6E-06 5.7E-11 71.4 26.6 119 171-293 380-515 (652)
91 KOG3081 Vesicle coat complex C 99.0 3.9E-07 8.5E-12 68.8 19.3 244 33-297 15-270 (299)
92 PRK04841 transcriptional regul 99.0 2.8E-06 6E-11 79.6 29.8 292 5-299 419-761 (903)
93 PRK14720 transcript cleavage f 99.0 3.4E-07 7.5E-12 82.1 22.4 240 25-295 30-280 (906)
94 KOG4318 Bicoid mRNA stability 99.0 1.5E-07 3.2E-12 82.2 19.2 237 22-285 21-287 (1088)
95 KOG1125 TPR repeat-containing 99.0 9.8E-08 2.1E-12 79.4 16.8 209 5-226 295-521 (579)
96 PRK15359 type III secretion sy 98.9 8.5E-08 1.8E-12 68.3 14.1 121 153-279 14-136 (144)
97 KOG2047 mRNA splicing factor [ 98.9 1.1E-05 2.4E-10 68.5 28.1 192 102-295 388-612 (835)
98 PRK15359 type III secretion sy 98.9 3.1E-08 6.6E-13 70.5 11.6 110 187-301 13-124 (144)
99 COG5010 TadD Flp pilus assembl 98.9 4.2E-07 9.2E-12 68.6 17.7 155 136-293 70-226 (257)
100 PRK10370 formate-dependent nit 98.9 4.7E-07 1E-11 68.1 18.1 148 140-301 24-176 (198)
101 PLN02789 farnesyltranstransfer 98.9 2.7E-06 5.9E-11 68.7 23.4 211 82-296 53-300 (320)
102 PF12854 PPR_1: PPR repeat 98.9 3.1E-09 6.7E-14 54.6 4.0 33 95-127 1-33 (34)
103 KOG1070 rRNA processing protei 98.9 2.6E-06 5.6E-11 78.0 23.9 195 26-229 1458-1660(1710)
104 PF12854 PPR_1: PPR repeat 98.9 4.5E-09 9.7E-14 54.0 4.1 32 198-229 2-33 (34)
105 KOG0624 dsRNA-activated protei 98.9 8.2E-06 1.8E-10 64.2 23.6 263 25-298 37-336 (504)
106 KOG3785 Uncharacterized conser 98.9 8.2E-06 1.8E-10 64.5 23.7 151 5-161 32-214 (557)
107 PRK04841 transcriptional regul 98.9 1.3E-05 2.8E-10 75.2 29.8 292 6-298 385-720 (903)
108 PLN02789 farnesyltranstransfer 98.9 1.1E-05 2.3E-10 65.3 25.1 236 28-273 39-311 (320)
109 PRK15179 Vi polysaccharide bio 98.8 1.1E-06 2.3E-11 78.0 20.8 157 131-298 85-245 (694)
110 KOG3785 Uncharacterized conser 98.8 6.3E-06 1.4E-10 65.1 22.4 284 9-302 165-494 (557)
111 COG5010 TadD Flp pilus assembl 98.8 9.8E-07 2.1E-11 66.6 15.7 134 164-300 63-199 (257)
112 KOG1128 Uncharacterized conser 98.8 4.4E-07 9.6E-12 77.6 15.3 191 99-298 396-616 (777)
113 KOG3616 Selective LIM binding 98.8 1.7E-06 3.6E-11 74.6 18.6 136 107-260 738-875 (1636)
114 TIGR02552 LcrH_SycD type III s 98.7 2.4E-07 5.2E-12 65.5 11.2 100 168-269 18-119 (135)
115 KOG1156 N-terminal acetyltrans 98.7 1.5E-05 3.3E-10 67.7 22.9 205 28-242 43-259 (700)
116 KOG3617 WD40 and TPR repeat-co 98.7 6.4E-06 1.4E-10 71.9 21.0 231 4-263 737-995 (1416)
117 KOG2376 Signal recognition par 98.7 8.3E-06 1.8E-10 68.5 20.9 49 113-161 91-139 (652)
118 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1E-06 2.2E-11 72.6 15.6 128 102-233 170-298 (395)
119 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.5E-07 9.8E-12 74.6 13.4 124 168-296 170-295 (395)
120 PRK15179 Vi polysaccharide bio 98.7 1.3E-05 2.9E-10 71.3 23.3 157 97-262 82-243 (694)
121 COG4783 Putative Zn-dependent 98.7 4.2E-05 9E-10 63.1 24.0 119 141-263 315-436 (484)
122 KOG1128 Uncharacterized conser 98.7 3E-06 6.5E-11 72.8 18.1 212 29-263 401-615 (777)
123 KOG3060 Uncharacterized conser 98.7 1.4E-05 3.1E-10 60.2 19.5 188 82-272 28-228 (289)
124 KOG4340 Uncharacterized conser 98.7 1.7E-06 3.7E-11 66.6 15.1 197 104-306 13-215 (459)
125 KOG3616 Selective LIM binding 98.7 7.2E-06 1.6E-10 70.8 19.4 187 79-292 745-931 (1636)
126 COG4783 Putative Zn-dependent 98.6 7E-06 1.5E-10 67.5 18.0 127 168-297 308-436 (484)
127 TIGR02552 LcrH_SycD type III s 98.6 1.8E-06 3.8E-11 61.0 12.7 96 204-299 18-115 (135)
128 PRK15363 pathogenicity island 98.6 1.4E-06 3.1E-11 61.3 11.8 96 204-299 36-133 (157)
129 KOG3060 Uncharacterized conser 98.6 9.6E-06 2.1E-10 61.1 16.3 183 115-300 26-222 (289)
130 PF09976 TPR_21: Tetratricopep 98.5 9.7E-06 2.1E-10 57.9 14.8 115 145-261 24-144 (145)
131 KOG1127 TPR repeat-containing 98.5 1.2E-05 2.5E-10 71.6 17.4 80 79-159 575-657 (1238)
132 PRK14720 transcript cleavage f 98.5 1.8E-05 4E-10 71.4 18.9 205 63-301 31-255 (906)
133 KOG0985 Vesicle coat protein c 98.5 0.00014 3E-09 65.4 23.3 237 25-295 1103-1367(1666)
134 KOG4162 Predicted calmodulin-b 98.5 0.00022 4.8E-09 62.1 24.0 259 37-297 238-541 (799)
135 PF09976 TPR_21: Tetratricopep 98.5 1.9E-05 4.2E-10 56.4 15.3 125 28-157 14-143 (145)
136 TIGR02795 tol_pal_ybgF tol-pal 98.5 3.8E-06 8.2E-11 57.7 11.3 101 170-270 5-111 (119)
137 KOG1127 TPR repeat-containing 98.5 3.7E-05 8E-10 68.6 19.4 180 117-297 474-658 (1238)
138 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.6E-06 5.7E-11 58.5 10.4 98 204-301 3-108 (119)
139 KOG3617 WD40 and TPR repeat-co 98.5 5.1E-05 1.1E-09 66.5 19.7 271 3-296 765-1107(1416)
140 cd00189 TPR Tetratricopeptide 98.5 2.3E-06 4.9E-11 55.9 9.5 93 206-298 3-97 (100)
141 TIGR00756 PPR pentatricopeptid 98.5 3.9E-07 8.5E-12 47.4 4.2 33 134-166 2-34 (35)
142 KOG0548 Molecular co-chaperone 98.4 0.00012 2.7E-09 61.0 19.6 237 28-280 226-471 (539)
143 KOG1914 mRNA cleavage and poly 98.4 0.0008 1.7E-08 56.6 26.0 120 183-304 347-470 (656)
144 PF13414 TPR_11: TPR repeat; P 98.4 1.9E-06 4.1E-11 52.9 7.1 66 234-299 2-68 (69)
145 PF13812 PPR_3: Pentatricopept 98.4 6.7E-07 1.4E-11 46.2 4.2 33 133-165 2-34 (34)
146 KOG2053 Mitochondrial inherita 98.4 0.00041 9E-09 61.5 23.2 224 37-268 20-259 (932)
147 PF12895 Apc3: Anaphase-promot 98.4 6E-07 1.3E-11 57.5 4.6 77 217-294 3-83 (84)
148 TIGR00756 PPR pentatricopeptid 98.4 6.5E-07 1.4E-11 46.6 3.9 34 28-63 2-35 (35)
149 PF13432 TPR_16: Tetratricopep 98.4 1.9E-06 4.1E-11 52.1 6.4 60 241-300 3-62 (65)
150 PLN03088 SGT1, suppressor of 98.3 4E-06 8.6E-11 69.2 9.7 104 173-278 8-113 (356)
151 PRK02603 photosystem I assembl 98.3 1.1E-05 2.3E-10 59.6 11.0 94 205-298 37-149 (172)
152 KOG0550 Molecular chaperone (D 98.3 6.2E-05 1.3E-09 60.8 15.5 264 28-305 51-357 (486)
153 PF14938 SNAP: Soluble NSF att 98.3 0.00018 3.8E-09 57.7 18.4 212 28-268 37-267 (282)
154 PF13812 PPR_3: Pentatricopept 98.3 9.3E-07 2E-11 45.6 3.6 33 27-61 2-34 (34)
155 COG4235 Cytochrome c biogenesi 98.3 2.4E-05 5.2E-10 60.8 12.2 110 200-309 153-267 (287)
156 KOG0985 Vesicle coat protein c 98.3 0.00059 1.3E-08 61.6 21.2 235 25-291 983-1242(1666)
157 cd00189 TPR Tetratricopeptide 98.2 1.7E-05 3.7E-10 51.6 9.5 92 135-229 3-94 (100)
158 PF12895 Apc3: Anaphase-promot 98.2 1E-05 2.3E-10 51.7 8.1 78 80-157 3-83 (84)
159 CHL00033 ycf3 photosystem I as 98.2 2.8E-05 6E-10 57.1 11.1 110 185-294 17-138 (168)
160 PRK10153 DNA-binding transcrip 98.2 0.00019 4E-09 62.2 17.3 137 131-269 336-487 (517)
161 PF08579 RPM2: Mitochondrial r 98.2 3.7E-05 8.1E-10 50.5 9.8 80 135-215 28-116 (120)
162 KOG0553 TPR repeat-containing 98.2 4E-06 8.7E-11 64.7 6.3 101 175-278 89-192 (304)
163 PF14938 SNAP: Soluble NSF att 98.2 5.9E-05 1.3E-09 60.4 13.1 189 105-295 39-263 (282)
164 PRK02603 photosystem I assembl 98.2 6.7E-05 1.4E-09 55.3 12.5 128 131-282 34-164 (172)
165 PF05843 Suf: Suppressor of fo 98.2 4.8E-05 1E-09 60.7 12.2 143 133-279 2-150 (280)
166 KOG1130 Predicted G-alpha GTPa 98.2 5.8E-05 1.3E-09 61.0 12.2 129 169-297 197-343 (639)
167 PLN03088 SGT1, suppressor of 98.2 4.8E-05 1E-09 62.9 12.4 103 138-244 8-112 (356)
168 PRK15363 pathogenicity island 98.2 0.00015 3.3E-09 51.3 12.9 100 102-202 36-138 (157)
169 PF05843 Suf: Suppressor of fo 98.1 0.00013 2.7E-09 58.3 13.9 143 102-245 2-150 (280)
170 PF01535 PPR: PPR repeat; Int 98.1 4E-06 8.6E-11 42.1 3.6 29 134-162 2-30 (31)
171 PF14559 TPR_19: Tetratricopep 98.1 5.5E-06 1.2E-10 50.6 4.8 55 246-300 2-56 (68)
172 KOG0553 TPR repeat-containing 98.1 4.1E-05 8.8E-10 59.3 9.7 103 138-244 87-191 (304)
173 PF13371 TPR_9: Tetratricopept 98.1 1.6E-05 3.4E-10 49.3 6.1 59 243-301 3-61 (73)
174 PF10037 MRP-S27: Mitochondria 98.1 7.9E-05 1.7E-09 62.0 11.8 118 98-216 63-186 (429)
175 PRK10866 outer membrane biogen 98.0 0.0033 7.1E-08 49.0 19.7 53 175-227 183-236 (243)
176 PF13432 TPR_16: Tetratricopep 98.0 1.9E-05 4.2E-10 47.6 5.6 60 209-268 3-64 (65)
177 COG4700 Uncharacterized protei 98.0 0.0026 5.7E-08 46.1 16.6 127 164-292 86-216 (251)
178 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.2E-10 40.6 3.4 30 271-300 2-31 (31)
179 PRK10153 DNA-binding transcrip 98.0 0.00039 8.4E-09 60.2 14.9 141 96-239 332-490 (517)
180 PRK10803 tol-pal system protei 98.0 0.00011 2.4E-09 57.7 10.5 100 170-269 146-251 (263)
181 CHL00033 ycf3 photosystem I as 98.0 0.0003 6.4E-09 51.7 12.3 62 134-195 37-100 (168)
182 PRK10866 outer membrane biogen 98.0 0.0027 5.9E-08 49.5 17.8 58 137-194 180-239 (243)
183 PF08579 RPM2: Mitochondrial r 98.0 0.00024 5.2E-09 46.8 9.8 84 28-113 27-116 (120)
184 PF10037 MRP-S27: Mitochondria 97.9 0.00036 7.9E-09 58.2 13.4 100 164-263 63-166 (429)
185 KOG2053 Mitochondrial inherita 97.9 0.0082 1.8E-07 53.7 21.8 217 79-301 22-258 (932)
186 PF14559 TPR_19: Tetratricopep 97.9 5.1E-05 1.1E-09 46.2 6.3 62 5-70 1-65 (68)
187 KOG1914 mRNA cleavage and poly 97.9 0.0086 1.9E-07 50.7 20.6 207 42-253 309-528 (656)
188 PF06239 ECSIT: Evolutionarily 97.9 0.00017 3.7E-09 53.5 9.7 97 122-219 35-154 (228)
189 PF13281 DUF4071: Domain of un 97.9 0.0033 7.1E-08 51.6 17.6 164 102-268 142-338 (374)
190 PF13525 YfiO: Outer membrane 97.9 0.0028 6.2E-08 48.0 16.3 50 5-54 15-70 (203)
191 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.7E-08 44.9 12.5 109 31-142 6-116 (120)
192 PF03704 BTAD: Bacterial trans 97.8 0.00065 1.4E-08 48.6 11.8 70 237-306 64-138 (146)
193 COG3898 Uncharacterized membra 97.8 0.011 2.4E-07 48.0 23.6 115 39-160 97-216 (531)
194 PF04840 Vps16_C: Vps16, C-ter 97.8 0.012 2.7E-07 47.7 21.7 106 169-291 179-284 (319)
195 PF12688 TPR_5: Tetratrico pep 97.8 0.0011 2.4E-08 45.2 11.3 91 138-228 7-100 (120)
196 PF13414 TPR_11: TPR repeat; P 97.8 6.2E-05 1.3E-09 46.0 4.8 63 204-266 4-69 (69)
197 PRK15331 chaperone protein Sic 97.8 0.0007 1.5E-08 48.2 10.4 86 176-263 46-133 (165)
198 PRK10803 tol-pal system protei 97.8 0.00075 1.6E-08 53.1 11.7 98 204-301 144-249 (263)
199 COG4700 Uncharacterized protei 97.8 0.0075 1.6E-07 43.8 15.9 133 130-262 87-220 (251)
200 PF06239 ECSIT: Evolutionarily 97.8 0.00062 1.4E-08 50.6 10.4 100 13-116 32-153 (228)
201 PF13281 DUF4071: Domain of un 97.6 0.015 3.2E-07 47.8 17.7 166 133-299 142-335 (374)
202 PF13525 YfiO: Outer membrane 97.6 0.016 3.5E-07 44.0 19.4 186 26-223 5-198 (203)
203 PF07079 DUF1347: Protein of u 97.6 0.031 6.7E-07 46.5 25.6 114 179-296 391-522 (549)
204 PF13431 TPR_17: Tetratricopep 97.5 7.8E-05 1.7E-09 38.1 2.2 33 257-289 1-33 (34)
205 PF10300 DUF3808: Protein of u 97.5 0.011 2.5E-07 50.9 16.5 162 29-194 191-374 (468)
206 PF07079 DUF1347: Protein of u 97.5 0.04 8.6E-07 45.9 19.7 255 5-269 16-332 (549)
207 PF13424 TPR_12: Tetratricopep 97.5 0.00039 8.5E-09 43.6 5.8 62 236-297 6-74 (78)
208 KOG0543 FKBP-type peptidyl-pro 97.5 0.0031 6.7E-08 51.4 11.9 94 205-298 259-355 (397)
209 PF13371 TPR_9: Tetratricopept 97.5 0.00071 1.5E-08 41.8 6.8 62 211-272 3-66 (73)
210 KOG2796 Uncharacterized conser 97.5 0.007 1.5E-07 46.5 13.0 138 131-269 176-320 (366)
211 PF13428 TPR_14: Tetratricopep 97.5 0.00033 7.1E-09 38.3 4.6 42 236-277 2-43 (44)
212 COG3898 Uncharacterized membra 97.5 0.04 8.6E-07 45.0 27.2 273 8-297 97-391 (531)
213 COG4235 Cytochrome c biogenesi 97.5 0.0075 1.6E-07 47.3 13.3 111 164-277 153-268 (287)
214 KOG0550 Molecular chaperone (D 97.5 0.021 4.6E-07 46.8 16.0 261 4-267 58-353 (486)
215 PF03704 BTAD: Bacterial trans 97.5 0.0078 1.7E-07 42.9 12.7 73 133-206 63-139 (146)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00069 1.5E-08 56.2 7.9 98 202-302 74-178 (453)
217 KOG2796 Uncharacterized conser 97.4 0.033 7.1E-07 43.0 17.5 136 105-242 181-326 (366)
218 KOG2280 Vacuolar assembly/sort 97.4 0.074 1.6E-06 47.1 19.9 110 168-293 685-794 (829)
219 PF13424 TPR_12: Tetratricopep 97.4 0.0011 2.4E-08 41.5 6.9 25 103-127 7-31 (78)
220 PF12921 ATP13: Mitochondrial 97.4 0.0027 5.8E-08 43.8 9.0 79 133-211 3-96 (126)
221 KOG1538 Uncharacterized conser 97.4 0.028 6E-07 48.9 16.5 233 4-263 565-845 (1081)
222 KOG1130 Predicted G-alpha GTPa 97.3 0.00085 1.8E-08 54.6 7.0 222 75-296 26-302 (639)
223 PF08631 SPO22: Meiosis protei 97.3 0.059 1.3E-06 43.2 21.9 49 5-54 3-64 (278)
224 COG4105 ComL DNA uptake lipopr 97.3 0.05 1.1E-06 41.9 18.9 55 242-296 174-231 (254)
225 KOG1538 Uncharacterized conser 97.2 0.11 2.4E-06 45.4 18.4 205 82-299 616-847 (1081)
226 COG1729 Uncharacterized protei 97.1 0.0089 1.9E-07 46.3 10.4 92 206-298 145-244 (262)
227 COG0457 NrfG FOG: TPR repeat [ 97.1 0.075 1.6E-06 40.7 22.9 220 39-267 36-268 (291)
228 PRK15331 chaperone protein Sic 97.1 0.057 1.2E-06 38.7 13.5 81 79-160 50-133 (165)
229 PF12921 ATP13: Mitochondrial 97.1 0.013 2.8E-07 40.4 9.9 78 101-178 2-99 (126)
230 PF13512 TPR_18: Tetratricopep 97.1 0.023 5E-07 39.7 11.0 57 213-269 20-81 (142)
231 PF04184 ST7: ST7 protein; In 97.1 0.089 1.9E-06 44.5 16.2 142 32-194 174-322 (539)
232 COG3118 Thioredoxin domain-con 97.1 0.096 2.1E-06 41.2 15.3 141 141-283 143-286 (304)
233 PF10300 DUF3808: Protein of u 97.1 0.18 3.8E-06 43.7 19.9 162 134-298 190-376 (468)
234 KOG1941 Acetylcholine receptor 97.0 0.087 1.9E-06 42.7 15.2 217 79-295 19-272 (518)
235 PF04840 Vps16_C: Vps16, C-ter 97.0 0.13 2.8E-06 41.9 24.5 86 204-295 178-263 (319)
236 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0074 1.6E-07 50.4 9.7 62 165-229 73-138 (453)
237 KOG2610 Uncharacterized conser 97.0 0.044 9.5E-07 43.8 12.9 159 144-305 115-283 (491)
238 COG3118 Thioredoxin domain-con 96.9 0.14 3.1E-06 40.3 15.7 119 177-298 144-265 (304)
239 COG1729 Uncharacterized protei 96.9 0.032 7E-07 43.3 11.4 103 168-271 143-251 (262)
240 PF13512 TPR_18: Tetratricopep 96.8 0.07 1.5E-06 37.3 11.7 56 141-196 19-76 (142)
241 PRK11906 transcriptional regul 96.7 0.049 1.1E-06 45.8 12.0 117 182-298 273-401 (458)
242 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.12 2.7E-06 43.1 14.0 130 168-298 398-531 (660)
243 COG4649 Uncharacterized protei 96.7 0.06 1.3E-06 38.8 10.6 136 25-165 58-200 (221)
244 PF04053 Coatomer_WDAD: Coatom 96.6 0.28 6.1E-06 42.0 16.3 104 109-230 326-429 (443)
245 smart00299 CLH Clathrin heavy 96.6 0.14 3E-06 36.2 15.4 127 135-281 10-137 (140)
246 KOG2610 Uncharacterized conser 96.6 0.044 9.6E-07 43.8 10.4 117 177-295 113-235 (491)
247 KOG3941 Intermediate in Toll s 96.6 0.028 6E-07 43.8 8.8 98 121-219 54-174 (406)
248 KOG0543 FKBP-type peptidyl-pro 96.5 0.067 1.4E-06 43.9 11.4 88 107-195 214-319 (397)
249 KOG4555 TPR repeat-containing 96.5 0.035 7.5E-07 37.9 8.2 90 176-268 52-148 (175)
250 KOG1941 Acetylcholine receptor 96.5 0.19 4.1E-06 40.9 13.4 166 27-194 84-273 (518)
251 PF09205 DUF1955: Domain of un 96.5 0.16 3.4E-06 34.9 13.9 65 134-200 88-152 (161)
252 PF09205 DUF1955: Domain of un 96.5 0.16 3.4E-06 34.9 14.7 141 142-301 12-152 (161)
253 COG3629 DnrI DNA-binding trans 96.3 0.023 4.9E-07 44.8 7.6 58 205-262 155-214 (280)
254 PF04053 Coatomer_WDAD: Coatom 96.3 0.27 5.8E-06 42.1 14.4 155 109-293 269-426 (443)
255 KOG1585 Protein required for f 96.3 0.33 7.2E-06 37.3 15.5 50 241-291 196-249 (308)
256 KOG2114 Vacuolar assembly/sort 96.2 0.72 1.6E-05 41.8 16.5 172 3-194 342-517 (933)
257 KOG4555 TPR repeat-containing 96.2 0.17 3.7E-06 34.7 9.9 50 5-54 53-105 (175)
258 PF04184 ST7: ST7 protein; In 96.2 0.69 1.5E-05 39.5 16.2 98 171-268 263-379 (539)
259 KOG2041 WD40 repeat protein [G 96.1 0.95 2.1E-05 40.4 22.2 193 12-230 680-905 (1189)
260 KOG2280 Vacuolar assembly/sort 96.1 0.98 2.1E-05 40.4 23.5 280 1-295 443-770 (829)
261 PF00515 TPR_1: Tetratricopept 96.1 0.012 2.7E-07 29.8 3.5 31 237-267 3-33 (34)
262 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.77 1.7E-05 38.7 18.6 135 130-268 395-535 (660)
263 KOG4234 TPR repeat-containing 96.0 0.075 1.6E-06 39.3 8.3 104 175-278 103-211 (271)
264 KOG3941 Intermediate in Toll s 96.0 0.098 2.1E-06 40.9 9.2 98 15-116 54-173 (406)
265 PF08631 SPO22: Meiosis protei 96.0 0.64 1.4E-05 37.3 23.0 63 133-196 85-150 (278)
266 PF07719 TPR_2: Tetratricopept 95.9 0.021 4.5E-07 28.8 3.8 30 238-267 4-33 (34)
267 COG0457 NrfG FOG: TPR repeat [ 95.8 0.58 1.3E-05 35.6 22.3 216 82-299 39-266 (291)
268 KOG1920 IkappaB kinase complex 95.8 1.8 3.9E-05 41.1 19.0 82 170-261 942-1025(1265)
269 COG4785 NlpI Lipoprotein NlpI, 95.7 0.64 1.4E-05 35.1 14.3 163 131-300 98-268 (297)
270 PRK11619 lytic murein transgly 95.7 1.6 3.4E-05 39.6 25.4 49 247-295 324-372 (644)
271 PF13428 TPR_14: Tetratricopep 95.7 0.04 8.7E-07 29.9 4.6 35 27-65 2-36 (44)
272 PRK11906 transcriptional regul 95.7 1.2 2.5E-05 37.9 14.9 144 147-293 273-431 (458)
273 COG4105 ComL DNA uptake lipopr 95.6 0.83 1.8E-05 35.5 19.9 55 175-229 175-230 (254)
274 PF13176 TPR_7: Tetratricopept 95.5 0.037 7.9E-07 28.5 3.7 26 28-53 1-26 (36)
275 PF00515 TPR_1: Tetratricopept 95.4 0.039 8.4E-07 27.9 3.7 32 27-62 2-33 (34)
276 PF10602 RPN7: 26S proteasome 95.4 0.46 9.9E-06 35.1 10.6 95 133-229 37-139 (177)
277 PF02259 FAT: FAT domain; Int 95.4 1.4 2.9E-05 36.7 16.9 148 131-281 145-304 (352)
278 PF13176 TPR_7: Tetratricopept 95.3 0.04 8.8E-07 28.4 3.7 26 271-296 1-26 (36)
279 PF13170 DUF4003: Protein of u 95.3 1.3 2.8E-05 35.8 16.1 127 82-211 78-225 (297)
280 KOG1586 Protein required for f 95.2 1 2.2E-05 34.5 16.1 126 143-268 84-228 (288)
281 PF07719 TPR_2: Tetratricopept 95.0 0.063 1.4E-06 26.9 3.7 28 27-54 2-29 (34)
282 KOG4648 Uncharacterized conser 94.8 0.16 3.5E-06 40.9 7.0 96 173-271 103-201 (536)
283 COG3629 DnrI DNA-binding trans 94.8 0.44 9.6E-06 37.7 9.4 81 131-212 152-236 (280)
284 PF13181 TPR_8: Tetratricopept 94.7 0.07 1.5E-06 26.8 3.5 30 237-266 3-32 (34)
285 PF02284 COX5A: Cytochrome c o 94.7 0.26 5.6E-06 32.1 6.6 62 148-211 26-87 (108)
286 KOG4648 Uncharacterized conser 94.7 0.13 2.8E-06 41.5 6.3 94 138-235 103-198 (536)
287 KOG1920 IkappaB kinase complex 94.5 4.7 0.0001 38.5 19.8 114 133-262 940-1053(1265)
288 TIGR02561 HrpB1_HrpK type III 94.5 0.19 4.1E-06 35.4 6.0 71 214-284 21-93 (153)
289 PF10602 RPN7: 26S proteasome 94.5 1.4 3.1E-05 32.5 13.1 96 102-197 37-143 (177)
290 PF09613 HrpB1_HrpK: Bacterial 94.4 1.3 2.8E-05 31.8 12.5 86 178-266 21-108 (160)
291 PF02259 FAT: FAT domain; Int 94.3 2.6 5.7E-05 34.9 15.0 67 233-299 144-214 (352)
292 PF09613 HrpB1_HrpK: Bacterial 94.3 0.29 6.3E-06 35.0 6.8 96 205-301 9-109 (160)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 0.45 9.7E-06 30.7 6.8 63 147-211 22-84 (103)
294 COG2976 Uncharacterized protei 94.2 1.7 3.6E-05 32.4 13.1 130 134-268 56-192 (207)
295 PF00637 Clathrin: Region in C 94.2 0.055 1.2E-06 38.4 3.3 128 138-284 13-140 (143)
296 PRK09687 putative lyase; Provi 94.2 2.4 5.2E-05 34.1 24.8 245 15-280 26-278 (280)
297 PF13170 DUF4003: Protein of u 94.2 2.5 5.4E-05 34.2 14.0 155 42-200 78-254 (297)
298 KOG1258 mRNA processing protei 94.2 3.6 7.8E-05 36.1 20.7 180 99-283 295-489 (577)
299 PF06552 TOM20_plant: Plant sp 94.2 0.77 1.7E-05 33.6 8.8 44 251-301 96-139 (186)
300 PF13431 TPR_17: Tetratricopep 94.2 0.06 1.3E-06 27.3 2.4 24 98-121 10-33 (34)
301 PF07035 Mic1: Colon cancer-as 94.1 1.6 3.5E-05 31.7 14.6 133 152-297 14-148 (167)
302 PRK15180 Vi polysaccharide bio 94.0 1 2.2E-05 38.3 10.4 124 179-304 301-426 (831)
303 PF04097 Nic96: Nup93/Nic96; 94.0 2.8 6.1E-05 37.9 14.0 224 4-233 267-535 (613)
304 smart00299 CLH Clathrin heavy 93.9 1.5 3.4E-05 30.8 14.7 41 31-74 12-52 (140)
305 KOG1585 Protein required for f 93.9 2.4 5.2E-05 32.8 17.0 206 26-259 31-251 (308)
306 COG3947 Response regulator con 93.8 2.8 6E-05 33.4 14.2 164 131-296 121-340 (361)
307 PF13374 TPR_10: Tetratricopep 93.7 0.15 3.3E-06 26.9 3.7 25 238-262 5-29 (42)
308 KOG4234 TPR repeat-containing 93.6 1.4 3.1E-05 32.9 9.4 94 138-235 101-201 (271)
309 PF13174 TPR_6: Tetratricopept 93.6 0.15 3.2E-06 25.3 3.4 23 244-266 9-31 (33)
310 PF13174 TPR_6: Tetratricopept 93.4 0.22 4.7E-06 24.6 3.8 30 271-300 2-31 (33)
311 PF11207 DUF2989: Protein of u 93.2 1 2.2E-05 33.6 8.3 74 149-223 123-198 (203)
312 COG4649 Uncharacterized protei 93.2 2.4 5.2E-05 30.9 14.6 121 142-263 68-195 (221)
313 PF13181 TPR_8: Tetratricopept 93.0 0.17 3.6E-06 25.4 3.0 28 27-54 2-29 (34)
314 KOG0276 Vesicle coat complex C 93.0 2.3 5.1E-05 37.3 11.1 107 109-233 645-751 (794)
315 KOG1464 COP9 signalosome, subu 93.0 3.7 7.9E-05 32.3 17.6 247 7-263 39-331 (440)
316 KOG4642 Chaperone-dependent E3 92.9 0.57 1.2E-05 35.9 6.6 83 177-262 20-105 (284)
317 KOG2114 Vacuolar assembly/sort 92.7 8.2 0.00018 35.5 18.1 177 30-231 338-518 (933)
318 KOG4570 Uncharacterized conser 92.6 3.4 7.3E-05 33.3 10.6 47 182-229 115-161 (418)
319 KOG0276 Vesicle coat complex C 92.5 4.1 8.8E-05 35.9 11.8 97 143-261 648-747 (794)
320 KOG1464 COP9 signalosome, subu 92.4 4.4 9.6E-05 31.9 17.3 49 79-127 40-91 (440)
321 TIGR02561 HrpB1_HrpK type III 92.3 1.3 2.7E-05 31.4 7.3 75 168-247 8-89 (153)
322 PF13374 TPR_10: Tetratricopep 92.2 0.38 8.2E-06 25.3 3.9 29 26-54 2-30 (42)
323 COG5159 RPN6 26S proteasome re 91.9 2.9 6.3E-05 33.1 9.5 23 274-296 130-152 (421)
324 PF14853 Fis1_TPR_C: Fis1 C-te 91.5 0.46 9.9E-06 27.0 3.7 32 240-271 6-37 (53)
325 PF06552 TOM20_plant: Plant sp 91.2 1.2 2.5E-05 32.7 6.4 49 250-298 50-109 (186)
326 COG2976 Uncharacterized protei 91.2 5 0.00011 30.0 15.0 88 107-196 95-188 (207)
327 COG1747 Uncharacterized N-term 91.1 9.6 0.00021 33.1 21.4 175 99-280 64-250 (711)
328 PF11207 DUF2989: Protein of u 91.1 1.8 4E-05 32.4 7.5 44 245-288 150-197 (203)
329 PF00637 Clathrin: Region in C 90.9 0.1 2.2E-06 37.0 0.9 85 173-262 13-97 (143)
330 KOG4570 Uncharacterized conser 90.8 1.5 3.3E-05 35.2 7.2 100 96-196 59-164 (418)
331 COG4455 ImpE Protein of avirul 90.7 1 2.2E-05 34.1 5.8 74 205-278 3-81 (273)
332 PRK10941 hypothetical protein; 90.6 1.7 3.8E-05 34.5 7.5 63 239-301 185-247 (269)
333 smart00028 TPR Tetratricopepti 90.6 0.6 1.3E-05 22.2 3.6 24 272-295 4-27 (34)
334 PF07721 TPR_4: Tetratricopept 90.6 0.37 7.9E-06 22.6 2.4 23 271-293 3-25 (26)
335 TIGR02508 type_III_yscG type I 90.1 1.6 3.4E-05 28.5 5.5 84 10-105 20-106 (115)
336 TIGR02508 type_III_yscG type I 89.7 4.1 8.9E-05 26.6 9.4 86 81-170 20-105 (115)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 89.3 3.7 8E-05 26.6 6.7 44 185-229 25-68 (103)
338 TIGR03504 FimV_Cterm FimV C-te 89.2 1.3 2.7E-05 24.0 4.0 24 138-161 5-28 (44)
339 COG1747 Uncharacterized N-term 89.0 15 0.00032 32.1 18.1 174 25-212 65-248 (711)
340 PF07035 Mic1: Colon cancer-as 89.0 7.2 0.00016 28.5 14.4 23 24-46 27-49 (167)
341 PF14561 TPR_20: Tetratricopep 88.9 2.2 4.7E-05 27.5 5.7 51 234-284 21-73 (90)
342 TIGR03504 FimV_Cterm FimV C-te 88.6 0.76 1.7E-05 24.9 2.9 26 274-299 4-29 (44)
343 PF02284 COX5A: Cytochrome c o 88.3 5.4 0.00012 26.2 7.8 44 185-229 28-71 (108)
344 COG4455 ImpE Protein of avirul 88.3 4.3 9.4E-05 30.9 7.5 74 169-244 3-81 (273)
345 PF10345 Cohesin_load: Cohesin 88.2 20 0.00043 32.6 16.7 189 61-262 28-252 (608)
346 PF10579 Rapsyn_N: Rapsyn N-te 88.1 2 4.3E-05 26.6 4.8 46 247-292 18-66 (80)
347 COG2909 MalT ATP-dependent tra 88.0 23 0.0005 33.1 22.9 189 111-303 425-652 (894)
348 smart00028 TPR Tetratricopepti 87.8 1.2 2.7E-05 21.0 3.5 28 27-54 2-29 (34)
349 smart00386 HAT HAT (Half-A-TPR 87.8 1.7 3.7E-05 21.0 4.0 30 249-278 1-30 (33)
350 PRK12798 chemotaxis protein; R 87.4 17 0.00036 30.8 19.3 186 113-300 124-326 (421)
351 PF13929 mRNA_stabil: mRNA sta 87.4 13 0.00029 29.7 11.0 113 148-260 144-263 (292)
352 KOG1308 Hsp70-interacting prot 87.3 0.35 7.7E-06 39.0 1.6 118 177-297 124-243 (377)
353 PF07163 Pex26: Pex26 protein; 87.0 11 0.00025 29.9 9.4 83 108-190 90-181 (309)
354 KOG1586 Protein required for f 86.9 13 0.00027 28.9 15.6 93 103-196 76-183 (288)
355 PF10579 Rapsyn_N: Rapsyn N-te 86.8 1.9 4.1E-05 26.7 4.2 47 179-225 18-65 (80)
356 PRK15180 Vi polysaccharide bio 86.7 7.9 0.00017 33.3 9.0 122 143-268 300-424 (831)
357 PF04190 DUF410: Protein of un 86.7 14 0.00031 29.3 14.9 81 202-298 89-170 (260)
358 KOG0545 Aryl-hydrocarbon recep 86.6 4.7 0.0001 31.3 7.0 54 215-268 242-297 (329)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 86.4 8.7 0.00019 26.5 8.2 43 252-294 80-124 (126)
360 KOG3807 Predicted membrane pro 86.3 17 0.00037 29.8 11.6 58 172-229 280-337 (556)
361 KOG4077 Cytochrome c oxidase, 86.0 6 0.00013 27.1 6.5 71 150-231 67-137 (149)
362 KOG4507 Uncharacterized conser 85.7 7 0.00015 34.5 8.4 115 184-300 590-707 (886)
363 KOG2396 HAT (Half-A-TPR) repea 85.6 23 0.00051 30.7 23.4 246 43-297 299-558 (568)
364 KOG1550 Extracellular protein 85.2 28 0.00061 31.3 15.7 148 42-196 228-393 (552)
365 PF09986 DUF2225: Uncharacteri 85.1 6.8 0.00015 30.0 7.5 30 271-300 167-196 (214)
366 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 5.3 0.00011 22.7 5.2 38 30-71 5-42 (53)
367 KOG4642 Chaperone-dependent E3 84.6 17 0.00037 28.3 10.1 116 5-126 20-142 (284)
368 KOG0890 Protein kinase of the 84.5 58 0.0013 34.4 21.4 64 236-301 1671-1734(2382)
369 PF04910 Tcf25: Transcriptiona 84.2 24 0.00051 29.7 13.1 121 171-297 14-167 (360)
370 COG3947 Response regulator con 84.2 20 0.00044 28.8 13.7 58 135-193 282-339 (361)
371 KOG4507 Uncharacterized conser 84.1 4.3 9.2E-05 35.7 6.5 97 179-278 619-719 (886)
372 KOG1258 mRNA processing protei 83.7 31 0.00067 30.6 23.1 120 168-289 298-420 (577)
373 COG2909 MalT ATP-dependent tra 83.3 40 0.00088 31.6 24.1 219 35-260 424-684 (894)
374 PF09477 Type_III_YscG: Bacter 83.0 11 0.00024 25.0 9.1 79 81-162 21-99 (116)
375 KOG2066 Vacuolar assembly/sort 82.9 39 0.00085 31.2 22.0 128 2-131 363-535 (846)
376 PF13762 MNE1: Mitochondrial s 82.8 15 0.00032 26.1 10.8 78 103-180 41-128 (145)
377 COG4785 NlpI Lipoprotein NlpI, 82.6 20 0.00043 27.5 15.2 159 26-196 99-266 (297)
378 KOG0376 Serine-threonine phosp 82.4 1.6 3.5E-05 37.1 3.4 95 173-270 10-107 (476)
379 PRK09687 putative lyase; Provi 82.2 25 0.00053 28.4 28.2 219 61-300 35-265 (280)
380 KOG2041 WD40 repeat protein [G 82.2 41 0.00088 30.8 21.8 37 8-49 747-783 (1189)
381 PF11846 DUF3366: Domain of un 81.6 5.1 0.00011 30.1 5.7 29 201-229 142-170 (193)
382 PF09670 Cas_Cas02710: CRISPR- 81.2 33 0.00071 29.1 11.0 52 143-195 142-197 (379)
383 COG0790 FOG: TPR repeat, SEL1 81.1 27 0.00059 28.1 17.7 83 79-164 54-145 (292)
384 PF14689 SPOB_a: Sensor_kinase 81.1 6.9 0.00015 23.1 4.9 45 10-54 5-51 (62)
385 KOG0991 Replication factor C, 80.2 26 0.00056 27.3 11.2 43 123-166 230-272 (333)
386 PF04097 Nic96: Nup93/Nic96; 79.9 48 0.001 30.3 19.0 54 2-55 118-181 (613)
387 PF11846 DUF3366: Domain of un 79.8 7.6 0.00016 29.1 6.1 38 230-267 139-176 (193)
388 PF14689 SPOB_a: Sensor_kinase 78.0 12 0.00025 22.1 5.2 23 137-159 28-50 (62)
389 PF10366 Vps39_1: Vacuolar sor 77.9 18 0.00039 24.2 7.4 27 134-160 41-67 (108)
390 PF12862 Apc5: Anaphase-promot 77.8 8.1 0.00018 25.0 5.0 53 245-297 8-69 (94)
391 KOG0545 Aryl-hydrocarbon recep 77.6 32 0.0007 27.0 10.2 88 107-195 184-292 (329)
392 PF12862 Apc5: Anaphase-promot 77.5 16 0.00036 23.5 6.5 51 214-264 9-70 (94)
393 PF10255 Paf67: RNA polymerase 77.3 45 0.00097 28.5 10.2 56 207-262 126-191 (404)
394 PF10345 Cohesin_load: Cohesin 77.1 59 0.0013 29.7 23.9 123 3-127 108-251 (608)
395 PF00244 14-3-3: 14-3-3 protei 76.9 33 0.00073 26.8 12.9 60 31-94 6-65 (236)
396 KOG2066 Vacuolar assembly/sort 76.6 64 0.0014 29.9 22.3 26 134-159 507-532 (846)
397 KOG2908 26S proteasome regulat 76.5 42 0.0009 27.7 10.0 80 106-185 80-175 (380)
398 KOG3364 Membrane protein invol 76.4 16 0.00034 25.6 6.0 71 200-270 29-106 (149)
399 PF09477 Type_III_YscG: Bacter 76.3 17 0.00036 24.2 5.9 85 9-105 20-107 (116)
400 KOG4077 Cytochrome c oxidase, 75.9 21 0.00046 24.6 6.4 47 230-276 79-125 (149)
401 PRK10941 hypothetical protein; 75.7 39 0.00086 27.0 10.0 75 136-211 185-259 (269)
402 cd08819 CARD_MDA5_2 Caspase ac 75.4 18 0.0004 23.0 6.5 66 85-152 21-86 (88)
403 PF10255 Paf67: RNA polymerase 74.7 25 0.00055 29.9 8.1 25 169-193 166-190 (404)
404 KOG0551 Hsp90 co-chaperone CNS 74.6 20 0.00044 29.4 7.1 97 168-264 82-182 (390)
405 KOG4279 Serine/threonine prote 74.3 55 0.0012 30.3 10.2 183 83-268 180-399 (1226)
406 PRK10564 maltose regulon perip 73.7 7.4 0.00016 31.3 4.6 40 25-66 255-295 (303)
407 PRK10564 maltose regulon perip 73.1 9.9 0.00021 30.6 5.1 41 133-173 258-298 (303)
408 PRK11619 lytic murein transgly 73.0 78 0.0017 29.2 26.6 122 72-195 248-374 (644)
409 cd00280 TRFH Telomeric Repeat 72.6 25 0.00054 26.1 6.6 35 210-244 118-152 (200)
410 PF07163 Pex26: Pex26 protein; 72.5 48 0.001 26.6 9.0 91 138-229 89-184 (309)
411 COG4976 Predicted methyltransf 71.4 10 0.00022 29.3 4.5 58 213-270 5-64 (287)
412 KOG3824 Huntingtin interacting 71.3 12 0.00026 30.3 5.1 58 215-272 128-187 (472)
413 smart00777 Mad3_BUB1_I Mad3/BU 71.2 31 0.00068 23.8 7.2 42 252-293 80-123 (125)
414 PF14863 Alkyl_sulf_dimr: Alky 71.1 29 0.00062 24.6 6.6 65 219-286 57-121 (141)
415 PF11817 Foie-gras_1: Foie gra 70.4 20 0.00044 28.2 6.4 20 32-51 16-35 (247)
416 PF13934 ELYS: Nuclear pore co 70.2 49 0.0011 25.7 15.6 21 209-229 114-134 (226)
417 KOG4814 Uncharacterized conser 69.6 28 0.00061 31.4 7.4 86 213-298 364-457 (872)
418 PF11848 DUF3368: Domain of un 69.4 17 0.00037 20.1 4.9 33 143-175 13-45 (48)
419 PF11663 Toxin_YhaV: Toxin wit 69.3 4.4 9.6E-05 28.1 2.2 31 144-176 107-137 (140)
420 KOG2063 Vacuolar assembly/sort 68.9 1.1E+02 0.0024 29.2 13.4 163 134-297 506-712 (877)
421 PF15469 Sec5: Exocyst complex 68.6 46 0.00099 24.7 10.1 140 146-310 40-180 (182)
422 KOG2396 HAT (Half-A-TPR) repea 68.3 84 0.0018 27.6 17.3 101 164-267 456-563 (568)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 68.1 37 0.0008 23.5 8.1 45 82-126 79-124 (126)
424 PF10366 Vps39_1: Vacuolar sor 68.0 25 0.00055 23.5 5.6 26 238-263 42-67 (108)
425 PF08424 NRDE-2: NRDE-2, neces 67.8 69 0.0015 26.4 16.4 23 278-300 163-185 (321)
426 PF11817 Foie-gras_1: Foie gra 67.4 59 0.0013 25.6 8.6 20 2-21 17-36 (247)
427 cd08819 CARD_MDA5_2 Caspase ac 66.1 32 0.00069 22.0 7.2 67 151-224 21-87 (88)
428 KOG0376 Serine-threonine phosp 65.9 16 0.00035 31.4 5.2 105 138-247 10-117 (476)
429 PHA02875 ankyrin repeat protei 65.7 74 0.0016 27.2 9.5 194 46-260 15-224 (413)
430 KOG0687 26S proteasome regulat 65.6 76 0.0016 26.2 12.0 129 131-263 69-209 (393)
431 PRK13184 pknD serine/threonine 65.6 1.4E+02 0.0029 29.1 20.8 124 172-297 693-832 (932)
432 PF11663 Toxin_YhaV: Toxin wit 65.6 5.9 0.00013 27.5 2.2 35 176-213 104-138 (140)
433 COG0735 Fur Fe2+/Zn2+ uptake r 65.4 40 0.00086 24.0 6.5 42 138-179 26-67 (145)
434 KOG2063 Vacuolar assembly/sort 65.0 1.3E+02 0.0029 28.7 15.0 27 28-54 506-532 (877)
435 KOG0686 COP9 signalosome, subu 64.8 89 0.0019 26.6 11.6 170 3-175 158-352 (466)
436 KOG1308 Hsp70-interacting prot 64.4 13 0.00028 30.5 4.2 116 143-262 125-242 (377)
437 KOG2034 Vacuolar sorting prote 63.7 1.4E+02 0.003 28.4 15.3 168 109-294 366-555 (911)
438 COG5159 RPN6 26S proteasome re 63.1 80 0.0017 25.5 15.1 36 30-67 7-42 (421)
439 PF11123 DNA_Packaging_2: DNA 62.9 33 0.00071 21.0 5.1 49 250-298 12-74 (82)
440 COG4976 Predicted methyltransf 62.1 22 0.00048 27.5 4.8 58 176-236 4-63 (287)
441 COG5108 RPO41 Mitochondrial DN 61.5 61 0.0013 29.6 7.9 47 137-183 33-81 (1117)
442 PRK14956 DNA polymerase III su 61.1 1.2E+02 0.0025 26.8 10.0 41 236-276 249-289 (484)
443 PF09454 Vps23_core: Vps23 cor 60.6 34 0.00073 20.4 4.9 52 232-283 5-56 (65)
444 KOG2471 TPR repeat-containing 60.0 39 0.00085 29.5 6.3 104 109-215 248-381 (696)
445 KOG0508 Ankyrin repeat protein 59.7 26 0.00055 30.2 5.2 147 37-191 50-204 (615)
446 KOG2659 LisH motif-containing 59.1 82 0.0018 24.4 10.3 20 210-229 71-90 (228)
447 KOG0991 Replication factor C, 58.8 87 0.0019 24.6 14.2 85 142-229 169-264 (333)
448 PF02184 HAT: HAT (Half-A-TPR) 58.7 14 0.0003 18.4 2.2 23 41-67 2-24 (32)
449 PF04034 DUF367: Domain of unk 58.2 59 0.0013 22.5 6.7 54 205-258 68-122 (127)
450 PF13762 MNE1: Mitochondrial s 57.9 66 0.0014 22.9 9.3 83 133-216 40-128 (145)
451 KOG4521 Nuclear pore complex, 57.7 2E+02 0.0044 28.5 13.5 151 141-291 929-1124(1480)
452 PF15297 CKAP2_C: Cytoskeleton 57.7 36 0.00079 28.1 5.6 63 218-280 118-186 (353)
453 KOG1498 26S proteasome regulat 57.6 1.2E+02 0.0026 25.8 14.6 86 137-229 136-238 (439)
454 PF13934 ELYS: Nuclear pore co 57.5 89 0.0019 24.3 15.7 104 136-248 80-185 (226)
455 COG5191 Uncharacterized conser 57.4 33 0.00071 28.0 5.2 75 202-276 106-183 (435)
456 smart00777 Mad3_BUB1_I Mad3/BU 57.1 62 0.0014 22.4 7.9 43 83-125 80-123 (125)
457 PF11768 DUF3312: Protein of u 56.9 1.2E+02 0.0025 27.1 8.8 92 206-297 411-522 (545)
458 KOG1114 Tripeptidyl peptidase 56.6 1.9E+02 0.0042 27.9 14.9 70 151-220 1215-1284(1304)
459 KOG4567 GTPase-activating prot 56.2 1.1E+02 0.0024 25.0 9.6 41 188-229 264-304 (370)
460 COG5108 RPO41 Mitochondrial DN 56.2 1.2E+02 0.0026 27.8 8.8 92 172-263 33-131 (1117)
461 KOG0687 26S proteasome regulat 55.8 1.2E+02 0.0025 25.1 16.0 132 59-197 66-211 (393)
462 PF07840 FadR_C: FadR C-termin 55.7 24 0.00053 25.6 4.0 25 39-67 47-71 (164)
463 COG5187 RPN7 26S proteasome re 55.4 1.1E+02 0.0024 24.8 12.6 99 96-196 110-221 (412)
464 PF00244 14-3-3: 14-3-3 protei 55.3 1E+02 0.0022 24.2 12.1 57 138-194 7-64 (236)
465 COG5187 RPN7 26S proteasome re 55.2 1.1E+02 0.0025 24.8 11.6 30 166-195 114-143 (412)
466 PF02607 B12-binding_2: B12 bi 54.9 29 0.00064 21.3 4.0 36 79-114 14-49 (79)
467 PF10475 DUF2450: Protein of u 54.7 1.2E+02 0.0025 24.7 11.6 113 106-229 103-223 (291)
468 PF02847 MA3: MA3 domain; Int 54.6 61 0.0013 21.5 8.0 61 105-165 6-70 (113)
469 KOG0403 Neoplastic transformat 54.4 1.1E+02 0.0025 26.4 8.0 74 105-182 513-589 (645)
470 PRK11639 zinc uptake transcrip 54.1 59 0.0013 23.9 5.9 15 181-195 39-53 (169)
471 PF09454 Vps23_core: Vps23 cor 53.8 46 0.001 19.9 4.9 49 129-178 5-53 (65)
472 PF09986 DUF2225: Uncharacteri 53.3 1E+02 0.0022 23.7 10.2 62 135-196 121-194 (214)
473 PF12968 DUF3856: Domain of Un 53.0 73 0.0016 21.9 6.8 65 234-298 54-129 (144)
474 KOG1839 Uncharacterized protei 53.0 2.5E+02 0.0054 28.1 13.3 95 100-194 972-1084(1236)
475 KOG2422 Uncharacterized conser 52.6 1.8E+02 0.0039 26.3 13.2 135 3-141 292-459 (665)
476 PF04190 DUF410: Protein of un 52.6 1.2E+02 0.0026 24.2 19.0 81 100-195 89-169 (260)
477 PF10475 DUF2450: Protein of u 52.6 1.3E+02 0.0027 24.5 10.9 22 131-152 196-217 (291)
478 cd07153 Fur_like Ferric uptake 52.2 38 0.00082 22.7 4.5 46 138-183 6-51 (116)
479 COG2912 Uncharacterized conser 51.7 60 0.0013 25.9 5.8 55 244-298 190-244 (269)
480 KOG1839 Uncharacterized protei 51.2 2.7E+02 0.0058 27.9 11.9 154 140-293 940-1123(1236)
481 COG0735 Fur Fe2+/Zn2+ uptake r 51.0 88 0.0019 22.3 6.6 63 153-217 7-69 (145)
482 PF07720 TPR_3: Tetratricopept 50.7 34 0.00074 17.5 3.9 14 244-257 10-23 (36)
483 cd08326 CARD_CASP9 Caspase act 50.2 64 0.0014 20.4 6.0 39 113-151 42-80 (84)
484 PF14929 TAF1_subA: TAF RNA Po 50.2 1.9E+02 0.0042 26.0 13.8 96 116-211 359-463 (547)
485 KOG2471 TPR repeat-containing 49.8 1.8E+02 0.004 25.7 12.7 65 244-308 249-329 (696)
486 KOG1498 26S proteasome regulat 49.8 1.6E+02 0.0035 25.0 15.5 93 207-303 135-246 (439)
487 PF11768 DUF3312: Protein of u 49.7 1.9E+02 0.0042 25.8 10.0 20 2-21 415-434 (545)
488 PF08314 Sec39: Secretory path 49.4 2.3E+02 0.005 26.6 11.6 88 27-117 433-529 (715)
489 PF05053 Menin: Menin; InterP 48.0 2.1E+02 0.0046 25.8 9.9 83 204-288 319-426 (618)
490 COG0790 FOG: TPR repeat, SEL1 47.9 1.5E+02 0.0031 23.9 19.2 19 81-99 128-146 (292)
491 TIGR01503 MthylAspMut_E methyl 47.5 99 0.0021 26.9 6.8 49 250-300 69-117 (480)
492 KOG2422 Uncharacterized conser 47.2 2.2E+02 0.0047 25.7 14.0 13 271-283 485-497 (665)
493 TIGR01914 cas_Csa4 CRISPR-asso 47.2 1.4E+02 0.0031 24.6 7.3 55 120-175 295-349 (354)
494 smart00638 LPD_N Lipoprotein N 47.1 2.2E+02 0.0048 25.8 19.3 211 83-295 292-522 (574)
495 KOG1550 Extracellular protein 46.8 2.2E+02 0.0048 25.7 23.8 274 11-299 228-539 (552)
496 PRK09857 putative transposase; 46.7 1.6E+02 0.0034 24.0 9.2 64 239-302 210-273 (292)
497 PF05476 PET122: PET122; Inte 46.7 1.5E+02 0.0032 23.5 17.7 51 6-56 21-73 (267)
498 PF02607 B12-binding_2: B12 bi 46.7 61 0.0013 19.8 4.5 39 144-182 13-51 (79)
499 smart00804 TAP_C C-terminal do 46.5 19 0.00041 21.4 1.9 24 39-63 38-61 (63)
500 cd08326 CARD_CASP9 Caspase act 46.2 65 0.0014 20.4 4.4 41 16-56 20-60 (84)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-56 Score=396.09 Aligned_cols=306 Identities=34% Similarity=0.603 Sum_probs=298.0
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|++++|.++|+.|.++|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|+. .|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd~~t~~~ll~a~~~---~g 339 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSIDQFTFSIMIRIFSR---LA 339 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHh---cc
Confidence 57899999999999999999999999999999999999999999999999999999 99999999999998876 55
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
++++|.+++..|.+.|++||..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~ 499 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIEA 311 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 311 (311)
|+.+|...|+++.|..+++++.+..|++..+|..|+..|.+.|+|++|.+++++|.+.|+.++|++||+++
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 99999999999999999999999999988899999999999999999999999999999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.4e-52 Score=375.53 Aligned_cols=304 Identities=40% Similarity=0.734 Sum_probs=294.5
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. + ++||..||+.++.+|+.. |
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~--~~pd~~t~~~lL~a~~~~---g 503 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T--LKPNSVTLIAALSACARI---G 503 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--CCCCHhHHHHHHHHHhhh---c
Confidence 578999999999999999999999999999999999999999999999999985 4 899999999999998875 4
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+++ .+|..+|+++|.+|++.|+.++|.++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999996669999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIEA 311 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 311 (311)
|+.+|...|+.+.++...+++.++.|++...|..|...|...|+|++|.++.+.|++.|++++||+|||+|
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-50 Score=362.35 Aligned_cols=298 Identities=19% Similarity=0.285 Sum_probs=206.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhc----cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENML----KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||++|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|..
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k- 554 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQ- 554 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH-
Confidence 3566667777777777777663 4566677777777777777777777777776666 66777777777765554
Q ss_pred hhcCcchhHHHHHHHHhh--ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc----cchHhhHHHHHHHHHcCCCHHH
Q 040965 77 VNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV----IKDVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|.+++++|.+ .|+.||..+|++++.+|++.|++++|.++|++|. .|+..+|+.+|.+|++.|++++
T Consensus 555 --~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 555 --SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred --CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 4446777777777754 4566677777777777777777777777777663 3455677777777777777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.|+..+|+.||.+|++.|++++|.++|++|
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777665 67777777777777777777777777777766
Q ss_pred --CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 --PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.||..+|+.||.+|++.|++++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.+++++|.+.|+.|+.
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 566777777777777777777777777777776533 223347777777777777777777777777777776664
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-50 Score=360.74 Aligned_cols=298 Identities=19% Similarity=0.286 Sum_probs=273.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhc----cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENML----KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||.+|++.|+++.|..+|+.|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|+.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTynaLI~gy~k- 519 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTFGALIDGCAR- 519 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH-
Confidence 4788999999999999999994 5789999999999999999999999999999988 89999999999987765
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc------cchHhhHHHHHHHHHcCCCHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV------IKDVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++
T Consensus 520 --~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 --AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred --CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 66699999999999999999999999999999999999999999999983 5789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+. |+.||..+|+.++++|++.|++++|.+++++|
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred --CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 --PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.||..+|+.|+.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 788999999999999999999999999999998643 234569999999999999999999999999999998875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=354.02 Aligned_cols=297 Identities=26% Similarity=0.403 Sum_probs=283.0
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|+++.|.++|++|..||..+||+++.+|++.|++++|+++|++|.+.| ..|+..+|+.++.+|... |
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~---~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGL---G 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcC---C
Confidence 57899999999999999999999999999999999999999999999999999998 999999999999988764 5
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|++|..+|..+|+++|.+|++.|++++|.++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|++.|+++.|.+++..|.+. |+.||..+|+.|+++|++.|++++|.++|++|. .||..+|++
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999996 689999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHH-ccCCCCC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE-AGIRKIP 304 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~ 304 (311)
+|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999744 23445999999999999999999999999986 5888775
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-47 Score=346.67 Aligned_cols=298 Identities=26% Similarity=0.416 Sum_probs=283.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|+++.|..+|++|..+|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|.. .|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~---~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACEL---LG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHh---cC
Confidence 57899999999999999999999999999999999999999999999999999999 99999999999998876 55
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~ 460 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTS 460 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999996 689999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCc
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 305 (311)
++.+|.+.|+.++|..+|++|.+..+++..+|..++.+|.+.|..+.+.+++..|.+.|+.++..
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 99999999999999999999987555555699999999999999999999999999888876653
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.9e-25 Score=187.31 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=241.3
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch---HHHHHHHHHhhhhhh
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE---ATYVSVLSSCAGLVN 78 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~ 78 (311)
+...|++++|+..|+++.. | +..++..+...+...|++++|..+++.+...+ ..++. ..+..+...+ ..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~---~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDY---LK 119 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHH---HH
Confidence 4577999999999999953 3 55689999999999999999999999998754 22222 2344444433 33
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch--------HhhHHHHHHHHHcCCCHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD--------VCTWNAMISSLASNSREKE 150 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+...+ ...+..++..+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 778999999999998864 4567889999999999999999999999985432 2245667788899999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......+++.++.+|...|++++|.+.++++
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998763 335667888889999999999999999999864 22222456888999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc---cchhHHHHHHHHHHHHccCCCCCcc
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
...|+...+..++..+.+.|++++|..+++++.+..|++. .+..++..+.. .|+..++..++++|.+.++.|+|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5578887888888999999999999999999999999886 66666666553 5689999999999999999999986
Q ss_pred cc
Q 040965 307 SL 308 (311)
Q Consensus 307 ~~ 308 (311)
.+
T Consensus 356 ~c 357 (389)
T PRK11788 356 RC 357 (389)
T ss_pred EC
Confidence 54
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=4.7e-22 Score=183.79 Aligned_cols=287 Identities=13% Similarity=0.061 Sum_probs=207.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+..|.+.|++++|..+++.+.. .+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++. .
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~ 647 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYA---V 647 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH---H
Confidence 4567888999999999988842 367788888999999999999999999887743 223444554544333 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.. .+...+..+...+...|++++|.+.|
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666888888888888764 34567777888888888888888888887733 25566777777788888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EP 233 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p 233 (311)
+++...+ |+..++..++.++.+.|+.++|...++++.+. .+.+...+..+...|...|++++|.+.|+++ .. ++
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8877653 44466666777777788888888887777753 3445666777777777788888888887777 22 33
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+..+...+...|+ ++|...++++.+..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45566666677777777 6677777777777777766777777777777777777777777776654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=6.1e-22 Score=183.06 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=121.7
Q ss_pred hhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.|.+.|++++|...|+.+.. .+...+..+..++.+.|++++|...|+++.+.. +.+...+..+...+. ..|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~~ 683 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLL---AAK 683 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH---HcC
Confidence 34444444444444444421 133344444444444445555554444444321 112233333332211 133
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
++++|.++++.+.+.. +++...+..+...+...|++++|...|+++. .|+..++..++.++.+.|++++|.+.++++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444443 2233344444444444445555544444442 222233444444444444555554444444
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cc
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-AS 236 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 236 (311)
.+.. +.+...+..+...|...|+.++|...|+++.+. .+++..+++.++..+...|+ ++|.++++++ ...|+ ..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 4431 223444444444444444555555544444432 12233344444444444444 4444444444 22222 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444555555555544444444444444444444445555554444444
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2e-20 Score=156.96 Aligned_cols=258 Identities=17% Similarity=0.132 Sum_probs=210.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch---HHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTAL 107 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 107 (311)
....+...|++++|+..|.++.+. .|+. .++..+...+. ..|++++|..+++.+.+.+..++ ..++..+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFR---RRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHH---HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 455567889999999999999984 4544 45555554333 37779999999999988643222 3567889
Q ss_pred HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHcc
Q 040965 108 IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARA 180 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~ 180 (311)
+..|.+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999955 46778999999999999999999999999886533322 2455677788899
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
|++++|...|+++.+. .+.+...+..++..+.+.|++++|.++++++ ...|+ ..++..++.+|...|++++|...
T Consensus 194 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 194 GDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999864 2234567788889999999999999999998 43454 35678888999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
++++.+..|+.. .+..++..+.+.|++++|..+++++.+..
T Consensus 272 l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 272 LRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999875 56889999999999999999999988764
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.2e-20 Score=162.89 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH----HHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL----GLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...|+++++. .+.+...+..+...+.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 344444455555555554444432 1133344444444444554443 44444444432 1112334444445555
Q ss_pred hcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 215 RAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
..|++++|...+++. ...|+. ..+..+...+...|++++|...++++.+..|.+...+..++.++...|++++|...|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555444 223322 233333444445555555555555555544444333333444445555555555555
Q ss_pred HHHHHc
Q 040965 293 KAMVEA 298 (311)
Q Consensus 293 ~~m~~~ 298 (311)
++..+.
T Consensus 376 ~~al~~ 381 (656)
T PRK15174 376 EHYIQA 381 (656)
T ss_pred HHHHHh
Confidence 554443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.6e-19 Score=155.84 Aligned_cols=290 Identities=10% Similarity=-0.022 Sum_probs=234.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.+ ..|+.......+.. .+..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~~~la~--~l~~ 122 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDVLLVAS--VLLK 122 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHHHHHHH--HHHH
Confidence 4457789999999999998843 2566777788888899999999999999998 55665444333321 2334
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cc-hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IK-DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+. .| +...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 788999999999999874 4467788889999999999999999998773 23 33344333 3478899999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH----HHHHHHhC-C
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE----AKEFMRSM-P 230 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~-~ 230 (311)
+.+.+....++......+..++...|++++|...++++... .+.+...+..+...|...|++++ |...|++. .
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99887643345555566677889999999999999999864 23356678889999999999986 79999988 5
Q ss_pred CCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 231 FEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 231 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..|+ ...+..+...+...|++++|...++++.+..|+++..+..++.++.+.|++++|...++++.+.+..
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5665 4677888888999999999999999999999999989999999999999999999999999876543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-20 Score=151.71 Aligned_cols=286 Identities=14% Similarity=0.143 Sum_probs=184.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+.+-..|+++.|+.+++.+++ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+... +...
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s~lgnL--lka~ 197 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARSDLGNL--LKAE 197 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhcchhHH--HHhh
Confidence 566788999999999999854 3 567999999999999999999999999988 667655544332211 1114
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK----------------------------- 130 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------- 130 (311)
|++++|...+.+.++... --...|+.|...+-.+|++..|+..|++.++-
T Consensus 198 Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred cccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 445555555554444321 11234444444444444444444444444222
Q ss_pred --------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc
Q 040965 131 --------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201 (311)
Q Consensus 131 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 201 (311)
....+..+...|-.+|+.+.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.+.+.- .|
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---~p 351 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---CP 351 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---CC
Confidence 3344444555555566666666666666554 443 456777777777777777777777777643 22
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 202 -IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 202 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.....+.|...|...|.+++|..+|... .+.|.- ..++.|...|..+|++++|...|++++++.|.-..+|..++..
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 2345666777777777777777777666 555543 5566677777777777777777777777777777777777777
Q ss_pred HhccchhHHHHHHHHHHHHccC
Q 040965 279 HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|...|+.+.|...+.+.+..+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCc
Confidence 7777777777777776665443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6.8e-18 Score=149.16 Aligned_cols=288 Identities=14% Similarity=0.044 Sum_probs=223.7
Q ss_pred hhhhhcCChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
+.|.+.|++++|+..|++. ..|+...|..+..+|.+.|++++|++.++..++ ..|+. ..+..+-.++.. .
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p~~~~a~~~~a~a~~~---l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE----LDPDYSKALNRRANAYDG---L 207 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHH---c
Confidence 4577889999999999998 456788899999999999999999999999988 45654 445544444333 5
Q ss_pred CcchhHHHHHHHHhhccC-----------------------------CchHHHHHHH-----------------------
Q 040965 80 GGLYLGKQVHGYILRNEI-----------------------------VLSVFMGTAL----------------------- 107 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l----------------------- 107 (311)
|++++|...+......+. +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 668888765543321110 0000000000
Q ss_pred -------HHHH------hhcCCHHHHHHHHHHccc-----c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cH
Q 040965 108 -------IDLY------GKVGCLERAIRVFKSMVI-----K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NE 167 (311)
Q Consensus 108 -------~~~~------~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~ 167 (311)
+... ...+++++|.+.|++... | ....|..+...+...|++++|+..+++..+. .| ..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 0000 122578899999988853 2 4567888888999999999999999998876 44 46
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 245 (311)
..|..+...+...|++++|...|+++++. .+.+..+|..+...+...|++++|.+.|++. ...|+ ...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 68888888999999999999999999864 2334678889999999999999999999998 55564 46677777889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+.|++++|...++++++..|+++..+..++.++...|++++|.+.|++..+....
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999998876543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=3.2e-19 Score=146.77 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHhcc--cc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcch
Q 040965 8 NGDMDSAILLFENMLK--RD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~ 83 (311)
.|++.+|...+.+.+. |. ..+|+.|...+-..|+.-.|++.|++..+ +.|+- ..|..|-..+.. .+.++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke---~~~~d 269 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKE---ARIFD 269 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHH---Hhcch
Confidence 3444444444444422 21 23566666666666666666666666665 44442 233333332222 23366
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.|...+.+..... +-...++..+...|...|.++-|+..+++.++. -...|+.|..++-..|+..+|...|.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666666655542 223455556666666667777777777666332 345677777777777777777777776665
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-ch
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SV 237 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~ 237 (311)
.. +--....+.|...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|...|++. .++|+. ..
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 42 22345666677777777777777777777663 3443 345666777777777777777777766 666654 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|+.+...|...|+.+.|.+.+.+++..+|.-..++..|+..|...|+..+|+.-+++..+...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 666666777777777777777777777777666777777777777777777777776665443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.9e-17 Score=146.33 Aligned_cols=216 Identities=9% Similarity=0.007 Sum_probs=135.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...+++.++.. +.+...|..+..++...|++++|+..|+++.. .+...|..+...+...|++++|...|
T Consensus 344 ~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 344 KGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555432 11234455555555556666666666655522 14556666666666677777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD 234 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 234 (311)
++..+.. +.+...+..+...+.+.|++++|+..|++.++. .+.+...++.+..++...|++++|.+.|++. ...|+
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 7666542 224555666666677777777777777777643 2223556777777777788888888877775 33343
Q ss_pred c-chH-------HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 235 A-SVL-------GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 235 ~-~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
. ..+ +.....+...|++++|..+++++++.+|++..++..++.++.+.|++++|.+.|++..+.
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 111 111112334578888888888888888887777888888888888888888888877654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=2.6e-17 Score=154.51 Aligned_cols=287 Identities=11% Similarity=0.077 Sum_probs=189.6
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH---------HH
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV---------LS 71 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l---------l~ 71 (311)
.+...|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+..+. .++...+..+ +.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHH
Confidence 45678999999999999843 3 6789999999999999999999999999874411 1111222222 11
Q ss_pred HhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHH------------
Q 040965 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWN------------ 136 (311)
Q Consensus 72 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~------------ 136 (311)
......+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.. | +...+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 1112234788999999999999875 34566777889999999999999999998843 2 222222
Q ss_pred ------------------------------HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHH
Q 040965 137 ------------------------------AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 137 ------------------------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
.+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 12344556799999999999988763 22566777888889999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHH--------------------------------------------HHHHHhcCCHHHH
Q 040965 187 LELFHSMLGKFEVVPIMEHYGCV--------------------------------------------VDLLGRAGLLSEA 222 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~g~~~~A 222 (311)
...++++.+.... +...+..+ ...+...|++++|
T Consensus 515 ~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999988754221 12122111 2223334444444
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 223 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.++++.- +++...+..+...+...|++++|...|+++++..|+++.++..++.+|...|++++|.+.++...+
T Consensus 593 ~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4444421 123334444555566666666666666666666666666666666666666666666666665544
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=6.2e-17 Score=152.04 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=163.8
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhh-----
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCA----- 74 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~----- 74 (311)
.+.+.|++++|+..|+++.. | +...+..+...+...|++++|++.|+++.+ ..|+. ..+..+...+.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHH
Confidence 45688999999999999843 3 567888899999999999999999999987 44543 23332222211
Q ss_pred ----------------------------------hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHH
Q 040965 75 ----------------------------------GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120 (311)
Q Consensus 75 ----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 120 (311)
.+...|++++|.+.+++.++.. +.+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 0112455666666666666553 22445555566666666666666
Q ss_pred HHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH---------HHHHHHHHHHHccccHHHHHH
Q 040965 121 IRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE---------ITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 121 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+..++++.. | +...+..+...+...+++++|...++.+......++. ..+......+...|+.++|..
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 666666522 2 3333333333344455555555554443211111110 001122333444455555554
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+++. .+++...+..+...+.+.|++++|.+.|++. ...| +...+..++..+...|++++|.+.++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 4441 1223334555666666666666666666666 3333 345555666666666666666666666666666
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
++...+..++.++...|++++|.++++++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 665566666666666666666666666666543
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=3e-19 Score=142.62 Aligned_cols=258 Identities=17% Similarity=0.137 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
.+...+.+.|++++|++++++..... .+|+...|-.++...+.. .++.+.|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~~~~~~~~a~La~~--~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI--APPDDPEYWRLLADLAWS--LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccc--cccccccccccccccccccc-ccccccccccc
Confidence 45778889999999999996654432 256666665554433222 55699999999999987633 66677777777
Q ss_pred HhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHH
Q 040965 111 YGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
...+++++|.+++.+. ..+++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999998877 33466778888899999999999999999987543 3457778888899999999999999
Q ss_pred HHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 188 ELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
+.+++.++. .| |......++..+...|+.+++.++++.. ..+.|...+..+..++...|+.++|...++++.+.
T Consensus 167 ~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 999999964 55 4667888999999999999988888777 22456677888999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.|+++.....+++++...|+.++|.++.++..+
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999887643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.5e-15 Score=136.94 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=135.4
Q ss_pred hhhhcCChHHHHHHHHHhc--cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENML--KR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.+.|++++|..+|++.. .| +...+..++..+...|++++|+..+++..+ ..|+...+..+..++ ...|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~----~~P~~~~~~~la~~l---~~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS----GAPDKANLLALAYVY---KRAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH---HHCC
Confidence 4555666666666666642 12 344555566666666666666666666655 233333322222211 1245
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-------------------------------
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI------------------------------- 129 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------- 129 (311)
+.++|...++++.+..+. +...+..+..++...|+.++|++.++.+..
T Consensus 131 ~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 566666666666555322 333333344444444444433333331110
Q ss_pred ------------------chHh---hHH----HHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccccH
Q 040965 130 ------------------KDVC---TWN----AMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLV 183 (311)
Q Consensus 130 ------------------~~~~---~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~ 183 (311)
.++. .+. ..+..+...|++++|+..|+++.+.+.+ |+. ....+..+|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 0000 000 0012233445666666666666554321 221 111234456666666
Q ss_pred HHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------Cc---chHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-------------DA---SVLGALLGA 244 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~---~~~~~l~~~ 244 (311)
++|+..|+++.......+ .......+..++...|++++|.++++.+ ...| +. ..+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 666666666553211110 0123344444555666666666666555 2112 11 112233344
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+...|+.++|+..++++....|.+...+..++..+...|++++|++.+++....
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 555566666666666665555555555555555555566666666665555543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.3e-15 Score=137.24 Aligned_cols=292 Identities=9% Similarity=0.050 Sum_probs=212.3
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHH-HHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS-VLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~ 77 (311)
...+.+.|++++|+..+++... | +.. +..+..++...|++++|+..++++.+ ..|+...... +..++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~--- 161 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----RAPQTQQYPTEYVQALR--- 161 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH---
Confidence 3467789999999999999843 3 556 88889999999999999999999988 4565543322 222111
Q ss_pred hcCcc----------------------------------------------hhHHHHHHHHhhc-cCCchHH-HH----H
Q 040965 78 NEGGL----------------------------------------------YLGKQVHGYILRN-EIVLSVF-MG----T 105 (311)
Q Consensus 78 ~~~~~----------------------------------------------~~a~~~~~~~~~~-~~~~~~~-~~----~ 105 (311)
..+.. ++|++.++.+.+. ...|+.. .+ .
T Consensus 162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 11112 4455555565543 1122211 11 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccch---H-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHH
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIKD---V-CTWNAMISSLASNSREKEALVMFDEMKEKGLRA---NEITFVAVLTACA 178 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~ 178 (311)
..+..+...|++++|+..|+++...+ + .....+..+|...|++++|+.+|+++.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 11234467799999999999996542 1 122335778999999999999999987653111 1345666777889
Q ss_pred ccccHHHHHHHHHHhhccCC----------Cccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFE----------VVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
..|++++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999986411 1122 224556778899999999999999998 4345 4567778888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++++....
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999999999999999999999886543
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.3e-16 Score=132.42 Aligned_cols=279 Identities=12% Similarity=0.031 Sum_probs=218.0
Q ss_pred ChHHHHHHHHHhccc--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH
Q 040965 10 DMDSAILLFENMLKR--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86 (311)
Q Consensus 10 ~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~ 86 (311)
+..+|...|..++.. | ..+...+.++|...+++++|.++|+.+.+..+-..-+...|.+.+- .+. -+-++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW---HLq----~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW---HLQ----DEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH---HHH----hhHHH
Confidence 457788888886332 3 3466789999999999999999999998854322235677777773 222 22233
Q ss_pred HHHHH-HhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 87 QVHGY-ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..+.+ +.+. -+.++.+|..+.++|.-+++.+.|++.|++.+.- ...+|+.+..-+.....+|.|...|+.....
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 33332 3332 2556899999999999999999999999999554 5578888888999999999999999987654
Q ss_pred CCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 040965 163 LRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVL 238 (311)
Q Consensus 163 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 238 (311)
.| +-..|..+...|.+.++.+.|+-.|+++.+ +.| +.+....+...+.+.|+.++|+++++++ ...| |+..-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 33 344666677789999999999999999984 555 4556677788899999999999999999 4444 44443
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
-.-+..+...+++++|+..++++.+..|++...|..++..|.+.|+.+.|..-|--+.+.+.+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 444556778999999999999999999999999999999999999999999999887765554
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=2e-15 Score=126.16 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=210.3
Q ss_pred cCChHHHHHHHHHhccc--cHHH-HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKR--DVVS-WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
.|++++|++......+. ++.. |-....+..+.|+++.|.+.+.++.+ ..|+......+..+-... ..|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l-~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQL-ARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHH-HCCCHHH
Confidence 59999999988877543 2333 33334555899999999999999987 567765444333222222 3788999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hH--------hhHHHHHHHHHcCCCHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DV--------CTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~ 153 (311)
|...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 446788888999999999999999999988533 11 234444444445556667777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
+++.+.+. .+.+......+...+...|+.++|...+++..+. .|+... .++.+....++.+++.+.++.. ...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 77766443 2447778888999999999999999999999864 444422 2334444669999999999988 556
Q ss_pred CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 233 PDAS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 233 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|+.. ....+...+...+++++|.+.|+++.+..|++. .+..+..++.+.|+.++|..++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7654 566778889999999999999999999999986 788999999999999999999987654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=5.4e-15 Score=134.25 Aligned_cols=286 Identities=10% Similarity=0.058 Sum_probs=211.3
Q ss_pred hhhcCChHHHHHHHHHhcc-c-----cHHHHHHHHHHHHhcCC---HhHHHHH----------------------HHHhh
Q 040965 5 YVKNGDMDSAILLFENMLK-R-----DVVSWTSIINGFVRNGC---FGEAICV----------------------FKNMM 53 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~~~ 53 (311)
..+.|+.++|..+|+.... + +...-.-++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4678999999999998844 2 23344567777777766 3333333 11111
Q ss_pred cCCCCCCC--chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--
Q 040965 54 GNVNLVRP--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-- 129 (311)
Q Consensus 54 ~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 129 (311)
..-+..++ +...|..+-.++. .++.++|...+.+..... |+......+...+...|++++|...|+++..
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~----~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYR----DTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHH----hCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 11100122 3444444443332 356888999888877664 4444444455566789999999999998733
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
++...+..+..++.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++.++ ..|+...+..+
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~L 615 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVAR 615 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 344556777888899999999999999998764 22334444444455567999999999999985 46677889999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..++.+.|++++|.+.+++. ...|+. ..+..+...+...|++++|...++++++..|+++.++..++.++...|++++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 566755 5566666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccC
Q 040965 288 ATDLRKAMVEAGI 300 (311)
Q Consensus 288 A~~~~~~m~~~~~ 300 (311)
|...+++..+...
T Consensus 696 A~~~l~~Al~l~P 708 (987)
T PRK09782 696 TQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987653
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=6.6e-15 Score=133.70 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+..++.. +++++|+..+.+... ..|+... .+..++. +...|++++|...++++... +|+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~----~~Pd~~~--~L~lA~a-l~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ----RQPDAWQ--HRAVAYQ-AYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH----hCCchHH--HHHHHHH-HHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 56788888888877 899999999988887 4576543 2222222 22378899999999998665 3344455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHH---HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWN---AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..+...+.+.|++++|...+++....++.... .+.......|++++|...+++..+. .|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 67788899999999999999988655433333 3334445569999999999999876 567888999999999999
Q ss_pred cHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHH
Q 040965 182 LVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
+.++|...+++.+.. .| +...+..+..++...|++++|++.+++. ...|+ ...+..+..++...|++++|...+
T Consensus 624 ~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 624 NVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999864 44 4567888888999999999999999998 55664 467788888999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++++..|++..+.........+..+++.|.+-+++--..++.
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999888889999999999999999988876655443
No 26
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.4e-14 Score=110.75 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=219.6
Q ss_pred cCChHHHHHHHHHhccccHH---HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKRDVV---SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
..+.++|.++|-+|.+.|+. +.-+|.+.|.+.|..++|+++-..+.++. --+...-...+...-..+...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp--dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP--DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46789999999999766544 55688999999999999999999987643 11222222223222233444777999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHH--------HHHHHHHcCCCHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN--------AMISSLASNSREKEALVMFD 156 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~ 156 (311)
|+++|..+.+.+ .--......|+..|-...+|++|+++-+++.+-+...|+ -+...+....+.+.|..+++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998855 223455677899999999999999999888655444443 34455566789999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+..+.+ +-.+..-..+.+.....|+++.|.+.++.+.++ +..--..+...|..+|...|+.++....+.++ ...++.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 988774 224455556677889999999999999999877 44445667888999999999999999999887 556777
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh---ccchhHHHHHHHHHHHHccCCCCCcccc
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA---GLERWNRATDLRKAMVEAGIRKIPAYSL 308 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 308 (311)
..-..+...-....-.+.|...+.+-+...|+.. .+..|++.-. ..|.+.+-..+++.|...-++..|.+.+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 7777776666667777888888888887888765 5556665543 3456888888999998887777766543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=3.3e-14 Score=126.73 Aligned_cols=288 Identities=11% Similarity=0.063 Sum_probs=183.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcccc-HHHHH--HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLKRD-VVSWT--SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~ 77 (311)
+..+...|+.++|+..+++...|+ ...+. .+...+...|++++|+++|+++.+. .|+.. .+..+.. ...
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP~n~~~l~gLa~---~y~ 147 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK----DPTNPDLISGMIM---TQA 147 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHH---HHh
Confidence 345666777777777777776552 22233 3355677778888888888888773 44442 2222222 222
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhh--------------------
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCT-------------------- 134 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~-------------------- 134 (311)
..++.++|++.++++.+.. |+...+..++..+...++..+|++.++++.. | +...
T Consensus 148 ~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 148 DAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3566778888887777663 3444444444444445555557777776611 1 0000
Q ss_pred ------------------------------------------------HH---------------------HHHHHHHcC
Q 040965 135 ------------------------------------------------WN---------------------AMISSLASN 145 (311)
Q Consensus 135 ------------------------------------------------~~---------------------~l~~~~~~~ 145 (311)
+. -.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 00 012234455
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
|++.++++.|+.|...+.+....+-..+.++|...+++++|..+++.+....+ ..++......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 77777777888777776554556777788888888888888888888765421 12233334677788888888888
Q ss_pred HHHHHHhC-CCCC-------------Cc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 222 AKEFMRSM-PFEP-------------DA---SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 222 A~~~~~~~-~~~p-------------~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|..+++++ ...| |. ..+..++..+.-.|+..+|++.++++....|.+......+...+...|.
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 88888877 1112 21 1123345567778888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHc
Q 040965 285 WNRATDLRKAMVEA 298 (311)
Q Consensus 285 ~~~A~~~~~~m~~~ 298 (311)
..+|...++.....
T Consensus 466 p~~A~~~~k~a~~l 479 (822)
T PRK14574 466 PRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888666544
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=5.6e-14 Score=118.04 Aligned_cols=282 Identities=12% Similarity=0.019 Sum_probs=199.2
Q ss_pred hhcCChHHHHHHHHHhcc--cc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 6 VKNGDMDSAILLFENMLK--RD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
...|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+.+..+ ..|+......+..+-..+. .|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~-~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLA-QNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHH-CCCH
Confidence 357999999999988744 33 33445556778888999999999999876 3455432111111111222 7789
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHH----HHHHHHHcCCCHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWN----AMISSLASNSREKEALVMF 155 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~ 155 (311)
+.|...++.+.+.. |-+..+...+...+...|++++|.+.+..+.+. +...+. .....+...+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999986 446678888999999999999999999988533 333221 1111223333444444555
Q ss_pred HHHHHcCC---CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhh---HHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 156 DEMKEKGL---RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH---YGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 156 ~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+.+... +.+...+..+...+...|+.++|.+.+++.++. .|+... .....-.....++.+.+.+.+++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 55554421 127788888999999999999999999999975 344321 111222233457888898888887
Q ss_pred -CCCCCcc---hHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 230 -PFEPDAS---VLGALLGACKIHGAVDLCHEVGR--RLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 230 -~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...|+.. ...++...+.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++-..
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556555 45577888999999999999999 4666778775 577999999999999999999998644
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=2.7e-14 Score=119.36 Aligned_cols=254 Identities=9% Similarity=-0.015 Sum_probs=191.8
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|++++|.+.+....+.. ++ ...+.++.+.... ..|+.+.+...+.++.+....+...........+...|++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~----~~-p~l~~llaA~aA~-~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA----EQ-PVVNYLLAAEAAQ-QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc----cc-hHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH
Confidence 4699999998888765532 22 2333344333323 3888999999999998764333223333447789999999
Q ss_pred HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHH
Q 040965 118 ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-------ITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 118 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 187 (311)
+.|...++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998433 6778889999999999999999999999988655433 23334444444455667777
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++++.+.+. .+.++.....+...+...|+.++|.+.+++. ...|+.... ++.+....++.+++.+..++..+..|
T Consensus 250 ~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 250 RWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777777543 3456778888999999999999999999888 544555322 33444566999999999999999999
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++..+..++..+.+.|+|++|.+.|+...+....
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999986543
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1e-16 Score=128.08 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=109.7
Q ss_pred hhhhhcCChHHHHHHHHHh---c--cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENM---L--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 77 (311)
..+.+.|++++|.++++.. . ..|...|..+...+...++++.|.+.++++...+. -+...+..++.. .
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~~~~l~~l----~ 88 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQDYERLIQL----L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccc----c
Confidence 5677899999999999643 1 22666777788888889999999999999988652 134445555542 2
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc-----cchHhhHHHHHHHHHcCCCHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-----IKDVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
..+++++|.++++...+.. ++...+..++..+.+.++++++.++++++. +.+...|..+...+.+.|++++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3777999999998876653 456667788899999999999999999863 346778889999999999999999
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 153 VMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 153 ~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
+.+++..+. .| |......++..+...|+.+++..+++...+. .+.++..+..+..+|...|++++|..+|++. .
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999987 45 5778889999999999999999999998764 3556667889999999999999999999998 4
Q ss_pred CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 231 FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 231 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
..| |......+..++...|+.++|..+.+++.+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 345 667778888999999999999999988764
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=6.5e-14 Score=120.30 Aligned_cols=286 Identities=14% Similarity=0.146 Sum_probs=207.2
Q ss_pred hhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcC
Q 040965 5 YVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 80 (311)
+.-.|++++|..++.++++. +...|.+|...|-..|+.+++...+-.+.. +.|. ...|..+-. ...+.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~e~W~~lad---ls~~~~ 221 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDYELWKRLAD---LSEQLG 221 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCChHHHHHHHH---HHHhcc
Confidence 33449999999999999654 677999999999999999999988877655 3443 344444443 444577
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH--------hhHHHHHHHHHcCCCHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV--------CTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~ 152 (311)
.+++|.-.|.+.++.. +++....-.-+..|-+.|+...|...|.++...++ ..-...+..+...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7999999999999886 45565555678888999999999999988833211 12223345555566666666
Q ss_pred HHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc------------------------------------
Q 040965 153 VMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLG------------------------------------ 195 (311)
Q Consensus 153 ~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------ 195 (311)
+.++.....+ -..+...++.++..+.+...++.|......+..
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 6666554421 122333444555555555555544444433332
Q ss_pred -------------------------cCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCcchHHHHHHHH
Q 040965 196 -------------------------KFEV--VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE--PDASVLGALLGAC 245 (311)
Q Consensus 196 -------------------------~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~ 245 (311)
. +. .-+...|.-+.++|...|++.+|+++|..+ ..+ .+...|..+..+|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 21 223455777888999999999999999999 222 3456888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
...|.+++|.+.|++++...|++..+-..|...+.+.|+.++|.+.+..|...+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999999999877333
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=4.6e-14 Score=118.55 Aligned_cols=262 Identities=9% Similarity=-0.061 Sum_probs=187.8
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...|+++.|.+.+.+..+ ..|+...+.. +.+-. ....|+.+.+.+.+.+..+....+...+.......+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~----~~~~~~~~~l-laA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD----HAAEPVLNLI-KAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhh----cCCCCHHHHH-HHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 468999999999998876 4465544333 32222 22378899999999998876433333444556888899999
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH---HHccccHHHHHHHH
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA---CARAQLVELGLELF 190 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~ 190 (311)
++.|...++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..+ ....+..+.+.+.+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999843 3 6778889999999999999999999999998755433221111122 23333444444455
Q ss_pred HHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH-HHHH--HHHhcCChhHHHHHHHHHHhc
Q 040965 191 HSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLG-ALLG--ACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 191 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~--~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..+.+.. ..+.+...+..++..+...|+.++|.+.+++. ...||..... .++. .....++.+.+.+.+++..+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5554431 11236778888999999999999999999998 5566665311 1222 234467889999999999999
Q ss_pred CCCch--hHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 265 QPKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 265 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
.|+++ ....+++..+.+.|+|++|.+.|+........|++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 99998 78889999999999999999999954443334443
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=2.5e-13 Score=121.22 Aligned_cols=291 Identities=11% Similarity=0.072 Sum_probs=211.8
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..|...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..+ ++...+ .
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~l--ayL~~~-~ 182 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTL--SYLNRA-T 182 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHH--HHHHHh-c
Confidence 356778999999999999943 3 567777888889999999999999999987 45666665333 322222 3
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc---------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV--------------------------------------------- 114 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------------------- 114 (311)
++..+|++.++++.+.. +.+...+..+.....+.
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 33444777777776654 22333333333333333
Q ss_pred --------------------------------------------CCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCC
Q 040965 115 --------------------------------------------GCLERAIRVFKSMVIK----DVCTWNAMISSLASNS 146 (311)
Q Consensus 115 --------------------------------------------g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~ 146 (311)
|++.++++.|+.+..+ ...+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 3333444444433211 2234556788999999
Q ss_pred CHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC------------Cccch-hhHHH
Q 040965 147 REKEALVMFDEMKEKG-----LRANEITFVAVLTACARAQLVELGLELFHSMLGKFE------------VVPIM-EHYGC 208 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~-~~~~~ 208 (311)
++++|..+|+++.... ..++......|..++...+++++|..+++.+.+... ..||- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987643 123444467899999999999999999999986311 11222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
++..+...|+..+|++.++++ ...| |......+...+...|.+.+|+..++.+....|++..+....+.++...|+|.
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 678888999999999999999 3344 66778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 040965 287 RATDLRKAMVEAGIR 301 (311)
Q Consensus 287 ~A~~~~~~m~~~~~~ 301 (311)
+|..+.+.+.+..+.
T Consensus 502 ~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 502 QMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999888765543
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.7e-13 Score=107.73 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=202.2
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc
Q 040965 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE 96 (311)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 96 (311)
++-+.......+|..||.++++-...+.|.++|++..+.. .+.+..+||.+|.+.. +....++..+|....
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S-------~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASS-------YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHH-------hhccHHHHHHHHHhh
Confidence 5555556688899999999999999999999999998877 7889999999998543 444488999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHH----Hc----ccchHhhHHHHHHHHHcCCCHHH-HHHHHHHHHHc----CC
Q 040965 97 IVLSVFMGTALIDLYGKVGCLERAIRVFK----SM----VIKDVCTWNAMISSLASNSREKE-ALVMFDEMKEK----GL 163 (311)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~----~~ 163 (311)
+.||..|+|+++++..+.|+++.|.+.+- +| ++|...+|..+|..+++.++..+ |..++.++... .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999999999887766544 44 67899999999999999888754 44555555432 22
Q ss_pred C---C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC---Cccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC---C
Q 040965 164 R---A-NEITFVAVLTACARAQLVELGLELFHSMLGKFE---VVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM---P 230 (311)
Q Consensus 164 ~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 230 (311)
. | |...|...+..|.+..+.+.|.++..-.....+ +.|+ ..-|..+..+.|.....+.-...|+.| -
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 3 456677888889999999999888776654321 1222 223456667777888888888888888 3
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh---------------------cCCCch--------------------
Q 040965 231 FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE---------------------LQPKHC-------------------- 269 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~-------------------- 269 (311)
.-|+..+...++++....|.++-.-+++..++. ..|.++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777766655555554432 122211
Q ss_pred --------------hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 270 --------------GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 270 --------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
...+..+..+.|.|+.++|.+++.-+.+.+
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 234455666788999999999998886543
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=1.3e-13 Score=107.16 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=165.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
.....+..+...+...|++++|...+++.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778889999999999999999987432 56778888999999999999999999988764 335677788888
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 253 (311)
.+...|++++|...+++..+..........+..+..++...|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999865222334456777888999999999999999988 44444 4677788888999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888887778888899999999999999998887654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.1e-13 Score=109.85 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=147.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcc---cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMV---IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
|-.+...|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=|++.+... +-+...|..+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 4445556666666677777776652 2266778777788888888999999998887753 22567788888888899
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------cchHHHHHHHHHhcCC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---------ASVLGALLGACKIHGA 250 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~g~ 250 (311)
++++++...|++.+++ ++..+..|+.....+...+++++|.+.|+.. ...|. ..+...++-. .-.++
T Consensus 442 ~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence 9999999999999885 4555678999999999999999999999887 44444 1122222222 23489
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+..|..+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999998999999999999999999999998754
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.8e-13 Score=108.51 Aligned_cols=270 Identities=11% Similarity=0.106 Sum_probs=205.7
Q ss_pred hhhhcCChHHHHHHHHHhccccHHH----HHHHHHH-HHh-cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHH-hhhh
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVS----WTSIING-FVR-NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS-CAGL 76 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~-~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~ 76 (311)
-|.++|+++.|++++.-..+.|..+ -+.|-.. |.+ -.++..|.++-+.....+ .+.-..+..- -..+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------ccCHHHhhcCCceee
Confidence 4778999999999888775553222 2222222 222 346777877777765432 2222222210 0112
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
. .|++++|...+.+.+..........|| +.-.+-..|++++|+++|-++ ...+..+.-.+.+.|-...+..+|++
T Consensus 502 ~-ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 A-NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred e-cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 2 788999999999999876444444444 555678899999999999877 44577788888999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
++.+.... ++.|......|...|-+.|+-.+|.+.+-.--+ -++-+..+...|..-|....-+++|+.+|++. -+.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99876654 455788999999999999999999988655443 34557888999999999999999999999998 678
Q ss_pred CCcchHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 233 PDASVLGALLGA-CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 233 p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|+..-|..++.. +.+.|++++|.++++...+..|.+..+...|++.+...|-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999988866 5679999999999999999999999999999999887763
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.5e-13 Score=107.30 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
.|.-++.+.|+-.++.++|..+|++..+.+ +-....|+.+..-|....+...|..-++.+.+- .+.|-..|-.|.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHH
Confidence 344455667778889999999999998874 335678888888999999999999999999853 34477899999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (311)
|.-.+-+.=|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|+++...+-.+..++..|+..|.+.++.++|..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999998 6666 668899999999999999999999999998776666799999999999999999999
Q ss_pred HHHHHHH
Q 040965 291 LRKAMVE 297 (311)
Q Consensus 291 ~~~~m~~ 297 (311)
.|++..+
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 9988766
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.7e-14 Score=120.06 Aligned_cols=211 Identities=12% Similarity=0.081 Sum_probs=171.6
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc---------------------------------
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--------------------------------- 128 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------------- 128 (311)
..+|...|+.+.. .+.-+.++...+..+|...+++++|+++|+.+.
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5666666666333 233334566666777777777777777776651
Q ss_pred ----cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-
Q 040965 129 ----IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI- 202 (311)
Q Consensus 129 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 202 (311)
+..+.+|-++.++|.-+++++.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+..+ ++.|.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence 115678999999999999999999999999876 45 67899999999999999999999999998 44443
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
-..|..|...|.++++++.|+-.|+++ .+.|. ......+...+-+.|+.|+|+++++++..++|.++-+-..-+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 356677888999999999999999998 77774 4556666777889999999999999999999999988889999999
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..+++++|...++++++.
T Consensus 569 ~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKEL 586 (638)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 999999999999999874
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.4e-12 Score=99.97 Aligned_cols=282 Identities=13% Similarity=0.122 Sum_probs=202.2
Q ss_pred cCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
.|+|.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+ ..+|.....-+..+ -.+..+|+.+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae----~~~~~~l~v~ltra-rlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE----LAGDDTLAVELTRA-RLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc----cCCCchHHHHHHHH-HHHHhCCCchh
Confidence 58899998888776333 344566666777788999999999998876 33343333222222 23333888899
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
|..-..++.+.+ +.++.+......+|.+.|++.....++.++.+. ...+|..+++-....+..+.-..
T Consensus 172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 999888888876 345677788889999999999999998888444 23467777777666666666666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
.++..... ..-+...-.+++.-+...|+.++|.++..+.+++ +.+|+ ...++ .+.+.++...-++..++. ...
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC
Confidence 66665433 2335556667777888899999999999988877 66665 22222 234566666655555554 222
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
| ++..+..|...|.+.+.+.+|...|+.+++..|+.. .|..+..++.+.|+.++|.+++++-.-.-.+|
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 336677788889999999999999999998888765 89999999999999999999999887554443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.9e-13 Score=105.64 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=189.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
....+.-...++++|+.+|+++.+.++=---|..+|+.++-.- . -...+..+.+-.-.=.+-.+.|...+.+.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-----~--~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-----N--DKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-----h--hhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 3344455667888888888888776531112556776666421 1 11122222222111112234566777888
Q ss_pred HhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 111 YGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
|+-.++.++|...|+...+. ....|+.+..-|...++...|++-|+...+-. +.|-..|-.+..+|.-.+.+.=|+
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHH
Confidence 88999999999999988554 45789999999999999999999999998763 448899999999999999999999
Q ss_pred HHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 040965 188 ELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263 (311)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 263 (311)
-+|++... ++| |...|.+|.++|.+.++.++|+..|... .-..+...+..|...|-+.++.++|...|++.++
T Consensus 419 yYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 419 YYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999984 455 6789999999999999999999999998 3245668899999999999999999999998876
Q ss_pred ------cCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 264 ------LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 264 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..|....+-..|..-+.+.+++++|..+.....
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 334444455567777888888888877655443
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.8e-12 Score=112.97 Aligned_cols=261 Identities=10% Similarity=-0.011 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhh------hcCcchhHHHHHHHH
Q 040965 25 DVVSWTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLV------NEGGLYLGKQVHGYI 92 (311)
Q Consensus 25 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~------~~~~~~~a~~~~~~~ 92 (311)
+...|...+.+-.. .+.+++|..+|++..+ ..|+... |..+..++.... ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 45555555555322 2346799999999998 5676543 333332222221 235588999999999
Q ss_pred hhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHH
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
++.. +.+...+..+...+...|++++|+..|+++.. | +...+..+...+...|++++|...+++..+.... +...
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 9886 44677888889999999999999999999843 3 4667888999999999999999999999887422 2333
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchH-HHHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVL-GALLGACK 246 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~ 246 (311)
+..++..+...|++++|...++++... ..| ++..+..+..++...|++++|.+.++++ ...|+.... +.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999998764 234 3445777888899999999999999998 445554443 44445566
Q ss_pred hcCChhHHHHHHHHHHh---cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 247 IHGAVDLCHEVGRRLLE---LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..| +.|...++++.+ ..|.++ .. +...|.-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~-~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNP-GL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCc-hH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 488887887775 334443 22 44445555666666555 7777654
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.7e-11 Score=96.68 Aligned_cols=253 Identities=13% Similarity=0.051 Sum_probs=204.0
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|+|.+|.++..+..+.+ +..+.+.++.+-+. ...|+.+.+-.++.+.-+....++..+.-+........|++
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 4799999999999987766 33344445444333 34888999999999998875577778888888999999999
Q ss_pred HHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHH
Q 040965 118 ERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-------ITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 118 ~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 187 (311)
..|..-+.++ ...++........+|.+.|++.+...++..|.+.|.--++ .+|..++.-....+..+.-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 9999988776 4458889999999999999999999999999999876554 47888888887777788877
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+.|+....+ .+-++..-.+++.-+.++|+.++|.++.++. +-.-|.. . ...-.+.+-++...-++..++..+..|
T Consensus 250 ~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 250 TWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 888887664 4555667778889999999999999999887 3233333 2 222346688899999999999999999
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++..+.+|+..|.+.+.|.+|...|+...+.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999997766543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.9e-11 Score=93.96 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=184.0
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch---HHHHHHHHHHHhh
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTALIDLYGK 113 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 113 (311)
.-+++.++|.++|-+|.+. .|.....+.-+. .-+.+.|..+.|+.+.+.+.++.--+. ......|..-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~----d~~t~e~~ltLG--nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE----DPETFEAHLTLG--NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhc----CchhhHHHHHHH--HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 3457899999999999773 344333333332 233348889999999999987632221 2344557788999
Q ss_pred cCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccccHHHH
Q 040965 114 VGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARAQLVELG 186 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 186 (311)
.|-++.|+.+|..+... -......|+..|-...+|++|+++-+++.+.+..+.. ..|--+...+....+.+.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999763 3456778899999999999999999999887655532 3455666667778899999
Q ss_pred HHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 187 LELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA--SVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
...+.+..+. .|+ +..--.+.+.+...|++++|.+.++.+ .-.|+. .+...|..+|...|+.++...++.++.
T Consensus 200 ~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 200 RELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999854 444 344445668889999999999999998 334443 556778899999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 263 ELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..+... .-..+........-.+.|..++.+-..+
T Consensus 277 ~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 277 ETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 8776653 4445555544444556666666555443
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.5e-11 Score=105.62 Aligned_cols=202 Identities=15% Similarity=0.068 Sum_probs=107.2
Q ss_pred ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-------hH------hhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-------DV------CTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
.+-++.+...|.+...+...|++++|...|.+.... |. .+--.+...+-..++.+.|.+.|+.+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344566777788888888888888888888766221 11 11122344444556666666666666654
Q ss_pred CCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcc
Q 040965 162 GLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDAS 236 (311)
Q Consensus 162 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~ 236 (311)
.|+ ...|..++......++..+|...++..+.- ...++..++.+...+.+...+..|.+-|+.+ ...+|..
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 232 233333433333445666666666666543 2223334444555555555555555533333 1223444
Q ss_pred hHHHHHHHHH------------hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 237 VLGALLGACK------------IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 237 ~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+..+|...|. ..+..++|+++|.++++.+|.+..+-+.++-+++..|++.+|..+|.+.++...
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 4444443332 122345566666666666666555555555556666666666666666555443
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4.2e-11 Score=95.49 Aligned_cols=294 Identities=13% Similarity=0.105 Sum_probs=191.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENMLK----RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||.++|+-...++|.+++++... -+..+||.+|.+-.- ....+++.+|.... +.||..|+|+++++.+..
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk--m~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK--MTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh--cCCchHhHHHHHHHHHHh
Confidence 47889999999999999998733 377888888876543 33378889999888 999999999999987765
Q ss_pred hhc-CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHH-HHHHHHHc-----------ccc-hHhhHHHHHHHH
Q 040965 77 VNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER-AIRVFKSM-----------VIK-DVCTWNAMISSL 142 (311)
Q Consensus 77 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-----------~~~-~~~~~~~l~~~~ 142 (311)
++- .....|.+++.+|.+.|+.|+..+|..++..+++-++..+ |..++.++ ..| |...|...+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 531 1245677888999999999999999999999998887654 44444444 111 444555566666
Q ss_pred HcCCCHHHHHHHHHHHHHcC----CCCcH---HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 143 ASNSREKEALVMFDEMKEKG----LRANE---ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
.+..+.+-|.++-.-+.... +.|+. .-|..+....+.....+.-...|+.|.-. -+-|+..+...++.+...
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhh
Confidence 66667666666655443210 22221 22344445555555666666666665544 334444444444444444
Q ss_pred cCCHHHHHHHHHhC---------------------------------------------------------CCCCCcchH
Q 040965 216 AGLLSEAKEFMRSM---------------------------------------------------------PFEPDASVL 238 (311)
Q Consensus 216 ~g~~~~A~~~~~~~---------------------------------------------------------~~~p~~~~~ 238 (311)
.|.++-.-+++..+ .........
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l 525 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSL 525 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHH
Confidence 44444333333222 112233344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC---CCch--hHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQ---PKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+..+-.+.+.|..++|.+++....+.+ |..+ .+...+++.-.+......|..+++-|...+..
T Consensus 526 ~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 526 NCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 445555678999999999999886522 4333 23446677777888899999999998776654
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=6.2e-12 Score=109.70 Aligned_cols=229 Identities=10% Similarity=-0.058 Sum_probs=171.2
Q ss_pred chHHHHHHHHHhhhhh--hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh---------cCCHHHHHHHHHHcccc
Q 040965 62 NEATYVSVLSSCAGLV--NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---------VGCLERAIRVFKSMVIK 130 (311)
Q Consensus 62 ~~~~~~~ll~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 130 (311)
+...|...+.+-.... ..+..++|...+++..+..+ .+...+..+..+|.. .+++++|...++++...
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4445555555422211 13447899999999998752 345566666665542 34588999999988443
Q ss_pred ---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch-hhH
Q 040965 131 ---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-EHY 206 (311)
Q Consensus 131 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 206 (311)
+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.++. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 67788888889999999999999999998874 335677888888999999999999999999864 4442 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM--PFEPDAS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
..++..+...|++++|.+.+++. ...|+.. .+..+...+...|++++|...++++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455567789999999999887 2245544 45666677889999999999999988888887777778888888888
Q ss_pred hhHHHHHHHHHHHH
Q 040965 284 RWNRATDLRKAMVE 297 (311)
Q Consensus 284 ~~~~A~~~~~~m~~ 297 (311)
++|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 478887777765
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=2.1e-11 Score=97.86 Aligned_cols=210 Identities=16% Similarity=0.057 Sum_probs=126.2
Q ss_pred chhHHHHHHHHhhcc-CCc--hHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNE-IVL--SVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.+.++..+.+++... ..| ....|..+...|.+.|+.++|...|++... .+...|+.+...+...|++++|...|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555432 112 234566677777777888888777777632 25667777777777888888888887
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 232 (311)
++..+. .| +..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ...
T Consensus 122 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 122 DSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 777765 33 4566666777777778888888888777753 333211111122234556777777777554 222
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 233 PDASVLGALLGACKIHGAVDLCHEVGRRLL-------ELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|+... .. ......|+...+ ..++.+. +..|....+|..++..+.+.|++++|...|++..+.++
T Consensus 197 ~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32221 11 222335555443 2333333 33445556777778888888888888888877776554
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=4.2e-11 Score=100.56 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=167.4
Q ss_pred hcCcchhHHHHHHHHhhc-----c-CCchH-HHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRN-----E-IVLSV-FMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMI 139 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~ 139 (311)
..|+++.|+.++++.++. | ..|.+ ...+.+...|...+++++|..+|+++..- -..+++.|.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 377799999999888765 2 12333 33345788999999999999999988221 346788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc-----CCC-CcH-HHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cc----cchhhH
Q 040965 140 SSLASNSREKEALVMFDEMKEK-----GLR-ANE-ITFVAVLTACARAQLVELGLELFHSMLGKFE--VV----PIMEHY 206 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~ 206 (311)
..|.+.|++++|..++++..+- |.. |.. ..++.+...|...+++++|..++....+... .. .-..++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 8999999999999998886532 222 222 3456677789999999999999987765422 11 124678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC---ch
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM---------PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLE----LQPK---HC 269 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~---~~ 269 (311)
+.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+... .+|+ ..
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99999999999999999999887 11222 35677888889999999999999988774 3444 45
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 270 GRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+|..|+..|.+.|++++|.++.+....
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5888999999999999999999988763
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=5.8e-11 Score=103.35 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=181.7
Q ss_pred hhhhhcCChHHHHHHHHHhcccc------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKRD------VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+.|.-.|+++.+..+...+...+ ..+|..+.++|...|++++|..+|.+..+ ..|+...+..+--+ ...
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----~~~d~~~l~~~Glg-Qm~ 352 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK----ADNDNFVLPLVGLG-QMY 352 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cCCCCccccccchh-HHH
Confidence 34455577777777777764432 34577777777777888888877777766 34554333221111 111
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC----CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG----CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK 149 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 149 (311)
...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..++ |...|-.+...+-.. +..
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChH
Confidence 22666777777777777763 335566666666666664 456666666666443 555666666665543 333
Q ss_pred HHHHHHHHH----HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cccc------hhhHHHHHHHHHhcC
Q 040965 150 EALVMFDEM----KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE--VVPI------MEHYGCVVDLLGRAG 217 (311)
Q Consensus 150 ~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~g 217 (311)
.++.+|... ...+..+.....|.+.......|+++.|...|........ ..++ ..+-..+..++-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 336555543 3344456667777777777788888888888777764311 1122 212333555666667
Q ss_pred CHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 218 LLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+++.|.+.|..+ ...|+- ..|..+.......+...+|...++++...+..++.++..++..+.+...|..|.+-|..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 778888888777 444544 334444433445567778888888888777777777777777777777777777777666
Q ss_pred HHccCCCCCccc
Q 040965 296 VEAGIRKIPAYS 307 (311)
Q Consensus 296 ~~~~~~~~~~~~ 307 (311)
.+.-...+..++
T Consensus 591 ~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 591 LKKTSTKTDAYS 602 (1018)
T ss_pred HhhhccCCchhH
Confidence 655444333333
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.9e-11 Score=98.08 Aligned_cols=262 Identities=12% Similarity=0.035 Sum_probs=202.6
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++.....-..-+...+++.+..++.+...+.. +++...+..-|.++.. .|+..+-..+=.++++.- |....+|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~e---l~~~n~Lf~lsh~LV~~y-P~~a~sW 315 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYE---LGKSNKLFLLSHKLVDLY-PSKALSW 315 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHH---hcccchHHHHHHHHHHhC-CCCCcch
Confidence 44455556677788999999999999998864 4555555555554444 333555555556666653 5567889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
-++.-.|...|+..+|.+.|.+...- -...|-.+..+|+-.|..++|...+...-+. ++-...-+..+.--|.+.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 99999999999999999999987433 4578999999999999999999999887654 1112222333445688899
Q ss_pred cHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--C---C---C-CCcchHHHHHHHHHhcCCh
Q 040965 182 LVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--P---F---E-PDASVLGALLGACKIHGAV 251 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~---~---~-p~~~~~~~l~~~~~~~g~~ 251 (311)
+.+.|.++|..... +.| |+...+-+.-.....+.+.+|..+|+.. . . . .-.++++.|..+|.+.+.+
T Consensus 395 n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999984 444 5666777776667788999999998876 1 1 1 1345678888999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++|+..+++++.+.|.+..++..++-.|...|+++.|.+.|.+..-
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988664
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=3.8e-11 Score=93.27 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=105.3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+
T Consensus 44 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 444566666665555443 22344555556666666666666666665532 23445555666666666666666666
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
++..+....+ ....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...|
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6665532112 2344555566666777777777777776643 1223445666666677777777777776665 2223
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 201 QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444555566677777777766665544
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5e-12 Score=97.27 Aligned_cols=216 Identities=14% Similarity=0.016 Sum_probs=146.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--chHhhH-HHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--KDVCTW-NAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|.+.+|.+.++..++. .|-+.||..|-..|.+..+...|+.++.+-.+ |..+|| .-+...+-..++.++|.++|
T Consensus 236 Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 34466777777666665 34445566666777777777777777776633 323333 33555666677777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 232 (311)
+...+.. +.+......+...|.-.++++.|+.++++++.. |+. ++..|..+.-+|...+++|-++.-|++. -..
T Consensus 314 k~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~ 390 (478)
T KOG1129|consen 314 KLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ 390 (478)
T ss_pred HHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence 7776652 335556666666677777788888888777765 443 4456777777777777777777777666 122
Q ss_pred CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 233 PD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 233 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
|+ ...|..+.......||+..|.+.|+-++..++++..+++.|.-.-.+.|++++|..+++......
T Consensus 391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 33 24566666666777888888888888888888888888888888888888888888887766543
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3.5e-11 Score=96.75 Aligned_cols=259 Identities=15% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh
Q 040965 34 NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113 (311)
Q Consensus 34 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (311)
..+.++|+++.|++++.-+.+.+ -+.-...-+.|-.. .-+....++..|.+.-+..+... .-+......-.+.-..
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l-~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKD--NKTASAAANNLCAL-RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHH-HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 34788999999999999887655 22222222222111 11211334777777777666543 2344444444555667
Q ss_pred cCCHHHHHHHHHHcccchHhhHHHHH---HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHH
Q 040965 114 VGCLERAIRVFKSMVIKDVCTWNAMI---SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (311)
.|++++|.+.+.+....|..+-.+|. -.+-..|+.++|++.|-++..- ...+......+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 89999999999999888776555444 3566789999999999887543 2336677778888899999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
.+... -++.|+.....|.+.|-+.|+-.+|.+.+-+- ..-| |..+..-|..-|....-++++..+|+++.-+.|+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 88864 34557788999999999999999999886555 4444 66777777777888888999999999998888887
Q ss_pred hhHHHHHH-HHHhccchhHHHHHHHHHHHHccC
Q 040965 269 CGRYVVLS-NIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 269 ~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
. -|..++ .++.+.|++++|.++++...+.-.
T Consensus 660 ~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 660 S-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6 565554 556688999999999999877543
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=4.3e-10 Score=94.33 Aligned_cols=288 Identities=11% Similarity=0.058 Sum_probs=202.9
Q ss_pred hcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 7 KNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
..|++..|..++..+.+ | +...|-+-+.....+.++++|..+|.+... ..|+...|.--+..-. . .+..+
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~----~sgTeRv~mKs~~~er--~-ld~~e 668 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS----ISGTERVWMKSANLER--Y-LDNVE 668 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----cCCcchhhHHHhHHHH--H-hhhHH
Confidence 45777777777777632 2 455777777777777788888888877766 3355544433332111 1 44577
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+|.+++++.++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | ....|-.+...--+.|++-.|..++++..-
T Consensus 669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 788887777765 233356677777777778888888777776532 2 445566666666677788888888887766
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.+ +-+...|...|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+.++-....+.+++-. .|......
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVlla 822 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLA 822 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHH
Confidence 53 336777778888888888888888888777763 45555667666666666666666666666553 45566667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
+...+....++++|.+.|.++++.+|+.-.+|..+...+.+.|.-++-.+++....... |.-|..|.
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 77788888999999999999999999998899999999999999888899998887643 34455553
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.3e-13 Score=77.77 Aligned_cols=50 Identities=30% Similarity=0.589 Sum_probs=40.1
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56778888888888888888888888888888888888888888887764
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1e-11 Score=95.58 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (311)
+.+.++|.+.|.+.+|.+.++..++ ..|-..||..|-.+|.+.. + .+.|+.++.+.++. .+-++.......+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~rid-Q--P~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRID-Q--PERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhc-c--HHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 5789999999999999999999988 5677888888888777654 4 88999999888876 3445555667788
Q ss_pred HHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHH
Q 040965 110 LYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
.+...++.++|.++++...+. ++.+..++...|.-.++++-|+.+|+++.+.|+. +...|..+.-+|.-.+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 899999999999999988554 5666777778899999999999999999999976 677888888899999999999
Q ss_pred HHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 187 LELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+.-|.+.+.. --.|+ ..+|..|.......|++..|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+.
T Consensus 378 L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998764 22233 356888888888899999999999887 323455888888888889999999999999999
Q ss_pred hcCCCc
Q 040965 263 ELQPKH 268 (311)
Q Consensus 263 ~~~~~~ 268 (311)
...|.-
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 988874
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=5.5e-10 Score=90.36 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=196.5
Q ss_pred hcCChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 7 KNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
..|++..|.++|++- ..|+..+|++.|+.-.+.+.++.|..+|++..- +.|+..+|.-.... -.+.|....
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarF---E~k~g~~~~ 225 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARF---EEKHGNVAL 225 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHH---HHhcCcHHH
Confidence 457788888888776 467888888888888888888888888888876 67888777665542 223556777
Q ss_pred HHHHHHHHhhc-cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHc-----------------------------------
Q 040965 85 GKQVHGYILRN-EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSM----------------------------------- 127 (311)
Q Consensus 85 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------------------- 127 (311)
+.++|+...+. |- ..+...+.+....=.++..++.|..+|.-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777666543 10 112233333333333444445544444332
Q ss_pred ---------ccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--H-----HHHHHHHH---HHccccHHH
Q 040965 128 ---------VIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--I-----TFVAVLTA---CARAQLVEL 185 (311)
Q Consensus 128 ---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~-----~~~~l~~~---~~~~~~~~~ 185 (311)
++. |-.+|.-.+..-...|+.+...++|++.... ++|-. . .|.-+=.+ -....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 3345666666667789999999999998765 55521 1 12111112 235678889
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLL----GRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+.++++..++- ++-...|+..+--.| .++.++..|.+++... |.-|-..+|...|..-.+.+.+|.+..++++
T Consensus 385 tr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999888852 333345555544443 4678999999999887 8889999999999888899999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.++.+|.+..+|...+..-...|+++.|..+|+-.++..
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 999999999899988888888999999999998776643
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=1.7e-11 Score=89.88 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.+...|.-.|...|+...|..-+++.++. +..+|..+...|.+.|+.+.|.+-|++..+.. +-+-...|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777444 34566677777777777777777777776652 224556666666777
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++++|...|++.+..+...--..+|..+.-+..+.|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777777777766433333456777777777777777777777776 33443 3556666677777777777777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
++++.....+.........|+.-.+.|+.+.+-++=..+...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777655555556666666666777777666665555443
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=5.9e-11 Score=99.71 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcC---CC-CCCCchHHHHHHHHHh-hhhhhcCcchhHHHHHHHHhhc-----c-
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGN---VN-LVRPNEATYVSVLSSC-AGLVNEGGLYLGKQVHGYILRN-----E- 96 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~p~~~~~~~ll~~~-~~~~~~~~~~~a~~~~~~~~~~-----~- 96 (311)
+...+...|...|++++|..+++..++. +. ...|...+ ++..+ ..+.+.+++++|..+|++++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---MLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 5555899999999999999999998763 10 01333333 33211 2333467799999999888763 2
Q ss_pred -CCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc----------ch-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---
Q 040965 97 -IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI----------KD-VCTWNAMISSLASNSREKEALVMFDEMKEK--- 161 (311)
Q Consensus 97 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 161 (311)
.+.-..+++.|...|.+.|++++|...++.+.+ +. ...++.++..+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122357788899999999999999998887621 12 234566777889999999999999986542
Q ss_pred CCCCc----HHHHHHHHHHHHccccHHHHHHHHHHhhccC-----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--
Q 040965 162 GLRAN----EITFVAVLTACARAQLVELGLELFHSMLGKF-----EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-- 229 (311)
Q Consensus 162 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 229 (311)
-..++ ..+++.+...|...|++++|.+++++++... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 4689999999999999999999999987542 1122 2456788889999999999999998776
Q ss_pred ------CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 230 ------PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 230 ------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...|+. .+|..|...|...|+++.|.++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 223444 6788999999999999999999998874
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=1.9e-09 Score=90.62 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
.+|+.-...|.+.+.++-|..+|...++ +.|. ...|..... .-...|..+....++++.+..- +.....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alq----vfp~k~slWlra~~---~ek~hgt~Esl~Allqkav~~~-pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQ----VFPCKKSLWLRAAM---FEKSHGTRESLEALLQKAVEQC-PKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHh----hccchhHHHHHHHH---HHHhcCcHHHHHHHHHHHHHhC-CcchhHHH
Confidence 4788888888899999999999999987 4444 344444433 2233666889999999998874 44566777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.....+-..|++..|..++.++.. .+...|.+-+.....+.+++.|..+|.+... ..|+...|..-+....-.++
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhh
Confidence 778888899999999999998843 3667888888999999999999999998776 47788888888888888999
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
.++|.+++++.++.+ +.-...|..+.+.+.+.++.+.|.+.|..- ..-|+. ..|..|...--+.|.+..|..++++
T Consensus 667 ~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999999753 323457888999999999999999998877 545654 6677777777788999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcccc
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 308 (311)
..-.+|.+...|...+++-.+.|+.+.|..+..+..+.. |..|.-|
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LW 790 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLW 790 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhH
Confidence 999999999999999999999999999999988877653 3445444
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=7.6e-10 Score=94.10 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=197.5
Q ss_pred hhhhhcCChHHHHHHHHHhccc--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh-
Q 040965 3 DGYVKNGDMDSAILLFENMLKR--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN- 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~- 78 (311)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..++.. .|+...|...+..+.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHhhhcc
Confidence 5678899999999999876332 4 456678889999999999999999999984 5888887777766552221
Q ss_pred --cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHH-HHHHHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 --EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE-RAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
....+...++++++...- |.......+.-.+.....+. .+...+..+.... +.+++.+-..|....+..-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 234677788888876653 22222222222222222232 2333334444443 45666666666666666656666
Q ss_pred HHHHHHc----C----------CCCcH--HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcC
Q 040965 155 FDEMKEK----G----------LRANE--ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAG 217 (311)
Q Consensus 155 ~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 217 (311)
+...... + -+|+. .++..+...|-..|++++|+.++++.++. .|+ +..|..-...|-..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCC
Confidence 6665432 1 12343 34566677788999999999999999964 555 577888899999999
Q ss_pred CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCc-------hhHHHHHHHHHhccchhH
Q 040965 218 LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ--PKH-------CGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~ 286 (311)
++.+|.+.++.. ...+ |...-+-.+..+.+.|++++|..++....+.+ |.. .......+.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999988 3343 44555556677889999999999999887644 221 112235678899999999
Q ss_pred HHHHHHHHHHHc
Q 040965 287 RATDLRKAMVEA 298 (311)
Q Consensus 287 ~A~~~~~~m~~~ 298 (311)
.|.+.|..+.+.
T Consensus 323 ~ALk~~~~v~k~ 334 (517)
T PF12569_consen 323 LALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999988877653
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.5e-10 Score=91.09 Aligned_cols=286 Identities=13% Similarity=0.058 Sum_probs=194.2
Q ss_pred hhhhhcCChHHHHHHHHHh--cccc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM--LKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+-|.++|++++|++.|... ..|| +..|.....+|...|+++++.+.-.+.++ +.|+-. -.+++-.......
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE----l~P~Y~--KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE----LNPDYV--KALLRRASAHEQL 196 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh----cCcHHH--HHHHHHHHHHHhh
Confidence 3467889999999999988 4566 78888999999999999999998888877 666632 2233322222235
Q ss_pred CcchhHHHHH------HHHh------------------------h-cc--CCchHHHHHHHHHHHhhc--------CC--
Q 040965 80 GGLYLGKQVH------GYIL------------------------R-NE--IVLSVFMGTALIDLYGKV--------GC-- 116 (311)
Q Consensus 80 ~~~~~a~~~~------~~~~------------------------~-~~--~~~~~~~~~~l~~~~~~~--------g~-- 116 (311)
|+++++..-. +... + .+ +-|+.....+....|... ++
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 5566665421 1100 0 01 113332222222222110 00
Q ss_pred ---HHHHHHHHHHc--------------------ccc-----h------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 117 ---LERAIRVFKSM--------------------VIK-----D------VCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 117 ---~~~A~~~~~~~--------------------~~~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..++.+.+..- ..+ | ..+...-...+.-.|+.-.|..-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 11111111111 000 1 1111111223345688888999999888764
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLG 239 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 239 (311)
..+ ...|..+..+|...++.++....|++..+ +.| ++.+|..-...+.-.+++++|..-|++. .+.| +...|.
T Consensus 357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 333 33377788889999999999999999985 333 4567888888888899999999999998 5566 457777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+.-+..+.+++++++..|++.++..|..+.+|+....++...+++++|.+.|+..++.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 77777788999999999999999999999999999999999999999999999988764
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.4e-10 Score=88.48 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=194.3
Q ss_pred cCChHHHHHHHHHh-----ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH----HHHHHHHhhhhhh
Q 040965 8 NGDMDSAILLFENM-----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT----YVSVLSSCAGLVN 78 (311)
Q Consensus 8 ~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~ 78 (311)
.++...|...+-.+ ...|+.....+.+.+...|+.++|...|+...- +.|+..+ |..|+. .
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~------~ 278 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLG------Q 278 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHH------h
Confidence 34444444444333 233788899999999999999999999999876 4565433 444443 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH---hhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV---CTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|+.+....+...+.... .-+...|-.-+.......+++.|+.+-++.+..+. ..|-.-...+...|++++|.-.|
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 666777777777766543 12223333334445566788888888888765544 44444456788889999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH-HHHHh-cCCHHHHHHHHHhC-CCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV-DLLGR-AGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~ 232 (311)
+...... +.+...|..|+.+|...|++.+|.-.-+...+. +..+..+.+.+. ..+.- -.--++|..++++. .+.
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 9877651 336788999999999999999888877776653 333445555443 22322 23456788888877 667
Q ss_pred CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 233 PDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 233 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
|+- ...+.+...+...|..+.+..++++.+...|+.. ....|++.+...+.+++|++.|......+++.
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 765 5566667778888888889998888888777765 77888888888888888888888777665543
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=8e-13 Score=75.53 Aligned_cols=49 Identities=31% Similarity=0.630 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 74 (311)
||+.+||++|.+|++.|++++|.++|++|.+.| +.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g--~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG--IKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHc
Confidence 688999999999999999999999999999999 9999999999998765
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=1.1e-09 Score=88.09 Aligned_cols=229 Identities=11% Similarity=-0.081 Sum_probs=154.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCch--HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNE--ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
.+..+.++.-+.+++...+ ..|+. ..|..+-. .+...|+.++|...|++.++.. +.+...|+.+...+...|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~---~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 39 TLQQEVILARLNQILASRD-LTDEERAQLHYERGV---LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred chHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 4566778888888886542 33332 22322222 2233677999999999999875 4467899999999999999
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+++|...|++..+ | +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...|.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999843 3 5678888889999999999999999998876 343322222223345678899999999776
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHH--HHHHHHhC-CCC----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSE--AKEFMRSM-PFE----P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
... ..|+... ..+.. ...|+..+ +.+.+.+. ... | ....|..+...+...|++++|...|+++.+.+
T Consensus 192 ~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK--LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh--CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 543 3333222 22333 33455433 33333322 111 2 23578888889999999999999999999999
Q ss_pred CCc-hhHHHHHHHHH
Q 040965 266 PKH-CGRYVVLSNIH 279 (311)
Q Consensus 266 ~~~-~~~~~~l~~~~ 279 (311)
|.+ ...-..++...
T Consensus 267 ~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 267 VYNFVEHRYALLELA 281 (296)
T ss_pred CchHHHHHHHHHHHH
Confidence 754 33333444443
No 67
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=5.6e-10 Score=85.23 Aligned_cols=282 Identities=14% Similarity=0.079 Sum_probs=204.3
Q ss_pred hhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..+.+..+++.|++++..-.++ +....+.+..+|-...++..|...|+++-. ..|...-|...-. ..+.+.
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~A--QSLY~A 91 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQA--QSLYKA 91 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHH--HHHHHh
Confidence 4457788888888888766433 667888999999999999999999999976 5677665543221 233346
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc-cchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
+.+..|+.+...|.+.. ..-..+...-.......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+..
T Consensus 92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 77899999988887641 1111111111222345688999999999987 456777777777788999999999999998
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-------------chh--------hHHHHH-------
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-------------IME--------HYGCVV------- 210 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~l~------- 210 (311)
.+-+---+...|+..+ +..+.|+.+.|++...++.++ |++. |+. .-+.++
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8765444556777766 456779999999999888766 4321 111 112333
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 211 DLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
..+.+.|+++.|.+.+..|+ ...|+.|.+.+.-. -..+++.+..+-++-+++.+|-++.+|..++-.|++..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 34567899999999999993 33567777665422 24567888888888888999988899999999999999999
Q ss_pred HHHHHHHH
Q 040965 287 RATDLRKA 294 (311)
Q Consensus 287 ~A~~~~~~ 294 (311)
-|..++.+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 99888755
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.6e-10 Score=89.25 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=196.6
Q ss_pred hhhhhhcCChHHHHHHHHHhccccHH---HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLKRDVV---SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
...+...|+.++|+..|+....-|+. ......-.+.+.|+.+....+...+.... +-... ..++.+|....
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~--~wfV~~~~l~~- 312 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTAS--HWFVHAQLLYD- 312 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchh--hhhhhhhhhhh-
Confidence 35678899999999999988544332 33333444568899998888888875422 11111 12233333333
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccc-hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIK-DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
..+++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.=.|+.. ..| +..+|.-|+.+|...|.+.+|.-.-
T Consensus 313 ~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 666889999988888775 445666666678888999999999999877 343 7899999999999999999999887
Q ss_pred HHHHHcCCCCcHHHHHHHH-HHH-HccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVL-TAC-ARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
+...+. .+.+..+.+.+. ..| ....--++|.+++++.++ +.|+ ....+.+...+...|....+..++++. ..
T Consensus 392 n~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 392 NWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 776554 344566666553 333 344556899999999884 4665 345667778899999999999999998 77
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.||....+.|...+...+.+++|+..|..+++.+|++..+...|
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 89999999999999999999999999999999999987555443
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.36 E-value=2.8e-09 Score=92.44 Aligned_cols=289 Identities=12% Similarity=0.135 Sum_probs=192.5
Q ss_pred hhhhhcCChHHHHHHHHHh---ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM---LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..|-+.|+.+++...+-.+ .+.|...|..+.....+.|++++|.-+|.++++. .|+. |..+..-...+.+.
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~----~p~n--~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA----NPSN--WELIYERSSLYQKT 254 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCcc--hHHHHHHHHHHHHh
Confidence 4567788888888777555 3347788888888888888888888888888774 3433 22122211222335
Q ss_pred CcchhHHHHHHHHhhccCCchHHHH----HHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMG----TALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 150 (311)
|+...|...|.++.+..++.+..-+ -..+..|...++-+.|.+.++..... +...+++++..+.+...++.
T Consensus 255 G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 255 GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 6678888888887776543332222 22345566666667777776665331 23345555555555555555
Q ss_pred HHHHHHHHHH-------------------------------------------------------------cCCCC--cH
Q 040965 151 ALVMFDEMKE-------------------------------------------------------------KGLRA--NE 167 (311)
Q Consensus 151 a~~~~~~m~~-------------------------------------------------------------~~~~~--~~ 167 (311)
|......+.. ..+.| +.
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~ 414 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV 414 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH
Confidence 5554444433 22222 23
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~ 245 (311)
..|.-+..++...|++..|+.+|..+... ...-+...|-.+..+|...|.+++|.+.|+.. ...|+. ..-.+|...+
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY 493 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence 45677788889999999999999999876 33345678999999999999999999999998 556654 4445566678
Q ss_pred HhcCChhHHHHHHHHHHhcCC---------CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 246 KIHGAVDLCHEVGRRLLELQP---------KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+.|+.++|.+.+..+..-++ +...........+...|+.++=..+-..|...
T Consensus 494 ~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 494 QQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 899999999999999763221 12234556777888899988876666666543
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.4e-09 Score=80.06 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=78.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
|.-.|...|+...|.+-+++..+.. +.+..++..+...|.+.|..+.|.+.|++.++ +.| +..+.|.....+|..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhC
Confidence 4444555555555555555555442 11334455555555555555555555555553 222 233445555555555
Q ss_pred CCHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 217 GLLSEAKEFMRSMPFEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 217 g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|++++|...|++.--.| -..+|..+.-+..+.|+++.|...|++.++.+|+.+.+...+.....+.|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555541111 12344444444445555555555555555555555445555555555555555555555
Q ss_pred HHHHHccC
Q 040965 293 KAMVEAGI 300 (311)
Q Consensus 293 ~~m~~~~~ 300 (311)
++....+.
T Consensus 197 ~~~~~~~~ 204 (250)
T COG3063 197 ERYQQRGG 204 (250)
T ss_pred HHHHhccc
Confidence 55444433
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.33 E-value=3e-10 Score=90.12 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=156.0
Q ss_pred hhhcCChHHHHHHHHHh-cc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENM-LK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
+.-.|++..++.-.+.. .. .+.....-+.+++...|+++.++. +.... -.|.......+...+.. .++
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~---~~~~l~av~~la~y~~~---~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS---SSPELQAVRLLAEYLSS---PSD 81 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT---SSCCCHHHHHHHHHHCT---STT
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC---CChhHHHHHHHHHHHhC---ccc
Confidence 33458888888666511 11 134566778889999998876553 33222 35665555444432221 122
Q ss_pred chhHHHHHHHHhhccCC-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
-+.+..-++.....+.. .+..+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555444433323 33344444456677889999999888765 4556667778888999999999999999876
Q ss_pred cCCCCcHHHHHHHHHH----HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 040965 161 KGLRANEITFVAVLTA----CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-D 234 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 234 (311)
.+ .| .+...+..+ ....+.+..|..+|+++.++ ..+++.+.+.+..++...|++++|.+++++. ...| +
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 52 33 333334433 33344688999999998764 4567778888888888999999999988886 3344 4
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCch
Q 040965 235 ASVLGALLGACKIHGAV-DLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 269 (311)
..+...++......|+. +.+.+.+.++....|+++
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 45666667666777777 667788888888888875
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=1.1e-09 Score=86.89 Aligned_cols=245 Identities=12% Similarity=0.041 Sum_probs=164.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
++-+.-.|++..++.-.+ ... ..|+ ......+.+++.. .|+.+. .+.++.+.. .|.......+...
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~----~~~~~~~e~~~~~~Rs~iA---lg~~~~---vl~ei~~~~-~~~l~av~~la~y 75 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKS----FSPENKLERDFYQYRSYIA---LGQYDS---VLSEIKKSS-SPELQAVRLLAEY 75 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHT----STCHHHHHHHHHHHHHHHH---TT-HHH---HHHHS-TTS-SCCCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccC----CCchhHHHHHHHHHHHHHH---cCChhH---HHHHhccCC-ChhHHHHHHHHHH
Confidence 344566799999987666 222 2232 2222233333333 333443 444444443 6666666666665
Q ss_pred HhhcCCHHHHHHHHHHcc-cc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 111 YGKVGCLERAIRVFKSMV-IK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
+...++-+.++.-+++.. .+ +..........+...|++++|++++... .+.......+..+.+.++++.
T Consensus 76 ~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 76 LSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp HCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred HhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 555466677777776653 22 2333333445677889999999998752 356677778889999999999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
|.+.++.|.+. ..|. +...|+.++.. .+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++
T Consensus 150 A~k~l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999753 4443 44455555443 34799999999999 445777888888889999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhccchh-HHHHHHHHHHHHcc
Q 040965 260 RLLELQPKHCGRYVVLSNIHAGLERW-NRATDLRKAMVEAG 299 (311)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~ 299 (311)
++.+.+|.++.+...++.+....|+. +.+.+++.++....
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99999999999999999998888888 67888888887653
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=4.7e-09 Score=89.39 Aligned_cols=258 Identities=10% Similarity=0.020 Sum_probs=180.7
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
...+...|++++|++.++.-.. .-+|...+.-...- -+.+.|+.++|..+|..+++.+ +.|..-|..+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~--ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAE--LLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3455788999999999988655 45676665544432 2233677999999999999997 446666666776663
Q ss_pred hc-----CCHHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 113 KV-----GCLERAIRVFKSMVIK--DVCTWNAMISSLASNSRE-KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 113 ~~-----g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
-. .+.+...++++++... .......+.-.+..-..+ ..+..++..+...|+++ +|+.+-..|....+.+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 32 2567778888877332 222222222222222223 35566777788888763 5566665666555555
Q ss_pred HHHHHHHHhhccC-------------CCccch--hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHh
Q 040965 185 LGLELFHSMLGKF-------------EVVPIM--EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKI 247 (311)
Q Consensus 185 ~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 247 (311)
-...++....... .-+|+. .++..+...|-..|++++|++++++. ...|+. ..|..-.+.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5555555543221 113443 34466678888999999999999987 556764 666677788999
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.|++++|...++.+..+++.+...-+..+..+.+.|+.++|.+++....+.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999987777888999999999999999998877776
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=1.6e-08 Score=78.91 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=210.8
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHH---HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSI---INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.-.|++..|+.-|...++.|+..|-++ ...|...|+...|+.-+.+.++ ++||-..-. +-.+ ..+.+.|
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle----lKpDF~~AR-iQRg-~vllK~G 120 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE----LKPDFMAAR-IQRG-VVLLKQG 120 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----cCccHHHHH-HHhc-hhhhhcc
Confidence 35567888888888888877776666554 4568888999999999999988 778854432 1122 2333489
Q ss_pred cchhHHHHHHHHhhccCCch--HHH------------HHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLS--VFM------------GTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLA 143 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 143 (311)
.+++|..-|+.+++.....+ ... ....+..+...|+...|++....+.+ | |...|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988753211 111 12234456677899999988887743 2 7788888889999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH----HH---HH------
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY----GC---VV------ 210 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~---l~------ 210 (311)
..|++..|+.-++..-+.. .-+..++..+-..+...|+.+.++...++.++ +.|+...+ .. +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776653 33556666677778889999999999999884 56664322 11 11
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA-----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
......+++.++.+..+.. ...|.. ..+..+..++...+++.+|++...+++..+|++..++.--..+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 1233557777777777665 445652 3345556677889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCC
Q 040965 285 WNRATDLRKAMVEAGIR 301 (311)
Q Consensus 285 ~~~A~~~~~~m~~~~~~ 301 (311)
++.|+.-|+...+.+..
T Consensus 357 YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999988876543
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.9e-09 Score=85.78 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=197.6
Q ss_pred hhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.++.+.. +-...+|-++-.-| +. -|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a~sW~aVg~YY--l~-i~ 326 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKALSWFAVGCYY--LM-IG 326 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCCcchhhHHHHH--HH-hc
Confidence 456778899999999888543 45566667778999999999888888888743 23345665544322 22 46
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
+.++|.+.|.+....+.. -...|-.+.+.|.-.|.-+.|+..+..+-+- ....+.-+.--|.+.+....|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 699999999988766422 2457788999999999999999998876322 222233355668889999999999998
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC-CC---c-cchhhHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF-EV---V-PIMEHYGCVVDLLGRAGLLSEAKEFMRSM--P 230 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 230 (311)
.... .+.|+...+-+.-.....+.+.+|..+|+..+..- .+ . ....+++.|..+|.+.+.+++|+..+++. -
T Consensus 406 A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7764 24477788888777778899999999999877210 01 1 13346888999999999999999999998 3
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 231 FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.+.+..++.++.-.|...|+++.|.+.|.+.+.+.|++..+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 34577888888889999999999999999999999998633
No 76
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.9e-08 Score=81.72 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=86.4
Q ss_pred cCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhhhcCcch
Q 040965 8 NGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~ 83 (311)
+++++.|..+|++.+.- +...|--.+..-.++.++..|..++++.... -|-.. .|--.+. .-...|++.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----lPRVdqlWyKY~y---mEE~LgNi~ 158 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----LPRVDQLWYKYIY---MEEMLGNIA 158 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----cchHHHHHHHHHH---HHHHhcccH
Confidence 56777888888887443 5556666677777777777777777777652 33221 1111111 111145577
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
.|.++|+.-.+- .|+...|++.++.=.+-..++.|.++++.. ..|++.+|--....-.+.|+...|..+|+...
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 777777666543 567777777777777777777777777765 44555555555555555565555555555544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-08 Score=85.60 Aligned_cols=290 Identities=17% Similarity=0.140 Sum_probs=178.6
Q ss_pred hhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH-HHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV-LSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~ 79 (311)
++.+.|+++.+.+.|++...- ....|+.+...|...|.-..|..++++..... -.|+..+...+ -..|... .
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~s~~Lmasklc~e~--l 407 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDISVLLMASKLCIER--L 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcchHHHHHHHHHHhc--h
Confidence 456788899999999887543 45689999999999999999999998876533 22433332222 2222111 1
Q ss_pred Ccch--------------------------------------------------hHHHHHHHHhhccCCchHHHHHHHHH
Q 040965 80 GGLY--------------------------------------------------LGKQVHGYILRNEIVLSVFMGTALID 109 (311)
Q Consensus 80 ~~~~--------------------------------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (311)
+.++ ++.+.+++..+.+.. |+.+...+.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lal 486 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLAL 486 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 1133 333444444433321 1122122333
Q ss_pred HHhhcCCHHHHHHHHHHccc----chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCC------------------Cc
Q 040965 110 LYGKVGCLERAIRVFKSMVI----KDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLR------------------AN 166 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~------------------~~ 166 (311)
-|+..++++.|.+..++... .+...|..+.-.+...+++.+|+.+.+..... |.. -.
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 35555666666666665522 26677777777777788888888877765432 110 00
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 040965 167 EITFVAVL------------------------------------------------------------------------ 174 (311)
Q Consensus 167 ~~~~~~l~------------------------------------------------------------------------ 174 (311)
..|...++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 01111111
Q ss_pred -----------HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHH
Q 040965 175 -----------TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGAL 241 (311)
Q Consensus 175 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 241 (311)
..+.+.++.++|...+.+..+. .+.....|......+...|+..+|.+.|... -+.|+. .+..++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 1122222233333333333211 1112233444445556667777777777666 566754 778889
Q ss_pred HHHHHhcCChhHHHH--HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 242 LGACKIHGAVDLCHE--VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...+.+.|+...|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|+...+...
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 999999999888888 99999999999999999999999999999999999998877543
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=8.8e-08 Score=79.61 Aligned_cols=289 Identities=11% Similarity=0.002 Sum_probs=177.4
Q ss_pred hhhcCChHHHHHHHHHhcc---c--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhh-
Q 040965 5 YVKNGDMDSAILLFENMLK---R--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGL- 76 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~---~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~- 76 (311)
+...|+.+.+...+..... + + ..........+...|++++|.+.+++..+. .|+.. .+.. ...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD----YPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH-hHHHHHhc
Confidence 4455677777666666521 1 2 223333455667889999999999999874 45443 3221 1011111
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
...+..+.+.+.+.... ...+........+...+...|++++|+..+++.... +...+..+...+...|++++|..
T Consensus 91 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 91 DFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 11344556666655421 122223455556778889999999999999998433 56678888999999999999999
Q ss_pred HHHHHHHcCC-CCcH--HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH-H--HHHHHHHhcCCHHHHHHH--
Q 040965 154 MFDEMKEKGL-RANE--ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-G--CVVDLLGRAGLLSEAKEF-- 225 (311)
Q Consensus 154 ~~~~m~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~-- 225 (311)
.+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++..+...|..+.+.++
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~ 249 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWED 249 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHH
Confidence 9999876532 2232 345678888999999999999999986431211222111 1 223333344433333332
Q ss_pred H-HhC-CC-CCCcchHH--HHHHHHHhcCChhHHHHHHHHHHhcCCC---------chhHHHHHHHHHhccchhHHHHHH
Q 040965 226 M-RSM-PF-EPDASVLG--ALLGACKIHGAVDLCHEVGRRLLELQPK---------HCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 226 ~-~~~-~~-~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
+ ... .. ......+. ....++...|+.+.|...++.+....-. ..........++...|++++|.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~ 329 (355)
T cd05804 250 LADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALEL 329 (355)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence 1 111 11 11122232 4455678899999999999988752211 122333445567799999999999
Q ss_pred HHHHHHcc
Q 040965 292 RKAMVEAG 299 (311)
Q Consensus 292 ~~~m~~~~ 299 (311)
+.+.....
T Consensus 330 L~~al~~a 337 (355)
T cd05804 330 LGPVRDDL 337 (355)
T ss_pred HHHHHHHH
Confidence 98887643
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=1.3e-09 Score=94.30 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=134.3
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc
Q 040965 49 FKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128 (311)
Q Consensus 49 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 128 (311)
+-.+...| +.|+..||..++. +++..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 13 la~~e~~g--i~PnRvtyqsLia---rYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 13 LALHEISG--ILPNRVTYQSLIA---RYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHHHhc--CCCchhhHHHHHH---HHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 34444455 5566666666654 333355555555 5555555555555555555555555555555443
Q ss_pred cchHhhHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHH-cCCCCcHHHHHHHHHHHHccccHH
Q 040965 129 IKDVCTWNAMISSLASNSREKE-----------------------ALVMFDEMKE-KGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~-----------------------a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
.|.+.+|+.|..+|...||... ...++..+.- .+.-||..+ ++.-..-.|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4555566666666666655433 2222221110 111222221 222234456666
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGR-AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+++++..+-......|... .++-+.. ...+++-..+.+...-.|++.+|..++..-...|+++.|..++.+|.+
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66666655543211222221 2332222 334555555555553369999999999999999999999999999998
Q ss_pred cC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcc
Q 040965 264 LQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 264 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
.+ |-....|..|+-+ .++..-+..+++.|.+.|+.|+...
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 66 4444334444433 7888889999999999999987653
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=89.43 Aligned_cols=217 Identities=14% Similarity=0.045 Sum_probs=173.5
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- +....-.|.-.|...|.-.+|.+.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3888999999999999886 447889999999999999999999999888444 566777788889999999999999
Q ss_pred HHHHHHcCCCC--------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 155 FDEMKEKGLRA--------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 155 ~~~m~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
++.......+- +...-.. ..+.......+..++|-++....+..+|+.++..|.-.|--.|++++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 99886542110 0000000 1233344455666777666665465577778999999999999999999999
Q ss_pred HhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 227 RSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 227 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+.+ .++| |...|+.|...++...+.++|...|++++++.|.-..+...|+-+|...|.+++|.+.|-+.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998 6677 5588999998999999999999999999999999888999999999999999999999877654
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.21 E-value=3.9e-09 Score=95.50 Aligned_cols=210 Identities=14% Similarity=0.149 Sum_probs=173.1
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
|++.+... |-+...|-..|......+++++|.++++++... -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 445678888999999999999999999998433 235677788777778888999999999887
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---Ccc
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---DAS 236 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~ 236 (311)
.- . ....|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-+.|.++++++ ..-| ...
T Consensus 1526 yc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 52 2 345788999999999999999999999999866 45568999999999999999999999887 3333 344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
...-.+..-.+.|+.+.+..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 4555666667899999999999999999999888999999999999999999999999999888654
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=1.7e-07 Score=77.90 Aligned_cols=269 Identities=12% Similarity=0.029 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...|..+...+...|+.+.+.+.+.+..+..+ ..++...... +.+..... .|+++++.+.+++..+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~-~~a~~~~~-~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAH-VEALSAWI-AGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHH-HHHHHHHH-cCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 45677778888888999988887777665431 2233322222 23322333 788999999999998874 33444443
Q ss_pred H---HHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 106 A---LIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 106 ~---l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
. +.......+....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2 222222345566666666553222 23344556678889999999999999998874 3456778888889999
Q ss_pred cccHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH------HHHHHHHhcCC
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIM--EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLG------ALLGACKIHGA 250 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~l~~~~~~~g~ 250 (311)
.|++++|...+++.+......|+. ..|..+...+...|++++|.+++++. ...|...... .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999988642222332 34557888999999999999999997 3233222221 22333445555
Q ss_pred hhHHHHH--HHHH-HhcCCCch--hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 251 VDLCHEV--GRRL-LELQPKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 251 ~~~a~~~--~~~~-~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.+.+.++ +... ....|... ........++...|+.++|...++.+....
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4444443 2111 11112221 122356777889999999999999987643
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.17 E-value=6e-09 Score=81.21 Aligned_cols=182 Identities=10% Similarity=-0.045 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---D---VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--ITFV 171 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 171 (311)
....+..++..+.+.|++++|...|+++... + ..++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566677888888899999999999887432 2 245677788888999999999999998875321111 2455
Q ss_pred HHHHHHHcc--------ccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHH
Q 040965 172 AVLTACARA--------QLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242 (311)
Q Consensus 172 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 242 (311)
.+..++... |+.+.|.+.++.+.+. .|+. ..+..+.... ....... .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 555556554 7788888888888754 3432 2222221110 0111000 0112455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..+...|++++|...++++.+..|++ ...+..++.++...|++++|..+++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66889999999999999999876654 4688899999999999999999999887653
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=1.5e-06 Score=73.54 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
|-.+-+..++++-++-++..-+..|..+++.+++++|.+.+......... .+.+...|.-+-...+...+.+.--.
T Consensus 152 ~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 33344555555554445555555666666777777777766666543210 12233334333333233222222223
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
...+++.+...-..-=...|++|.+.|.+.|.+++|..+|++.
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344444443321122467899999999999999999999876
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=1.3e-06 Score=73.88 Aligned_cols=283 Identities=13% Similarity=0.105 Sum_probs=147.4
Q ss_pred hhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHH---HHHHHhhhhhhc
Q 040965 6 VKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV---SVLSSCAGLVNE 79 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~---~ll~~~~~~~~~ 79 (311)
...|+-++|....+..... +.+.|+.+.-.+....++++|++.|..+.. +.||....- +++. .+ -
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN~qilrDlslLQ--~Q---m 122 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDNLQILRDLSLLQ--IQ---M 122 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH--HH---H
Confidence 4567788888888777544 457899998888889999999999999987 445543321 1111 11 2
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM-------------------------------- 127 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------- 127 (311)
++++.......+..+.. +.....|..+..++.-.|+...|..++++.
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 22444444444443331 112334444444444445555554444433
Q ss_pred ----------ccc--hH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHccccHHHHH-HHHHH
Q 040965 128 ----------VIK--DV-CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV-LTACARAQLVELGL-ELFHS 192 (311)
Q Consensus 128 ----------~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~ 192 (311)
... |. ..-.+-...+.+.+++++|..++..+... .||...|... ..++.+..+.-++. .+|..
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 11 11223344556677777777777777765 4554444433 33343233333333 55554
Q ss_pred hhccCCC--cc--------c--------------------hhhHHHHHHHHHhcCCHHH----HHHHHHhC-C-------
Q 040965 193 MLGKFEV--VP--------I--------------------MEHYGCVVDLLGRAGLLSE----AKEFMRSM-P------- 230 (311)
Q Consensus 193 ~~~~~~~--~~--------~--------------------~~~~~~l~~~~~~~g~~~~----A~~~~~~~-~------- 230 (311)
..+.+.. .| + +.++..+...|-.-...+- +..+...+ +
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4322000 00 0 0011111111111110000 11111111 0
Q ss_pred -----CCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 231 -----FEPDASV--LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 231 -----~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
-+|.... +..++..+-..|+++.|..+++.++...|.-+..|..=++.+...|..++|..++++.++.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 1233322 334555677777888888888877777777666777777777777888887777777766543
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=3.1e-08 Score=74.42 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=83.7
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
+-.|...|+++.+....+.+..+. ..+...++.+++...++...+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666677666544433222221 01122455566666666655542 335666666666666777777777
Q ss_pred HHHHHhhccCCCccchhhHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGL--LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
..|++..+. .+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|...|+++.
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666643 12234455555554 345555 36666666666 3344 33455555556666677777777777766
Q ss_pred hcCCCch
Q 040965 263 ELQPKHC 269 (311)
Q Consensus 263 ~~~~~~~ 269 (311)
+..|++.
T Consensus 172 ~l~~~~~ 178 (198)
T PRK10370 172 DLNSPRV 178 (198)
T ss_pred hhCCCCc
Confidence 6665544
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.4e-07 Score=74.49 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=164.2
Q ss_pred hhhhcCChHHHHHHHHHhc---cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENML---KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
+.+..|+++.|+..|-+.+ ++|.+.|+.-..+|++.|++++|++--.+..+ +.|+. ..|...-.++. + .
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~----l~p~w~kgy~r~Gaa~~--~-l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR----LNPDWAKGYSRKGAALF--G-L 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh----cCCchhhHHHHhHHHHH--h-c
Confidence 4567899999999998873 33677888888889999999998887777766 66764 44554444322 2 5
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc---------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV--------------------------------------------- 114 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------------------- 114 (311)
|++++|+..|.+-++.. +.|...++.+.+++...
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 66888888888877764 33555555555554111
Q ss_pred ------CCHHHHHHHHHHc----------------ccc------------h----------HhhHHHHHHHHHcCCCHHH
Q 040965 115 ------GCLERAIRVFKSM----------------VIK------------D----------VCTWNAMISSLASNSREKE 150 (311)
Q Consensus 115 ------g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~~~~~~ 150 (311)
.++..|...+... ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0011111111110 000 0 0012233444444455555
Q ss_pred HHHHHHHHHHc---------------------------------CCCCcHHHHH-------HHHHHHHccccHHHHHHHH
Q 040965 151 ALVMFDEMKEK---------------------------------GLRANEITFV-------AVLTACARAQLVELGLELF 190 (311)
Q Consensus 151 a~~~~~~m~~~---------------------------------~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~ 190 (311)
|.+.+...... |.. ...-|+ .+..++.+.++.+.|+.+|
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 55555444332 111 011122 1223444556666777766
Q ss_pred HHhhccCCCccchhhH-------------------------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 191 HSMLGKFEVVPIMEHY-------------------------GCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
.+.+.. ...|+...- -.-...+.+.|++..|...|.++ ...| |...|..-.-
T Consensus 322 ~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA 400 (539)
T ss_pred HHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 665543 222221110 01123355667777777777776 3334 4566666767
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+|.+.|.+..|..-.+..++++|+....|..=+.++....+|++|.+.|++-++.+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777776677766777777777777777777766654
No 88
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.4e-06 Score=65.86 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=92.1
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+.. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 33444443333333333333455666666776666666522 22222223344556666666666666666532 34
Q ss_pred HHHHHHHHHHH----ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHH
Q 040965 168 ITFVAVLTACA----RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGAL 241 (311)
Q Consensus 168 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 241 (311)
.|.+-|..++. ..+.+..|.-+|+++.++ .+|++.+.+....++...|++++|..+++.. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 45554444433 344566666666666542 4566666666666666666777776666666 322344444444
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhcCCCch
Q 040965 242 LGACKIHGAV-DLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 242 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 269 (311)
+-.-...|.. +...+.+.++....|.++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444444443 333455556555555553
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=5.7e-08 Score=75.74 Aligned_cols=171 Identities=17% Similarity=0.076 Sum_probs=114.1
Q ss_pred hhhhcCcchhHHHHHHHHhhccCC-c-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccch---H---hhHHHHHHHHHcC-
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIV-L-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKD---V---CTWNAMISSLASN- 145 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~- 145 (311)
.+.+.|+++.|...++++.+..+. | ....+..+..++.+.|++++|+..++++.+.+ . .++..+..++...
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc
Confidence 333478899999999999886432 1 12467778999999999999999999984432 2 2455566666654
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 146 -------SREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 146 -------~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
|++++|.+.++.+.+. .|+ ...+..+..... ... ... .....+...|.+.|
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~~--------~~~~~~a~~~~~~g 180 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RLA--------GKELYVARFYLKRG 180 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HHH--------HHHHHHHHHHHHcC
Confidence 7899999999999876 343 333322221110 000 000 01224566778888
Q ss_pred CHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 218 LLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++++|...+++. ...|+ ...+..+..++...|++++|..+++.+....|
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888877 33333 35667777888888888888888887766554
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.6e-06 Score=71.37 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=66.8
Q ss_pred HHHHHHHHccccHHHHHHHHH--------HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCcch
Q 040965 171 VAVLTACARAQLVELGLELFH--------SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-----PFEPDASV 237 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~ 237 (311)
...+......|+++.|.+++. .+.+- +..|. +...++..+.+.++-+.|..++.+. .-.+....
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 333444556667777776666 33322 33333 3444555566666555555554443 11122222
Q ss_pred HHHHH----HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 238 LGALL----GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 238 ~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
...++ ..-.+.|+-++|..+++++.+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22222 2334567788888888888887777777777777777766 4555655443
No 91
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.9e-07 Score=68.82 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=155.3
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
++-+.-.|.+..++..-............+...|.+.+ .++ .. ......+.... .|.......+.....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~rayl----Alg---~~---~~~~~eI~~~~-~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYL----ALG---QY---QIVISEIKEGK-ATPLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHH----Hcc---cc---ccccccccccc-CChHHHHHHHHHHhh
Confidence 34455667777777666665443111222333333333 222 11 22223333333 333444443444433
Q ss_pred hcCCHHHHHH-HHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 113 KVGCLERAIR-VFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 113 ~~g~~~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
.-++.+.-.. +.+.+..+ +......-...|+..|++++|++...... +......=+..+.+..+.+-|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 33333222 22333334567889999999999987622 2223333345577889999999
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
+.+++|.+- . +..|.+.|..++.+ .+.+..|.-+|++| +..|+..+.+....++...|++++|..+++.+
T Consensus 158 ~~lk~mq~i---d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQI---D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHcc---c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 999999742 3 44577777777764 45799999999999 47899999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHhccchhHHH-HHHHHHHHH
Q 040965 262 LELQPKHCGRYVVLSNIHAGLERWNRA-TDLRKAMVE 297 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 297 (311)
+..+++++.+...++.+-...|+-.++ .+.+.++..
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999888887777776554 445555543
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=2.8e-06 Score=79.63 Aligned_cols=292 Identities=10% Similarity=-0.032 Sum_probs=186.5
Q ss_pred hhhcCChHHHHHHHHHhcc---c-----c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH--HHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK---R-----D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT--YVSVL 70 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~---~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~--~~~ll 70 (311)
+...|++++|...+..... . + ......+...+...|++++|...+++..+.. ...+... .....
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 4567889998888876621 1 1 1122334455678999999999999987632 1112111 11111
Q ss_pred HHhhhhhhcCcchhHHHHHHHHhhc----cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhh
Q 040965 71 SSCAGLVNEGGLYLGKQVHGYILRN----EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCT 134 (311)
Q Consensus 71 ~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~ 134 (311)
.+.. ....|++++|...+++.... |. .....+...+...+...|++++|...+++.... ....
T Consensus 497 lg~~-~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 497 LGEV-HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 1111 22378899999999887653 21 112345566778888999999999998876221 1223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccchhh-H
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEK--GLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPIMEH-Y 206 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~-~ 206 (311)
+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.+.|...++...... +....... .
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445566677789999999999887543 1112 23445556667888999999999998875321 11111101 0
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCcch----HHHHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHH
Q 040965 207 -GCVVDLLGRAGLLSEAKEFMRSMPF-E-PDASV----LGALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYV 273 (311)
Q Consensus 207 -~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~ 273 (311)
...+..+...|+.+.|.+++..... . ..... +..+..++...|+.++|...++++.... +....+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1122445568999999999877621 1 11111 2345567888999999999999988632 11234566
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.+..++.+.|+.++|...+.+..+..
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78888999999999999999988754
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=3.4e-07 Score=82.13 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..|+..+...+++++|.++.+...+ ..|+...+...... .... .++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~-l~~q-~~~~~~~~lv---------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGI-LSLS-RRPLNDSNLL---------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHH-HHHh-hcchhhhhhh----------------
Confidence 667899999999999999999999998877 56777665554443 1111 3222222222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc--chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.++.......++.-...+...+.. .+...+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 344444444444333333333321 244467778888888888888888888888775 33677788888888877 8
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHH---HHH--hcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCChhH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVD---LLG--RAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
+++|.+++.++... ..+..-|+.+.. -++ ...+++.-.++.+.+ +..--+.++..+...|...+++++
T Consensus 165 L~KA~~m~~KAV~~---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYR---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHH---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 88888888777643 111111111111 111 112222222222222 222333445555677788889999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+..+++.+++.+|.+..+...++.+|. +++.+ ...|++.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 999999999999999889989999887 44444 3344433
No 94
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.97 E-value=1.5e-07 Score=82.15 Aligned_cols=237 Identities=18% Similarity=0.111 Sum_probs=156.5
Q ss_pred ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchH
Q 040965 22 LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV 101 (311)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 101 (311)
+.||.++|..+|.-|+..|+.+.|- +|.-|.-+. .+.+...++.++.+... .++.+.+. .|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~---And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKE---ANDAENPK-----------EPLA 83 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccc---cccccCCC-----------CCch
Confidence 5788999999999999999999998 999888777 77888889888875443 33344433 6788
Q ss_pred HHHHHHHHHHhhcCCHHH---HHHHHHHcccc-------hHhhH---------------HHHHHHHHcCCCHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLER---AIRVFKSMVIK-------DVCTW---------------NAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~-------~~~~~---------------~~l~~~~~~~~~~~~a~~~~~ 156 (311)
.+|..|...|...||+.. +.+.+..+... ...-| ...+.-..-.|.|+.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999654 33322222110 01111 122233334466666666665
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCC
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEP 233 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p 233 (311)
.+...... .++..++.-+.....+ ..++......-.+ .|++.+|..++++-...|+.+.|..++.+| |++-
T Consensus 164 ~~Pvsa~~---~p~~vfLrqnv~~ntp--vekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN---APFQVFLRQNVVDNTP--VEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCccccc---chHHHHHHHhccCCch--HHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 44321100 0111134444443332 2333333322213 689999999999999999999999999999 6666
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCchhHHHHHHHHHhccchh
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 285 (311)
+..-|..|+-+ .++...++.+++-|.+. .|++. ++...+..+...|..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se-T~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE-TQADYVIPQLSNGQT 287 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc-hhHHHHHhhhcchhh
Confidence 77777777655 78888888898888874 46654 777666666665553
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=9.8e-08 Score=79.38 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=103.0
Q ss_pred hhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
+.+.|++.+|.-.|+..++. +...|--|......+++-..|+..+.++.+ +.|+.... |+.....+.+.|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~----LdP~Nlea--LmaLAVSytNeg~ 368 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE----LDPTNLEA--LMALAVSYTNEGL 368 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh----cCCccHHH--HHHHHHHHhhhhh
Confidence 55677777777777766433 445777777777777777777777777766 45554432 2222223333444
Q ss_pred chhHHHHHHHHhhccCCc--------hHHHHHHHHHHHhhcCCHHHHHHHHHHc-----ccchHhhHHHHHHHHHcCCCH
Q 040965 82 LYLGKQVHGYILRNEIVL--------SVFMGTALIDLYGKVGCLERAIRVFKSM-----VIKDVCTWNAMISSLASNSRE 148 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 148 (311)
-..|.+.++.-+...++- +...-+. ..+.....+....++|-++ .+.|+..+..|.-.|-..|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 556666665554432110 0000000 0111112222333333333 113444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 149 KEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
++|.+.|+..+.. .| |..+||.|...+....+.++|+..|.+++ .+.|+ +.+...|.-+|...|.+.+|.+.|
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 5555555555443 23 44555555555555555555555555555 23443 233333444455555555555444
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=8.5e-08 Score=68.27 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
.++++..+. .|+. +......+...|++++|...|+.+... -+.+...+..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3432 444566677778888888888777643 2335566777777777888888888888777 43
Q ss_pred CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 232 EP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 232 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.| +...+..+..++...|++++|...|+++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4566667777777788888888888888888888776665554443
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.93 E-value=1.1e-05 Score=68.49 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccch-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----------CC
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKD-------VCTWNAMISSLASNSREKEALVMFDEMKEK-----------GL 163 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----------~~ 163 (311)
..|..+...|-..|+++.|..+|++..+-+ ..+|-.....=.+..+++.|.++++..... +.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 344556666666777777777777663331 234444445555666666676666654321 01
Q ss_pred CC------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCC
Q 040965 164 RA------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-F-EPD 234 (311)
Q Consensus 164 ~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~-~p~ 234 (311)
++ +...|...++..-..|-++....+++++++-.-..|- ........+..+.-++++.++|++- . + .|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 11 1123444444444556666666667666643111222 2222223344566778888888776 2 2 234
Q ss_pred c-chHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCch--hHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 235 A-SVLGALLGACKI---HGAVDLCHEVGRRLLELQPKHC--GRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 235 ~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+ ..|+..+.-+.+ ....+.|..+|+++++.-|+.. ..|......-.+.|....|+.++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 455555544332 2367899999999998776532 12333334444567778888888774
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=3.1e-08 Score=70.54 Aligned_cols=110 Identities=13% Similarity=-0.027 Sum_probs=93.7
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..++++.++ ..|+. +..+...+...|++++|.+.|+.. ...| +...+..+...+...|++++|...|+++.+.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666663 45653 556788889999999999999998 5555 5577788888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+|+++.++..++.++...|++++|...|+...+....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999886554
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=4.2e-07 Score=68.55 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44445555566666666665554322 122334444466666666777777777766654 345566666666666777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|++++|..-|.+. .+.|+ ....+.+.-.+.-.|+.+.|..++.+.....+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666665 44443 34455666666666777777777766666555555566666666666677666666543
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=4.7e-07 Score=68.09 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=98.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
..|...|+++.+....+.+.. |. ..+...++.+++...++..++. -+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456777777776544432211 11 0122356667777777776653 344566777777888888888
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 220 SEAKEFMRSM-PFEP-DASVLGALLGA-CKIHGA--VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 220 ~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
++|...|++. ...| +...+..+..+ +...|+ .++|..+++++++.+|++..++..++..+.+.|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888777 4455 34555555554 355566 47888888888888888777888888888888888888888888
Q ss_pred HHHccCC
Q 040965 295 MVEAGIR 301 (311)
Q Consensus 295 m~~~~~~ 301 (311)
+.+...+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 7776554
No 101
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=2.7e-06 Score=68.67 Aligned_cols=211 Identities=11% Similarity=-0.017 Sum_probs=117.6
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC--HHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSR--EKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~ 155 (311)
.++|+.+..++++.. +-+..+|+....++...| ++++++..++++... +..+|+.-...+.+.|+ .++++.++
T Consensus 53 serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 444555555444432 122334444444444444 355666666555322 33344444333434443 24566666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CC----HHHHHHHHHh
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GL----LSEAKEFMRS 228 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~ 228 (311)
+++.+.. +-+..+|.....++...|+++++++.++++++. + .-|...|+.....+.+. |. .+++.++..+
T Consensus 132 ~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 132 RKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 6666553 225666666666666667777777777777654 1 22334555444443333 22 2345555544
Q ss_pred C-CCCC-CcchHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc------------------h
Q 040965 229 M-PFEP-DASVLGALLGACKIH----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE------------------R 284 (311)
Q Consensus 229 ~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~ 284 (311)
+ ...| |...|+.+...+... +...+|...+.++...+|.++.+...|++.|+... .
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 4 4444 456677666666552 34566888888887778888878888888887532 2
Q ss_pred hHHHHHHHHHHH
Q 040965 285 WNRATDLRKAMV 296 (311)
Q Consensus 285 ~~~A~~~~~~m~ 296 (311)
.++|.++++.+.
T Consensus 289 ~~~a~~~~~~l~ 300 (320)
T PLN02789 289 STLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHH
Confidence 367888888874
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=3.1e-09 Score=54.65 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=28.2
Q ss_pred ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
+|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888887
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.6e-06 Score=78.05 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
...|-..|......++.++|.++.++++.. +.+. ..-.|.++.......--|.-+...++|+++.+.. ....+
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445666666666666777777776666543 2221 1112222211101111222344455555554432 11234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN---EITFVAVLTAC 177 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~ 177 (311)
|..|...|.+.+.+++|.++++.|.+. ....|...+..+.++++-+.|..++.+..+. -|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 455555555555555555555555333 3345555555555555555555555554443 222 12222333334
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+.|+.+++..+|+..+..+ +--...|+..++.-.++|+.+.+..+|++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 45555555555555555431 112234555555555555555555555554
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=4.5e-09 Score=54.04 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667667777777777777777777766665
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=8.2e-06 Score=64.21 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH-H
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-M 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 103 (311)
++.-.-.+.+.+...|++..|+..|....+ -|+..|.++..-...+.-.|+-..|+.-+.+.++. +||-. .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 455566788899999999999999999965 34445555554333333356677788888888775 45532 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccchH------h------------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIKDV------C------------TWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
...-...+.+.|.++.|+.=|+.+...++ . .....+..+...|+...|++....+.+. .+.
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W 187 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPW 187 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence 22335678899999999999998843311 1 1122344556789999999999999886 244
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHH----
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGA---- 240 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---- 240 (311)
|...|..-..+|...|++..|+.-++.+.+- ...+..++--+-..+...|+.+.++...++- ++.||...+-.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 8888888899999999999999888887643 2334556666777888999999998887775 77888744322
Q ss_pred H-------H--HHHHhcCChhHHHHHHHHHHhcCCCch----hHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 241 L-------L--GACKIHGAVDLCHEVGRRLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 241 l-------~--~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
| - ......+++.++....+...+..|..+ ..+..+..++...|++.+|++.-.+..+.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1 1 123567888899999999998888732 23446777888899999999988888764
No 106
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.2e-06 Score=64.48 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=81.7
Q ss_pred hhhcCChHHHHHHHHHhcccc---H-HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 5 YVKNGDMDSAILLFENMLKRD---V-VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
+....++..|+.+++.-...+ . .+---+..++.+.|++++|+..|.-+.+.. .|+...+..+..+ ..- .|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc--~Fy-Lg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACC--KFY-LG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHH--HHH-HH
Confidence 455678888888887763221 1 122224567788999999999999888754 4444444333322 222 33
Q ss_pred cchhHHHHHHHHhhccC-------------------------CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--hHh
Q 040965 81 GLYLGKQVHGYILRNEI-------------------------VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--DVC 133 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 133 (311)
.+.+|..+-....+... ..+..-..+|.+.....-.+++|++++.++... .-.
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 36666665544432210 001111122333333344566677777666333 222
Q ss_pred hHHH-HHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 134 TWNA-MISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 134 ~~~~-l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..|. +.-+|.+..-++.+.++++--.+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 3332 334566777777777777766554
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1.3e-05 Score=75.16 Aligned_cols=292 Identities=9% Similarity=-0.010 Sum_probs=181.4
Q ss_pred hhcCChHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC----CCchHHHHHHHHHhhhhh
Q 040965 6 VKNGDMDSAILLFENMLK----RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV----RPNEATYVSVLSSCAGLV 77 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~ 77 (311)
...|+++.+..+++.+.. .++.........+...|++++|...+......-... .|....-...+.+.....
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345666666666665521 122233344556678899999999998875421001 111111111122222223
Q ss_pred hcCcchhHHHHHHHHhhccCCch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHc
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLAS 144 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~ 144 (311)
.|++++|...+++..+.-...+ ....+.+...+...|++++|...+++.... ...++..+...+..
T Consensus 465 -~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 -DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred -CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 7889999999988776321112 234466677788899999999999887321 12345566778888
Q ss_pred CCCHHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccchhhHHHHHHHHH
Q 040965 145 NSREKEALVMFDEMKEK----GLR--A-NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 214 (311)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++..... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886542 211 1 23344555666778899999999998875421 11112334555667788
Q ss_pred hcCCHHHHHHHHHhC----CCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCchh----HHHHHHHHHhc
Q 040965 215 RAGLLSEAKEFMRSM----PFEPDASVLG-----ALLGACKIHGAVDLCHEVGRRLLELQPKHCG----RYVVLSNIHAG 281 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 281 (311)
..|++++|.+.+++. ........+. ..+..+...|+.+.|..++.......+.... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 999999999888776 1111111111 1123345688999999998776543222211 24567788899
Q ss_pred cchhHHHHHHHHHHHHc
Q 040965 282 LERWNRATDLRKAMVEA 298 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~ 298 (311)
.|++++|...+++....
T Consensus 704 ~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 704 LGQFDEAEIILEELNEN 720 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 108
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=1.1e-05 Score=65.29 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
++..+-..+...++.++|+.+.+++++ +.|+..+ |+..-.++..+++ .+++++..++++.+.. +.+..+|+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~n-pknyqaW~~ 111 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR----LNPGNYTVWHFRRLCLEALDA--DLEEELDFAEDVAEDN-PKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHC-CcchHHhHH
Confidence 455556666778899999999999987 5676554 3322222222221 3788999999988876 345566776
Q ss_pred HHHHHhhcCCH--HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc-
Q 040965 107 LIDLYGKVGCL--ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA- 180 (311)
Q Consensus 107 l~~~~~~~g~~--~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~- 180 (311)
....+.+.|+. +++..+++++... +..+|+....++...|+++++++.++++.+.+.. +...|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 65556666653 6778888777443 6678888888888889999999999999887543 556666665555443
Q ss_pred --cc----HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc
Q 040965 181 --QL----VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA----GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH 248 (311)
Q Consensus 181 --~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 248 (311)
|. .+....+..+++.. .+-|...|+.+...+... ++..+|.+.+.+. ...| +......|+..|...
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 22 24677777677653 233556787777777663 4456688887776 3344 445666677777642
Q ss_pred C------------------ChhHHHHHHHHHHhcCCCchhHHH
Q 040965 249 G------------------AVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 249 g------------------~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
. ..++|.++++.+.+.+|-...-|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 269 LQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 2 235677777777555665443333
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1.1e-06 Score=78.05 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=118.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGC 208 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 208 (311)
++..+..|.....+.|.+++|..+++...+. .| +......+...+.+.+++++|+...++.+.. .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 5778888888899999999999999988876 55 4567777888899999999999999998853 44 4456677
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
+..++.+.|++++|.++|+++ .-.|+ ..++.++...+...|+.++|...|+++.+...+....|+.++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 788888999999999999998 22343 577788888888999999999999999886655445555443 2334
Q ss_pred HHHHHHHHHHHc
Q 040965 287 RATDLRKAMVEA 298 (311)
Q Consensus 287 ~A~~~~~~m~~~ 298 (311)
.-..+++++.-.
T Consensus 234 ~~~~~~~~~~~~ 245 (694)
T PRK15179 234 ADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHcCcc
Confidence 445555555433
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=6.3e-06 Score=65.12 Aligned_cols=284 Identities=13% Similarity=0.067 Sum_probs=170.9
Q ss_pred CChHHHHHHHHHhcccc--HHHHH-HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh--hhhhcCcch
Q 040965 9 GDMDSAILLFENMLKRD--VVSWT-SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA--GLVNEGGLY 83 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~~--~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~~~ 83 (311)
-.+++|++++.++...+ ....| .+.-+|.+..-++-+.++++-.++ ..||+..-..+. +|. ++- .|+..
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~----q~pdStiA~NLk-acn~fRl~-ngr~a 238 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR----QFPDSTIAKNLK-ACNLFRLI-NGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH----hCCCcHHHHHHH-HHHHhhhh-ccchh
Confidence 45789999999985543 33333 355667888888888888888877 446654333222 221 221 22111
Q ss_pred hHH------------HHHHHHhhcc------------CCch-----HHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhh
Q 040965 84 LGK------------QVHGYILRNE------------IVLS-----VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134 (311)
Q Consensus 84 ~a~------------~~~~~~~~~~------------~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 134 (311)
+.+ ...+.+.+.+ +-|+ +.....|+-.|.+.+++.+|..+..++.+.++.-
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~E 318 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYE 318 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHH
Confidence 110 0111122111 1111 1233456667889999999999999886655554
Q ss_pred HHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH
Q 040965 135 WNAMISSLASNSR-------EKEALVMFDEMKEKGLRANE-ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206 (311)
Q Consensus 135 ~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (311)
|-.-.-.+...|+ ..-|...|.-.-+.+..-|. .--.++..++.-..++++.+.+++.+..- -...|...+
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~ 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh
Confidence 4443333333333 44444445443333332222 12345556666777889999998888653 223333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchh-HHHHHHHHHhcc
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCG-RYVVLSNIHAGL 282 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 282 (311)
.+..+++..|++.+|+++|-.+ +-+ .|..+|.+++ ++|.+.+.++.|..++-++- .|.+.. ....+..-|.+.
T Consensus 398 -N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 -NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred -HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHH
Confidence 4688999999999999999888 322 4556666554 67889999999887765532 233322 333455678889
Q ss_pred chhHHHHHHHHHHHHccCCC
Q 040965 283 ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~~ 302 (311)
+.+--|.+.|+++...++.|
T Consensus 475 ~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhhhHHHccCCCc
Confidence 99999999998888766554
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=9.8e-07 Score=66.64 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=113.0
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHH
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGA 240 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 240 (311)
.| |... ..+-..+...|+-+....+....... ...+......++....+.|++.+|...+++. .-++|...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 44 3444 66677888899999998888886542 3445556666889999999999999999999 54567789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.-+|.+.|+++.|..-|.++.++.|.++.+++.|+..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988776543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=4.4e-07 Score=77.64 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
|-...-..+...+.+.|-+..|..+|++. ..|.-.|.+|...|+..+|..+..+..+. +||...|..+.+...
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33334445566666667777777766654 23444566666667777777766665552 556666666655544
Q ss_pred ccc----------------------------cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 179 RAQ----------------------------LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 179 ~~~----------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
... +++++.+.|+.-.+.... -..+|-.+..+..+.++++.|.+.|..-
T Consensus 469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 444 444444444444332111 2235655666666777777777777665
Q ss_pred CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 230 PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 230 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...||. ..|+.+-.+|.+.|+-.+|...++++.+.+-.+...|...+....+.|.+++|.+.+.++.+.
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 445544 677888777888888888888888887766666667777777777788888888887777654
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=1.7e-06 Score=74.59 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=96.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccchH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIKDV--CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
.+.+......|.+|+.+++.+....+ .-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34555666778888888887755543 34677788899999999999988653 23556677899999999
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.++ .|+. -|..|-+.|..+..+++..+
T Consensus 809 da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 9988877775 445556667666667778888888888877775 4443 34566666766666666554
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.4e-07 Score=65.46 Aligned_cols=100 Identities=10% Similarity=-0.048 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
.....+...+...|++++|...++.+... .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 33444555556666666666666666542 1224445555566666666666666666555 2233 334444455556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCch
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
...|+++.|...++++.+..|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccc
Confidence 666666666666666666666554
No 115
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=1.5e-05 Score=67.67 Aligned_cols=205 Identities=14% Similarity=0.009 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
+.....-.+...|+-++|........+.+ .-+.+.|+.+- ...+. ..++++|++.|...++.+ +.|...+.-+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~g-l~~R~--dK~Y~eaiKcy~nAl~~~-~dN~qilrDl 115 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLG-LLQRS--DKKYDEAIKCYRNALKIE-KDNLQILRDL 115 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHH-HHHhh--hhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33333344455666666666666655532 12233333322 11122 333666666666666654 3355555555
Q ss_pred HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHH------HH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLT------AC 177 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~------~~ 177 (311)
.-.-++.|+++........... .....|..++.++.-.|++..|..++++..+.. -.|+...+..... ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5555555666655555544422 234456666666666677777777766665543 1344443332221 23
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhh-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEH-YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
.+.|..+.|.+.+..-... ..|-.. -..-...+.+.+++++|..++..+ ...||...|.-.+
T Consensus 196 ~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 4455566666555554321 122222 233345566667777777776666 3345555444443
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.4e-06 Score=71.90 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=162.6
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC-------CCCCchHH-HHHHHHHhhh
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-------LVRPNEAT-YVSVLSSCAG 75 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~p~~~~-~~~ll~~~~~ 75 (311)
.|..-|+.+.|.+-.+.+. +..+|..|.+.|.+.++.+-|.-.+-.|..... ...|+... -..++. ..
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA--ie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA--IE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH--HH
Confidence 5667799999988877663 567899999999999888877766666643210 01232211 111111 12
Q ss_pred hhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.|.+++|+.+|.+..+.+ .|=..|...|.+++|.++-+.-.+- -..||......+-..+|.+.|+++
T Consensus 813 ---LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 ---LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred ---HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 555999999999887643 3445677789999999987644222 235677777777778888888888
Q ss_pred HHHH----------HHcC---------CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 155 FDEM----------KEKG---------LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 155 ~~~m----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
|++. .... -..|...|.-....+-..|+++.|+.+|....+ |-+++...|-
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCI 950 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEee
Confidence 8753 1111 122445666667777788999999999988863 5567788888
Q ss_pred cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 216 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|+.++|-++-++-| |......|.+.|-..|++.+|..+|.++..
T Consensus 951 qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999988875 456667788889999999999998887763
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.3e-06 Score=68.50 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+.+..++|+..++.....+..+...-.+.+-+.|++++|.++|+.+.+.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555555554333333334444444444555555555555554443
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=1e-06 Score=72.56 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
....+|+..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++.+..+.. +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777788999999999999988888888889999999999999999999988762 336667777778899999
Q ss_pred cHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 182 LVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+.+.|+.+.+++.+ ..|+ ..+|..|+.+|...|+++.|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999985 4565 5699999999999999999999999885443
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=4.5e-07 Score=74.63 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
.....++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556677777889999999999999865 355 4556788888889999999999888 3344 445555555668
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
...++++.|..+.+++.+..|++..+|..|+.+|...|++++|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998775
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=1.3e-05 Score=71.30 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=120.9
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 040965 97 IVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173 (311)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 173 (311)
.+.++..+..|.....+.|++++|+.+++.+. .| +......++..+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35567888889999999999999999999883 34 56677788899999999999999999988863 2256667777
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 251 (311)
..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|++. ...|....|+..+. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 88899999999999999999863 2234668888999999999999999999998 33455555554432 33
Q ss_pred hHHHHHHHHHH
Q 040965 252 DLCHEVGRRLL 262 (311)
Q Consensus 252 ~~a~~~~~~~~ 262 (311)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 34445555543
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4.2e-05 Score=63.08 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=72.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 219 (311)
.+...|++++|+..++.+... .+-|..........+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 334556777777777776655 1224444455556667777777777777777643 444 33445556677777777
Q ss_pred HHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 220 SEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 220 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+|..+++.. ..+-|+..|..|..+|...|+..++.....+...
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7777776666 3334556666677777777766666655554443
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3e-06 Score=72.76 Aligned_cols=212 Identities=13% Similarity=0.044 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHH
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (311)
-..+...+...|-...|+.+|++... |.-++.+|..++ +..+|..+..+..++ +|+...|..++
T Consensus 401 q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg---~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLG---QHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhc---ccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 34667778888888899888888753 333444444433 377788887777763 67778888888
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+......-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +....+|.....+..+.++++.|.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777777788888888765433 22222223344788888888888766542 3356788888888888888988888
Q ss_pred HHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 189 LFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|..... ..|+ ...||.+-.+|.+.|+-.+|...+++. +. ..+...|...+....+.|.+++|.+.+.++..
T Consensus 541 aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888873 4554 578888889999999999998888887 22 23445566666667788889999888888875
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.4e-05 Score=60.18 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=131.4
Q ss_pred chhHHHHHHHHhhc---c-CCchH-HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhH---HHHHHHHHcCCCHHHHHH
Q 040965 82 LYLGKQVHGYILRN---E-IVLSV-FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW---NAMISSLASNSREKEALV 153 (311)
Q Consensus 82 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~ 153 (311)
.++..+++.+++.. | ..++. .+|..++-+....|+.+.|..+++++...-+.++ ..-..-+-..|++++|++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 55555555555432 2 34443 3344555666677888888888888743322222 222233445789999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
+|+.+.+.+ +-|..++..=+...-..|+.-.|++-+...++. +..|...|.-+...|...|++++|.-.++++ -+.
T Consensus 108 ~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 108 YYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 999998875 447778877777777888888999998888874 5778889999999999999999999999998 445
Q ss_pred CCc-chHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCchhHH
Q 040965 233 PDA-SVLGALLGACKIH---GAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 233 p~~-~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
|.. ..+..+...+.-. .+.+.+.+.|.+.+++.|.+...+
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 644 4445565554333 367888999999999988554333
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.7e-06 Score=66.62 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=145.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV-LTACAR 179 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~ 179 (311)
+++.+..+.+..++++|++++..-.++ +....+.+..+|-...++..|-+.|+++-.. .|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 345555667788899999988766443 5567788888999999999999999998765 5655555432 456778
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHH--HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVV--DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
.+.+.+|+++...|.++ |+...-..-+ ......+++..+..++++.+...+..+.+...-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 89999999999988652 3322111111 22346788999999999985456666666555556789999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
|+.+.+.+.-.+..-..+.-+..+.|++..|.++..+++++|++.-|.+
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999986654444444666677788999999999999999999877654
No 125
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=7.2e-06 Score=70.85 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=126.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
...|.+|+.+++.+..+.. -..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|+|..|.++-.+.
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh
Confidence 4559999999998887643 23456677889999999999999997652 3556788999999999999987664
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchH
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 238 (311)
. |.......|.+-..-+-+.|++.+|.+++-.+- .|+. -|..|-+.|..+..+++.++-.-..-..|.
T Consensus 818 ~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 818 H--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred c--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 3 334455666666666778888888877664442 2332 356777888888888887776312233555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
..+..-+-..|+...|+.-|-++- -|..-+.+|...+.|++|.++-
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 666666777777777776665543 2334445555555555555544
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=7e-06 Score=67.49 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~ 245 (311)
.-|..-+ .+...|+++.|+..++.++.. .+-|+.......+.+.+.++.++|.+.++++ ...|+. .....+..++
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3344444 456789999999999999864 3445555667779999999999999999999 667875 5556677889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+.|++.+|..++++....+|+++..|..|.++|...|+..+|.....+...
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887777776666544
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.8e-06 Score=60.99 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
.....+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++.+.+|++...+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33445556666666677776666665 2233 345555555666666666676666666666666666666666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 677777766666666544
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=1.4e-06 Score=61.31 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
...-.+...+...|++++|..+|+.+ .+.|.. .-|..|.-++...|++++|+..|..+..++|+++.++..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445556666788888888888887 445543 5556666677778888888888888888888888888888888888
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|+.+.|.+.|+..+...
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 888888888888776653
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9.6e-06 Score=61.09 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHccc--------chH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 115 GCLERAIRVFKSMVI--------KDV-CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 115 g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
.+.++..+++.++.. ++. ..|..+.-+....|+.+.|...++++... ++-+...-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 345555555555521 121 23445555667789999999999998876 33233333222333567899999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|.++++..++. -+.|..++-.-+...-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.+++++=
T Consensus 105 A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999975 2456677777777777788888888777766 5667889999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHhccc---hhHHHHHHHHHHHHccC
Q 040965 264 LQPKHCGRYVVLSNIHAGLE---RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 300 (311)
..|.++..+..+.+.+.-.| +.+-|.++|.+..+.+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999877778888766444 56678888988877554
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=9.7e-06 Score=57.92 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCH
Q 040965 145 NSREKEALVMFDEMKEKGLRAN---EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHYGCVVDLLGRAGLL 219 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 219 (311)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555655566555542 111 122223334455566666666666666544 212211 1223344555555666
Q ss_pred HHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 220 SEAKEFMRSMPFE-PDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 220 ~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
++|+..++..... .....+......+...|+.++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666665554211 12222333334455555555555555543
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=1.2e-05 Score=71.63 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=52.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH---hhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV---CTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.++...+..-|+...+.. +.|...|..++.+|.++|++..|.++|.++..-++ ..-.-..-..+..|.+.+|+..+
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667777777776654 44778888899999999999999999977633222 11112223345567777777776
Q ss_pred HHHH
Q 040965 156 DEMK 159 (311)
Q Consensus 156 ~~m~ 159 (311)
....
T Consensus 654 ~~ii 657 (1238)
T KOG1127|consen 654 GLII 657 (1238)
T ss_pred HHHH
Confidence 6654
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=1.8e-05 Score=71.45 Aligned_cols=205 Identities=11% Similarity=0.008 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHH
Q 040965 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142 (311)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 142 (311)
...+..|+..+. ..+++++|.++.+...+.. +-....|-.+...+.+.++.+++.-+ .++...
T Consensus 31 ~~a~~~Li~~~~---~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYK---SENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 344555555332 2556788887777655542 22334444444466666664444333 345555
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
....++.-+..+...|... .-+...+..+..+|-+.|+.++|..+|+++++. . +-|+.+.|.+...|... ++++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHH
Confidence 5666665555555566553 234568888999999999999999999999975 2 44678899999999999 99999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh--------------------HHHHHHHHHhcc
Q 040965 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG--------------------RYVVLSNIHAGL 282 (311)
Q Consensus 223 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~ 282 (311)
.+++.+.- ..+...+++..+..+|.++.+..|++.. .+..+-..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 99988761 1245555666666666666666665432 333444667778
Q ss_pred chhHHHHHHHHHHHHccCC
Q 040965 283 ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~ 301 (311)
++|+++..+++.+.+....
T Consensus 237 ~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhHHHHHHHHHHhcCCc
Confidence 8999999999999886544
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00014 Score=65.36 Aligned_cols=237 Identities=12% Similarity=0.123 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
.+..|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.. .|.+++-.+.+....+..-+|.+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~---~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASR---TGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhhcCccch--
Confidence 3567889999988999999988877554 255667778876554 556888888887777765555544
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhh--------------------------HHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCT--------------------------WNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
+.|+-+|++.+++.+.++++. -|+..- |..|...+...|+++.|.+.-++.
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468888899888887776652 333333 333444444444444444333221
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-Ccc
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DAS 236 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 236 (311)
.+..||..+-.+|...+.+..|. |..- ++.....-..-|+..|...|-+++-+.+++.. |.+. ...
T Consensus 1247 ------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1247 ------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred ------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 13445555555555444443331 2111 12223344555666666666666666666655 4332 223
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.|+-|.-.|++ =++++..+.++-... ..+ .-.+++++....-|.+..-++..-
T Consensus 1315 mfTELaiLYsk-ykp~km~EHl~LFws-RvN----ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1315 MFTELAILYSK-YKPEKMMEHLKLFWS-RVN----IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHH-hcc----hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333333 233333333332221 111 114566666666666666555543
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.51 E-value=0.00022 Score=62.09 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=171.2
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH-------------------HHH----HHHHh
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG-------------------KQV----HGYIL 93 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a-------------------~~~----~~~~~ 93 (311)
...+..+.++.-+......+ ..-+..++..+...+..+...++.+++ ... +.++.
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~--w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRS--WSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred cCCCCchHHHHhhhHHhhcc--cccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 34567777888887777766 566666666666655544444444444 111 12222
Q ss_pred hccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HH
Q 040965 94 RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-IT 169 (311)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~ 169 (311)
...+.-+..+|..|.-+....|+++.+.+.|++...- ....|+.+...|...|.-..|..+++.-....-.|+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 2334556778888888888999999999999987543 5577888999999999999999999886554323533 33
Q ss_pred HHHHHHHH-HccccHHHHHHHHHHhhccCCC---ccchhhHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCC
Q 040965 170 FVAVLTAC-ARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRA-----------GLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 170 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p 233 (311)
+-..-..| .+.+..++++.+-.++.+..+- ...+..|-.+.-+|... ....++.+.+++. .+.|
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333 4567888888887777653211 11233455555555421 2244566777776 3333
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|......+.--|+..++++.|.+..++..+++ .++...|..|+..+...+++.+|+.+.+...+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22232333334778899999999999999984 55777999999999999999999999886654
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=1.9e-05 Score=56.38 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchH--HHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV--FMG 104 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 104 (311)
.|..++..+ ..++...+...++.+.+.. |+. ......+.........|++++|...|+.+......|+. ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 455555544 3666777777777776643 222 22222222112222356677777777777665533322 233
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
..|..++...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666666666666666554322 334455556666666666666666654
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=3.8e-06 Score=57.73 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLG 243 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 243 (311)
+..++..+.+.|++++|...|+.+.....-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455556666666666666554311111 1223444555666666666666666655 22232 233444445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
.+...|+.++|...++++.+..|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 556666666666666666666666543
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=3.7e-05 Score=68.62 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcccch---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVIKD---VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
...|...|-+..+.| ...|..|...|+..-+...|.+.|++..+.+ .-+..........|.+..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555555543333 3467777777777667777777777766543 225556667777777777777777774333
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
-++.....-...|....-.|.+.++...|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 222001111122333444566677777777777776 4445 55677777777777777777777777777777776544
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
-.......+..|++.+|...+..+..
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555556677777777777766653
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=2.6e-06 Score=58.54 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHH
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVL 275 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 275 (311)
.++..++..+.+.|++++|.+.|+.+ ...|+. ..+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35677888899999999999999998 334442 355667788999999999999999999987774 4578889
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.++.+.|++++|...++++.+....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999987654
No 139
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=5.1e-05 Score=66.54 Aligned_cols=271 Identities=11% Similarity=0.060 Sum_probs=148.4
Q ss_pred hhhhhcCChHHHHHHHHHhc-------------cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENML-------------KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 69 (311)
.+|.+..+++-|.-.+..|. +++ ..=.-..-.....|..++|..+|.+.++.+ ..|-+
T Consensus 765 ~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKl 835 (1416)
T KOG3617|consen 765 SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKL 835 (1416)
T ss_pred HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHH
Confidence 45566666666655555551 111 111112223356788888888888876532 22333
Q ss_pred HHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-------------------
Q 040965 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK------------------- 130 (311)
Q Consensus 70 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------- 130 (311)
.. ..|.+++|.++-+.--+..+ ..||......+-..++++.|++.|++...+
T Consensus 836 yQ------s~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 836 YQ------SQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HH------hcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 32 25667777776654333222 234555556666677777777777765111
Q ss_pred ----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----------C----------CCCcHHHHHHHHHHHHccccHHHH
Q 040965 131 ----DVCTWNAMISSLASNSREKEALVMFDEMKEK----------G----------LRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 131 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------~----------~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
|...|.=....+-..|+.+.|+.+|...+.. | -.-|......+.+.|-..|++.+|
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 3333444444455567777777777665431 0 012455666777888888888888
Q ss_pred HHHHHHhhccCC-Cc--cchhhHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH-
Q 040965 187 LELFHSMLGKFE-VV--PIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR- 260 (311)
Q Consensus 187 ~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~- 260 (311)
..+|.+...-.+ +. .....-..|...+. ...+.-.|.++|++.|.. +..-+..|-+.|.+.+|+++-=+
T Consensus 987 v~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 987 VKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 888877642100 00 00001122222222 233444566677776522 22233456677777777665221
Q ss_pred -------HH--hcCCC-chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 261 -------LL--ELQPK-HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 261 -------~~--~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++ .++|. ++.....-.+.+....++++|..++...+
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11 25555 56677778888888888998888776544
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.48 E-value=2.3e-06 Score=55.91 Aligned_cols=93 Identities=22% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
+..+...+...|++++|...+++. ...|+. ..+..+...+...|++++|...+++..+..|.+..++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777776 333433 455556666777788888888888888777777667777788888888
Q ss_pred hhHHHHHHHHHHHHc
Q 040965 284 RWNRATDLRKAMVEA 298 (311)
Q Consensus 284 ~~~~A~~~~~~m~~~ 298 (311)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776653
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.45 E-value=3.9e-07 Score=47.41 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=27.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 142
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00012 Score=60.98 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--h----H
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--S----V 101 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~ 101 (311)
-...+.++.-+..+++.|++.++...+ +. ...+|...+.+. .+ ..|.+.+.........+.|-.. + .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~e----l~-~~it~~~n~aA~-~~-e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALE----LA-TDITYLNNIAAV-YL-ERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh----Hh-hhhHHHHHHHHH-HH-hccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 355677777788888888888888876 44 444444444321 11 1333444444444444433211 0 1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHcc
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-ITFVAVLTACARA 180 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~ 180 (311)
..+..+..+|.+.++++.|+..|.+...+... -....+....+++.+..+...-. .|.. .-...-...+++.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhc
Confidence 11222444666777888888888775333111 11222334444555444443322 2322 1122225567778
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
|++..|+..|.++++. .+-|...|.....+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|
T Consensus 372 gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888765 2445677888888888888888887766555 33333 234444444555666788888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHh
Q 040965 259 RRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
++.++.+|++......+.++..
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHH
Confidence 8888888877654444444443
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.41 E-value=0.0008 Score=56.56 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCC-CcchHHHHHHHHHhcCChhHHHHHH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEP-DASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
.+....++++++......|+. +|-.+++.-.+..-+..|..+|.+. +..+ ++..+.+++.-+ ..+|.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHH
Confidence 455556666666655556655 6777777777888888888888888 2333 556666666644 467888888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
+--++..++++..-...++.+...++-+.|..+|++....++.++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8888878887756667777788888888888888888877555443
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.41 E-value=1.9e-06 Score=52.86 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=59.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc-hhHHHHHHHHHHHHcc
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE-RWNRATDLRKAMVEAG 299 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 299 (311)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|.+.| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34677788888999999999999999999999999999999999999999 8999999999887653
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.40 E-value=6.7e-07 Score=46.19 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777888888888888877777766
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.00041 Score=61.47 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=150.1
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...+++.+|+.......++ .|+.. |..++.++.... .|+.++|..+++.....+.. |..|...+-.+|.+.|+
T Consensus 20 ld~~qfkkal~~~~kllkk----~Pn~~-~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK----HPNAL-YAKVLKALSLFR-LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH----CCCcH-HHHHHHHHHHHH-hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 4568899999999999874 46654 445556655554 88899999888877665544 78888999999999999
Q ss_pred HHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc----------cHH
Q 040965 117 LERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ----------LVE 184 (311)
Q Consensus 117 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 184 (311)
.++|..+|+..... +......+..+|.+.+.+.+-.++--+|.+. .+-..+.|-.++......- -..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999554 4444445566777877766555544444442 3335566666666554321 134
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHh-C-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS-M-PFEPDA--SVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
-|.+.++.+.+..|---+..-...-...+...|++++|.+++.. . ...++. ..-+.-+..+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 56777777777643111111122223345578899999999833 3 222332 3333455667889999999999999
Q ss_pred HHhcCCCc
Q 040965 261 LLELQPKH 268 (311)
Q Consensus 261 ~~~~~~~~ 268 (311)
+...++++
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 99988887
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.38 E-value=6e-07 Score=57.51 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEP---DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 222333345555556666666665555 4444444444444455566666666666655
Q ss_pred HH
Q 040965 293 KA 294 (311)
Q Consensus 293 ~~ 294 (311)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=6.5e-07 Score=46.56 Aligned_cols=34 Identities=26% Similarity=0.635 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~ 63 (311)
+||++|.+|++.|++++|.++|++|.+.| +.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g--~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG--IEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCCC
Confidence 79999999999999999999999999998 88873
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.37 E-value=1.9e-06 Score=52.15 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+...|++++|...|+++++..|.+...+..++.++...|++++|...|+++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445678899999999999999999999988999999999999999999999999887654
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=4e-06 Score=69.23 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=85.0
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGA 250 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 250 (311)
-...+...|+++.|+..|+++++. .+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345677889999999999999864 2334667888889999999999999999998 5556 45677778888999999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
+++|...|+++++.+|++......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999988665554443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.34 E-value=1.1e-05 Score=59.59 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444444555555555555555544 22221 134444555555566666666666666665555555555555555
Q ss_pred hccch--------------hHHHHHHHHHHHHc
Q 040965 280 AGLER--------------WNRATDLRKAMVEA 298 (311)
Q Consensus 280 ~~~g~--------------~~~A~~~~~~m~~~ 298 (311)
...|+ +++|.+++++....
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 55444 45555555555543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.2e-05 Score=60.82 Aligned_cols=264 Identities=13% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHH-HHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY-VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
........+.+..++..|+..+...++. -|+...| ..-...+.. -|+++++.--.++-++.... .......
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~---~~~~~~a~~dar~~~r~kd~-~~k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMM---LGRFEEALGDARQSVRLKDG-FSKGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHH---HHhHhhcccchhhheecCCC-ccccccc
Confidence 3445556677778888888888888874 3444332 211111111 22244444444333332110 1122223
Q ss_pred HHHHHhhcCCHHHHHHHHHH---------------ccc-----chHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 107 LIDLYGKVGCLERAIRVFKS---------------MVI-----KDVCTWNAM-ISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~---------------~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.-.++...++..+|...++. ... |.-.+|..+ ..++.-.|++++|...--..++..- .
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~ 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c
Confidence 33444444444444433332 111 112333333 2456678899988887766665431 1
Q ss_pred cHHHHHHHHH--HHHccccHHHHHHHHHHhhccCCCccchhhH-------------HHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 166 NEITFVAVLT--ACARAQLVELGLELFHSMLGKFEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 166 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
+ .+..+++ ++.-.++.+.|...|++.++ ..|+...- ..=.+-..+.|++.+|.+.|.+.
T Consensus 202 n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 202 N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 2 2223333 34567889999999999884 45543221 11122345789999999999988
Q ss_pred CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 ~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.|+ ...|........+.|+..+|+.-.+++.+++|.-..+|..-+.++...++|++|.+-++...+..-.+..
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 55554 4455555566789999999999999999999988888888899999999999999999988776544433
Q ss_pred c
Q 040965 305 A 305 (311)
Q Consensus 305 ~ 305 (311)
.
T Consensus 357 r 357 (486)
T KOG0550|consen 357 R 357 (486)
T ss_pred H
Confidence 3
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.32 E-value=0.00018 Score=57.69 Aligned_cols=212 Identities=12% Similarity=0.118 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
.|......|-..|++++|.+.|.+...-.....-....-..+..+...+ +..++++|... |...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~---------------~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC---------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH---------------HHHH
Confidence 5666677777778888887777776431100000011111111111111 12223333333 3333
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHcc
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN-SREKEALVMFDEMKEK----GLRAN--EITFVAVLTACARA 180 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~ 180 (311)
+..|...|++..|-.++ ..+...|-.. |++++|++.|++..+. | .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 44455555555444433 3445566666 7777777777765432 2 221 24555666677777
Q ss_pred ccHHHHHHHHHHhhccCC----Cccchh-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---c---chHHHHHHHHHhc
Q 040965 181 QLVELGLELFHSMLGKFE----VVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---A---SVLGALLGACKIH 248 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~---~~~~~l~~~~~~~ 248 (311)
|++++|.++|+++....- .+.+.. .+-..+-++...|++..|.+.+++. ...|. . .....|+.++ ..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-Hh
Confidence 777777777777654311 112221 2233344566677777777777765 33331 1 2334444444 44
Q ss_pred CChhHHHHHHHHHHhcCCCc
Q 040965 249 GAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~ 268 (311)
||.+.....+.+.-.+.+-+
T Consensus 248 ~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---
T ss_pred CCHHHHHHHHHHHcccCccH
Confidence 55444444444433333333
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=9.3e-07 Score=45.63 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p 61 (311)
.+|+.++.+|++.|+++.|.++|++|.+.| ++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g--v~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG--VKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 589999999999999999999999999988 877
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.4e-05 Score=60.78 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=88.5
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh-c--CChhHHHHHHHHHHhcCCCchhHHHH
Q 040965 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKI-H--GAVDLCHEVGRRLLELQPKHCGRYVV 274 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~-~--g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (311)
+-|...|..|...|...|+++.|..-|.+. .+.| |...+..+..++.. . ....++..+|+++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447788999999999999999999999888 4444 44556666665432 2 24578889999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 275 LSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
|...+...|++.+|...|+.|.+.....+|..+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887777765554
No 156
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00059 Score=61.56 Aligned_cols=235 Identities=11% Similarity=0.137 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
|+..-+....++...+-+.+-++++++..-......-+.-.-+.++-... .-+...+.+..+++-.-+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyD-a~~---- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYD-APD---- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCC-chh----
Confidence 55566667788888888888888888876433111111111122221111 111333333433333221 111
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcc-------------------------cchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMV-------------------------IKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
+.......+-+++|..+|++.. -..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 1222333344445555544330 013567889999999999999998877432
Q ss_pred HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHH
Q 040965 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239 (311)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 239 (311)
-|+..|.-++....+.|.+++-.+++..+.++ .-.|. .=+.|+-+|++.++..+-++++. -||.....
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIA----GPNVANIQ 1198 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhc----CCCchhHH
Confidence 26678999999999999999999999888765 44555 34678899999999988776652 46777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.+..-|...|.++.|.-+|.... -|..|...+...|.++.|...
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665432 344555555555555554443
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=1.7e-05 Score=51.64 Aligned_cols=92 Identities=16% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++..... .+.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555555555555555554432 122344444555555555555555555555432 1112234444445555
Q ss_pred hcCCHHHHHHHHHhC
Q 040965 215 RAGLLSEAKEFMRSM 229 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~ 229 (311)
..|++++|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 555555555554443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=1e-05 Score=51.71 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=41.7
Q ss_pred CcchhHHHHHHHHhhccCC-chHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++. ...+....-.+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4466666666666665432 23344444666666666666666666552 11122333344566666666666666665
Q ss_pred H
Q 040965 157 E 157 (311)
Q Consensus 157 ~ 157 (311)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.23 E-value=2.8e-05 Score=57.14 Aligned_cols=110 Identities=14% Similarity=-0.070 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
.+...+..+.+..+..-....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444322122323455666777777778888888887777 33333 2356677777888888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHh-------ccchhHHHHHHHHH
Q 040965 260 RLLELQPKHCGRYVVLSNIHA-------GLERWNRATDLRKA 294 (311)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 294 (311)
++.+..|.....+..++..+. +.|++++|...+++
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888888877767777777776 77777755555543
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=0.00019 Score=62.17 Aligned_cols=137 Identities=10% Similarity=0.018 Sum_probs=77.2
Q ss_pred hHhhHHHHHHHHHc--C---CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcc--------ccHHHHHHHHHHhhcc
Q 040965 131 DVCTWNAMISSLAS--N---SREKEALVMFDEMKEKGLRAN-EITFVAVLTACARA--------QLVELGLELFHSMLGK 196 (311)
Q Consensus 131 ~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 196 (311)
+...|...+.+... . ++...|..+|++..+. .|+ ...+..+..++... .++..+.+...+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 55666666665332 2 2356777777777765 443 33343333322211 1233444444443322
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.....+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...++++.+++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 112233455666655555667777777777776 5556666666666777777777777777777777777765
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=3.7e-05 Score=50.47 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccc--------cHHHHHHHHHHhhccCCCccchhh
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQ--------LVELGLELFHSMLGKFEVVPIMEH 205 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 205 (311)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+|+.|+.. +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666667999999999999999999 899999999999876532 466788899999987 89999999
Q ss_pred HHHHHHHHHh
Q 040965 206 YGCVVDLLGR 215 (311)
Q Consensus 206 ~~~l~~~~~~ 215 (311)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=4e-06 Score=64.70 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCCh
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAV 251 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 251 (311)
.-+.+.+++.+|+..|.+++. +.| |.+-|..-..+|.+.|.++.|++-.+.. .+.|+. .+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 446788999999999999994 555 5566777889999999999999888877 666754 8899999999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++|.+.|+++++++|++......|-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999997444444433
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=5.9e-05 Score=60.40 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=115.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc-------c--hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCc--HHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI-------K--DVCTWNAMISSLASNSREKEALVMFDEMKE----KGLRAN--EIT 169 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~ 169 (311)
....+.|...|++++|.+.|.+... + -...|.....+|.+. ++++|.+.+++..+ .| .|+ ...
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 3445566666777777766665511 1 123444455555444 88888888877653 23 333 346
Q ss_pred HHHHHHHHHcc-ccHHHHHHHHHHhhccCCC--cc--chhhHHHHHHHHHhcCCHHHHHHHHHhCC---CCC-----Ccc
Q 040965 170 FVAVLTACARA-QLVELGLELFHSMLGKFEV--VP--IMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEP-----DAS 236 (311)
Q Consensus 170 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p-----~~~ 236 (311)
+..+...|... |+++.|++.|++..+-+.. .+ -..++..++..+.+.|++++|.++|++.. ... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 67777788888 9999999999988754211 11 13456778889999999999999999871 111 111
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----hhHHHHHHHHHhcc--chhHHHHHHHHHH
Q 040965 237 -VLGALLGACKIHGAVDLCHEVGRRLLELQPKH-----CGRYVVLSNIHAGL--ERWNRATDLRKAM 295 (311)
Q Consensus 237 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~--g~~~~A~~~~~~m 295 (311)
.+...+-.+...||...|...+++.....|.- ......|+.++-.. ..+++|..-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 12223335677899999999999999877642 23455667776542 3455555555443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=6.7e-05 Score=55.33 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=81.9
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYG 207 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 207 (311)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++.++. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345567777777788888888888888776533322 356777777788888888888888887753 33 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
.+...+...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~ 164 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhc
Confidence 6666676666655544332221 123577888888888888776 44444444433
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=4.8e-05 Score=60.70 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA-CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999988543 2234445444444 33367788899999999875 4445567888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+...++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|.+. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 889999999999999988 333333 4788888888889999999999999998887754 444444433
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.17 E-value=5.8e-05 Score=61.04 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhh---ccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSML---GKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-------P-FEPDAS 236 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 236 (311)
.|..|...|.-.|+++.|+...+.-+ +.+|.+. ....+..|..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555556667777765544321 2223322 2345666777777777777777776654 2 123445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..+|...|.-..++++|+.++.+-+.+. .....++..|..+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667777777777777777766554311 11234666777777777777777766655443
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.17 E-value=4.8e-05 Score=62.91 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=84.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
....+...|++++|++.|+++.+.. +-+...|..+..+|...|++++|+..+++++.. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 4566778899999999999999874 336778888889999999999999999999864 44 566788899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEPDASVLGALLGA 244 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 244 (311)
|++++|.+.|++. .+.|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999998 667777666555533
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=0.00015 Score=51.25 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
...-.+...+...|++++|..+|+-+.. | +..-|-.|..++-..|++++|+..|......+ +-|...+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344566667778888888888887733 2 55667778888888888888888888887765 236677777888888
Q ss_pred ccccHHHHHHHHHHhhccCCCccc
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI 202 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~ 202 (311)
..|+.+.|.+.|+..+...+-.|.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChh
Confidence 888888888888888776544443
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=0.00013 Score=58.30 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccch---HhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKD---VCTWNAMISS-LASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
.+|..+++...+.+.++.|..+|.++.+.. ...|-..+.. +...++.+.|.++|+...+. ...+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467888999999999999999999996543 3334433333 33367888899999998876 556778888889999
Q ss_pred HccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGAC 245 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 245 (311)
.+.|+.+.|..+|++.+....... ....|...++.=.+.|+.+.+.++.+++ ...|+......++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999987532223 3358888888888899999999999888 4456655555555444
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.14 E-value=4e-06 Score=42.14 Aligned_cols=29 Identities=45% Similarity=0.729 Sum_probs=20.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776665
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=5.5e-06 Score=50.59 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=37.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...|++++|...|+++....|++..++..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3566777777777777777777766777777777777777777777766665443
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=4.1e-05 Score=59.32 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=86.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 216 (311)
-..-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3456778999999999999999873 33677778888899999999999999888884 4664 57899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEPDASVLGALLGA 244 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 244 (311)
|++++|.+.|++. .+.|+-.+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999998 889988887665544
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.08 E-value=1.6e-05 Score=49.34 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..|...+++++|.+++++++..+|+++..+...+.++.+.|++++|...++...+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45677788888888888888888888778888888888888888888888888776553
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=7.9e-05 Score=62.04 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
+.+......+++......+++.+..++-+.... -..|..++++.|...|..++++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555566777777777777777777666222 23455688888888888888888888877888888888888
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
.|++.+.+.|++..|.++...|..+ +...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777766 4545555555444444443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0033 Score=49.05 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
..|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.++..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 335555555555555555554432222 22334444555555555555555443
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=1.9e-05 Score=47.63 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+...+...|++++|.+.|+++ ...| +...+..+...+...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566777777777777776 4345 33555556666777777777777777777777765
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.99 E-value=0.0026 Score=46.07 Aligned_cols=127 Identities=8% Similarity=-0.022 Sum_probs=75.3
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CcchHH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---DASVLG 239 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 239 (311)
.|+...-..|..+..+.|+..+|...|.+...- -+.-|....-.+.++....+++..|...++++ ..+| ++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 556666666667777777777777777776652 22345555566666666777777777777666 2222 223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
.+.+.+...|++..|+..|+.+...-|... .-......+.+.|+..+|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHH
Confidence 455666777777777777777776555532 3333444455566555544433
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=1e-05 Score=40.56 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888888764
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.99 E-value=0.00039 Score=60.23 Aligned_cols=141 Identities=7% Similarity=-0.014 Sum_probs=97.2
Q ss_pred cCCchHHHHHHHHHHHhhc-----CCHHHHHHHHHHcccch---HhhHHHHHHHHHcC--------CCHHHHHHHHHHHH
Q 040965 96 EIVLSVFMGTALIDLYGKV-----GCLERAIRVFKSMVIKD---VCTWNAMISSLASN--------SREKEALVMFDEMK 159 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~ 159 (311)
..+.+...|...+.+.... ++...|.++|+++.+.| ...|..+..++... .+...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456778888877765433 23779999999985543 33444444433221 12334444444433
Q ss_pred Hc-CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch
Q 040965 160 EK-GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV 237 (311)
Q Consensus 160 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 237 (311)
.. ....+...|..+.-.....|++++|...+++++. ..|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 1233557777777677778999999999999985 4678889999999999999999999999887 67787776
Q ss_pred HH
Q 040965 238 LG 239 (311)
Q Consensus 238 ~~ 239 (311)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 53
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.98 E-value=0.00011 Score=57.67 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLG 243 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 243 (311)
|...+....+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555666555555554311110 0124445555555555555555555555 21222 122222333
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.+...|+.+.|..+|+++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44455555555555555555555543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.0003 Score=51.68 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=30.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRA--NEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
.|..++..+...|++++|...|++.......| ...++..+...+...|+.++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 123455555555555555555555555553
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.0027 Score=49.49 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556788999999999999999876 223345677788899999999999998877664
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00024 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-CCchHHHHHHHHHhhhhhh-----cCcchhHHHHHHHHhhccCCchH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLV-RPNEATYVSVLSSCAGLVN-----EGGLYLGKQVHGYILRNEIVLSV 101 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~ 101 (311)
+-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.....- .+++-..+.+|+.|+..+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 44566777888899999999999999999 8 8999999999987654331 11345678889999999999999
Q ss_pred HHHHHHHHHHhh
Q 040965 102 FMGTALIDLYGK 113 (311)
Q Consensus 102 ~~~~~l~~~~~~ 113 (311)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00036 Score=58.21 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLG 239 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~ 239 (311)
+.+......+++.+....+++.+..++-+........ .-..|..++|+.|.+.|..+++.++++.= |+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455555566666666666666666666554431111 11224456666666666666666666543 6666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|+..+.+.|++..|.++...|..
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 666666666666666666655553
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.0082 Score=53.72 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=140.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHH-HHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTA-LIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.+++.+|.+...++.+.. ||...... -.-...+.|+.++|..+++.... .|..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 555888988888888763 33222111 12345688999999999987732 2888999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CC---------HHHHHH
Q 040965 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-GL---------LSEAKE 224 (311)
Q Consensus 155 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~ 224 (311)
|++..+. -|+......+..+|.+.+++.+-.+.--++-+. ++.+...+-++++.+... .. ..-|.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9998876 677888888888999988877655554444442 333444444555544432 11 223445
Q ss_pred HHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHH-HHHhcCCC-chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 225 FMRSMPFEP----DASVLGALLGACKIHGAVDLCHEVGR-RLLELQPK-HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 225 ~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.++.+-.++ +..-...-...+...|++++|..++. ...+..++ +...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555551122 11111112233567899999999984 33333333 4333445667777888888888888887777
Q ss_pred cCC
Q 040965 299 GIR 301 (311)
Q Consensus 299 ~~~ 301 (311)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=5.1e-05 Score=46.22 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=49.9
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll 70 (311)
+.+.|++++|+..|+.+.. | +...+..++.+|.+.|++++|.++++++.. ..|+...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHHHHHH
Confidence 3578999999999999843 3 677888899999999999999999999988 557766666555
No 187
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.0086 Score=50.66 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=128.5
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHH
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 121 (311)
.+++..+++.....- ..-+...|..+...--...+....+.....+++++......-.-+|..+++.-.+..-+..|.
T Consensus 309 t~e~~~~yEr~I~~l--~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEGL--LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 355666666665432 223333333333211111112235566666766666543333456677788777888888888
Q ss_pred HHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 122 RVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 122 ~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+|.++.+. ++..+.+++..||. ++..-|.++|+--.+. ..-+..--...+..+...|+-..+..+|++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 888887332 66777888887775 7888888888875443 1223334455666777888888888888888876
Q ss_pred CCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC----C--CCCCcchHHHHHHHHHhcCChhH
Q 040965 197 FEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM----P--FEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 197 ~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
++.|+ ...|..+++-=..-|+...+.++-+++ + ..+....-..+++.|.-.+...-
T Consensus 465 -~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred -cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 56654 467888888777888888888887665 2 22333444555566655555443
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.00017 Score=53.54 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=74.6
Q ss_pred HHHHHc--ccchHhhHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc--------------
Q 040965 122 RVFKSM--VIKDVCTWNAMISSLA-----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA-------------- 180 (311)
Q Consensus 122 ~~~~~~--~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------------- 180 (311)
..|+.. ..++..+|..++..|. +.|+.+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 4556677777777765 4588888888899999999999999999999887542
Q ss_pred --ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 181 --QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 181 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
.+-+-|++++++|... |+.||..++..|++.+.+.+..
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2467888899999766 8999999999999888766543
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.89 E-value=0.0033 Score=51.56 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLAS---NSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
.+.-.++-+|....+++..+++++.+... ....-...+-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445666789999999999999988544 22233345556667 899999999999966665677888888
Q ss_pred HHHHHHH----c-----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC-HH---HHHHHH---HhC----C-
Q 040965 172 AVLTACA----R-----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL-LS---EAKEFM---RSM----P- 230 (311)
Q Consensus 172 ~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~----~- 230 (311)
.+...|- . ....++|...|.+.-+ +.|+..+--.++..+...|. .+ +..++- ... +
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 7776652 1 2346788888876653 34554332223333333332 22 222222 111 1
Q ss_pred --CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 231 --FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 231 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
-..+-..+..++.++.-.|+.++|.+..+++.+..|+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12344556778888889999999999999999887664
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.88 E-value=0.0028 Score=48.03 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=24.4
Q ss_pred hhhcCChHHHHHHHHHhccc------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENMLKR------DVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
+.+.|++++|...|+.+... -..+.-.++.++.+.|+++.|...+++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555221 122344455555555555555555555554
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.85 E-value=0.0012 Score=44.92 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--hHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--SVFMGTALI 108 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 108 (311)
.+..++-..|+.++|+.+|++..+.| ..... .-..+|..-..+...|++++|..++++.....+.+ +......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG--LSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 35566677788888888888887766 44332 22334433344445677777777777776642210 222223344
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 142 (311)
.++...|+.++|++.+-....++...|.--|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776665555444444444444
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.00065 Score=48.57 Aligned_cols=70 Identities=24% Similarity=0.213 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH-----HccCCCCCcc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV-----EAGIRKIPAY 306 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 306 (311)
....++..+...|+++.|..+++++...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566778889999999999999999999999999999999999999999999999875 3588776643
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.83 E-value=0.011 Score=48.02 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=61.1
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH--HHHHHHHHhhcCC
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM--GTALIDLYGKVGC 116 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~ 116 (311)
.|+-..|.++-.+..+. +..|......++.+-..+. .|+.+.|.+-|+.|... |.... ...|.-.-.+.|.
T Consensus 97 AGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~-eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALL-EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHh-cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 45555555554444321 3445555555565555555 66777777777777652 22111 1122222334566
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.+.|...-+..-. | -.-.+...+...+..|+|+.|+++++.-+.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6666665555421 2 234555666667777777777777766543
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.012 Score=47.72 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 248 (311)
+.+.-+.-|...|+...|.++-.+.. .|+..-|-..+.+++..+++++-.++... +-.+..|..++..|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 34444555667788777777655552 46777788888888888888887776543 33457788888888888
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
|...+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888888877761 124556677778888777655
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.0011 Score=45.17 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHH
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLG 214 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 214 (311)
...++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556666777777777777776665443 23455566667777777777777777665421111 1112222334555
Q ss_pred hcCCHHHHHHHHHh
Q 040965 215 RAGLLSEAKEFMRS 228 (311)
Q Consensus 215 ~~g~~~~A~~~~~~ 228 (311)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66777776666543
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.77 E-value=6.2e-05 Score=46.01 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG-AVDLCHEVGRRLLELQP 266 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 266 (311)
.+|..+...+...|++++|+..|++. ...| +...+..+..++...| ++++|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45555566666666666666666665 3333 3345555555566666 56666666666666555
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.0007 Score=48.21 Aligned_cols=86 Identities=5% Similarity=-0.140 Sum_probs=52.9
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
-+...|++++|..+|+-+.-- + .-+..-+..|..++...+++++|...|... -..-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345677777777777776542 1 123334566666677777777777777665 112334444455566777777777
Q ss_pred HHHHHHHHHh
Q 040965 254 CHEVGRRLLE 263 (311)
Q Consensus 254 a~~~~~~~~~ 263 (311)
|+..|..+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.76 E-value=0.00075 Score=53.08 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHH
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVL 275 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 275 (311)
..|...+..+.+.|++++|...|+.+ ...|+. ..+..+...|...|++++|...|+++.+..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34666555556778999999999888 445654 356667778889999999999999999877764 4466667
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.++...|++++|..+|+++.+....
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888899999999999988876543
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0075 Score=43.83 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=86.6
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
|.+..--.|..++...|++.+|...|++....-..-|......+..+....++...|...++++.+...-.-++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444455677777888888888888876654334466777777777888888888888888776542221233455566
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
...|...|.+..|+..|+.. ...|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77778888888888887776 445555444444445667776666655444443
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00062 Score=50.64 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHhc-----CCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-----------
Q 040965 13 SAILLFENM--LKRDVVSWTSIINGFVRN-----GCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA----------- 74 (311)
Q Consensus 13 ~A~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~----------- 74 (311)
.-...|+.. ..++..+|..++..|.+. |..+=....+..|.+-| +.-|..+|+.|+..+=
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg--v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG--VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC--CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 345667766 566888999999998754 77777888889999999 9999999999998641
Q ss_pred ----hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 75 ----GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 75 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...+ +.+-+++++++|...|+-||..++..+++.|++.+.
T Consensus 110 ~~F~hyp~--Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPR--QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcH--HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 266788899999999999999999999888876654
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.015 Score=47.84 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHc---cccHHHHHHHHHHhhccCCCccchhhH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAVLTACAR---AQLVELGLELFHSMLGKFEVVPIMEHY 206 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (311)
.+...++-+|....+++..+++++.+...- +.-....-....-++.+ .|+.++|++++..++.. ...+++.+|
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 334455667899999999999999988641 11122222334445666 89999999999995554 456677788
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChh----HHHHHH---HHHH-hc----
Q 040965 207 GCVVDLLGR---------AGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVD----LCHEVG---RRLL-EL---- 264 (311)
Q Consensus 207 ~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~~---- 264 (311)
..+...|-. ....++|.+.|.+. .+.||..+--.++..+...|... +..++- ..+. +.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 888876642 23578899999888 66777655444444444444322 222222 1111 11
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.-.+...+.+++.++.-.|+.++|.+..++|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 12244567789999999999999999999998763
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.62 E-value=0.016 Score=43.96 Aligned_cols=186 Identities=9% Similarity=0.033 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+-.....+...|++.+|.+.|+.+....+.-+--....-.+.. +.. +.|+++.|...+++.++.-+.....-+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~--a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAY--AYY-KQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHH--HHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH--HHH-HcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 3344455666778899999999999888753211111111112222 222 3677888888888887764322222222
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
..+.+.+......... ...+ -...+..++.-|=.+.-..+|...+..+.+. =...-..+...|.
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2222221111111110 0011 1223445555555566666666666555432 1111223556688
Q ss_pred ccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 223 (311)
+.|.+..|..-++.+++++.-.+. ......++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888888888876332222 244566777888888777543
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.60 E-value=0.031 Score=46.48 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=73.6
Q ss_pred cccc-HHHHHHHHHHhhccCCCcc-chhhHHHHH----HHHHhc---CCHHH---HHHHHHhCCCCC----CcchHHHHH
Q 040965 179 RAQL-VELGLELFHSMLGKFEVVP-IMEHYGCVV----DLLGRA---GLLSE---AKEFMRSMPFEP----DASVLGALL 242 (311)
Q Consensus 179 ~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~~---A~~~~~~~~~~p----~~~~~~~l~ 242 (311)
+.|. -++|+++++.+++ +.| |...-|.+. ..|... ..+.. -...+++.|+.| +...-|.|.
T Consensus 391 ~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 3444 6778888887764 232 222222211 222211 11222 223344446665 334556666
Q ss_pred HH--HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 243 GA--CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 243 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+ +..+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..++..+.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 65 5689999999988888888999 66799999999999999999999998753
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=7.8e-05 Score=38.11 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
+|+++++.+|+++.+|..++..|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.52 E-value=0.011 Score=50.86 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhh-hcCcchhHHHHHHHHhhccCCchHH
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLV-NEGGLYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (311)
...++....-.|+-+.+++.+.+..+.+. +.-.. ..|+..+..+.... .....+.+.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34455666678899999999988876431 22211 22334443333330 145578889999988876 45554
Q ss_pred HHHH-HHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 103 MGTA-LIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 103 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
.|.. -.+.+...|++++|++.|++.... ....+--+...+.-..+|++|.+.|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4443 356777889999999999976432 33445556667788899999999999988753 33555555554
Q ss_pred HH-HHccccH-------HHHHHHHHHhh
Q 040965 175 TA-CARAQLV-------ELGLELFHSML 194 (311)
Q Consensus 175 ~~-~~~~~~~-------~~a~~~~~~~~ 194 (311)
.+ +...|+. ++|..+|.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 43 4456666 78888887764
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.04 Score=45.87 Aligned_cols=255 Identities=9% Similarity=0.072 Sum_probs=150.2
Q ss_pred hhhcCChHHHHHHHHHhccc---c------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh
Q 040965 5 YVKNGDMDSAILLFENMLKR---D------VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 75 (311)
+-+++++++|+++|.++.+. + ...-+.++++|.. ++.+.....+.+..+ ..| ...|..+..+...
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~----~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ----QFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH----hcC-CchHHHHHHHHHH
Confidence 45789999999999999432 2 2234567777754 456666666666665 345 4456666666555
Q ss_pred hhhcCcchhHHHHHHHHhhc--cCCc------------hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHh
Q 040965 76 LVNEGGLYLGKQVHGYILRN--EIVL------------SVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVC 133 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~ 133 (311)
+. ++.+.+|.+.+..-..+ +..| +...-+..++++...|++.++..+++++.+. +..
T Consensus 90 Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 55 77799998888766554 2221 2222356678899999999999999988433 677
Q ss_pred hHHHHHHHHHcC---------------CCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHHcc--ccHHHHHHHH
Q 040965 134 TWNAMISSLASN---------------SREKEALVMFDEMKEK------GLRANEITFVAVLTACARA--QLVELGLELF 190 (311)
Q Consensus 134 ~~~~l~~~~~~~---------------~~~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 190 (311)
+|+.++-.+.++ ..++.+.-+.++|... .+.|-...+..++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 787754444321 1133444444444322 2344444444554443321 1222223333
Q ss_pred HHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHhC---CCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 191 HSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM---PFE----PDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 191 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+.-.+. -+.|+-. ....|+..+.. +.+++..+-+.+ .+. .-..++..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 249 ENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333222 4555522 22333333333 566666665554 111 123567777788889999999999998888
Q ss_pred hcCCCch
Q 040965 263 ELQPKHC 269 (311)
Q Consensus 263 ~~~~~~~ 269 (311)
-++|...
T Consensus 326 ~ldp~~s 332 (549)
T PF07079_consen 326 ILDPRIS 332 (549)
T ss_pred hcCCcch
Confidence 8888753
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.51 E-value=0.00039 Score=43.60 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC---chhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLE----LQPK---HCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+++.+...|...|++++|+..|+++++ .+++ ...++..++.++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566677778888888888888888775 2222 234677888888888888888888887654
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0031 Score=51.36 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
++..|.-+|.+.+++.+|++...+. .. ++|+...-.=..++...|+++.|+..|+++++..|.+..+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5677888999999999999998887 33 456777777778899999999999999999999999987777887777666
Q ss_pred chhHH-HHHHHHHHHHc
Q 040965 283 ERWNR-ATDLRKAMVEA 298 (311)
Q Consensus 283 g~~~~-A~~~~~~m~~~ 298 (311)
....+ ..++|..|...
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 55554 47888888753
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00071 Score=41.75 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
..|.+.+++++|.++++.+ ...|+ ...+......+...|++++|...++++.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 44554 45555666778888888888888888888888776443
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.007 Score=46.47 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=98.5
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
-..+-++++..+.-.|.+.-....+.+..+...+-+......+...-.+.|+.+.|..+|+++.+. .-+.+.-+.+.++
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHH
Confidence 345566788888888999999999999988765667888888999999999999999999987654 3333333333333
Q ss_pred -----HHHHhcCCHHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 -----DLLGRAGLLSEAKEFMRSMP-FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 -----~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..|.-.+++..|...+.+.. ..| |+...|.-.-+..-.|+...|.+.++.+....|...
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 34556778888888888872 222 333333322233347889999999999998888753
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.49 E-value=0.00033 Score=38.34 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
.++..+...|...|++++|.++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778888999999999999999999999999888877654
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.04 Score=45.01 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=174.2
Q ss_pred cCChHHHHHHHHHh---ccccHHHHHHHHHH--HHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 8 NGDMDSAILLFENM---LKRDVVSWTSIING--FVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 8 ~g~~~~A~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
.|+-..|.++-.+. +..|-...-.++.+ -.-.|+++.|.+-|+-|.. .|..... -|=..|......|..
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRll-GLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLL-GLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHH-hHHHHHHHHHhcccH
Confidence 46666666666554 23354444445544 3457999999999999975 2332221 111222333446778
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc-----ccchHh--hHHHHHHHH---HcCCCHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM-----VIKDVC--TWNAMISSL---ASNSREKEAL 152 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~l~~~~---~~~~~~~~a~ 152 (311)
+.|..+-+..-..-.. -...+...+...|..|+|+.|+++++.- ++++.. .-..|+.+- .-.-+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888887777665322 3567788899999999999999999865 333322 111222221 1234566676
Q ss_pred HHHHHHHHcCCCCcHHH-HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--
Q 040965 153 VMFDEMKEKGLRANEIT-FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-- 229 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 229 (311)
..-.+..+ ..||..- -..-..++.+.|+..++-.+++.+=+. .|.+..+...+ +.+.|+. +..-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHH
Confidence 66655544 3555432 233456789999999999999999765 44444443322 3355543 33222222
Q ss_pred --CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-cchhHHHHHHHHHHHH
Q 040965 230 --PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG-LERWNRATDLRKAMVE 297 (311)
Q Consensus 230 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 297 (311)
..+| +..+-..+..+-...|++..|..--+.+.+..|... .|..|.+.-.. .|+-.++...+.+-.+
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2344 446667777888899999999998888888888875 88888887664 4999999888877654
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0075 Score=47.31 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHhC-CCCCCc-chH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GLLSEAKEFMRSM-PFEPDA-SVL 238 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~~-~~~ 238 (311)
+-|...|..|..+|...|+.+.|..-|....+-.| +++..+..+..++... ....++.++|+++ ...|+. .+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44788999999999999999999999999886533 3444566666655432 2456788899988 555644 455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
..|...+...|++.+|...|+.|.+..|.+. .+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 5555678899999999999999999887764 4555544
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.021 Score=46.79 Aligned_cols=261 Identities=11% Similarity=0.033 Sum_probs=150.5
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC-----CCCc--hHHHHHHHHHh
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-----VRPN--EATYVSVLSSC 73 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~p~--~~~~~~ll~~~ 73 (311)
.+.+..++..|+..+...++ | ++.-|..-+..+...|++++|.--.+.-.+..++ .+|+ ......++.++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 45667778888888877643 3 5556667777788888888888777666553211 1111 11222333333
Q ss_pred hhhhhcCc---chhHHHHHHHHhhccC-CchHHHHHHH-HHHHhhcCCHHHHHHHHHHcccchH-hhHHHHHH--HHHcC
Q 040965 74 AGLVNEGG---LYLGKQVHGYILRNEI-VLSVFMGTAL-IDLYGKVGCLERAIRVFKSMVIKDV-CTWNAMIS--SLASN 145 (311)
Q Consensus 74 ~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~ 145 (311)
..+. ..+ ...++..++....... +|....+-.+ ..++.-.|+.++|.+.-..+.+.|. ..+...++ ++--.
T Consensus 138 ~~~~-~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLK-SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhh-hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 2222 111 1112222222222221 2333344333 4567778899988888777655543 23333443 33456
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHH-------------HHHHHHHHccccHHHHHHHHHHhhccC--CCccchhhHHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITF-------------VAVLTACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVV 210 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 210 (311)
++.+.|...|++.+.. .|+...- ..=.+-..+.|++..|.+.|.+.+... +..|+...|....
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7888888888887765 3443221 111233467889999999998887421 2233455566666
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
....+.|+..+|+.--+.. .+.|.. ..+..-..++...+++++|.+-++++.+...+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777889999998887776 433321 22333334566778888888888888764433
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.0078 Score=42.94 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc----cCCCccchhhH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG----KFEVVPIMEHY 206 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 206 (311)
.+...++..+...|++++|..+.+.+.... +.+...|..++.+|...|+...|.+.|+.+.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566777778888888888888888763 44788888888888888888888888877643 24677776543
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.00069 Score=56.24 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS----VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
+...++.+..+|...|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567888999999999999999999996 7778764 4888889999999999999999999987322 232211
Q ss_pred H--HHhccchhHHHHHHHHHHHHccCCC
Q 040965 277 N--IHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 277 ~--~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
. .+....+..+..++++.+.+.|...
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 1 1122334456777888888777643
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.033 Score=42.96 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH-----H
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL-----T 175 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~-----~ 175 (311)
+.++.++...|.+.-....+.+.++. ++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34455555556666666666665433 44555566666666777777777777665443233333333322 2
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
.|.-++++..|...+.++... .+.|+...|.-.-+..-.|+...|.+.++.| ...|...+.++++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred heecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 344556666666666666653 1223333444444444566777777777777 5556665555444
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.074 Score=47.07 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 247 (311)
.+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-++..|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 344444556677888888888766664 5677778778888889999988877777664 25677788899999
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|+.++|.+++.+.... .-...+|.+.|++.+|.++--
T Consensus 757 ~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 99999998887764322 156677888888888776543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.40 E-value=0.0011 Score=41.48 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555544443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.38 E-value=0.0027 Score=43.75 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHH---------------HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMK---------------EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 197 (311)
.++.+++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555554321 11234556666666666666666666666666666666
Q ss_pred CCccchhhHHHHHH
Q 040965 198 EVVPIMEHYGCVVD 211 (311)
Q Consensus 198 ~~~~~~~~~~~l~~ 211 (311)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 65555555655554
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.028 Score=48.87 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=139.3
Q ss_pred hhhhcCChHHHHHHHHHh-----------ccccHHHHHHHHHHHHhcCCH--hHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 040965 4 GYVKNGDMDSAILLFENM-----------LKRDVVSWTSIINGFVRNGCF--GEAICVFKNMMGNVNLVRPNEATYVSVL 70 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~p~~~~~~~ll 70 (311)
-|...|.+++|..+---- ...+...++..=++|.+..+. -+.+.-++++.++| -.|+........
T Consensus 565 q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg--e~P~~iLlA~~~ 642 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRG--ETPNDLLLADVF 642 (1081)
T ss_pred hhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC--CCchHHHHHHHH
Confidence 355667777775442111 011333455555666665543 34555566777777 678766544433
Q ss_pred HHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc---------cc-----hHhhHH
Q 040965 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV---------IK-----DVCTWN 136 (311)
Q Consensus 71 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-----~~~~~~ 136 (311)
. - .|.+.+|.++|.+- |.+ |..+..|-....++.|.++..... ++ +..-=.
T Consensus 643 A---y---~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 643 A---Y---QGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred H---h---hhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 2 1 55588888887543 332 334555555555666665554321 11 111112
Q ss_pred HHHHHHHcCCCHHHHHHHHHH------HHHcCCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH
Q 040965 137 AMISSLASNSREKEALVMFDE------MKEKGLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~------m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (311)
+....+...|+.++|..+.-+ +.+-+.+. +..+...+...+-+...+..|-++|.+|-+ ..
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~k 777 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LK 777 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HH
Confidence 345666778888888776432 22222222 344555666666677788888888888842 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCcch-HHH----------HHHHHHhcCChhHHHHHHHHHHh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-PFEPDASV-LGA----------LLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~----------l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+++.+...+++++|..+-++. ...||+.. |.. --.+|.+.|+-.+|.++++++..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 5678888999999999999988 55666532 222 22567888999999999988864
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.00085 Score=54.60 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=120.9
Q ss_pred hhhhcCcchhHHHHHHHHhhccCCc---hHHHHHHHHHHHhhcCCHHHHHHHHHH-------cccc--hHhhHHHHHHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIVL---SVFMGTALIDLYGKVGCLERAIRVFKS-------MVIK--DVCTWNAMISSL 142 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~--~~~~~~~l~~~~ 142 (311)
++++.|+......+|+..++.|... =..+|..|.++|.-.+++++|++.-.. +-.. ..-+-..|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 3444556666666666666655321 123445555666666666666654321 0000 111222334444
Q ss_pred HcCCCHHHHHHHHHHH----HHcCCCC-cHHHHHHHHHHHHccc--------------------cHHHHHHHHHHhhc--
Q 040965 143 ASNSREKEALVMFDEM----KEKGLRA-NEITFVAVLTACARAQ--------------------LVELGLELFHSMLG-- 195 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m----~~~~~~~-~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~~~~-- 195 (311)
-..|.+++|.-...+- .+.|-.. ....+..+...|...| .++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555432221 1222111 1233444455554433 23445555543221
Q ss_pred -cCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHh-------CCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh--
Q 040965 196 -KFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS-------MPFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLE-- 263 (311)
Q Consensus 196 -~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 263 (311)
+.|.. .--..|..|...|.-.|+++.|+..-+. .|.+. ....+..+..++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 1224567777777778999999866432 23222 335677788889999999999999988763
Q ss_pred --cCCC--chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 264 --LQPK--HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 264 --~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++-. ....-..|...|.-...+++|+.++.+-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3322 33455688899998899999999887643
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.32 E-value=0.059 Score=43.17 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred hhhcCChHHHHHHHHHhcc------cc------HHHHHHHHHHHHhcC-CHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENMLK------RD------VVSWTSIINGFVRNG-CFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~------~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 54 (311)
..++|+++.|..++.++.. |+ ...|+ +.....+.+ +++.|...+++..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYN-IGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHH
Confidence 3578999999999998832 21 12344 344445555 88877776666543
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.29 E-value=0.05 Score=41.91 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=39.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+-|.+.|.+..|..-++++++.-|+.+ ..+..+..+|...|-.++|.+.-+-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3557788888888888888887665543 355567778888888888877765543
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.11 Score=45.35 Aligned_cols=205 Identities=10% Similarity=0.026 Sum_probs=122.3
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch--HhhHH-----HHHHHHHcCCCHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD--VCTWN-----AMISSLASNSREKEALVM 154 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-----~l~~~~~~~~~~~~a~~~ 154 (311)
+-+...-++++.++|..|+... +...++-.|++.+|-++|.+--..+ ...|+ -..+-+...|..++-..+
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3344445567777887787643 4566677788888888887663221 12222 134455666666665555
Q ss_pred HHHHHHc--CCCCcHHHHHHHHHHHHccccHHHHHHHHHH------hhcc--CCCccchhhHHHHHHHHHhcCCHHHHHH
Q 040965 155 FDEMKEK--GLRANEITFVAVLTACARAQLVELGLELFHS------MLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKE 224 (311)
Q Consensus 155 ~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (311)
.++=.+. ++.-.. .....+...|+.++|..+.-+ +.+. .-...+..+...+..-+.+...+.-|.+
T Consensus 693 ~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 5432111 111111 222334455665555544211 1100 0012244556666666667788999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH----------HHHHHHHHhccchhHHHHHHHHH
Q 040965 225 FMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR----------YVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 225 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+|.+|+.. .+++......+++++|..+-++.-+..|+-... |...-.+|.+.|+-.+|..++++
T Consensus 769 IF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 769 IFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999632 456777889999999999988877765553222 33444578899999999999988
Q ss_pred HHHcc
Q 040965 295 MVEAG 299 (311)
Q Consensus 295 m~~~~ 299 (311)
+....
T Consensus 843 Ltnna 847 (1081)
T KOG1538|consen 843 LTNNA 847 (1081)
T ss_pred hhhhh
Confidence 86543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0089 Score=46.29 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---chhHHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPK---HCGRYVVLSN 277 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 277 (311)
|+.-++.| +.|++..|...|... .-.|+. ..+--|..++...|+++.|..+|..+.+..|+ -++++..|+.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 445566666665555 112221 22333555566666666666666666654433 3345556666
Q ss_pred HHhccchhHHHHHHHHHHHHc
Q 040965 278 IHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.13 E-value=0.075 Score=40.68 Aligned_cols=220 Identities=20% Similarity=0.123 Sum_probs=104.8
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc-cCCchHHHHHHHHHHHhhc
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPN---EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKV 114 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 114 (311)
.+....+...+....... +. ...+...... ....+.+..+...+...... ........+......+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELL----PNSDLAGLLLLLALA---LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcC----ccccchHHHHHHHHH---HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 355555666666665532 22 2222222221 12244455555555555442 2233344445555555566
Q ss_pred CCHHHHHHHHHHcccc--hH-hhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHH
Q 040965 115 GCLERAIRVFKSMVIK--DV-CTWNAMIS-SLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 115 g~~~~A~~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+++..+.+.+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 6666666666655331 11 22222222 55566666666666666543211 0122233333333455566666666
Q ss_pred HHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 189 LFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
.+...... ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....
T Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666542 112 2344555555555666666666666555 33333 2223333333334455666666666666555
Q ss_pred CC
Q 040965 266 PK 267 (311)
Q Consensus 266 ~~ 267 (311)
|.
T Consensus 267 ~~ 268 (291)
T COG0457 267 PD 268 (291)
T ss_pred cc
Confidence 54
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=97.09 E-value=0.057 Score=38.72 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=47.0
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|..+|.-+.-.++ -+..-+..|..++-..+++++|+..|... ...|+..+.....++...|+.+.|...|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 6666666666666655442 23444555666666666666666666544 2234455555566666666666666666
Q ss_pred HHHHH
Q 040965 156 DEMKE 160 (311)
Q Consensus 156 ~~m~~ 160 (311)
.....
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 65554
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.013 Score=40.41 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHc-------------------ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSM-------------------VIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..++.+++.++++.|+++....+++.. ..|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345666777777777777777777654 2347788999999999999999999999997654
Q ss_pred -CCCCcHHHHHHHHHHHH
Q 040965 162 -GLRANEITFVAVLTACA 178 (311)
Q Consensus 162 -~~~~~~~~~~~l~~~~~ 178 (311)
+++.+..+|..|+.-+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 66768889998887543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.08 E-value=0.023 Score=39.68 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHhcCCHHHHHHHHHhC--CCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 213 LGRAGLLSEAKEFMRSM--PFE--P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~--~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..+.|++++|.+.|+.+ ..+ | ....-..|+.+|.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34556666666666555 111 1 113334455556666666666666666666665543
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.08 E-value=0.089 Score=44.52 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (311)
++.-.-+..+..+-++.-.++++ +.||-.+.-+++. .-. ..-..++++++++.++.|-. .+-...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe----i~pdCAdAYILLA---EEe-A~Ti~Eae~l~rqAvkAgE~-------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE----INPDCADAYILLA---EEE-ASTIVEAEELLRQAVKAGEA-------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhhcc---ccc-ccCHHHHHHHHHHHHHHHHH-------hhchhh
Confidence 34444566777777777777777 6787766666653 111 22378888888888776511 000100
Q ss_pred --hhcCCHHHHHHHHHHcccch----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHH
Q 040965 112 --GKVGCLERAIRVFKSMVIKD----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVE 184 (311)
Q Consensus 112 --~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~ 184 (311)
...|.. ++....++ ...-..+..+.-+.|+.++|++.+++|.+....- .......|+.++...+.+.
T Consensus 239 ~~~~~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhcccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 011111 11111222 2222346666677888888888888887653111 2346677888888888888
Q ss_pred HHHHHHHHhh
Q 040965 185 LGLELFHSML 194 (311)
Q Consensus 185 ~a~~~~~~~~ 194 (311)
++..++.+.-
T Consensus 313 d~q~lL~kYd 322 (539)
T PF04184_consen 313 DVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhc
Confidence 8888888864
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.096 Score=41.25 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=64.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
.....|++.+|..+|+...+.. +-+...-..++.+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4445566666666666555442 112334445555566666666666665555432 11111111112233333444444
Q ss_pred HHHHHHHhCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCchhHHHHHHHHHhccc
Q 040965 221 EAKEFMRSMPFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 221 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 283 (311)
+..++-++..-.| |...-..+...+...|+.+.|.+.+-.+++. +-.+..+-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3344444442234 3344444445555566666665554444432 2223345555555555444
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.05 E-value=0.18 Score=43.71 Aligned_cols=162 Identities=17% Similarity=0.072 Sum_probs=113.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccch
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKG-LRANE-----ITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIM 203 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 203 (311)
....+++...=.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666677899999999999876542 22221 234444444443 45788999999999865 6776
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHhCC-CCC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 204 EHYGCV-VDLLGRAGLLSEAKEFMRSMP-FEP-----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 204 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
..|... ...+...|++++|.+.|++.. ... ....+--+...+...+++++|...+.++.+...-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 666543 356678899999999999762 111 2233444556678899999999999999987776766776554
Q ss_pred H-HHhccchh-------HHHHHHHHHHHHc
Q 040965 277 N-IHAGLERW-------NRATDLRKAMVEA 298 (311)
Q Consensus 277 ~-~~~~~g~~-------~~A~~~~~~m~~~ 298 (311)
. ++...|+. ++|.++|.+....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4 45567777 8888998887653
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.087 Score=42.69 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=122.8
Q ss_pred cCcchhHHHHHHHHhhcc--CCchHHHHHHHHHHHhhcCCHHHHHHHHHH-c---cc---c--hHhhHHHHHHHHHcCCC
Q 040965 79 EGGLYLGKQVHGYILRNE--IVLSVFMGTALIDLYGKVGCLERAIRVFKS-M---VI---K--DVCTWNAMISSLASNSR 147 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~---~~---~--~~~~~~~l~~~~~~~~~ 147 (311)
..+.++++..|.+.+..- ......++..+..+.++.|.+++++..--. | .+ . --..|..+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555444321 111234455566667777777766553221 1 11 1 12345555566655556
Q ss_pred HHHHHHHHHHHHHc-CCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCCH
Q 040965 148 EKEALVMFDEMKEK-GLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 148 ~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+--. ......++..|...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 66666655543321 2222 113344566777778888888888887664211 112345678888888888888
Q ss_pred HHHHHHHHhC-------CCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHHHHHHHHhc
Q 040965 220 SEAKEFMRSM-------PFEPDASVLG-----ALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYVVLSNIHAG 281 (311)
Q Consensus 220 ~~A~~~~~~~-------~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 281 (311)
++|.-+..+. ++.--..-|. .+.-++...|....|.+..+++.++. +........+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 8877665444 2221112222 23345778888888888888877622 2223345577888888
Q ss_pred cchhHHHHHHHHHH
Q 040965 282 LERWNRATDLRKAM 295 (311)
Q Consensus 282 ~g~~~~A~~~~~~m 295 (311)
.|+.+.|..-|+..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 88888777766643
No 235
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.13 Score=41.95 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+.+..+.-+...|+...|.++-.+.++ |+..-|..-+.+++..+++++...+-+. . .+|..|...+.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCC
Confidence 3556667777889999999999999984 8999999999999999999988876543 2 23357889999999999
Q ss_pred hhHHHHHHHHHH
Q 040965 284 RWNRATDLRKAM 295 (311)
Q Consensus 284 ~~~~A~~~~~~m 295 (311)
+..+|..++.++
T Consensus 252 ~~~eA~~yI~k~ 263 (319)
T PF04840_consen 252 NKKEASKYIPKI 263 (319)
T ss_pred CHHHHHHHHHhC
Confidence 999999998774
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.04 E-value=0.0074 Score=50.37 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM----EHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|.+.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999999999999999999999985 46663 35899999999999999999999998
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.044 Score=43.84 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=100.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH----HHHHHHHHhcCCH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY----GCVVDLLGRAGLL 219 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 219 (311)
..|++.+|-..++++.+. .+.|...+...=.+|+-.|+.+.-...++++..+ ..|+...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457777777777777765 3556777777777888888888888888887753 23443222 2233345577888
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc----hhHHHHHHHHHhccchhHHHHHHHH
Q 040965 220 SEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH----CGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 220 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
++|++.-++. .+.| |....+++...+...|++.++.++..+-...-..+ ..-|-...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777 4444 44666667777777888888887777654311111 1124445555666678888888887
Q ss_pred HHHHccCCCCCc
Q 040965 294 AMVEAGIRKIPA 305 (311)
Q Consensus 294 ~m~~~~~~~~~~ 305 (311)
.-+-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444444433
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.14 Score=40.31 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH---HHHHHHhcCChhH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA---LLGACKIHGAVDL 253 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 253 (311)
....|+..+|...|+..... .+-+...--.++.+|...|+.+.|..++..++..-....+.. -+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555555432 111223344455555555555555555555532222222222 1222333333333
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...+-++ ...+|++...-..+...+...|+.++|.+.+-.+.++
T Consensus 222 ~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3222222 2235555555555555555555555555554444443
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.032 Score=43.29 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---c-chHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---A-SVLGAL 241 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-~~~~~l 241 (311)
..|+.-+. +.+.|++..|..-|...++.+.- .-....+-.|..++...|+++.|..+|..+ .-.|+ . ..+--|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 35766664 45677799999999988875321 123345677889999999999999988887 22232 2 445556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.......|+.++|..+|+++.+.-|..+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 666788999999999999999888887644
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.84 E-value=0.07 Score=37.34 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=28.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 141 SLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
...+.|++++|.+.|+.+...-. +-....-..++.+|.+.++++.|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33445566666666655554410 112334445555555566666666555555544
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=96.72 E-value=0.049 Score=45.76 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 040965 182 LVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGR---------AGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG 249 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 249 (311)
..+.|..+|.+........|+ ...|..+..++.. .....+|.++.++. .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456777778877744345554 3344444433332 12334455555555 3344 4455555555556677
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+++.|...|+++..++|+...+|...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7888888888888888888778887777778888888888888775543
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.12 Score=43.10 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchH-HHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVL-GALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 245 (311)
..|-..+++-.+..-++.|..+|-++.+..-+.+++..+++++..+ ..|+...|..+|+-- ...||...| .-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566677777778889999999999987722567888889988766 567888999999875 556777666 3455567
Q ss_pred HhcCChhHHHHHHHHHHhcCCC--chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 246 KIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...++-+.|..+|+..++.-.+ -...|..++.--..-|+...+..+-++|.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7889999999999977652222 2458999999999999998888888877654
No 243
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.06 Score=38.78 Aligned_cols=136 Identities=8% Similarity=0.028 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH-H
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-M 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 103 (311)
+...|..-+. +.+.+..++|+.-|..+.+.|-+-.| ....+.+.....+.|+...|...|.++-.....|-.. -
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp----vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP----VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch----HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 3445555555 46778889999999998887632223 3344444445555888999999999887765444332 1
Q ss_pred HH--HHHHHHhhcCCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 104 GT--ALIDLYGKVGCLERAIRVFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 104 ~~--~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.. .-.-.+...|-++......+.+..+ -...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 1233456778888888877766332 22334556667778899999999999887654444
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.63 E-value=0.28 Score=42.00 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHH
Confidence 33445555555555544332 33455555555555555555555555432 13333334444555555555
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+.+....+ |. ++....++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44444332 11 2223333334455555555554443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.62 E-value=0.14 Score=36.16 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ .+.....+.. .++......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 4456777777788888888888887776 356777888888887653 3444444442 112233455677778
Q ss_pred hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH-GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
+.+.++++.-++.+++.. ...+..+... ++++.|.+++++ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888888888888888622 2223333333 788888887775 2345577777766653
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.044 Score=43.82 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=95.4
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHH----HHHHhcCC
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALL----GACKIHGA 250 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~----~~~~~~g~ 250 (311)
....|+.-+|-..+++++++ .+.|...+.--=++|...|+.+.-...++++ ...||.+.|..+= .++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888889999874 5667777777778999999999999999998 4467776655443 34568999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+++|++.-+++.+++|.+..+-..+...+.-.|++.++.++..+-
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999888888999999999999999887653
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.028 Score=43.83 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=69.3
Q ss_pred HHHHHHcc--cchHhhHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc------------
Q 040965 121 IRVFKSMV--IKDVCTWNAMISSLA-----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ------------ 181 (311)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------------ 181 (311)
+..|..+. ++|..+|.+.+..+. +.++.+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444443 556677777776664 34667777777888888888888888888887765432
Q ss_pred ----cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 182 ----LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 182 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+-+-++.++++|... |+.||..+-..|++++.+.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 345677888888655 8888888888888888777654
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.067 Score=43.91 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccc------------------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIK------------------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
-.+.|.+.|++..|...|+.++.- -..+++.+.-++.+.+++..|+...++.+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 356788889999888888775211 12345556666666666666666666666553 34555
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
....=..+|...|+++.|+..|+++++
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 555555666666666666666666663
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.035 Score=37.92 Aligned_cols=90 Identities=20% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHH---HHHHhc
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALL---GACKIH 248 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~---~~~~~~ 248 (311)
+....|+++.|++.|.+.+.- .+.....||.-..++.-.|+.++|++-+++. |-+ ......+.+ ..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 566778888888888877742 2334567888888888888888888777766 211 222233333 236677
Q ss_pred CChhHHHHHHHHHHhcCCCc
Q 040965 249 GAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~ 268 (311)
|+.+.|..-|+.+-+++.+-
T Consensus 129 g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH
Confidence 88888888888777776553
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.50 E-value=0.19 Score=40.86 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc-----CCch
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-----IVLS 100 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 100 (311)
.+|-.+.+++-+.-++.+++.+-..-..... ..|. ...+..+.-+.+.++ .+.++++++.|+...+-. .-..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceee
Confidence 3566677777777777777777666554321 3331 111222222222233 344888888887776532 1123
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc-------chH------hhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCC
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI-------KDV------CTWNAMISSLASNSREKEALVMFDEMKE----KGL 163 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~ 163 (311)
..++..|.+.|.+..|+++|.-+..+... .|. .+.-.|.-++...|....|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 56788889999999999988777665511 121 1222344566777888888888777543 343
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.| -......+.+.|...|+.|.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33 23445567778889999999888887765
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.46 E-value=0.16 Score=34.91 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (311)
.....+..+..+|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.++ |++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3445567777888888888888887653 3567777778888888888888888888888776 554
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.46 E-value=0.16 Score=34.90 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+.-.|..++..++..+..... +..-++.++.-....-+-+-..++++.+-+.+++.|-. -.-.++.+|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 345688888888888876542 44455555544444455555666666665443333321 122344444444332
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..-...-+.....+|+-+.-.++++.+.+.+..++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2333445567778888888888888887655556668888999999999999999999998888864
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.35 E-value=0.023 Score=44.76 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++..++..+...|+++.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444444444455555554444444 2222 34444455555555555555555444444
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.33 E-value=0.27 Score=42.11 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=85.7
Q ss_pred HHHhhcCCHHHHHHHHH--Hcccc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 109 DLYGKVGCLERAIRVFK--SMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
....-.++++++....+ ++.+. +..-.+.++..+-+.|.++.|+.+...-. .-| ....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHH
Confidence 33445677777666554 22211 33446677777778888888887754311 112 33456788888
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
|.++.++. ++...|..|.+...+.|+++-|++.|++.+ -+..|+-.|...|+.+...++.+.+...+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87653322 255578888888888888888888888875 34556666777888777777776665443
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
-.+ ....++.-.|+.++..+++.
T Consensus 404 ~~n-----~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 DIN-----IAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -HH-----HHHHHHHHHT-HHHHHHHHH
T ss_pred CHH-----HHHHHHHHcCCHHHHHHHHH
Confidence 322 22223333345555544443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.33 Score=37.25 Aligned_cols=50 Identities=6% Similarity=-0.096 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh----cCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLE----LQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.|-.+.-..|+..|...++.-.. .+|.+..+...|+.+|- .|+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 33334445566666666665443 23444445555555543 3444444433
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.72 Score=41.79 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred hhhhhcCChHHHHHHHHHhccc-c--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLKR-D--VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+.+++..-++-|+.+-+.-..+ + ........+.+.+.|++++|..-|-+.+.. +.|.... . ...+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s~Vi-----~---kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPSEVI-----K---KFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChHHHH-----H---HhcCH
Confidence 4455566666666665554221 1 123444556667889999999888887643 3443322 1 11223
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
.+...-..+++.+.+.|.. +...-+.|+++|.+.++.++-.++.+...+-. ..-....+..+.+.+-.++|..+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 3366777788888888865 34444678999999999988888877664111 111344556666666666666655443
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.. .......++ -..+++++|++++..+.
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 21 333333333 45688888888887663
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.18 E-value=0.17 Score=34.70 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=26.6
Q ss_pred hhhcCChHHHHHHHHHhc---cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENML---KRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
++..|+++.|++.|.+.+ ......||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555555555542 12445555555555555555555555555544
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.18 E-value=0.69 Score=39.46 Aligned_cols=98 Identities=12% Similarity=0.169 Sum_probs=66.9
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCc--chHHHHHHHHH
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-F-EPDA--SVLGALLGACK 246 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 246 (311)
..+..++.+.|+.++|++.++++++......+......|+.++...+.+.++..++.+-. + -|.. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667788999999999999998753333345577889999999999999999998872 2 2433 34554432222
Q ss_pred hcCC---------------hhHHHHHHHHHHhcCCCc
Q 040965 247 IHGA---------------VDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 247 ~~g~---------------~~~a~~~~~~~~~~~~~~ 268 (311)
..++ -..|.+.+.++.+.+|--
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2222 123557778877766654
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.95 Score=40.36 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=106.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-------hhhhcCcchh
Q 040965 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA-------GLVNEGGLYL 84 (311)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~~~~~~ 84 (311)
+.|.++.++ .|.+..|..+.....+.-.++.|...|-+... .|.......|-.... ...--|++++
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-----Y~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-----YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-----ccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 344444333 45677888888877777778888777766542 222211111111000 0111456999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
|+++|-++-++. ..+..+.+.|++-...++++.-... -...|+.+...+.....|++|.++|..-.
T Consensus 753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998877664 2456677778888877777653211 12355555555555555555555554321
Q ss_pred H---------------------cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 040965 160 E---------------------KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 160 ~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (311)
. ...+-+....-.+..++.+.|.-++|.+.+-+.. .|. .-+..|...++
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHH
Confidence 0 1122344445556666666666666666554432 111 22445566667
Q ss_pred HHHHHHHHHhCC
Q 040965 219 LSEAKEFMRSMP 230 (311)
Q Consensus 219 ~~~A~~~~~~~~ 230 (311)
+.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 777777766653
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.98 Score=40.45 Aligned_cols=280 Identities=13% Similarity=0.057 Sum_probs=158.3
Q ss_pred ChhhhhhcCChHHHHHHHHHhcccc---HHHHHHHHHHHHhcCCH--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRD---VVSWTSIINGFVRNGCF--GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 75 (311)
+|+-+...+.+..|+++-..+..|. ..+|.....-+.+..+. +++++.+++=.... ..|. .+|..+.. .
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~-iSy~~iA~---~ 516 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPG-ISYAAIAR---R 516 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCc-eeHHHHHH---H
Confidence 3566777888888988888885553 45666666666665332 34555555444322 2333 33443333 2
Q ss_pred hhhcCcchhHHHHHHHHhhccCC----chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHH----------H
Q 040965 76 LVNEGGLYLGKQVHGYILRNEIV----LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMI----------S 140 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~----------~ 140 (311)
....|+.+.|..+++.=.+.+.. .+..-+...+.-..+.|+.+-...++-.+... +...+...+ .
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 23377788888877654433211 11222334455556667777666666555222 111111111 1
Q ss_pred HHHc------------CCCHHHHHHHHH--HHHH----cCCCCcHHHHHHHHHHHHcccc----------HHHHHHHHHH
Q 040965 141 SLAS------------NSREKEALVMFD--EMKE----KGLRANEITFVAVLTACARAQL----------VELGLELFHS 192 (311)
Q Consensus 141 ~~~~------------~~~~~~a~~~~~--~m~~----~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~ 192 (311)
-+++ .++-.++...|. .... .|..|+. .....++.+... ..+-+.+.+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 122222222111 1000 1222322 223333443332 2222334444
Q ss_pred hhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
+..+++..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.. .+ |.-|
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---ks--PIGy 747 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---KS--PIGY 747 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CC--CCCc
Confidence 44444544444456666667778999999999999997 588899988889999999998877765543 22 3368
Q ss_pred HHHHHHHhccchhHHHHHHHHHH
Q 040965 273 VVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.-...+|.+.|+.++|.+++-+.
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhcc
Confidence 88889999999999999998664
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.09 E-value=0.012 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.200 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555556666666666666666666666664
No 262
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.03 E-value=0.77 Score=38.66 Aligned_cols=135 Identities=15% Similarity=0.184 Sum_probs=103.8
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH-H
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-G 207 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 207 (311)
.-..+|-..+++-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+.-+.. -||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345667778888888888999999999999888 5678888888887655 68888999999887765 3343333 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM--PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..+.-+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5566777889999999999966 33333 5778888887788899988888888888777764
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.075 Score=39.31 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=73.5
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcC
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHG 249 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 249 (311)
.-+++.|++++|..-|..++..+...+. ...|..-..++.+.+.++.|++-..+. .+.|+. .....-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4578899999999999999875322221 233444556777889999888877666 444432 23333345688889
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.+++|+.-|+++.+.+|....+-...++.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999876666555554
No 264
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.00 E-value=0.098 Score=40.91 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHHhc--cccHHHHHHHHHHHHh-----cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-------------
Q 040965 15 ILLFENML--KRDVVSWTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA------------- 74 (311)
Q Consensus 15 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~------------- 74 (311)
++.|..+. ++|..+|-+.+..+.. .+.++=....++.|.+-| +.-|..+|+.|++.+-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG--VerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG--VERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc--chhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 45555554 5577888888877754 366777777788888888 9999999999997531
Q ss_pred --hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 75 --GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 75 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
.+.++ -+=+++++++|...|+.||-.+-..|+++|.+.+-
T Consensus 132 F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12222 45578899999999999999999999999988765
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.98 E-value=0.64 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 133 CTWNAMISSLASNSREK---EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+...++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+.+.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655543 344455555433111 2334444455555567777777777777764
No 266
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.87 E-value=0.021 Score=28.80 Aligned_cols=30 Identities=27% Similarity=0.127 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
+..+...+...|++++|.+.+++++++.|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666666665554
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=0.58 Score=35.59 Aligned_cols=216 Identities=19% Similarity=0.108 Sum_probs=155.5
Q ss_pred chhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcc-----cchHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMV-----IKDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
...+...+.......... ....+......+...+++..+...+.... ......+......+...+++..+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555556666655543221 34666777888889999999999888764 235566777778888889999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHH-HHHccccHHHHHHHHHHhhccCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLT-ACARAQLVELGLELFHSMLGKFEV--VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
.........+ ......... .+...|+.+.|...+.+.... .. ......+......+...++.+.+...+.+. ..
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 9888754333 222333333 788999999999999998542 21 123334444455567889999999999888 44
Q ss_pred CCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 232 EPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 232 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.++ ...+..+...+...++++.+...+.......|.....+..+...+...+.++++...+.+..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 444 56677777888889999999999999999888754566666666667777899998888776643
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.80 E-value=1.8 Score=41.06 Aligned_cols=82 Identities=9% Similarity=-0.019 Sum_probs=42.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcch--HHHHHHHHHh
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV--LGALLGACKI 247 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~ 247 (311)
|.+....+.....+++|--.|+..-+ ...-+.+|..+|++.+|+.+..++....+... -..|+..+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 33344444555666666655555421 12234566666777777766666632222222 2445555666
Q ss_pred cCChhHHHHHHHHH
Q 040965 248 HGAVDLCHEVGRRL 261 (311)
Q Consensus 248 ~g~~~~a~~~~~~~ 261 (311)
.++.-+|-++..+.
T Consensus 1012 ~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEY 1025 (1265)
T ss_pred cccchhHHHHHHHH
Confidence 66665555555544
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.70 E-value=0.64 Score=35.13 Aligned_cols=163 Identities=15% Similarity=0.056 Sum_probs=96.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++..|.+-+...-.....+|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46788888888899999999999999988764332333333333 34456888888877776655423333333333333
Q ss_pred HHHHhcCCHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------hhHHHHHHHHHhcc
Q 040965 211 DLLGRAGLLSEAKEFM-RSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-------CGRYVVLSNIHAGL 282 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 282 (311)
. ..-++.+|..-+ ++.. ..|..-|...+-.+. .|++. .+.+++++.....++ ..+|..|+.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 334666665444 4442 233333433332221 12221 123444444433232 35788899999999
Q ss_pred chhHHHHHHHHHHHHccC
Q 040965 283 ERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~ 300 (311)
|+.++|..+|+-.+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987765543
No 270
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.68 E-value=1.6 Score=39.58 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=19.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
..++++.+...+..|-........-..-+++++...|+.++|...|++.
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444433211122222333444444444444444444443
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.67 E-value=0.04 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~ 65 (311)
.+|..+...|.+.|++++|.++|+++.+ ..|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~----~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA----LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCCHH
Confidence 4677889999999999999999999988 4566544
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=95.66 E-value=1.2 Score=37.90 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHH-cCCCCc-HHHHHHHHHHHHc---------cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 147 REKEALVMFDEMKE-KGLRAN-EITFVAVLTACAR---------AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 147 ~~~~a~~~~~~m~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+.|..+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+. -+-|......+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35678888888772 224554 3444444433322 23455677777777653 23355566666676677
Q ss_pred cCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh--HHHHHHHHHhccchhHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG--RYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++.++.|.... .....++.|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999998 667776 44444444566799999999999999999998543 2333444666654 5667666
Q ss_pred HH
Q 040965 292 RK 293 (311)
Q Consensus 292 ~~ 293 (311)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.55 E-value=0.83 Score=35.45 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..|.+.|.+..|..-++.|++.+.-.+. ...+-.+..+|...|-.++|...-+-+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4455566666666666666654211111 122333445555556555555554444
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.46 E-value=0.037 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhh
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMM 53 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 53 (311)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999964
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.41 E-value=0.039 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 62 (311)
.+|..+..+|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE----LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH----HCcC
Confidence 5788899999999999999999999987 5554
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.38 E-value=0.46 Score=35.11 Aligned_cols=95 Identities=9% Similarity=-0.062 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCC--ccch----h
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEV--VPIM----E 204 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~ 204 (311)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..++......+++..+...+.++...... +++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666677777777777777777666544433 234556666666677777777666665432111 1111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.|..| .+...+++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12221 233567888887777666
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.35 E-value=1.4 Score=36.65 Aligned_cols=148 Identities=10% Similarity=-0.043 Sum_probs=75.4
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc--chhh
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP--IMEH 205 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 205 (311)
...+|..++..+.+.|.++.|...+.++...+..+ +......-+..+-..|+..+|...++...+. .... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45567777777888888888888888776643111 2233334445566777888888877777652 1111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEF-MRSMPFEPDASVLGALLGACKIH------GAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...+...... ..+..... ........-...+..+..-.... +..+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222222333 778888899999998888877777776666
Q ss_pred Hhc
Q 040965 279 HAG 281 (311)
Q Consensus 279 ~~~ 281 (311)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.33 E-value=0.04 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.26 E-value=1.3 Score=35.84 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=79.7
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhh--c----CCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCC-
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--V----GCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSR- 147 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~- 147 (311)
+++...+++.+.+.|+..+..+|.+....... . -...+|.++|+.|.+. +..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 67778889999999988887766554333333 2 2356788888888443 33445544433 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHcccc--HHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 148 ---EKEALVMFDEMKEKGLRANE--ITFVAVLTACARAQL--VELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 148 ---~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.+.++.+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+. ++++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 35677788888887777632 334444433332222 44778888888777 88887777766553
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=1 Score=34.46 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=63.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCcc-ch---hhHHHHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLR-----ANEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVP-IM---EHYGCVVDL 212 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~---~~~~~l~~~ 212 (311)
.+..++++|...++...+.=.. .-...+..+...|-.. .++++|+..|+..-+-+...- +. ..+.-....
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 3445888888877776543100 0111122333333332 567777777777654321111 11 112222233
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCCcchH---HHHHHH--H-HhcCChhHHHHHHHHHHhcCCCc
Q 040965 213 LGRAGLLSEAKEFMRSMP---FEPDASVL---GALLGA--C-KIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~---~~p~~~~~---~~l~~~--~-~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
-...+++.+|+++|++.. ...+..-| ..++.+ | ....|.-.+...+++..+.+|.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345678888888888771 11111112 112221 1 22356667777778877788873
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.95 E-value=0.063 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
..|..+..++...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888999999999999999999887
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.76 E-value=0.16 Score=40.92 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=71.7
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 249 (311)
-.+-|+++|.+++|+..|...+ .+.| |++++..-..+|.+...+..|+.-.... .. +.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556889999999999999887 4566 7888888899999999999887766555 21 112234444444545678
Q ss_pred ChhHHHHHHHHHHhcCCCchhH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
...+|.+-++.++++.|.+...
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 8899999999999999987543
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.75 E-value=0.44 Score=37.75 Aligned_cols=81 Identities=9% Similarity=0.146 Sum_probs=59.1
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc----cCCCccchhhH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG----KFEVVPIMEHY 206 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 206 (311)
-..++..++..+...|+.+.+.+.++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45567777788888888888888888877763 44777888888888888888888887776654 24777777666
Q ss_pred HHHHHH
Q 040965 207 GCVVDL 212 (311)
Q Consensus 207 ~~l~~~ 212 (311)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666555
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.70 E-value=0.07 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+|..+...|...|++++|...|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566677777777777777766665
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.70 E-value=0.26 Score=32.06 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.-+..+-+..+......|+.....+.+.+|.+.+++..|.++|+-+..+.+...+ .|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 3356666777777788888888999999999999999999999988876543322 6766664
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.66 E-value=0.13 Score=41.46 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=65.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
-.+-|.++|.+++|+..|...... .| +.+++..-..+|.+..++..|..--...+.- .+.-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 356799999999999999987664 55 8888888888999999998887666655532 011223444445555555
Q ss_pred CCHHHHHHHHHhC-CCCCCc
Q 040965 217 GLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~ 235 (311)
|...+|.+-++.. ...|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 6666666666665 667764
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.47 E-value=4.7 Score=38.48 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
..|.+....+...+.+++|.-.|+..-+ ....+.+|...|++.+|..+-.++.. +-.--..+-..|+.-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHH
Confidence 4455555555666777777766665322 12345667777888888877776642 111112223566777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+...+++-+|-++..+..-.|. ..+..+++...+++|..+.....
T Consensus 1009 L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 7788888888888777742332 12233444555666665554443
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.46 E-value=0.19 Score=35.36 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 214 GRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
...++++++..++..+ ...|+..-...+- ..+...|++++|.++|+++.+..+..+..-..+..++.-.|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3578999999999888 4556554433332 236789999999999999988776665333333334434443
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.45 E-value=1.4 Score=32.51 Aligned_cols=96 Identities=18% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCcHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK------DVCTWNAMISSLASNSREKEALVMFDEMKEK---GLRANEITFVA 172 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ 172 (311)
..+..+...|++.|+.+.|.+.|.++... -...+..+|....-.+++..+...+.+.... |..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778999999999999999999998544 2355677888888899999999998887643 22222222112
Q ss_pred HHH--HHHccccHHHHHHHHHHhhccC
Q 040965 173 VLT--ACARAQLVELGLELFHSMLGKF 197 (311)
Q Consensus 173 l~~--~~~~~~~~~~a~~~~~~~~~~~ 197 (311)
+.. ++...+++..|-+.|-.....+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222 2456789999999888876553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.42 E-value=1.3 Score=31.83 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=41.1
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
...++.+++..++..+. -+.|...... .-...+...|++.+|.++|+++ .-.|.......|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 34556666666666665 2344332221 1223445666666666666666 32344444444544444333333333
Q ss_pred HHHHHHHhcCC
Q 040965 256 EVGRRLLELQP 266 (311)
Q Consensus 256 ~~~~~~~~~~~ 266 (311)
..-+++.+.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 33444444443
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.30 E-value=2.6 Score=34.93 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----chhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
....++..+...+.+.|.++.|...+.++....+. .+.....-+......|+..+|...+++..+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34467888888899999999999999998875421 34456666778888899999999998888733
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.30 E-value=0.29 Score=35.03 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=60.1
Q ss_pred hHHHHHHH---HHhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 205 HYGCVVDL---LGRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 205 ~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
+.+.|+.. -.+.++.+.+..++..+ -.+|.......+- ..+...|++.+|..+|+.+.+..|..+.+-..+..++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44455543 34678999999999988 5567665554433 3467899999999999999887777653333344444
Q ss_pred hccchhHHHHHHHHHHHHccCC
Q 040965 280 AGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
...|+. .=..+-+++.+.+-.
T Consensus 89 ~~~~D~-~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 89 YALGDP-SWRRYADEVLESGAD 109 (160)
T ss_pred HHcCCh-HHHHHHHHHHhcCCC
Confidence 344432 222333445555543
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.26 E-value=0.45 Score=30.67 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
|.-++.+-++.+...+..|+.....+.+.+|.+.+++..|.++|+-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 55567777888888888899999999999999999999999999988765443 3335666554
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=1.7 Score=32.36 Aligned_cols=130 Identities=8% Similarity=-0.010 Sum_probs=78.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHccccHHHHHHHHHHhhccCCCccch----hhHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV--AVLTACARAQLVELGLELFHSMLGKFEVVPIM----EHYG 207 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 207 (311)
.|..++.... .+.+ +.....+.+..........++. .+...+...|++++|...++..+.. +.|. .+--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444454443 3444 5555566666542121122222 2345678889999999999888743 2222 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSMPFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
.|.......|.+|+|+..++...-+ ........-...+...|+-++|..-|++.++..+++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3445667889999999998887311 122222333456888999999999999998876443
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.22 E-value=0.055 Score=38.37 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++... +.. ...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd-----~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYD-----LDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS------CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccC-----HHHHHHHHHhcc
Confidence 466677778888888888888876655678888889999998887788777766221 222 234667777888
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
.+++|.-++.+++....... .+...++++.|.+++.+ .+++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 88888888888853332222 12344566666633332 2234577777777766554
No 296
>PRK09687 putative lyase; Provisional
Probab=94.21 E-value=2.4 Score=34.05 Aligned_cols=245 Identities=11% Similarity=-0.083 Sum_probs=146.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc-chhHHHHHHHHh
Q 040965 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG-LYLGKQVHGYIL 93 (311)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~ 93 (311)
..+++.+..+|.......+.++...|.. ++...+..+... +|...-...+.+++.++..+. .+++...+..+.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 3444555667888888888888888854 444445555432 344333344444455542211 256777777664
Q ss_pred hccCCchHHHHHHHHHHHhhcCC-----HHHHHHHHHHc-ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 94 RNEIVLSVFMGTALIDLYGKVGC-----LERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
.. .++..+....+.++...+. ...+...+... ..++..+-...+.++.+.++ +++...+-.+.+. +|.
T Consensus 100 ~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~ 173 (280)
T PRK09687 100 LE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNG 173 (280)
T ss_pred hc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCH
Confidence 44 3445555555555554432 13344444333 44566777778888888887 4566776666653 344
Q ss_pred HHHHHHHHHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 040965 168 ITFVAVLTACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246 (311)
Q Consensus 168 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 246 (311)
..-...+.++.+.+ ..+.+...+..++. .++..+-...+.++.+.|+..-.-.+.+.+. .++ .....+.++.
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg 246 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHH
Confidence 55555555666543 24567777777764 3465667777888889988654444455554 233 3446677788
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
..|+. +|...+.++.+..|+. .+-...+.++.
T Consensus 247 ~ig~~-~a~p~L~~l~~~~~d~-~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYKFDDN-EIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhhCCCh-hHHHHHHHHHh
Confidence 88885 7888899988877754 35555555543
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.20 E-value=2.5 Score=34.23 Aligned_cols=155 Identities=10% Similarity=0.140 Sum_probs=89.5
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh---hhcCcchhHHHHHHHHhhccCC---chHHHHHHHHHHHhhcC
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL---VNEGGLYLGKQVHGYILRNEIV---LSVFMGTALIDLYGKVG 115 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g 115 (311)
+++.+.+++.+.+.| .+-+..+|.+..-..... ........+..+++.|.+..+- ++..++..++.. ..+
T Consensus 78 ~~~~~~~y~~L~~~g--Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG--FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhc--cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 356778999999988 888877776644332220 1112367889999999987532 344555555443 333
Q ss_pred CH----HHHHHHHHHccc-----c-hHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-Hcccc
Q 040965 116 CL----ERAIRVFKSMVI-----K-DVCTWNAMISSLASNSR--EKEALVMFDEMKEKGLRANEITFVAVLTAC-ARAQL 182 (311)
Q Consensus 116 ~~----~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~ 182 (311)
+. +.++.+|+.+.. . +....+.++...-...+ ..++.++++.+.+.|+++....|..+.-.. ...+.
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 33 445556655533 1 33333333333322222 458889999999999998877777665332 22222
Q ss_pred ---HHHHHHHHHHhhccCCCc
Q 040965 183 ---VELGLELFHSMLGKFEVV 200 (311)
Q Consensus 183 ---~~~a~~~~~~~~~~~~~~ 200 (311)
.+...++.+.+.+..+..
T Consensus 234 ~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 334444555555444433
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.19 E-value=3.6 Score=36.05 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--CcHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--ANEITFVAV 173 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l 173 (311)
++..+|...+..-...|+.+.+.-+|+...-| -...|--.+.-....|+.+-|..++....+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888889999999999999998665 3345555555555669999999888876654332 233333333
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCcchHHHHH----H-
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAK---EFMRSM-PFEPDASVLGALL----G- 243 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~----~- 243 (311)
+ +-..|+.+.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++... ...-+......+. +
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 34568999999999999875 3 5532 2223345566788888887 555554 2233333333332 2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2456789999999999999999999888998888877655
No 299
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.18 E-value=0.77 Score=33.58 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++|...|+++...+|.+. .|..-+... .+|.++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5677777777888888886 777666665 3577777777766543
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.16 E-value=0.06 Score=27.33 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~ 121 (311)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345677777777777777777775
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.11 E-value=1.6 Score=31.73 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--CCHHHHHHHHHhC
Q 040965 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--GLLSEAKEFMRSM 229 (311)
Q Consensus 152 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 229 (311)
.++++.+.+.+++|+...+..++..+.+.|+...-..++.. ++-+|.......+-.+... .-.+-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34555555666777777777777777777765544443322 3333332222222211111 1133444555555
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+ ..+..++..+...|++-+|.++.++....+.- ....++.+-.+.++...-..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 23444555666677777777766664332211 122344444444444444444444333
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.01 E-value=1 Score=38.28 Aligned_cols=124 Identities=9% Similarity=0.039 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++-.|.+-+...++++.-.|+....- .......|+++.+.+.+... .+-....+...+++...+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555544444444444323334332222 22334556666666666555 122344555556666666666666666
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
.-.-|+...-.++.........--..|-++++...|+++...+.+.+.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 666665544334333333333334445566666666666554444333
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.00 E-value=2.8 Score=37.91 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=90.7
Q ss_pred hhhhcCChHHHHHHHHH--hccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 4 GYVKNGDMDSAILLFEN--MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
++.-.|.++.|+..+-+ ....+.+.+...+..|.-.+-.+... ..+..... -.|....+..+|..|...-...+
T Consensus 267 ~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~-~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDP-GDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecC-CCCCCcCHHHHHHHHHHHHhccC
Confidence 44556778888877766 22224444333333222111111111 22222110 11112567777777776655667
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHH-HHHHhhcCCHHHHH-----------HHHHH------cccchHhh---HHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTAL-IDLYGKVGCLERAI-----------RVFKS------MVIKDVCT---WNAMIS 140 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~-----------~~~~~------~~~~~~~~---~~~l~~ 140 (311)
...|.+.+-.+....-+.....+... -......++++.-+ .++++ ...++... ......
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 78888887766654322222222222 22222222221111 11222 11111111 122233
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-HHHcccc-----------HHHHHHHHHHhhccCC----C-ccch
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLT-ACARAQL-----------VELGLELFHSMLGKFE----V-VPIM 203 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~~----~-~~~~ 203 (311)
-+-..|++++|+.+|.-..+.. .-....+.++. +...... ...|..+.+....... + ..+.
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 4456677777777776543210 00112222222 1222222 4455555555543211 1 1234
Q ss_pred hhHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 040965 204 EHYGCVVDL-----LGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 204 ~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p 233 (311)
.|+..|++. +...|++++|++.++++++-|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 555555543 457899999999999998777
No 304
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.90 E-value=1.5 Score=30.78 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 74 (311)
.++..+...+.......+++.+...+ . .+...++.++..++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~-~~~~~~~~li~ly~ 52 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--S-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--c-cchhHHHHHHHHHH
Confidence 34445555555555555555555443 1 33334444444443
No 305
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=2.4 Score=32.81 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...|..-..+|....++++|...+.+..+- ..-|..-|+.- +. ++.|.-+.+++.+. +--+..|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrslfhAA--------Ka--yEqaamLake~~kl--sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSLFHAA--------KA--YEQAAMLAKELSKL--SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccHHHHH--------HH--HHHHHHHHHHHHHh--HHHHHHHH
Confidence 346777778888899999999888887631 12222222211 12 66666666666553 22345666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCC--CcHHHHHHHHHHHHcc
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK---GLR--ANEITFVAVLTACARA 180 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~ 180 (311)
.....|...|..+.|-..+++.-+ .....++++|+.+|++.... +-. --...+..+-..+.+.
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 677788888888877777665521 13456667777777764322 100 0122344555567777
Q ss_pred ccHHHHHHHHHHhhcc---CCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhC---C---CCCCcchHHHHHHHHHhcCC
Q 040965 181 QLVELGLELFHSMLGK---FEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSM---P---FEPDASVLGALLGACKIHGA 250 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~g~ 250 (311)
.++++|-..+.+-... ....++. ..|...|-.|.-..++..|...++.- + -..+..+...|+.+| ..||
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 7777776666543211 0112221 33556666777788999999999883 2 123557778888877 6788
Q ss_pred hhHHHHHHH
Q 040965 251 VDLCHEVGR 259 (311)
Q Consensus 251 ~~~a~~~~~ 259 (311)
.+++..++.
T Consensus 243 ~E~~~kvl~ 251 (308)
T KOG1585|consen 243 IEEIKKVLS 251 (308)
T ss_pred HHHHHHHHc
Confidence 888877654
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.81 E-value=2.8 Score=33.37 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=104.6
Q ss_pred hHhhHHHHHHHHHc------CC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHH-------H
Q 040965 131 DVCTWNAMISSLAS------NS-----REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH-------S 192 (311)
Q Consensus 131 ~~~~~~~l~~~~~~------~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~ 192 (311)
...+|.+.++++.. +| -..+|.++|.-+.+..-+ ..+-..++.++....+..+|...+. +
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 34556666666541 12 146788888888765322 2344455666666666666655443 3
Q ss_pred hhcc------------------CCCccchhhHHHHHHHHHh-cCCHHHHHHHHHhC-C-CCC--------Cc-----chH
Q 040965 193 MLGK------------------FEVVPIMEHYGCVVDLLGR-AGLLSEAKEFMRSM-P-FEP--------DA-----SVL 238 (311)
Q Consensus 193 ~~~~------------------~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~-~~p--------~~-----~~~ 238 (311)
++.. .+..-|..-|...+....+ .-.++++.++.... | .-| |. .+|
T Consensus 199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly 278 (361)
T COG3947 199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence 3321 1223355556665544433 34577777776665 1 111 11 234
Q ss_pred HHH----HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 239 GAL----LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 239 ~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..+ ...|...|.+.+|.++.++++..+|-+...+..|+..+...|+--.|.+-++++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 333 3568899999999999999999999998899999999999999777777777664
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.69 E-value=0.15 Score=26.91 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++.|...|...|++++|..+++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444555555555544444
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.63 E-value=1.4 Score=32.91 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHH
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRAN-----EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVD 211 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 211 (311)
-..-+.+.|++++|..-|.+.+.. +++. ...|..-..++.+.+.++.|+.--.+.++ +.|+ ......-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHH
Confidence 355678899999999999998876 3332 23455555678888999999887777764 4453 122233345
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+|.+...+++|++-|+++ ...|..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 788888999999888888 445543
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.61 E-value=0.15 Score=25.26 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++.+.|++++|...|+++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.44 E-value=0.22 Score=24.63 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++..++.++.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 466788999999999999999999988643
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.23 E-value=1 Score=33.64 Aligned_cols=74 Identities=15% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHH
Q 040965 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
++|.+.|-++...+.--+......|...| ...+.+++..++..+++-. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56777777776665444555444554444 4677777777777766432 22456777788888888888777764
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=2.4 Score=30.92 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchh-hHHHHH--HHHHhcC
Q 040965 142 LASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME-HYGCVV--DLLGRAG 217 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g 217 (311)
+.+.+..++|+..|..+.+.|... ....-..........|+...|...|+++-.. ...|-.. -...|= -.+..+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 356688888888888888776442 1222223344567788888999999888755 2333221 111121 2345778
Q ss_pred CHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 218 LLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.++....-.+.+....+. ..-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888777212221 2234455566788999999999988875
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.05 E-value=0.17 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888999999999999999999876
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=2.3 Score=37.33 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3345667777777765543 3455677777777777777777777765432 3344445555666555444
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+-....+. |. -| .-..+|...|+++++.+++.+-+.-|
T Consensus 714 la~~~~~~-g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 714 LASLAKKQ-GK-NN-----LAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh-cc-cc-----hHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444433 22 11 12234556677777777776664333
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.99 E-value=3.7 Score=32.35 Aligned_cols=247 Identities=13% Similarity=0.155 Sum_probs=141.3
Q ss_pred hcCChHHHHHHHHHhccc-------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC---CCCCCCchHHHHHHHHHhhhh
Q 040965 7 KNGDMDSAILLFENMLKR-------DVVSWTSIINGFVRNGCFGEAICVFKNMMGN---VNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+..+.++|+.-|.++.+. .-.+...++....+.|++++....|.+++.- .....-+..+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788999999988432 3346778999999999999999999887531 100122345566666543322
Q ss_pred hhcCcchhHHHHHHHHhhc-cCCch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------------hHhhHH
Q 040965 77 VNEGGLYLGKQVHGYILRN-EIVLS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------------DVCTWN 136 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~ 136 (311)
. . .+.....++.-++. .-..| -.|-+.|...|...|.+.+..+++.++... -...|.
T Consensus 119 ~-~--m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 K-N--MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred h-h--hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 1 2 44444444433321 00111 123346788888899999888888887221 134677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHH-----HHccccHHHHHHHHHHhhccCCC--ccch---hh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTA-----CARAQLVELGLELFHSMLGKFEV--VPIM---EH 205 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~ 205 (311)
.-|+.|...++-.....+|++...- ...|.+.... +|+- ..+.|++++|..-|-++-+.+.- .|-. --
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 7788888888888888888875532 2234444333 3333 45678888876554444343222 2222 22
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 206 YGCVVDLLGRAGL--LSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 206 ~~~l~~~~~~~g~--~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|..|...+.+.|- ++. ++. +-.|.......++.+| ..+++.+-+++++.-..
T Consensus 275 YLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 275 YLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhc
Confidence 4445555555441 110 111 2234556667777777 44566666666555443
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.57 Score=35.88 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=44.2
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDL 253 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~ 253 (311)
|....+++.|+..|.+.+ -+.|+.. -|+.-+.++.+..+++.+.+--.+. .+.||..--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 445556666666666555 2355542 3344555566666666665444333 4555554333333 23455556666
Q ss_pred HHHHHHHHH
Q 040965 254 CHEVGRRLL 262 (311)
Q Consensus 254 a~~~~~~~~ 262 (311)
|...+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 666666664
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=8.2 Score=35.53 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCcchhHHHHHHHHhhccCCchHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (311)
.+-+..+.+...++-|+.+-+.- ..+..+...+...|+. +.+.|++++|...|-+.... ++|+ .++
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34556666777777777665442 3344444445544433 33477888888877666544 2332 244
Q ss_pred HHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
.-|....++..--..++.+.+. +...-+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..|.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 5556666666666666666443 44556678888888888888777766543 2211 1124456667777777777
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (311)
|..+-.+.. . +......+ +...+++++|.++++.+++
T Consensus 482 a~~LA~k~~----~--he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 482 AELLATKFK----K--HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHhc----c--CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 776654442 1 22233333 3467899999999999863
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=3.4 Score=33.32 Aligned_cols=47 Identities=6% Similarity=0.033 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++++++.++..=+.- |+-||..++..+++.+.+.+++.+|.++...|
T Consensus 115 ~pq~~i~~l~npIqY-GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQY-GIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchh-ccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344555554444332 55556556666666666666655555554443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=4.1 Score=35.94 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=52.6
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34556666655544321 445566666666677777777666666542 44555555555655533
Q ss_pred HHHHHhC---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 223 KEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 223 ~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
..+-... | + .|.-.-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 3332222 2 1 122223455677777777776653
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.42 E-value=4.4 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=26.5
Q ss_pred cCcchhHHHHHHHHhhccCCchHH---HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVF---MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
....++|+.-|++.++...+...+ ....++..+.+.|++++....+.++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 334666666666666543332222 2233455666666666666666655
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.33 E-value=1.3 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHHHHH---HHccccHHHHHHHHHHhhccCCCccch---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CcchHHH
Q 040965 168 ITFVAVLTA---CARAQLVELGLELFHSMLGKFEVVPIM---EHYGCVVDLLGRAGLLSEAKEFMRSMPFEP-DASVLGA 240 (311)
Q Consensus 168 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ 240 (311)
...+.|+.. -...++++++..+++.+. -+.|+. .++. .-.+...|++++|.++|++..-.+ ....-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 334444433 345889999999999987 455653 3343 345678999999999999994333 4343444
Q ss_pred HHHHHHh
Q 040965 241 LLGACKI 247 (311)
Q Consensus 241 l~~~~~~ 247 (311)
|+..|..
T Consensus 83 L~A~CL~ 89 (153)
T TIGR02561 83 LLALCLN 89 (153)
T ss_pred HHHHHHH
Confidence 4444433
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.17 E-value=0.38 Score=25.29 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998865
No 323
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=2.9 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=17.1
Q ss_pred HHHHHHhccchhHHHHHHHHHHH
Q 040965 274 VLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.++..+.+.|++.+|..++..+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 56777888888888887766554
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.51 E-value=0.46 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.+.-++.+.|++++|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999998743
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.21 E-value=1.2 Score=32.67 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch-----------hHHHHHHHHHHHHc
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER-----------WNRATDLRKAMVEA 298 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 298 (311)
-+++|..-|++++.++|+...++..++.+|...+. +++|...|++..+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 35667777888888999988899999988876543 55566666665554
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.18 E-value=5 Score=29.95 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=50.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHcc-cchHhhH-----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 107 LIDLYGKVGCLERAIRVFKSMV-IKDVCTW-----NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+...+...|++++|+..++... .+....+ ..|.......|.+++|+..++.....+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777776553 2222222 2234555667777777777766544322 122233334566777
Q ss_pred ccHHHHHHHHHHhhcc
Q 040965 181 QLVELGLELFHSMLGK 196 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~ 196 (311)
|+-++|..-|.+.+..
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 7777777777777655
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.12 E-value=9.6 Score=33.11 Aligned_cols=175 Identities=10% Similarity=0.067 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
.|.....+++..+.....+.-.+-+-.+|. ..+...|..++++|... ..++-..+++++.+..+ +......-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHH
Confidence 345555667777777777776666666663 33666777888888877 66777788888777643 33334444444
Q ss_pred HHccccHHHHHHHHHHhhccCCCcc------chhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVP------IMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACK 246 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 246 (311)
+...++.+.+..+|.++..+ +-| -...|..|+.. -..+.+....+..++ +...-...+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44558888888888887654 222 11244444432 134566666666655 32333344555556677
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...++++|.+++..+++.+..+..+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 7888888888888888877666655555555443
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.10 E-value=1.8 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHHHhcC----CCchhHHHHHHHHHhccchhHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQ----PKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
|....|.+++..++-+++++. ..++..+..|+..+.+.|+++.|
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333445555555555555422 11344555555555555555554
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.88 E-value=0.1 Score=37.03 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=63.1
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChh
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 252 (311)
++..+.+.+.++....+++.+... +...+....+.++..|++.++.++..++++... ......++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 566777788899999999999865 444567788999999999998899999888552 133345666777888888
Q ss_pred HHHHHHHHHH
Q 040965 253 LCHEVGRRLL 262 (311)
Q Consensus 253 ~a~~~~~~~~ 262 (311)
++.-++.++-
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888777654
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=1.5 Score=35.16 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=66.0
Q ss_pred cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-h-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHH
Q 040965 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-D-----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
|.+.+..+...++..-....+++.++..+-++... + ..+-.+.++.+ -.-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44444455555555555667778887777666322 1 11112233333 33567788888888788888889899
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
+..+++.+.+.+++.+|..+.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999888888888888887776654
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.71 E-value=1 Score=34.08 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNI 278 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~ 278 (311)
|.+..++.+.+.++.++|+...+.- +.+|.. ..-..++..++-.|++++|..-++-+-++.|... ..|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455677788889999999888765 556754 5556677889999999999999998888888743 356666655
No 332
>PRK10941 hypothetical protein; Provisional
Probab=90.64 E-value=1.7 Score=34.48 Aligned_cols=63 Identities=19% Similarity=0.063 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.+-.+|.+.++++.|..+.+.+..+.|+++.-+.--+..|.+.|.+..|..=++...++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 344456778888888888888888888888766666777788888888888877777766544
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.64 E-value=0.6 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=10.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+..++..+...|++++|...+++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444433
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.62 E-value=0.37 Score=22.58 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666666666666666554
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.06 E-value=1.6 Score=28.49 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHhcc-ccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH
Q 040965 10 DMDSAILLFENMLK-RDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86 (311)
Q Consensus 10 ~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~ 86 (311)
..++|..+-+.+.. ++..-..+|| ..+...|+|++|..+.+.. ..||...|..+-.. + .|..++..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~------~~pdlepw~ALce~--r---lGl~s~l~ 88 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL------CYPDLEPWLALCEW--R---LGLGSALE 88 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC------CCchHHHHHHHHHH--h---hccHHHHH
Confidence 45677777777633 2223333344 4567889999999888776 67898888877663 3 34477777
Q ss_pred HHHHHHhhccCCchHHHHH
Q 040965 87 QVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (311)
.-+..+...| .|....|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8888888888 44555443
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.71 E-value=4.1 Score=26.63 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356777776666655422 222223335567788899999998888888888888766543 56777777777777777
Q ss_pred cCCCCcHHHH
Q 040965 161 KGLRANEITF 170 (311)
Q Consensus 161 ~~~~~~~~~~ 170 (311)
.| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4444444
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.33 E-value=3.7 Score=26.63 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++.+-++.+... .+.|++....+-+.+|.+.+++..|.++|+..
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444332 44444444555555555555555555554433
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.19 E-value=1.3 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=13.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 138 MISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.04 E-value=15 Score=32.07 Aligned_cols=174 Identities=11% Similarity=0.113 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
|.....+++..+..+-+..-+..+..+|.. ..-+...|..++.++... .-+.-..+|+++.+..+. ++..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~----~~e~kmal~el~q~y~en----~n~~l~~lWer~ve~dfn-Dvv~~ 135 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE----YGESKMALLELLQCYKEN----GNEQLYSLWERLVEYDFN-DVVIG 135 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhc----CchhhHHHHHHHHHhcch-hHHHH
Confidence 444566778888888888888888899988 445677777788766543 367778888888877543 33333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc------h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK------D---VCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVL 174 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~ 174 (311)
..|...|-+ ++.+.+...|.++..+ + ...|.-+...- ..+.+....+...+... |...-...+.-+-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 445555555 8888888888887333 1 12555554322 35667777776666543 3334456677777
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
.-|....++++|++++..+++. ...|...-..++.-
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 7788889999999999877754 22343344444443
No 340
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.98 E-value=7.2 Score=28.45 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHH
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAI 46 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~ 46 (311)
++...|..+++.+.+.|++....
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555566665555554443
No 341
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.88 E-value=2.2 Score=27.48 Aligned_cols=51 Identities=18% Similarity=0.010 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--chhHHHHHHHHHhccch
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSNIHAGLER 284 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 284 (311)
|...-..+...+...|+++.|++.+-++++.+++ +...-..|+..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344455556667777777777777776665543 23455566666655554
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.63 E-value=0.76 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46777788888888888888777543
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.28 E-value=5.4 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+..+-++.+... .+.|++.+..+.+.+|.+.+++..|.++|+.+
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 28 ELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444455555443 66677777777777777777777777777666
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.26 E-value=4.3 Score=30.90 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CCcchHHHHHH
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE----PDASVLGALLG 243 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~~~~~~~l~~ 243 (311)
|...-+..+.+.+.+.+|+...+.-.+. -+.+..+-..+++.||-.|++++|..-++-. ... +....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566788899999999998887754 2335556678899999999999998777665 333 34466666665
Q ss_pred H
Q 040965 244 A 244 (311)
Q Consensus 244 ~ 244 (311)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.21 E-value=20 Score=32.62 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred CchHHHHHHHHHhhhhhhcCcchhHHHHHHHHh-hccCCch--HHHHHHHHHHHh-hcCCHHHHHHHHHHccc----ch-
Q 040965 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLS--VFMGTALIDLYG-KVGCLERAIRVFKSMVI----KD- 131 (311)
Q Consensus 61 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~- 131 (311)
.+...|..+|. -|++.++.+. +..++|. ..++..+...+. ...+++.|+..+++... ++
T Consensus 28 ~~l~~Y~kLI~------------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~ 95 (608)
T PF10345_consen 28 EQLKQYYKLIA------------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL 95 (608)
T ss_pred hhHHHHHHHHH------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 35556666654 3344555555 3334443 345555666665 67889999999887621 11
Q ss_pred ----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHHHHH-HHHHHccccHHHHHHHHHHhhccCC--Cc
Q 040965 132 ----VCTWNAMISSLASNSREKEALVMFDEMKEK----GLRANEITFVAV-LTACARAQLVELGLELFHSMLGKFE--VV 200 (311)
Q Consensus 132 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 200 (311)
-.....++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+..... ..
T Consensus 96 ~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 96 TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 122345667777766666 88888886653 222333444444 3333334789999999988775432 23
Q ss_pred cchhhHHHHHHHHH--hcCCHHHHHHHHHhC-----CC-------CCCcchHHHHHHH--HHhcCChhHHHHHHHHHH
Q 040965 201 PIMEHYGCVVDLLG--RAGLLSEAKEFMRSM-----PF-------EPDASVLGALLGA--CKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 201 ~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~-------~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 262 (311)
|...++-.++.+.. +.+..+++.+.++++ +. .|-..+|..++.. +...|+++.+...++++.
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444433 456566666666554 11 2234555666654 456778777777766665
No 346
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.14 E-value=2 Score=26.65 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=35.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCchh---HHHHHHHHHhccchhHHHHHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCG---RYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
...+.++|+..|+++++..++.+. ++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999886665444 4456778888999998887764
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.96 E-value=23 Score=33.05 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=95.0
Q ss_pred HhhcCCHHHHHHHHHHc----ccch-------HhhHHHHH-HHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 040965 111 YGKVGCLERAIRVFKSM----VIKD-------VCTWNAMI-SSLASNSREKEALVMFDEMKEK----GLRANEITFVAVL 174 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~----~~~~-------~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~ 174 (311)
.....++.+|..++.++ ..|+ ...|+.+- ......|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34557788888877766 2221 12333332 2334568888888887776543 1122344556666
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccchh---hHHHHH--HHHHhcCCHHHHH--HHHHhC-----CCCC----CcchH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPIME---HYGCVV--DLLGRAGLLSEAK--EFMRSM-----PFEP----DASVL 238 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~~~~A~--~~~~~~-----~~~p----~~~~~ 238 (311)
.+..-.|++++|..+.....+. .-.-+.. .|..+. ..+...|+...+. ..+... +-+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6677778888888777665432 1111222 222222 3344566333222 222222 1111 12233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----cCCCchh---HHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLE----LQPKHCG---RYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
..+..++.+ ++.+..-.....+ ..|.... .+..|+..+...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 334444333 3333333333322 2232211 223567777788888888888888876555443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.82 E-value=1.2 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.+|..+...+...|+++.|...|+..++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788888889999999999988876
No 349
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.80 E-value=1.7 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888777777766543
No 350
>PRK12798 chemotaxis protein; Reviewed
Probab=87.40 E-value=17 Score=30.81 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=114.1
Q ss_pred hcCCHHHHHHHHHHcccc----hHhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccccH
Q 040965 113 KVGCLERAIRVFKSMVIK----DVCTWNAMISS-LASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARAQLV 183 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~ 183 (311)
-.|+.++|.+.+..+... ....|-.|+.+ .....++.+|+++|+...-. .|.. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 358999999999888433 44556666654 45678899999999987643 4432 3344444556788999
Q ss_pred HHHHHHHHHhhccCCCccchhhH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRA---GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
+++..+-.....++...|-..-| ..+...+.+. -..+.-..++..|.-.--...|..+.+.-...|+.+.|...-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88887777666655444433222 3333333333 3445556666666422334678888888889999999999888
Q ss_pred HHHhcCCCch----hHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 260 RLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 260 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++..+...+. .....-..+-.-..+++++.+.+..+-...+
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 8887543221 1111112222334556677666665544433
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.37 E-value=13 Score=29.68 Aligned_cols=113 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHc--cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 040965 148 EKEALVMFDEMKE-KGLRANEITFVAVLTACAR--AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224 (311)
Q Consensus 148 ~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (311)
..+|+++|+...- ..+--|..+...++..... ......-.++.+-+...++-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 225 FMRSM----PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 225 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+++.- +...|...|..++......||..-...+..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 352
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.29 E-value=0.35 Score=38.98 Aligned_cols=118 Identities=12% Similarity=0.027 Sum_probs=71.6
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a 254 (311)
....|.++.|++.|...+.. -++....|..-.+.+.+.+....|++-+... .+.||. ..|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 44567788888887777653 2334455555666777777777777776666 555654 3333333445567788888
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...+..+.+++-+.. +=..|=...-+.+..++-...+++-++
T Consensus 202 a~dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888888777665532 333344444455555555555555444
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.02 E-value=11 Score=29.89 Aligned_cols=83 Identities=7% Similarity=-0.051 Sum_probs=49.5
Q ss_pred HHHHhhcCCHHHHHHHHHHc-ccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-----
Q 040965 108 IDLYGKVGCLERAIRVFKSM-VIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA----- 178 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----- 178 (311)
|.++...++|.++....-+- ..| .+.....-|-.|.+.+++..+.++-....+.--.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56777777777776654433 222 344445556667777777777777777665422223334666655544
Q ss_pred ccccHHHHHHHH
Q 040965 179 RAQLVELGLELF 190 (311)
Q Consensus 179 ~~~~~~~a~~~~ 190 (311)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777765
No 354
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.92 E-value=13 Score=28.88 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHc--CCCCcH---
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASN-SREKEALVMFDEMKEK--GLRANE--- 167 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~--~~~~~~--- 167 (311)
+|--..++|- .++.++|...++..+.- -...+-.+...|-.. .++++|+..|+..-+. |-..+.
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3433344443 34666666665544221 111122344455443 6677777777766432 111122
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
..+..+...-...+++.+|+.+|+++...
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444456788999999999998764
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.83 E-value=1.9 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
..++.++|+..|...+++..-.|+. .++..++.+|+.-|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665542222221 3445555666666666655544
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.71 E-value=7.9 Score=33.30 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=74.9
Q ss_pred HcCCCHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 143 ASNSREKEALV-MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 143 ~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
...|+.-.|-+ ++..+....-.|+....... .+...|+++.+...+....+. +.....+...++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 34566655554 34444443334554443333 356778888888888776542 33445567778888888889999
Q ss_pred HHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 222 AKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 222 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
|..+-+.| +.+ .+......-.......|-++++...|+++..++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88888777 211 122222222233456677888888888888776653
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.69 E-value=14 Score=29.30 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH-HHHHHHh
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV-VLSNIHA 280 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~ 280 (311)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++...... ..|.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTK---------------GYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHHHHHHH
Confidence 55667778888889999988887765442 22222222222222222 2333333333 3455567
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 777888888887777655
No 358
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=4.7 Score=31.31 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 215 RAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..|++-++++.-.++ ... .|+..|-.-..+.+..=+.++|..-|.++++++|.-
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 345555555554444 222 233444444444444445555555566665555543
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.40 E-value=8.7 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 252 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+.+.++|+.|.. .+...+..|...+..+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 388888888875 5566677888888888889999999888864
No 360
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.30 E-value=17 Score=29.76 Aligned_cols=58 Identities=3% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+.-+..+.|+..+|.+.|+.+.+...+..-......|+.++....-+.....++-+-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444556778888888888887765332222234456777777666565555554443
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.96 E-value=6 Score=27.14 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+..+.++.+...++.|+.......+.+|.+.+++..|.++|+-++.+.|... ..|-.+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k--~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQK--QVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHH--HHHHHHHH---------HHHHHHHHh
Confidence 4556677777778899999999999999999999999999999887643332 24555553 444555555
Q ss_pred CC
Q 040965 230 PF 231 (311)
Q Consensus 230 ~~ 231 (311)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.73 E-value=7 Score=34.50 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+-+-.++..|.. ...|-....|.-.--+...|+...|...+... ...|- ....-.|.....+.|-...|..++.+
T Consensus 590 e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 344444444432 34444334443333344567888887777666 33332 23344455666667777777787777
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.+.+....+-++..++++|.-..+.+.|++.|++..+...
T Consensus 668 ~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 668 ALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 7776665666777778888888888888888877766543
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.60 E-value=23 Score=30.74 Aligned_cols=246 Identities=10% Similarity=0.070 Sum_probs=140.0
Q ss_pred hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh---cCcchhHHHHHHHHhhcc-CCc-hHHHHHHHHHHHhhcCCH
Q 040965 43 GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN---EGGLYLGKQVHGYILRNE-IVL-SVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 117 (311)
+....+|++..+ .-|....|+..|..|..... ...+.....+++.....+ ..+ ....|..+.-+++....-
T Consensus 299 s~~~~v~ee~v~----~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 299 SRCCAVYEEAVK----TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 345577777766 45777777777777644321 113444455555544432 222 345666666666666543
Q ss_pred -HHHHHHHHHcccchHhhHHHHHHHHHcC-CCHHHH-HHHHHHHHHcCCCCcHHHHHHHH-HHHHccccHHHHHHHHHHh
Q 040965 118 -ERAIRVFKSMVIKDVCTWNAMISSLASN-SREKEA-LVMFDEMKEKGLRANEITFVAVL-TACARAQLVELGLELFHSM 193 (311)
Q Consensus 118 -~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 193 (311)
+-|..+..+....+...|..-++..... .+++-- .+++......-..+....|+... .........+.....+..+
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~ 454 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV 454 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 3344444456666777776666555532 232222 22233333332233334444444 1111111122222222222
Q ss_pred hccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCc
Q 040965 194 LGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGAC--KIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 194 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..|+..++ +.+++.+-+.|-..+|...+..+ .. +|+...|..++..- ...-+...+..+|+.+..-...+
T Consensus 455 -----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 455 -----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred -----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 24454444 56778888899999999999988 22 34667777777542 23345788889999988644367
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 269 CGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..|...+..-...|..+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 77888888877788998888887766544
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.19 E-value=28 Score=31.27 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=88.0
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhh-------ccCCchHHHHHHHHHHHhhc
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-------NEIVLSVFMGTALIDLYGKV 114 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 114 (311)
...|.+.++.....| .........++......+...+.+.|..+++.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887766 12222222222222224456679999999988877 45 223445677777764
Q ss_pred C-----CHHHHHHHHHHcccc-hHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--ccccH
Q 040965 115 G-----CLERAIRVFKSMVIK-DVCTWNAMISSLAS---NSREKEALVMFDEMKEKGLRANEITFVAVLTACA--RAQLV 183 (311)
Q Consensus 115 g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~~~~ 183 (311)
. +.+.|..++...... ++..-..+...+.. ..+...|.++|...-+.|.. ...-+..++.... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 3 667788888776332 33333334444433 24678999999999888743 2222222221111 33478
Q ss_pred HHHHHHHHHhhcc
Q 040965 184 ELGLELFHSMLGK 196 (311)
Q Consensus 184 ~~a~~~~~~~~~~ 196 (311)
+.|..++.+..++
T Consensus 381 ~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHc
Confidence 8999999888776
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.10 E-value=6.8 Score=30.02 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
....++....+.|+.++|.+.|.++...+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344556666677777777777777766543
No 366
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.91 E-value=5.3 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~ 71 (311)
..+.-++.+.|++++|.+..+.+++ +.|+......|-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE----IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH----HTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh----hCCCcHHHHHHHH
Confidence 3466678899999999999999998 7888877766654
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=17 Score=28.28 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=74.3
Q ss_pred hhhcCChHHHHHHHHHh--ccccHH-HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENM--LKRDVV-SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
|....+++.|+.-|.+. ..|+.. -|..-+.++.+..+++.+..--.+.++ +.||..--...+..+....+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~-- 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKG-- 93 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhcc--
Confidence 44556778888877776 455553 456677788888999988888888877 778888777777766544433
Q ss_pred chhHHHHHHHHhh----ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILR----NEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 82 ~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (311)
++.++..+.+... ..+++-......|..+--+.-...+...+.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888888877633 23333344555555544333344444444443
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.49 E-value=58 Score=34.36 Aligned_cols=64 Identities=5% Similarity=-0.080 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+|....+.....|.++.|...+-++.+..++ ..+...+......|+...|+.++++..+.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 56777777778899999999888888776644 47888889999999999999999998876543
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.23 E-value=24 Score=29.67 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----C----------------
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----P---------------- 230 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---------------- 230 (311)
......+...++++.-..++.+- +-.+.++-.+...+...|+.+.|.+++++. +
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~------PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKN------PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q ss_pred --------CCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHhcCCC-chhHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 040965 231 --------FEPDASVLGALL---GACKIHGAVDLCHEVGRRLLELQPK-HCGRYVVLSNIHA-GLERWNRATDLRKAMVE 297 (311)
Q Consensus 231 --------~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 297 (311)
..-|...|.++. ..+.+.|-+..|.++.+-+..++|. |+-.-...|+.|+ +.++++--.++.+....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.17 E-value=20 Score=28.80 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
++.....|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566777788888888777776653 446667777777777777755555554443
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.07 E-value=4.3 Score=35.73 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 254 (311)
..|+...|...+..+.. ..|- .+....|.....+-|-...|-.++.+. .+ ...+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 46888999999888763 3442 234555666777777777787777655 32 33446677778889999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHH
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++.|+++.+..|+.+.+-+.|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999987766655443
No 372
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.73 E-value=31 Score=30.62 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCcchHHHHHHH-
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-FEPDASVLGALLGA- 244 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~- 244 (311)
.+|..-+..-...|+.+.+.-.|++..-.+.. =...|-..+.-....|+.+-|..++... . ..|+......+-..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCAL--YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34444444455555555555555555432111 1112323333333335555555554444 1 11222222222112
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
.-..|+++.|..+++.+..--|.....-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 223556666666666666544544333333344445555555555
No 373
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.26 E-value=40 Score=31.59 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=110.3
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCCCCch-------HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCchHHH
Q 040965 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNE-------ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVLSVFM 103 (311)
Q Consensus 35 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 103 (311)
......++.+|..++.+....- ..|+. ..++.+- +-.... .|+++++.++-+..... -..+....
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l--~~~~~~~~~~l~ae~~aL~-a~val~-~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFL--KAPMHSRQGDLLAEFQALR-AQVALN-RGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHh--CcCcccchhhHHHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3456788888888888876543 22222 1233222 222333 77788888887766654 22344566
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc----hHhh---HHHHH--HHHHcCCC--HHHHHHHHHHHHHc-----CC-CCc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK----DVCT---WNAMI--SSLASNSR--EKEALVMFDEMKEK-----GL-RAN 166 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~m~~~-----~~-~~~ 166 (311)
+..+..+..-.|++++|..+..+..+. ++.. |..+. ..+..+|+ +.+.+..|...... .. .+-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 677778888889999998887766332 3322 22222 23445663 33333333333221 00 112
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhcc---CCCccchhhH--HHHHHHHHhcCCHHHHHHHHHhC-----CCCC--C
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGK---FEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSM-----PFEP--D 234 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-----~~~p--~ 234 (311)
..++..++.++.+ ++.+..-...-.+- ....|-...+ ..|+......|++++|...+.++ ...| +
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2334444444443 33332222221111 0112211122 25667777888888888887776 1111 2
Q ss_pred cchHHHHHHH--HHhcCChhHHHHHHHH
Q 040965 235 ASVLGALLGA--CKIHGAVDLCHEVGRR 260 (311)
Q Consensus 235 ~~~~~~l~~~--~~~~g~~~~a~~~~~~ 260 (311)
..+-...+.. ....|+.+.+.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 2456777777666655
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=82.99 E-value=11 Score=25.01 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..++|..+.+.+...+.. ...+--.-+..+...|++++|...=.....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 367777777777666532 22222334455667777777744444445566666655433 356777777777776655
Q ss_pred cC
Q 040965 161 KG 162 (311)
Q Consensus 161 ~~ 162 (311)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 375
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=39 Score=31.18 Aligned_cols=128 Identities=19% Similarity=0.136 Sum_probs=74.7
Q ss_pred hhhhhhcCChHHHHHHHHHhccc-----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC------------------
Q 040965 2 IDGYVKNGDMDSAILLFENMLKR-----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL------------------ 58 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 58 (311)
|+-+.+.+.+++|...-+..... -...+...|..+...|++++|-...-.|......
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45567888899999888776322 2346777888888888888887776666432100
Q ss_pred --C------CCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHh-----------h---ccCCchHHHHHHHHHHHhhcCC
Q 040965 59 --V------RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-----------R---NEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 59 --~------~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-----------~---~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
. +.+...|..++..+.... ...+-+..+.|...+ . .. .-+......|+..|...++
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~~~-~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLASD-VKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAHLYLYDNK 520 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHHHH-HHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHHHHHHccC
Confidence 1 123455666665544311 111222222211111 0 01 1122334558899999999
Q ss_pred HHHHHHHHHHcccch
Q 040965 117 LERAIRVFKSMVIKD 131 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~ 131 (311)
+..|...+-....++
T Consensus 521 Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 521 YEKALPIYLKLQDKD 535 (846)
T ss_pred hHHHHHHHHhccChH
Confidence 999999998876554
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.75 E-value=15 Score=26.13 Aligned_cols=78 Identities=12% Similarity=0.285 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcc---------cchHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCcHHHHHH
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMV---------IKDVCTWNAMISSLASNSR-EKEALVMFDEMKEKGLRANEITFVA 172 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 172 (311)
..|.++.-....+++.....+++.+. ..+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555555566666666666666551 1244566666666655444 3445566666666666667777777
Q ss_pred HHHHHHcc
Q 040965 173 VLTACARA 180 (311)
Q Consensus 173 l~~~~~~~ 180 (311)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77666554
No 377
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.64 E-value=20 Score=27.55 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC-chHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMG 104 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 104 (311)
+.+||-+.--+...|+++.|.+.|+...+- .|. ..|..+=++..-.- .|++..|.+-+.+.-+.+.. |-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~-y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPT-YNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCc-chHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 567888888888888888888888888773 332 22333322222222 56677777766666554322 222233
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-------HHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRV-FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN-------EITFVAVLTA 176 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~ 176 (311)
.-+.. ..-+..+|..- .++....|..-|..-|-.|.- |+.. ...+++++... -.-+ ..||-.+..-
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Confidence 22221 22344555443 333444454444433322221 1111 12233333322 1111 3467777777
Q ss_pred HHccccHHHHHHHHHHhhcc
Q 040965 177 CARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~ 196 (311)
+...|+.++|..+|+-.+..
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 88888888888888877654
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.42 E-value=1.6 Score=37.06 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 249 (311)
-+..+...+.++.|..++.++++ ..||...| ..-..++.+.+++..|..=+.++ ...|.. ..|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556778899999999999984 57765544 33347888899999888766655 545543 33433445667778
Q ss_pred ChhHHHHHHHHHHhcCCCchh
Q 040965 250 AVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~ 270 (311)
.+.+|...|+......|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888899999988889999873
No 379
>PRK09687 putative lyase; Provisional
Probab=82.19 E-value=25 Score=28.35 Aligned_cols=219 Identities=9% Similarity=-0.032 Sum_probs=131.0
Q ss_pred CchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH----HHHHHHHHHc--ccchHhh
Q 040965 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL----ERAIRVFKSM--VIKDVCT 134 (311)
Q Consensus 61 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~~~ 134 (311)
+|.......+.++...+ -+.+...+..+.+. ++...-...+.++...|+. .++...+..+ ..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~----~~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG----GQDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcC----cchHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 45444444444433332 34444445444432 3555556667777777763 5677878766 4566666
Q ss_pred HHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 135 WNAMISSLASNSR-----EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 135 ~~~l~~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.+...+-.+++. ++...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHH
Confidence 6666666655432 1234444444333 3366666677778888776 4677777777653 333444555
Q ss_pred HHHHHhcC-CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH
Q 040965 210 VDLLGRAG-LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 210 ~~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
+.++.+.+ +.+.+...+..+-..+|..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|.. +|
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hH
Confidence 55555543 2446666666663367777777778888888874 5555555554432 2 345778888888885 68
Q ss_pred HHHHHHHHHccC
Q 040965 289 TDLRKAMVEAGI 300 (311)
Q Consensus 289 ~~~~~~m~~~~~ 300 (311)
...+.++.+...
T Consensus 254 ~p~L~~l~~~~~ 265 (280)
T PRK09687 254 LPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHHhhCC
Confidence 888888887544
No 380
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.16 E-value=41 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHH
Q 040965 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF 49 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 49 (311)
-|++++|+++|-++..+|.. |..+.+.|++-.+.+++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHH
Confidence 47888888888777655432 33334444444444443
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.61 E-value=5.1 Score=30.06 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=11.8
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
|++.+|..++.++...|+.++|.+..+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.21 E-value=33 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHH--ccccHHHHHHHHHHhhc
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEI--TFVAVLTACA--RAQLVELGLELFHSMLG 195 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 195 (311)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666554 333332 2333333332 23345555555555543
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.12 E-value=27 Score=28.12 Aligned_cols=83 Identities=10% Similarity=-0.066 Sum_probs=37.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 149 (311)
.+.+..+...+......+.. .....+...|.. ..+..+|..+|...... +......|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 44455666666555543311 122222333222 23455566666544333 23333334444443 33556
Q ss_pred HHHHHHHHHHHcCCC
Q 040965 150 EALVMFDEMKEKGLR 164 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~ 164 (311)
+|..+|++..+.|..
T Consensus 131 ~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 131 KALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHcCCh
Confidence 666666666555543
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=81.07 E-value=6.9 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 10 DMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 10 ~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.++....+++.+ ...|-.-.-.+|.++...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555566555 233555666788899999999999998888754
No 385
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.23 E-value=26 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
+|.-...|++.....++..+. .+++++|.+.+.++-+.|..|.
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 333345566666666666554 4788888888888888887764
No 386
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.94 E-value=48 Score=30.27 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=32.0
Q ss_pred hhhhhhcCChHHHHHHHHHhc---cccHHHHHHHHHHHHhcCCH-------hHHHHHHHHhhcC
Q 040965 2 IDGYVKNGDMDSAILLFENML---KRDVVSWTSIINGFVRNGCF-------GEAICVFKNMMGN 55 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~ 55 (311)
|-.|.|.|++++|.++..... ......+-..+..|....+- ++...-|++..+.
T Consensus 118 Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 118 IYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 556889999999999994442 22334556666666554222 3555566665543
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.83 E-value=7.6 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
...|+...|..++..+...|+.++|.+..+++...-|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999999998884
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.04 E-value=12 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=10.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 040965 137 AMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555444443
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.94 E-value=18 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666677777766666655
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.77 E-value=8.1 Score=24.97 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=32.5
Q ss_pred HHhcCChhHHHHHHHHHHhcC-----CC----chhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQ-----PK----HCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~-----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..+.|++..|.+.+.+..+.. +. -..+...++......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777777776666665421 11 011233456667777888888888887764
No 391
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=32 Score=26.98 Aligned_cols=88 Identities=13% Similarity=-0.033 Sum_probs=50.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHc----------ccc-----------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 107 LIDLYGKVGCLERAIRVFKSM----------VIK-----------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
-.+-+.+.|++.+|...|.++ .+| ....+...-+++...|++-++++.-.+..... +-
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~ 262 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PG 262 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cc
Confidence 345566777777777777665 122 11223333445555666666666666666552 33
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
++..|..-..+....-+.++|..=|..+++
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 555666556666666666666666666663
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.47 E-value=16 Score=23.53 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHhC----C--CCCC---c--chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 214 GRAGLLSEAKEFMRSM----P--FEPD---A--SVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~----~--~~p~---~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
.+.|++.+|.+.+.+. . ..+. . .....+.......|++++|...++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777776555444 1 1111 1 11222334466778888888888888763
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.33 E-value=45 Score=28.48 Aligned_cols=56 Identities=9% Similarity=-0.102 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC---------C-CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSMPF---------E-PDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
..|++.++-.|++..|+++++.+.+ . -.+.++..+.-+|...+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888877721 1 134556666677778888888888887766
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.13 E-value=59 Score=29.71 Aligned_cols=123 Identities=12% Similarity=0.092 Sum_probs=68.1
Q ss_pred hhhhhcCChHHHHHHHHHhccc------cH--HHHHHH-HHHHHhcCCHhHHHHHHHHhhcCCC-CCCCchHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLKR------DV--VSWTSI-INGFVRNGCFGEAICVFKNMMGNVN-LVRPNEATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~------~~--~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~p~~~~~~~ll~~ 72 (311)
..+.+.+... |....++.+.. +. ..|.-+ +..+...+++..|.+.++....... ...|-...+..++.+
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA 186 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 3445555444 77777766322 11 122222 2233334799999999988765321 023444555556665
Q ss_pred hhhhhhcCcchhHHHHHHHHhhcc---------CCchHHHHHHHHHHH--hhcCCHHHHHHHHHHc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNE---------IVLSVFMGTALIDLY--GKVGCLERAIRVFKSM 127 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 127 (311)
...+. .+..+.+.+..+.+.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 187 ~l~l~-~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 187 LLHLR-RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHhc-CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55544 555666777766663322 134566776666544 4567777777666555
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.90 E-value=33 Score=26.78 Aligned_cols=60 Identities=5% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhh
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR 94 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 94 (311)
.++..+-+.|+++++.+.+.++...+ ...+..--+.+..+|...-.. ...+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~--~eLt~eERnLlsvayKn~i~~--~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMN--PELTEEERNLLSVAYKNVIGS--RRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTS--S---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcccc--chHHHHhhhhHhh
Confidence 46777788999999999999999876 566666666666555443323 4555555555544
No 396
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.61 E-value=64 Score=29.90 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
.-..|+..|...++++.|..++-.++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhcc
Confidence 34457778888888888888877654
No 397
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=42 Score=27.69 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHc-------ccchHhhH--HHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCcHHH-H
Q 040965 106 ALIDLYGKVGCLERAIRVFKSM-------VIKDVCTW--NAMISSLASNSREKEALVMFDEMKE-----KGLRANEIT-F 170 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~-~ 170 (311)
.++...-+.++.++|++.++++ .+|+...| ..++..+...||..++.+.+++..+ .+++|+.++ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667888888888877 33445444 3456677788999999999988877 577776543 3
Q ss_pred HHHHH-HHHccccHHH
Q 040965 171 VAVLT-ACARAQLVEL 185 (311)
Q Consensus 171 ~~l~~-~~~~~~~~~~ 185 (311)
..+-. .|...|++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 33333 2444455443
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.43 E-value=16 Score=25.62 Aligned_cols=71 Identities=14% Similarity=-0.012 Sum_probs=44.5
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHhC-C-CCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 200 VPIMEHYGCVVDLLGRAG---LLSEAKEFMRSM-P-FEPDA--SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
.++..+--.+..++.+.. +..+.+.+++++ + -.|+. .....|.-++.+.++++.+.++++.+++..|++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 445445555556666544 455566777776 2 23332 23334455677888888888888888888888764
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.35 E-value=17 Score=24.24 Aligned_cols=85 Identities=7% Similarity=0.020 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHhccc-cHHHHHHH--HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 9 GDMDSAILLFENMLKR-DVVSWTSI--INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
...++|..+.+.+... +..-..+| +..+...|+|++|+ ..-... ..||...|..|-.. + .|-.+++
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL--l~~~~~----~~pdL~p~~AL~a~--k---lGL~~~~ 88 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL--LLPQCH----CYPDLEPWAALCAW--K---LGLASAL 88 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH--HHHTTS------GGGHHHHHHHHH--H---CT-HHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH--HhcccC----CCccHHHHHHHHHH--h---hccHHHH
Confidence 4568888888887433 32333334 45578899999992 222211 67999988877763 3 4558889
Q ss_pred HHHHHHHhhccCCchHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+.++..+| .|....|.
T Consensus 89 e~~l~rla~~g-~~~~q~Fa 107 (116)
T PF09477_consen 89 ESRLTRLASSG-SPELQAFA 107 (116)
T ss_dssp HHHHHHHCT-S-SHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 99999888888 44544443
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.91 E-value=21 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
.+-|++.....-+++|.+.+|+..|.++|+-+...-++....|-.++
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45566666666667777777777777777666654444333444443
No 401
>PRK10941 hypothetical protein; Provisional
Probab=75.71 E-value=39 Score=27.01 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++++.-.|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 344445555566666666655555431 113333333334455555555555555555554344444444433333
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.41 E-value=18 Score=23.01 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
+.+++..+.+.|+- +..-...+-..-...|+.+.|.+++..+. +.+..|..+++++...|+-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34555666665532 22222222222224467777777777777 66677777777777666655443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.66 E-value=25 Score=29.90 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHh
Q 040965 169 TFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
++-.+.-+|...+++.+|.+.|...
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555443
No 404
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=20 Score=29.36 Aligned_cols=97 Identities=9% Similarity=-0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLG 243 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~ 243 (311)
..|.-=.+-|.+..++..|...|.+-++..--.|+ .+.|+.-..+-.-.|++..|+.=.... .++|+. ..|..-..
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 44555566677777888888888776655333343 455666565656667777776665555 455543 44444445
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 040965 244 ACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~ 264 (311)
++....++..|..+.++....
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 566667777777777766544
No 405
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.27 E-value=55 Score=30.33 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred hhHHHHHHHHhhccCCch---HHHHHHHHHHHhhcCCHHHHHHHHHHccc-chH----------hhHHHHHHHHHcCCCH
Q 040965 83 YLGKQVHGYILRNEIVLS---VFMGTALIDLYGKVGCLERAIRVFKSMVI-KDV----------CTWNAMISSLASNSRE 148 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~ 148 (311)
++-...+.+|.++=-.|+ ..+...++-.|....+++..+++.+.+.. ||. ..|...++---+-||-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 334445555555432332 34445566667777777777777766622 211 1222233333455777
Q ss_pred HHHHHHHHHHHHc--CCCCcHH-----HHHHHH--HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-C
Q 040965 149 KEALVMFDEMKEK--GLRANEI-----TFVAVL--TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG-L 218 (311)
Q Consensus 149 ~~a~~~~~~m~~~--~~~~~~~-----~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 218 (311)
++|+...-.|.+. .+.||.. .|.-+. ..|...+..+.|...|++.- .+.|+..+--.+...+...| +
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 7777776666543 2455543 343322 23555666777777777765 34554332222222222222 2
Q ss_pred HHHHHHH------HHhC-CCCCCc---chH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 219 LSEAKEF------MRSM-PFEPDA---SVL---GALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 219 ~~~A~~~------~~~~-~~~p~~---~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
++...++ +..+ |.+-.. ..| ...+.+-.-.+++.+|.+.-+.|.++.|+.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2222221 1111 111111 111 122344456778888888888888888775
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.65 E-value=7.4 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=30.8
Q ss_pred cHH-HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHH
Q 040965 25 DVV-SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY 66 (311)
Q Consensus 25 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~ 66 (311)
|.. -|+..|....+.||+++|++++++.++.| ..--..+|
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG--~~~Ar~tF 295 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLG--STSARSTF 295 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CchHHHHH
Confidence 444 46799999999999999999999999887 44433443
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.12 E-value=9.9 Score=30.59 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 173 (311)
.-|+..|..-.+.||+++|+.++++.++.|+.--..+|...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34568888888899999999999999888876555555443
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.02 E-value=78 Score=29.17 Aligned_cols=122 Identities=2% Similarity=-0.043 Sum_probs=69.5
Q ss_pred HhhhhhhcCcchhHHHHHHHHhhcc-CCch--HHHHHHHHHHHhhcCCHHHHHHHHHHcccc--hHhhHHHHHHHHHcCC
Q 040965 72 SCAGLVNEGGLYLGKQVHGYILRNE-IVLS--VFMGTALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNS 146 (311)
Q Consensus 72 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~ 146 (311)
++.++. ..+.+.|...+....... ..+. ..++..+.......+...+|...+.....+ +.....--+..-...+
T Consensus 248 ~l~Rla-r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVA-RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHH-HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 334444 444677888887764432 2222 223334433333333255666666665333 4444444455555788
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
+++.+...+..|.... .-...-.--+..++...|+.++|..+|+.+..
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888888875432 22334444556666678888888888887653
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.64 E-value=25 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 244 (311)
+..|.+.|.+++|.+++++.--.|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 34566777777777777766225555444443333
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.54 E-value=48 Score=26.58 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=63.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh--
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR-- 215 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 215 (311)
=|++++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-+...+ .-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHH
Confidence 3788999999999988776654331112234444455568999999999988888776522 2233348888877765
Q ss_pred ---cCCHHHHHHHHHhC
Q 040965 216 ---AGLLSEAKEFMRSM 229 (311)
Q Consensus 216 ---~g~~~~A~~~~~~~ 229 (311)
.|.+++|+++...-
T Consensus 168 LlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVGS 184 (309)
T ss_pred HhccccHHHHHHHHhcC
Confidence 59999999998433
No 411
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=71.38 E-value=10 Score=29.28 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
..+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.|++..+++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566777777777776 4333 4456666666666777777777777777777777643
No 412
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=71.30 E-value=12 Score=30.27 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 215 RAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
+.|+.++|..+|+.. ...|+. ....-+....-..+++-+|-++|-+++...|.+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 567777777777765 444433 2333333333345667777777777777777765443
No 413
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=71.19 E-value=31 Score=23.82 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 252 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
+...++|+.|.. ++......|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446777888775 445556678888888889999999998885
No 414
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.12 E-value=29 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 219 LSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 219 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
.+.|.++.+-|| ...............|++.-|.++.+.++..+|++..+-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456677777774 11223334455678999999999999999999999888888888887776543
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.35 E-value=20 Score=28.19 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKN 51 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~ 51 (311)
++++|...|+...|++-|+.
T Consensus 16 i~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 45777888888888776654
No 416
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.22 E-value=49 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444445555555555554
No 417
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.62 E-value=28 Score=31.35 Aligned_cols=86 Identities=12% Similarity=-0.032 Sum_probs=64.2
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-Cc------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEP-DA------SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p-~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
..+..++..+.+.|..- ..-| |. .....+.-+|....+.|.|.++++++.+.+|.++-+-..+..+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 44677888888887654 2222 21 3345566667888899999999999999999987777777778888889
Q ss_pred hHHHHHHHHHHHHc
Q 040965 285 WNRATDLRKAMVEA 298 (311)
Q Consensus 285 ~~~A~~~~~~m~~~ 298 (311)
-++|..+.......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888776643
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.41 E-value=17 Score=20.05 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=22.9
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345667777777777777777777776666554
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.33 E-value=4.4 Score=28.09 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
..|.-..|..+|++|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 44666778888999999988886 45566554
No 420
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.90 E-value=1.1e+02 Score=29.23 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=92.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHccccH--HHHHHHHHHhhccCCCccchhhHH-
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAVLTACARAQLV--ELGLELFHSMLGKFEVVPIMEHYG- 207 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 207 (311)
-|..|+..|...|+.++|++++.+..+.. ..--...+..++..+.+.+.. +..+++-+-.++. ...-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 47889999999999999999999987632 111123344466655555554 5555555555433 1100011111
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHhCC---CCCCcchHHHHHHHHHhc--------CChhHHHHH--HHHHH-
Q 040965 208 -----------CVVDLLGRAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIH--------GAVDLCHEV--GRRLL- 262 (311)
Q Consensus 208 -----------~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~--------g~~~~a~~~--~~~~~- 262 (311)
.-+-.|......+-+..+++.+. ..++....+.++..|.+. ++-+++.+. -+++.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 12334667778888888888882 234555566666665431 122233333 22221
Q ss_pred --h----cCCC-------chhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 263 --E----LQPK-------HCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 263 --~----~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+ ..|. ....|....-.+.+.|+.++|..++-....
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 1111 123565666667799999999998776554
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.57 E-value=46 Score=24.70 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
...+.-.+.++..... ....+..++..-.+...+..+..++++.. .....-.-+.-+.+.|+++.+...
T Consensus 40 ~~~~~L~~~l~~~~~~----~~~~~~pll~~~~k~~~l~~~l~~l~r~~-------flF~LP~~L~~~i~~~dy~~~i~d 108 (182)
T PF15469_consen 40 SGTEKLEESLNEASSK----ANSVFKPLLERREKADKLRNALEFLQRNR-------FLFNLPSNLRECIKKGDYDQAIND 108 (182)
T ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHccHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHcCcHHHHHHH
Q ss_pred HHhCCCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 226 MRSMPFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 226 ~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
|.++. ..+.... ..-.-..-+.++..+.+.+.+. .|..|...- ...++..+++..+.+.++..+|
T Consensus 109 Y~kak-----~l~~~~~~~~~vf~~v~~eve~ii~~~r~~------l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dP 174 (182)
T PF15469_consen 109 YKKAK-----SLFEKYKQQVPVFQKVWSEVEKIIEEFREK------LWEKLLSPP---SSQEEFLKLIRKLLELNVEEDP 174 (182)
T ss_pred HHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCH
Q ss_pred cccccc
Q 040965 305 AYSLIE 310 (311)
Q Consensus 305 ~~~~~~ 310 (311)
.+.|+.
T Consensus 175 i~~~l~ 180 (182)
T PF15469_consen 175 IWYWLE 180 (182)
T ss_pred HHHHHH
No 422
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.26 E-value=84 Score=27.61 Aligned_cols=101 Identities=13% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCcHHHH-HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH---HHhcCCHHHHHHHHHhC--CCCCCcch
Q 040965 164 RANEITF-VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL---LGRAGLLSEAKEFMRSM--PFEPDASV 237 (311)
Q Consensus 164 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~--~~~p~~~~ 237 (311)
.|+..|+ +.++..+.+.|-...|...+..+... .+|+...|..+|.. ...+| ..-+.++|+.+ .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 3444333 55666677777778888888777653 34555666666643 22333 66667777776 22256666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLE-LQPK 267 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~ 267 (311)
|.-.+.--...|..+.+-.++.++.+ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 66555555577777777777776664 4443
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.12 E-value=37 Score=23.46 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=31.5
Q ss_pred chhHHHHHHHHhhccCCch-HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (311)
.+.+.++|..|...|+-.. ...|..-...+...|++++|.++|+.
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4577888888887765543 45666667777778888888887764
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.03 E-value=25 Score=23.51 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|..|+..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555543
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.81 E-value=69 Score=26.45 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=12.6
Q ss_pred HHhccchhHHHHHHHHHHHHccC
Q 040965 278 IHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.+..+|..+.|..+++-+.+.++
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHc
Confidence 34455555555555555555554
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.42 E-value=59 Score=25.58 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=14.2
Q ss_pred hhhhhhcCChHHHHHHHHHh
Q 040965 2 IDGYVKNGDMDSAILLFENM 21 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~ 21 (311)
+..|.-.|+...|++-|+.=
T Consensus 17 ~rl~l~~~~~~~Av~q~~~H 36 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRAH 36 (247)
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 45667778888888777643
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.07 E-value=32 Score=21.96 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (311)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. + .|+ .|...++++...|+-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q---KEG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCc--HHHHHHHHHHHcCchhhhhc
Confidence 34556666666533 33333333333335577777777777775 3 233 46667777777766555543
No 428
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.95 E-value=16 Score=31.37 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=78.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHh
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITF-VAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGR 215 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 215 (311)
-+..+...++++.|..++.+..+. .|+-..| ..=..++.+.+++..|+.=+.++++. .|+ ...|..-..++.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHh
Confidence 345667889999999999999886 6655444 44447889999999999888888764 354 3455555567777
Q ss_pred cCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHh
Q 040965 216 AGLLSEAKEFMRSM-PFEPDASVLGALLGACKI 247 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 247 (311)
.+++.+|...|+.. .+.|+..-....+.-|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 78889999888888 778988888777766533
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.66 E-value=74 Score=27.21 Aligned_cols=194 Identities=8% Similarity=-0.055 Sum_probs=95.7
Q ss_pred HHHHHHhhcCCCCCCCchHH--HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH--HHHHHHHHHhhcCCHHHHH
Q 040965 46 ICVFKNMMGNVNLVRPNEAT--YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF--MGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 46 ~~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 121 (311)
.++++.+.+.| ..|+... ..+.+..++. .|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+.
T Consensus 15 ~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~---~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 15 LDIARRLLDIG--INPNFEIYDGISPIKLAMK---FRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHHHHHHHHCC--CCCCccCCCCCCHHHHHHH---cCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 67788888888 7777643 2333333332 33333 444555555544422 1123456667788888877
Q ss_pred HHHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 122 RVFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT--FVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 122 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
.+++.-... +....+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+++.
T Consensus 86 ~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~--- 157 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH--- 157 (413)
T ss_pred HHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---
Confidence 777654221 1112222 3333445665 44555556666654321 12233444566777665554432
Q ss_pred cCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcch---HHHHHHHHHhcCChhHHHHHHHH
Q 040965 196 KFEVVP---IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV---LGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 196 ~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
|..+ +..-.+.|. ..+..|+.+-+.-+++. |..|+... ...++......|+.+-+.-+++.
T Consensus 158 --g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 158 --KACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred --CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 3332 222233333 33456776655554443 33443321 22444444566777655555543
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=76 Score=26.16 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=71.2
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc---CCCccchhhH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACARAQLVELGLELFHSMLGK---FEVVPIMEHY 206 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 206 (311)
|...++.|..+ ...+.++-.+..+...+. |-.--...+......|++-|+.+.|.+.+++..++ .|.+.|+..+
T Consensus 69 D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 69 DQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred cHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 44444444432 122333444444444433 21222345666777899999999999888775543 1556676544
Q ss_pred HHHHH-HHH----hcCCHHHHHHHHHhCC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 207 GCVVD-LLG----RAGLLSEAKEFMRSMP---FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 207 ~~l~~-~~~----~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
..-+. .|. -....++|..++++-| .+.-..+|..+- |....++.+|-.+|-+...
T Consensus 147 ~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 147 KIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 43222 222 2345677777777774 122234555443 3455688888888777664
No 431
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.64 E-value=1.4e+02 Score=29.05 Aligned_cols=124 Identities=6% Similarity=-0.052 Sum_probs=65.3
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccC---CCccch--------hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc--chH
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKF---EVVPIM--------EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA--SVL 238 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~ 238 (311)
......+..|.++-+.+..+.+.+.. ...-+. ..|-.=+.++.....++++.+.+.... |.. ..+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 770 (932)
T PRK13184 693 DIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLILYAF 770 (932)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHHHHH
Confidence 33344567788887777666655321 111111 112222445555556777776555543 322 333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..++.-+...++.+....+.+.+..-.+.. ......-+.+|.-..+|++|.+++.....
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 771 DLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 444444455566666666666655433221 11333556677777888888888865443
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.61 E-value=5.9 Score=27.50 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
.....|.-.+|-.+|++|++. |.+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~-G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLER-GNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhC-CCCCc--cHHHHHHHh
Confidence 345567788899999999998 88998 588887653
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.42 E-value=40 Score=24.01 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
++..+...+++-.|.++++++.+.+...+..|....+..+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 333444444444455555555444433333333333333333
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.97 E-value=1.3e+02 Score=28.73 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999999865
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.76 E-value=89 Score=26.64 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred hhhhhcCChHHHHHHHHHh------ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC---CCCCCchHHHHHHHHHh
Q 040965 3 DGYVKNGDMDSAILLFENM------LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV---NLVRPNEATYVSVLSSC 73 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~p~~~~~~~ll~~~ 73 (311)
+.|...|+++.|.+.|.+. .+.-...|-.+|..-.-.|+|.....+..+..+.. ....+-..+-..-..+.
T Consensus 158 dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agL 237 (466)
T KOG0686|consen 158 DHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGL 237 (466)
T ss_pred HHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHH
Q ss_pred hhhhhcCcchhHHHHHHHHhhccCC------chHHHHHHHHHHHhhcCCHHHHHHHHHHc-----ccchHhhHHHHHHHH
Q 040965 74 AGLVNEGGLYLGKQVHGYILRNEIV------LSVFMGTALIDLYGKVGCLERAIRVFKSM-----VIKDVCTWNAMISSL 142 (311)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~ 142 (311)
+.+. .+.+..|.+.|-........ |+..+....+.+..--++-+--..+.... .+..+..+..+...|
T Consensus 238 a~L~-lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy 316 (466)
T KOG0686|consen 238 ANLL-LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFY 316 (466)
T ss_pred HHHH-HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHh
Q ss_pred HcCCCHHHHHHHHHHHHHc-----CCCCcHHHHHHHHH
Q 040965 143 ASNSREKEALVMFDEMKEK-----GLRANEITFVAVLT 175 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~ 175 (311)
. +++...++++++++.. -+.|.+.+...+|.
T Consensus 317 ~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 317 S--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred h--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.45 E-value=13 Score=30.52 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=67.6
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 221 (311)
...|.++.|++.|...+... ++....|..-..++.+.+++..|++=++..+. +.||. ..|-.-..+....|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHH
Confidence 45677888888888777663 44566666667777888888888887777763 45543 233333444455678888
Q ss_pred HHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 222 AKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 222 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
|.+.++.. ...-|..+-..+=...-..+..++-...+++..
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 87777766 222222222222222334444444444444444
No 437
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.67 E-value=1.4e+02 Score=28.40 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
..|...|++++|.++-+.-+..-..++..-...|.+.+++..|-++|.++ ...|..+.--+....+.+.-..
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHH------hcCCHH---------------HHHHHHHhC-CCCCCcchHHHHHHHHH
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLG------RAGLLS---------------EAKEFMRSM-PFEPDASVLGALLGACK 246 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~---------------~A~~~~~~~-~~~p~~~~~~~l~~~~~ 246 (311)
++.+=++ +++|...+-..++..+. +.++.+ ...+.|... ....+.....+....+.
T Consensus 438 ~L~KKL~--~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~ 515 (911)
T KOG2034|consen 438 FLDKKLD--RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLA 515 (911)
T ss_pred HHHHHHh--hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
..|+.+.+..+-.-+. -|..++.-+...|.+++|.+++..
T Consensus 516 ~~~~~e~ll~fA~l~~--------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 516 SHGRQEELLQFANLIK--------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HccCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
No 438
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.07 E-value=80 Score=25.53 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV 67 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 67 (311)
-.+.+-..+.+++++|+..|.+....| +..|..+.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg--~s~dek~~n 42 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKG--VSKDEKTLN 42 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCC--CChhhhhhh
Confidence 345666777788888888888888877 777777755
No 439
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=62.86 E-value=33 Score=20.98 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc--------------chhHHHHHHHHHHHHc
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL--------------ERWNRATDLRKAMVEA 298 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~ 298 (311)
+.+.|..++..+..-...+|..|+++...+.+. |....|.+-|++|...
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcCC
Confidence 344455555554443344445555555444332 4556666666666543
No 440
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.09 E-value=22 Score=27.53 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=46.2
Q ss_pred HHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
...+.++.+.+-+++.+.+. ..| ....|-.+...-.+.|+++.|.+.+++. .+.|+..
T Consensus 4 ~~~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45678899999999999984 444 4577888888888999999999999887 6666544
No 441
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.46 E-value=61 Score=29.58 Aligned_cols=47 Identities=4% Similarity=-0.014 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccccH
Q 040965 137 AMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
.|..+|..+|++-.+..+++.+... |-+.-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555566666666666665555432 1111233455555555555543
No 442
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.15 E-value=1.2e+02 Score=26.82 Aligned_cols=41 Identities=7% Similarity=-0.133 Sum_probs=20.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
..+..++.+....+....|..++.++.+.+.+.......|+
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33344444443333445667777777665544333333333
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.61 E-value=34 Score=20.43 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=37.2
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.|..+.++.++..+++-.-++.++..+.++...+.-+...|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3566777788888888778888888888888776666667777777766554
No 444
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.04 E-value=39 Score=29.45 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHhhcCCHHHHHHHHHHc---------ccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-------cCCCCc---
Q 040965 109 DLYGKVGCLERAIRVFKSM---------VIK---DVCTWNAMISSLASNSREKEALVMFDEMKE-------KGLRAN--- 166 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~~~--- 166 (311)
+.+.-.|++.+|.+++... +.| .-..||.|...+.+.|.+.-+..+|.+..+ .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4455679999999988765 111 233467787788888888888888877664 354442
Q ss_pred --------HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 167 --------EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 167 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+||.=+ .|...|++-.|.+.|.+.... +..++..|-.|..+|.-
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 23455444 577899999999999998864 45677789998888763
No 445
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=59.71 E-value=26 Score=30.24 Aligned_cols=147 Identities=15% Similarity=0.077 Sum_probs=70.2
Q ss_pred HhcCCHhHHHHHHHHhhcC---CCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh
Q 040965 37 VRNGCFGEAICVFKNMMGN---VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (311)
++.|..+-..-+++..... ++.+..|..++.----.++... .|.++-+..+++.- ..+..+..|-++=+.+.|-
T Consensus 50 aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsa-AGHl~vVk~L~~~g--a~VN~tT~TNStPLraACf 126 (615)
T KOG0508|consen 50 ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASA-AGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACF 126 (615)
T ss_pred hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhc-cCcHHHHHHHHHhc--CccccccccCCccHHHHHh
Confidence 4777777776666655322 1112222222111111111222 44455444444433 1222233443345666677
Q ss_pred cCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHccccHHHHHH
Q 040965 114 VGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF--VAVLTACARAQLVELGLE 188 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~ 188 (311)
-|+++-...+++.--.+ |....+.|+-++. .|+.+-+.. +.+.|..++..++ ++.+.-|..+|.++-..-
T Consensus 127 DG~leivKyLvE~gad~~IanrhGhTcLmIa~y-kGh~~I~qy----Lle~gADvn~ks~kGNTALH~caEsG~vdivq~ 201 (615)
T KOG0508|consen 127 DGHLEIVKYLVEHGADPEIANRHGHTCLMIACY-KGHVDIAQY----LLEQGADVNAKSYKGNTALHDCAESGSVDIVQL 201 (615)
T ss_pred cchhHHHHHHHHcCCCCcccccCCCeeEEeeec-cCchHHHHH----HHHhCCCcchhcccCchHHHhhhhcccHHHHHH
Confidence 78887777777544333 3333333333322 355444433 3445556655544 566677777777765555
Q ss_pred HHH
Q 040965 189 LFH 191 (311)
Q Consensus 189 ~~~ 191 (311)
++.
T Consensus 202 Ll~ 204 (615)
T KOG0508|consen 202 LLK 204 (615)
T ss_pred HHh
Confidence 444
No 446
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.07 E-value=82 Score=24.38 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 040965 210 VDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~ 229 (311)
|......|+.++|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 44455666666666666665
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.80 E-value=87 Score=24.59 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCC-----------ccchhhHHHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEV-----------VPIMEHYGCVV 210 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~ 210 (311)
|.+..+.+--.++.+-.+..++..+......++ +...|++.+|+..++.-...+|. .|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444333344444444445555544444444 45667777777766655443322 23333333333
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040965 211 DLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~ 229 (311)
.. +..+++++|.+++.++
T Consensus 247 ~~-~~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 247 QA-CLKRNIDEALKILAEL 264 (333)
T ss_pred HH-HHhccHHHHHHHHHHH
Confidence 32 2344555665555554
No 448
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.68 E-value=14 Score=18.42 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=13.6
Q ss_pred CHhHHHHHHHHhhcCCCCCCCchHHHH
Q 040965 41 CFGEAICVFKNMMGNVNLVRPNEATYV 67 (311)
Q Consensus 41 ~~~~A~~~~~~~~~~~~~~~p~~~~~~ 67 (311)
.++.|..+|++... +.|+..+|.
T Consensus 2 E~dRAR~IyeR~v~----~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL----VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH----hCCCchHHH
Confidence 35566666666665 556655554
No 449
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=58.20 E-value=59 Score=22.47 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcCChhHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL-GALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~ 258 (311)
+..++..++.-.|..++|.+++...+.-++-... .-++..|....+-++..++-
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455555555566666666666665433333222 23455555555554444443
No 450
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.90 E-value=66 Score=22.92 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHcccc-HHHHHHHHHHhhccCCCccchhhH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGL-----RANEITFVAVLTACARAQL-VELGLELFHSMLGKFEVVPIMEHY 206 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 206 (311)
...++++......+++...+.+++.+..... ..+...|..++.+..+..- .-.+..+|.-+.+. +..+++.-|
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-~~~~t~~dy 118 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-DIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc-CCCCCHHHH
Confidence 3467777777778888888888887743210 2245678888888877666 45667777777664 778888888
Q ss_pred HHHHHHHHhc
Q 040965 207 GCVVDLLGRA 216 (311)
Q Consensus 207 ~~l~~~~~~~ 216 (311)
..++.++.+.
T Consensus 119 ~~li~~~l~g 128 (145)
T PF13762_consen 119 SCLIKAALRG 128 (145)
T ss_pred HHHHHHHHcC
Confidence 8888877654
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.67 E-value=2e+02 Score=28.47 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=85.1
Q ss_pred HHHcCCCHHHHHHHHHHHHH-----------------------cCCCCc-----HHHHHHHHHHHHccccHHHHHHHHHH
Q 040965 141 SLASNSREKEALVMFDEMKE-----------------------KGLRAN-----EITFVAVLTACARAQLVELGLELFHS 192 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~-----------------------~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (311)
+|...|+..+|+..|.+... .|-.|+ ..-|..++..+-+.+..|.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35566777777777766532 222232 23466777777788888888887777
Q ss_pred hhccCCC-ccc-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCChh------------HHHH-
Q 040965 193 MLGKFEV-VPI-MEHYGCVVDLLGRAGLLSEAKEFMRSMPF-EPDASVLGALLGACKIHGAVD------------LCHE- 256 (311)
Q Consensus 193 ~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~------------~a~~- 256 (311)
+++..+. .|+ ..+++.+.+-....|.+-+|...+-.... ..-......|+..+...|.++ +...
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~ 1088 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDF 1088 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHH
Confidence 7664221 122 34566677777788888888777655421 111234555665556666543 3333
Q ss_pred HHHHHHhcCCCchh-HHHHHHHHHhccchhHHHHHH
Q 040965 257 VGRRLLELQPKHCG-RYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 291 (311)
+++..-+..|.... .|..|-..+...++|.+|-.+
T Consensus 1089 l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1089 LRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 33333333443322 444444455677788776554
No 452
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.66 E-value=36 Score=28.11 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch-hHHHHHHHHHh
Q 040965 218 LLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC-GRYVVLSNIHA 280 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~ 280 (311)
..+++..++..+ ..-|+. .-|..++......|.++..+.+|++++..+.... ..-..+++.+.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456777777766 334554 4466677777788888888888888887654322 24445555544
No 453
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=1.2e+02 Score=25.77 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=60.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHccccHHHHHHHHHHhhccCCCccch-
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV------------LTACARAQLVELGLELFHSMLGKFEVVPIM- 203 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 203 (311)
.|...+-..|+.++|..++.++. +.||..+ ++.|...+++-.|.-+-+++..++--.|+.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 45566677899999999887753 2233322 456777888888888888776664445553
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 204 ----EHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 204 ----~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.-|+.++......+.+=.+-+.|+.+
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34777888777888888888888777
No 454
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.54 E-value=89 Score=24.27 Aligned_cols=104 Identities=23% Similarity=0.170 Sum_probs=63.5
Q ss_pred HHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 136 NAMISS--LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 136 ~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
...+.+ +...+++++|.+.+-+- .+.|+- -..++.++...|+.+.|..+++.+.. .-.+......++..
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-
Confidence 334444 45678888888887432 222221 22467777778999999999888742 22223333443444
Q ss_pred HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 040965 214 GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 248 (311)
..++.+.+|..+-+...-.-....+..++..+...
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 67789999999888774222245666677666543
No 455
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.37 E-value=33 Score=27.96 Aligned_cols=75 Identities=5% Similarity=-0.033 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGAL-LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
|+..|...+.--.+.|-+.+.-.++.+. ...| |+..|-.- -.-+...++++.+..+|.+.++++|+++..|....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 3444444444334445555555555554 2233 33333221 12245677888888888888888887776665433
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.13 E-value=62 Score=22.38 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhccCCch-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLS-VFMGTALIDLYGKVGCLERAIRVFK 125 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (311)
+...++|..|.++|+-.. ...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445667777776665443 2344455556666677777776664
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.90 E-value=1.2e+02 Score=27.09 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCc-chHH---HHHHHHHhcCChhHHHHHHHHHHh--cCCCchh---------
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSMPFEPDA-SVLG---ALLGACKIHGAVDLCHEVGRRLLE--LQPKHCG--------- 270 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~---~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--------- 270 (311)
...|+.-|.+.+++++|..++..|...... ..|. .++..+.+..--++-+..++.++. ..|..+-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 345667788888888888888888544322 2233 333334444445555666666664 1122210
Q ss_pred -----HHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 271 -----RYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 271 -----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.-..+...+.|.+++++|..+--++-.
T Consensus 491 d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~ 522 (545)
T PF11768_consen 491 DPVSDLARRFFHHLLRYQRFEKAFLLAVDIGD 522 (545)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 111233345567777777766555443
No 458
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=56.60 E-value=1.9e+02 Score=27.90 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
-.+.|.++.+.--..|..++..-...+...|++..|.+++.++.+..+-.++...|..++..+...|.-.
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H 1284 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNH 1284 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchH
Confidence 3344444443211223444444444455667777777777777665455666666666666666666543
No 459
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.23 E-value=1.1e+02 Score=25.03 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++++.+.++ ++.|.-.++..+.-.+.+.=.+..++.+++.+
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 445555443 66666555555555555555666666666665
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.16 E-value=1.2e+02 Score=27.84 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=63.3
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccC-CCccchhhHHHHHHHHHhcCCHH------HHHHHHHhCCCCCCcchHHHHHHH
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKF-EVVPIMEHYGCVVDLLGRAGLLS------EAKEFMRSMPFEPDASVLGALLGA 244 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~l~~~ 244 (311)
.++.+|...|++..+.++++...... |-+.-...||..++...+.|.++ .|.+.+++..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78999999999999999999987542 22223446777888888888754 566777777777888999888876
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 040965 245 CKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~ 263 (311)
....-.-....-++.+.+.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 5432222333334444443
No 461
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=1.2e+02 Score=25.14 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=78.7
Q ss_pred CCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc-cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-------
Q 040965 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK------- 130 (311)
Q Consensus 59 ~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 130 (311)
+..|..-++.+..+- ..++++-.+..+...+. |-.--...+......||+.|+.+.|++.+.+..+.
T Consensus 66 i~~D~~~l~~m~~~n-----eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k 140 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKAN-----EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK 140 (393)
T ss_pred eeccHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 566666666666421 22244444455555443 22223456667788999999999999999876443
Q ss_pred -hHhhHHH-HHHHHHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccccHHHHHHHHHHhhccC
Q 040965 131 -DVCTWNA-MISSLASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARAQLVELGLELFHSMLGKF 197 (311)
Q Consensus 131 -~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 197 (311)
|+..+.+ +.-.|....-..+-++..+.+.+.|...+. .+|..+- |....++.+|-.+|-+....+
T Consensus 141 iDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 141 IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 3333332 222344444455556666666677765543 3444432 556678899988888877653
No 462
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=55.68 E-value=24 Score=25.62 Aligned_cols=25 Identities=0% Similarity=0.131 Sum_probs=14.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCchHHHH
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNEATYV 67 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 67 (311)
..+.+++.+++.+..+ +..+...|.
T Consensus 47 k~np~~~~~~l~~~~~----l~d~aeafa 71 (164)
T PF07840_consen 47 KNNPEKVLEILAELDK----LEDDAEAFA 71 (164)
T ss_dssp HH-HHHHHHHHHCCTT----S-SSHHHHH
T ss_pred HHCHHHHHHHHHHhhh----cccCHHHHH
Confidence 3567888888888766 444544443
No 463
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=1.1e+02 Score=24.80 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=64.5
Q ss_pred cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch------HhhHHHHH---HHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD------VCTWNAMI---SSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
|-.--...+..+...|++.++.+.+.++..+..+.. ...+.+.| -.|....-.++-++..+.|.+.|...+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 333346778889999999999999999888764442 12233333 334445556788888888888886554
Q ss_pred H----HHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 167 E----ITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 167 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
. .+|..+. +....++.+|-.++...+..
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 3 2333332 34456788888887777654
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.28 E-value=1e+02 Score=24.18 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-ccccHHHHHHHHHHhh
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA-RAQLVELGLELFHSML 194 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 194 (311)
++...-+.++++++.+.++++...+...+..-.+.+-.+|- ..|..-.+++++....
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 44555666777777777777776655555444444444331 2233344444444433
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.19 E-value=1.1e+02 Score=24.78 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
....+..+...|++.++.+.+.+..++..+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345667777778888887777777665443
No 466
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=54.92 E-value=29 Score=21.29 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=21.0
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV 114 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (311)
.++.+.+.+++++..+.|.+|.......+..+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 566777777777777666666555444444444333
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.72 E-value=1.2e+02 Score=24.73 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=62.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
.++..+.+.+++.+..+.+..+ .....-...+..+...|++..|++++.+..+. .. ...-|..+=..- .++++
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~~L~e 175 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---SQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---HHHHH
Confidence 3556666666666666666655 23333445567777889999999988887653 10 111111111111 11121
Q ss_pred HH--------HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 186 GL--------ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 186 a~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
-. ..|..+.. .-|+..|..+..+|.-.|+...+.+-+...
T Consensus 176 ~~~~i~~~ld~~l~~~~~----~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQ----DFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 12 22233322 335567999999999888877766544443
No 468
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.62 E-value=61 Score=21.55 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc--hHhhHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCCC
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASN--SREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~~ 165 (311)
..++..|...|+.++|...+.++..| .......++...... ...+.+..++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 34566777788999999999887555 122233333333333 23344556666666665443
No 469
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.44 E-value=1.1e+02 Score=26.45 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..|+.-|...|++.+|...+.++--| ....+.+++.+.-+.|+-...+.++++.-+.|.. |-+.+-.+|.+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhh
Q ss_pred c
Q 040965 182 L 182 (311)
Q Consensus 182 ~ 182 (311)
+
T Consensus 589 d 589 (645)
T KOG0403|consen 589 D 589 (645)
T ss_pred c
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=54.08 E-value=59 Score=23.85 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=6.6
Q ss_pred ccHHHHHHHHHHhhc
Q 040965 181 QLVELGLELFHSMLG 195 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~ 195 (311)
++.-.|.++++.+.+
T Consensus 39 ~~hlSa~eI~~~L~~ 53 (169)
T PRK11639 39 PGAISAYDLLDLLRE 53 (169)
T ss_pred CCCCCHHHHHHHHHh
Confidence 333444444444443
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.83 E-value=46 Score=19.87 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=25.2
Q ss_pred cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.+....++.++..++...-.+.++..+.++.+.|. .+..+|..-++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34444555555555555556666666666665553 24444444444443
No 472
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.27 E-value=1e+02 Score=23.70 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCCC----cHHH-HHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 135 WNAMISSLASNSRE-------KEALVMFDEMKEKGLRA----NEIT-FVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 135 ~~~l~~~~~~~~~~-------~~a~~~~~~m~~~~~~~----~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
+.-+...|-..|+. ..|.+.|.+..+..-.| +..+ .-.+.....+.|+.++|.+.|.++...
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33444455555553 34555555544332221 2222 233444566777888888888777765
No 473
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.99 E-value=73 Score=21.93 Aligned_cols=65 Identities=26% Similarity=0.227 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCchhHHH----HHHHHHhccchhHHHHHHHHHHHHc
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLL-------ELQPKHCGRYV----VLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
|...+..|-.++...|++++++.--+..+ ++..+.-..|. .-..++...|+.++|...|+..-+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
No 474
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.96 E-value=2.5e+02 Score=28.10 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C-
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMISSLASNSREKEALVMFDEMKEK-----G- 162 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~- 162 (311)
....|..|...+-+.|+.++|+..-....-. +...|..+.-.....++...|...+.+.... |
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3455555556666666666666655443110 2233444443444444555555554443321 1
Q ss_pred -CCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 163 -LRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 163 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.+|...+++.+-..+...++.+.|.++++.+.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESAL 1084 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 12223333333333334455555555555544
No 475
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.57 E-value=1.8e+02 Score=26.26 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=78.5
Q ss_pred hhhhhcCChHHHHHHHHHh-------ccc-----------------cHHHHHH---HHHHHHhcCCHhHHHHHHHHhhcC
Q 040965 3 DGYVKNGDMDSAILLFENM-------LKR-----------------DVVSWTS---IINGFVRNGCFGEAICVFKNMMGN 55 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~-------~~~-----------------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~ 55 (311)
..+-.+|+.+.|..+.++. ..| |...|-+ -+..+.+.|.+..|++..+.+.+.
T Consensus 292 ~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 292 DIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 4566777777776666554 222 3333333 345567889999999999998884
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc---cCCchHHHHHHHHHHHhhcCC---HHHHHHHHHHccc
Q 040965 56 VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---EIVLSVFMGTALIDLYGKVGC---LERAIRVFKSMVI 129 (311)
Q Consensus 56 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 129 (311)
. ..-|+.....+|..++...+. ++-.+++++..... ..-||...-..+...|.+... -+.|...+.++.+
T Consensus 372 d--p~eDPl~~l~~ID~~ALrare--YqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 372 D--PSEDPLGILYLIDIYALRARE--YQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred C--CcCCchhHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 4 223566666677766544434 77677776665433 234554443455566665544 3455555655544
Q ss_pred chHhhHHHHHHH
Q 040965 130 KDVCTWNAMISS 141 (311)
Q Consensus 130 ~~~~~~~~l~~~ 141 (311)
..+...+-|+..
T Consensus 448 ~~P~vl~eLld~ 459 (665)
T KOG2422|consen 448 HHPLVLSELLDE 459 (665)
T ss_pred hCcHHHHHHHHh
Confidence 444444444443
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.56 E-value=1.2e+02 Score=24.20 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ |...-..++ -|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 4667777888888999988888877555444444432233222222222222 222223333 3455
Q ss_pred cccHHHHHHHHHHhhc
Q 040965 180 AQLVELGLELFHSMLG 195 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~ 195 (311)
.+++..|...++...+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6777777777766554
No 477
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.56 E-value=1.3e+02 Score=24.52 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=10.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
|+..|..+..+|...|+.+.+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555555555555444333
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.24 E-value=38 Score=22.73 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444445555566777777777666555666655555566655543
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.70 E-value=60 Score=25.90 Aligned_cols=55 Identities=25% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+...++++.|....++.+..+|.++.-..--+.+|.+.|...-|..-+....++
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 4566667777777777777777776655555566666666666666666655544
No 480
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.19 E-value=2.7e+02 Score=27.91 Aligned_cols=154 Identities=12% Similarity=-0.001 Sum_probs=93.0
Q ss_pred HHHHcCCCHHHHHH------HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc----CCC--ccchhhHH
Q 040965 140 SSLASNSREKEALV------MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK----FEV--VPIMEHYG 207 (311)
Q Consensus 140 ~~~~~~~~~~~a~~------~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~ 207 (311)
......|.+.++.+ ++......-.++....|..+...+-+.++.++|+..=.+..-- .|. .-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34455666776666 5553322222445567788888888999999998775443211 022 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---------CCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCC---ch
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM---------PFEPDAS-VLGALLGACKIHGAVDLCHEVGRRLLE-----LQPK---HC 269 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~ 269 (311)
.+.......++...|...+.+. ...|... ++..+-..+...++++.|.++++.+.. .+|. ..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666777777777766554 2234333 333333334456889999999998875 3333 33
Q ss_pred hHHHHHHHHHhccchhHHHHHHHH
Q 040965 270 GRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.+|..+.+.+...+++..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Confidence 467777777777777766554433
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.99 E-value=88 Score=22.27 Aligned_cols=63 Identities=24% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
++.+.+.+.|.+++.. -..++..+...++.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 3445556677665543 345566667777778888888888765 33333333333334444333
No 482
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.68 E-value=34 Score=17.48 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=6.7
Q ss_pred HHHhcCChhHHHHH
Q 040965 244 ACKIHGAVDLCHEV 257 (311)
Q Consensus 244 ~~~~~g~~~~a~~~ 257 (311)
.+...|++++|..+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34455555555555
No 483
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.25 E-value=64 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHH
Q 040965 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEA 151 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 151 (311)
...+.+++.++++.+..+...+|..+..++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445567777777777777777777777777666654443
No 484
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=50.22 E-value=1.9e+02 Score=26.02 Aligned_cols=96 Identities=6% Similarity=0.049 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHc-c-------ccHHHH
Q 040965 116 CLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM-KEKGLRANEITFVAVLTACAR-A-------QLVELG 186 (311)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~-~-------~~~~~a 186 (311)
....-..+|+++...++..-..+-..-...+....+.++++.+ ......|...+|.-+...+.+ . .+...+
T Consensus 359 ~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 359 NSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred cHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHH
Confidence 4455555555554444433332222222222244444444432 122333555555555555544 1 233344
Q ss_pred HHHHHHhhccCCCccchhhHHHHHH
Q 040965 187 LELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
..++-.++.-.+..-+..+|..+..
T Consensus 439 l~vlf~~LDf~~~r~n~~aW~~l~~ 463 (547)
T PF14929_consen 439 LKVLFEFLDFAGWRKNIQAWKLLAK 463 (547)
T ss_pred HhcchhcccccccccccHHHHHHHH
Confidence 4444444443334444445544443
No 485
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.83 E-value=1.8e+02 Score=25.65 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHhcCChhHHHHHHHHHH-hcC------CC--chhHHHHHHHHHhccchhHHHHHHHHHHHH-------ccCCCCCccc
Q 040965 244 ACKIHGAVDLCHEVGRRLL-ELQ------PK--HCGRYVVLSNIHAGLERWNRATDLRKAMVE-------AGIRKIPAYS 307 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~-~~~------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~ 307 (311)
.+...|++.+|.+++-..- ... |. ....++.|+-...+.|.+.-+..+|.+..+ .|++|.+.++
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3667899999988776543 111 21 222346777777788888888877777663 5777766554
Q ss_pred c
Q 040965 308 L 308 (311)
Q Consensus 308 ~ 308 (311)
.
T Consensus 329 l 329 (696)
T KOG2471|consen 329 L 329 (696)
T ss_pred h
Confidence 3
No 486
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=49.76 E-value=1.6e+02 Score=25.02 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH------------HHHHHHhcCChhHHHHHHHHHHhcC---CCc---
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA------------LLGACKIHGAVDLCHEVGRRLLELQ---PKH--- 268 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--- 268 (311)
..|...+-..|+.++|..++.+..+. ||.+ -++.|...+|+-.|.-+-+++.... |+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 45667788899999999998887432 2222 2356778889988888888776522 221
Q ss_pred -hhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 269 -CGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 269 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
...|..+++.....+.+=++.+.|+.+-+.|-...
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 23677888888888888889999988877654443
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.74 E-value=1.9e+02 Score=25.83 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=12.0
Q ss_pred hhhhhhcCChHHHHHHHHHh
Q 040965 2 IDGYVKNGDMDSAILLFENM 21 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~ 21 (311)
+.-|.+.+++++|..++..|
T Consensus 415 ~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 415 ISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHhcCCHHHHHHHHHhC
Confidence 34456666666666666665
No 488
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=49.41 E-value=2.3e+02 Score=26.64 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh----h----hhhcCcchhHHHHHHHHhhcc-C
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA----G----LVNEGGLYLGKQVHGYILRNE-I 97 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~----~----~~~~~~~~~a~~~~~~~~~~~-~ 97 (311)
.....++.++...|+++-|.+++..-.... -+.......++.+.. . ..+.|....|.++++-+...- -
T Consensus 433 ~~~~~~l~~LL~~~~f~la~~~~~~~~~~~---l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 433 EIEEIFLEALLSSGRFSLAKSLYEESSSSP---LSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT------TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhcCCcCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 456788889999999999999998854321 233444444544421 1 123566778888777766540 0
Q ss_pred CchHHHHHHHHHHHhhcCCH
Q 040965 98 VLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~ 117 (311)
.+...-...|+.+.....++
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f 529 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEF 529 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhC
Confidence 11233334455554444443
No 489
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.96 E-value=2.1e+02 Score=25.75 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHH--------------
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-------P-FEPDASVLGALLGACKIHGAVDLCHEVGRRL-------------- 261 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------------- 261 (311)
.-|+.+...|.+.+++.+|++.+-+. + .+-|...|.-++...- .-+...++.-...
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAn--eLiP~~lk~~~~~~~~~~e~~~e~~~~ 396 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIAN--ELIPNVLKSESSGHSARSERHREDSPI 396 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHH--THHHHHHHHHHCHHHT-----------
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHH--HHHHHHHHhhhcccCcccccccccccc
Confidence 34677888899999999999887665 1 1235566655543210 0011111100000
Q ss_pred ---HhcCCCchhHHHHHHHHHhccchhHHH
Q 040965 262 ---LELQPKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 262 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
...-..++.+|..|++.|-....|++.
T Consensus 397 ~~~~~~il~Dpecfa~lLrFYDgIC~WEEG 426 (618)
T PF05053_consen 397 TYQAGSILRDPECFANLLRFYDGICKWEEG 426 (618)
T ss_dssp -----GGGG-HHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhccCHHHHHHHHHHHhhceecccC
Confidence 001245678999999999888888873
No 490
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.89 E-value=1.5e+02 Score=23.89 Aligned_cols=19 Identities=11% Similarity=-0.185 Sum_probs=11.3
Q ss_pred cchhHHHHHHHHhhccCCc
Q 040965 81 GLYLGKQVHGYILRNEIVL 99 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~ 99 (311)
+..+|..+++...+.|..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred CHHHHHHHHHHHHHcCChh
Confidence 4566666666666666443
No 491
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.54 E-value=99 Score=26.89 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.+++-.++++.+.+.+..+ ....-+++|.|.+++++|...+++-.+.|.
T Consensus 69 ~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~ 117 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGR 117 (480)
T ss_pred cHHHHHHHHHHHHHccCCC--ccceeeecccccccHHHHHHHHHhhhhcCc
Confidence 4566666666666554333 344567777888888888777777666443
No 492
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.23 E-value=2.2e+02 Score=25.75 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=8.4
Q ss_pred HHHHHHHHHhccc
Q 040965 271 RYVVLSNIHAGLE 283 (311)
Q Consensus 271 ~~~~l~~~~~~~g 283 (311)
++..++..|....
T Consensus 485 al~~lv~lY~~r~ 497 (665)
T KOG2422|consen 485 ALMLLVKLYANRN 497 (665)
T ss_pred HHHHHHHHHHhhh
Confidence 6667777776543
No 493
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=47.15 E-value=1.4e+02 Score=24.63 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 120 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
..++++.+.+.++....+++++... |+.+.-...++.+.+.|+.++......+..
T Consensus 295 ~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae 349 (354)
T TIGR01914 295 WPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAE 349 (354)
T ss_pred hHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 3333333333344444444443332 333333444444444444444444444443
No 494
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.11 E-value=2.2e+02 Score=25.79 Aligned_cols=211 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+...++.+.....--.+....+..|+.. .+.-+.+.-.++++++.. . ...+..++++....|-.....-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~-lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRL-LRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHH-HHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch-------hhHHHHHHHHHhcCCH------HHHHHHHHh
Q 040965 162 GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-------EHYGCVVDLLGRAGLL------SEAKEFMRS 228 (311)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~------~~A~~~~~~ 228 (311)
.+.+....-........-..--.+.++.+..+.+.....+.. .++..++.-+|..... ++....+.+
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~ 449 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHE 449 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q ss_pred C----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc--chhHHHHHHHHHH
Q 040965 229 M----PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL--ERWNRATDLRKAM 295 (311)
Q Consensus 229 ~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m 295 (311)
. .-.-|..--...+.++...|.......+..-+....+.+...-...+.++.+. ...+.+..++-.+
T Consensus 450 ~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 450 LLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred HHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
No 495
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.84 E-value=2.2e+02 Score=25.73 Aligned_cols=274 Identities=11% Similarity=-0.016 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhccc-cHHHHHHHHHH-----HHhcCCHhHHHHHHHHhhc-------CCCCCCCchHHHHHHHHHhhh-h
Q 040965 11 MDSAILLFENMLKR-DVVSWTSIING-----FVRNGCFGEAICVFKNMMG-------NVNLVRPNEATYVSVLSSCAG-L 76 (311)
Q Consensus 11 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~p~~~~~~~ll~~~~~-~ 76 (311)
...|.++++...+. +...-..+... +....+.+.|+..|+.+.+ .+ .++- ..-+-.+|.. .
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a---~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPA---QYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCcc---ccHHHHHHhcCC
Confidence 46678888777443 44433333322 3456789999999999876 44 2222 2222222221 1
Q ss_pred hhcC-cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc---CCHHHHHHHHHHcccc-hHhhHHHHHHHHH----cCCC
Q 040965 77 VNEG-GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV---GCLERAIRVFKSMVIK-DVCTWNAMISSLA----SNSR 147 (311)
Q Consensus 77 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~ 147 (311)
.... +.+.|..++.+..+.| .|+...+ +..+|... .+...|..+|...... +...+-.+..+|. ...+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCC
Confidence 1122 5678999999888887 3444433 33333332 4678999999888544 3333333333332 3568
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH---HHh----cCCHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL---LGR----AGLLS 220 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~ 220 (311)
...|..++++..+.| .|...--...+..+.. +..+.+...+..+... +.......-..++.. ... ..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchh
Confidence 899999999998887 3332222233333444 6666666665555433 322111111111111 111 12445
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHHHHH
Q 040965 221 EAKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRATDLR 292 (311)
Q Consensus 221 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 292 (311)
.+...+.+....-+......+-..|.. ..+++.|...+..+.... ......+..++.. .. +..|.+++
T Consensus 457 ~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 457 RAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 555555555323333333333333221 235677777777766554 3344444444332 23 56677777
Q ss_pred HHHHHcc
Q 040965 293 KAMVEAG 299 (311)
Q Consensus 293 ~~m~~~~ 299 (311)
+...+.+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 7665543
No 496
>PRK09857 putative transposase; Provisional
Probab=46.71 E-value=1.6e+02 Score=24.01 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
..++.-....++.++-.++++.+.+..|.......+++.-+.+.|.-+++.++.++|...|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444433456777777777777776666655566678888888888888899999999888763
No 497
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=46.67 E-value=1.5e+02 Score=23.54 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=29.0
Q ss_pred hhcCChHHHHHHHHHhccc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 040965 6 VKNGDMDSAILLFENMLKR--DVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 56 (311)
|-+|+++.|++.++.++.. |...+...+.--++.|+++...-++.+.....
T Consensus 21 CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~ 73 (267)
T PF05476_consen 21 CLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRR 73 (267)
T ss_pred HhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhc
Confidence 4456666666666666332 44444455555556666666666666655443
No 498
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=46.66 E-value=61 Score=19.85 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
..++.+.+.+++++..+.|..|.......+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457888888888888877777766666656665555443
No 499
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.47 E-value=19 Score=21.36 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCch
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNE 63 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~ 63 (311)
.=+++.|+..|.++...+. ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~-IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGS-IPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCC-CChhh
Confidence 3488999999999987663 66654
No 500
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.16 E-value=65 Score=20.39 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=24.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 040965 16 LLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 56 (311)
.+++.+...++.+....-..-+...+.++|.++++.+..+|
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG 60 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG 60 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 34555555555444444444455666777777777776655
Done!