Query 040965
Match_columns 311
No_of_seqs 464 out of 1328
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 03:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.6E-33 1.6E-37 237.1 20.3 187 27-216 27-223 (501)
2 2xpi_A Anaphase-promoting comp 100.0 4.3E-31 1.5E-35 232.2 29.3 290 2-301 279-582 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-31 5.5E-36 227.6 20.6 199 44-248 8-223 (501)
4 2xpi_A Anaphase-promoting comp 100.0 4.4E-30 1.5E-34 225.8 28.2 288 2-298 157-504 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-26 5.3E-31 192.7 30.1 285 4-298 76-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-25 1.3E-29 184.4 31.6 283 4-298 42-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 8.4E-25 2.9E-29 185.6 29.5 287 2-300 33-360 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 8.8E-23 3E-27 173.2 30.4 284 2-294 67-405 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 2E-22 6.8E-27 165.6 31.1 287 3-300 11-337 (359)
10 2gw1_A Mitochondrial precursor 99.9 2.4E-22 8.1E-27 173.3 28.6 288 3-301 14-404 (514)
11 3hym_B Cell division cycle pro 99.9 2.7E-21 9.1E-26 157.2 26.9 263 25-297 21-298 (330)
12 2gw1_A Mitochondrial precursor 99.9 2.1E-21 7.2E-26 167.3 26.0 296 2-300 46-446 (514)
13 3hym_B Cell division cycle pro 99.9 1.1E-21 3.7E-26 159.5 22.8 275 3-286 30-322 (330)
14 1fch_A Peroxisomal targeting s 99.9 7.9E-22 2.7E-26 162.9 20.6 282 5-295 35-356 (368)
15 3ieg_A DNAJ homolog subfamily 99.9 4.4E-20 1.5E-24 151.6 29.6 275 3-283 45-354 (359)
16 3fp2_A TPR repeat-containing p 99.9 9.1E-21 3.1E-25 164.3 26.1 287 3-301 33-410 (537)
17 3mkr_A Coatomer subunit epsilo 99.9 6.2E-20 2.1E-24 146.5 28.3 271 3-292 7-288 (291)
18 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.7E-24 157.6 30.3 218 79-301 256-494 (537)
19 4eqf_A PEX5-related protein; a 99.9 1.1E-20 3.7E-25 156.0 22.0 261 25-294 64-352 (365)
20 1fch_A Peroxisomal targeting s 99.9 7.1E-21 2.4E-25 157.2 19.4 261 35-301 34-317 (368)
21 3cv0_A Peroxisome targeting si 99.9 8.2E-20 2.8E-24 148.2 22.9 262 25-296 20-313 (327)
22 3mkr_A Coatomer subunit epsilo 99.9 2.4E-19 8.3E-24 143.0 24.4 249 33-301 6-267 (291)
23 4eqf_A PEX5-related protein; a 99.9 5.4E-20 1.8E-24 151.9 20.2 220 78-300 77-312 (365)
24 1b89_A Protein (clathrin heavy 99.9 1.3E-21 4.6E-26 160.2 10.2 252 6-293 14-267 (449)
25 3cv0_A Peroxisome targeting si 99.8 3.8E-19 1.3E-23 144.2 18.8 253 3-266 29-317 (327)
26 2pl2_A Hypothetical conserved 99.8 2.6E-18 9E-23 131.2 20.0 196 98-297 2-213 (217)
27 3spa_A Mtrpol, DNA-directed RN 99.8 2.9E-20 1E-24 164.3 9.5 148 99-249 125-286 (1134)
28 4g1t_A Interferon-induced prot 99.8 2.1E-17 7.2E-22 141.0 26.4 299 3-309 102-470 (472)
29 3uq3_A Heat shock protein STI1 99.8 3.2E-17 1.1E-21 128.2 23.7 208 79-299 18-237 (258)
30 3uq3_A Heat shock protein STI1 99.8 2.1E-17 7.3E-22 129.2 20.6 238 25-277 4-255 (258)
31 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.8E-17 9.5E-22 129.9 21.0 243 38-292 17-269 (275)
32 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-19 5.3E-24 159.7 7.1 116 131-247 126-248 (1134)
33 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 143.7 11.0 259 1-292 38-305 (449)
34 2ho1_A Type 4 fimbrial biogene 99.8 6.5E-17 2.2E-21 126.3 20.7 199 101-301 37-241 (252)
35 2vq2_A PILW, putative fimbrial 99.8 8.9E-17 3E-21 123.0 21.1 200 99-300 6-213 (225)
36 3u4t_A TPR repeat-containing p 99.8 7.4E-17 2.5E-21 127.4 19.0 245 28-282 5-268 (272)
37 2q7f_A YRRB protein; TPR, prot 99.7 8.5E-17 2.9E-21 124.7 17.3 193 103-298 25-222 (243)
38 2ooe_A Cleavage stimulation fa 99.7 6.4E-15 2.2E-19 127.6 30.7 289 5-300 22-456 (530)
39 3sf4_A G-protein-signaling mod 99.7 2.8E-16 9.6E-21 131.1 21.2 266 25-297 8-335 (406)
40 4a1s_A PINS, partner of inscut 99.7 9.9E-17 3.4E-21 134.4 18.2 265 26-297 48-371 (411)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-16 4E-21 126.3 17.6 218 79-300 18-246 (275)
42 2pl2_A Hypothetical conserved 99.7 3.8E-16 1.3E-20 119.2 19.5 194 24-229 3-211 (217)
43 2xm6_A Protein corresponding t 99.7 1.2E-14 4.3E-19 124.6 30.8 80 218-299 346-433 (490)
44 2h6f_A Protein farnesyltransfe 99.7 4.2E-16 1.5E-20 128.5 20.7 245 25-281 96-365 (382)
45 3ro2_A PINS homolog, G-protein 99.7 1.3E-16 4.5E-21 129.4 17.4 265 27-298 6-332 (338)
46 1ouv_A Conserved hypothetical 99.7 4.8E-15 1.6E-19 117.2 25.7 229 25-269 5-256 (273)
47 2xm6_A Protein corresponding t 99.7 2.1E-14 7.1E-19 123.2 31.6 273 8-297 56-359 (490)
48 2ho1_A Type 4 fimbrial biogene 99.7 3.2E-15 1.1E-19 116.6 24.3 191 79-272 50-246 (252)
49 3ulq_A Response regulator aspa 99.7 4.1E-16 1.4E-20 129.5 19.9 291 4-298 21-368 (383)
50 3u4t_A TPR repeat-containing p 99.7 5.7E-16 1.9E-20 122.3 19.8 220 78-301 15-253 (272)
51 3sf4_A G-protein-signaling mod 99.7 2.5E-16 8.6E-21 131.4 18.4 281 3-286 17-364 (406)
52 1ouv_A Conserved hypothetical 99.7 8.4E-15 2.9E-19 115.8 25.5 210 79-300 19-253 (273)
53 2q7f_A YRRB protein; TPR, prot 99.7 4.5E-16 1.5E-20 120.6 17.8 198 79-280 36-238 (243)
54 4g1t_A Interferon-induced prot 99.7 1.7E-14 6E-19 122.9 29.0 292 3-299 59-402 (472)
55 4abn_A Tetratricopeptide repea 99.7 3E-16 1E-20 133.8 16.6 208 82-294 84-317 (474)
56 2vq2_A PILW, putative fimbrial 99.7 1.1E-14 3.7E-19 111.3 23.0 192 79-273 21-220 (225)
57 3vtx_A MAMA; tetratricopeptide 99.7 2.9E-15 9.8E-20 111.2 18.6 164 132-298 5-170 (184)
58 2h6f_A Protein farnesyltransfe 99.7 3.2E-15 1.1E-19 123.2 20.3 217 78-299 109-349 (382)
59 4a1s_A PINS, partner of inscut 99.7 2.1E-15 7E-20 126.3 19.4 262 3-267 56-375 (411)
60 3ro2_A PINS homolog, G-protein 99.7 2.9E-15 1E-19 121.5 17.9 262 3-267 13-335 (338)
61 3q15_A PSP28, response regulat 99.7 1.4E-14 5E-19 120.0 20.8 291 5-297 22-364 (378)
62 3nf1_A KLC 1, kinesin light ch 99.7 2.3E-15 7.9E-20 120.9 15.4 198 101-298 69-307 (311)
63 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-14 5.8E-19 107.0 17.7 167 100-269 4-175 (184)
64 1xi4_A Clathrin heavy chain; a 99.6 3E-13 1E-17 123.9 27.9 235 25-293 1104-1340(1630)
65 2ond_A Cleavage stimulation fa 99.6 1.3E-13 4.5E-18 110.9 23.3 236 26-268 8-274 (308)
66 2ooe_A Cleavage stimulation fa 99.6 8.6E-13 3E-17 114.3 29.4 211 84-299 256-493 (530)
67 3as5_A MAMA; tetratricopeptide 99.6 1.5E-14 5.1E-19 107.0 15.6 167 136-305 12-180 (186)
68 2ond_A Cleavage stimulation fa 99.6 6.1E-13 2.1E-17 107.0 25.0 149 79-229 112-267 (308)
69 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-13 1.3E-17 113.9 24.3 45 12-56 55-104 (452)
70 3nf1_A KLC 1, kinesin light ch 99.6 8.3E-15 2.8E-19 117.7 13.4 240 25-267 26-310 (311)
71 4gyw_A UDP-N-acetylglucosamine 99.6 3.8E-14 1.3E-18 125.8 17.6 163 131-297 8-173 (723)
72 3ulq_A Response regulator aspa 99.6 1.3E-13 4.5E-18 114.4 19.7 259 36-295 22-332 (383)
73 1hz4_A MALT regulatory protein 99.6 3.9E-12 1.3E-16 105.1 27.7 266 28-298 16-322 (373)
74 4i17_A Hypothetical protein; T 99.6 2.3E-13 8E-18 104.4 18.8 189 79-278 20-223 (228)
75 3edt_B KLC 2, kinesin light ch 99.6 1.1E-13 3.7E-18 109.4 17.1 219 79-297 14-280 (283)
76 4i17_A Hypothetical protein; T 99.6 2.7E-13 9.4E-18 104.0 18.1 194 100-301 6-212 (228)
77 1hz4_A MALT regulatory protein 99.6 1.6E-12 5.3E-17 107.5 23.9 262 4-266 23-324 (373)
78 1xi4_A Clathrin heavy chain; a 99.6 1.7E-12 5.7E-17 119.1 25.0 255 3-290 1113-1376(1630)
79 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.3E-18 117.1 17.2 180 117-300 84-289 (474)
80 3as5_A MAMA; tetratricopeptide 99.5 5.4E-13 1.8E-17 98.5 17.1 166 101-269 8-178 (186)
81 3q15_A PSP28, response regulat 99.5 1E-11 3.4E-16 102.9 24.3 232 29-264 104-365 (378)
82 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-13 4.4E-18 116.8 11.2 279 3-300 11-353 (452)
83 4gyw_A UDP-N-acetylglucosamine 99.5 7.6E-13 2.6E-17 117.5 16.4 164 99-266 7-176 (723)
84 1qqe_A Vesicular transport pro 99.5 1.1E-12 3.9E-17 104.6 15.3 200 82-296 33-267 (292)
85 3qky_A Outer membrane assembly 99.5 5.7E-12 1.9E-16 98.8 18.1 186 100-288 14-251 (261)
86 1qqe_A Vesicular transport pro 99.5 1E-11 3.6E-16 99.0 19.5 213 41-273 32-278 (292)
87 3mv2_B Coatomer subunit epsilo 99.5 8.7E-11 3E-15 92.5 24.0 236 7-269 25-287 (310)
88 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.3E-11 7.8E-16 93.1 19.3 185 101-303 4-218 (225)
89 3qky_A Outer membrane assembly 99.4 1.2E-11 4.1E-16 96.9 17.9 172 129-301 12-227 (261)
90 3mv2_B Coatomer subunit epsilo 99.4 7.5E-11 2.6E-15 92.9 21.3 241 33-300 20-284 (310)
91 3edt_B KLC 2, kinesin light ch 99.4 1.6E-11 5.5E-16 96.8 17.3 220 5-229 11-278 (283)
92 2fo7_A Synthetic consensus TPR 99.4 1.6E-11 5.5E-16 85.4 14.4 128 170-299 4-133 (136)
93 2pzi_A Probable serine/threoni 99.4 7.3E-12 2.5E-16 111.4 13.2 168 112-284 402-583 (681)
94 3qou_A Protein YBBN; thioredox 99.4 5.1E-11 1.7E-15 94.7 16.8 177 117-297 102-283 (287)
95 2fo7_A Synthetic consensus TPR 99.3 5.2E-11 1.8E-15 82.7 14.3 131 134-267 3-135 (136)
96 3urz_A Uncharacterized protein 99.3 8.4E-11 2.9E-15 88.8 16.3 127 138-269 60-191 (208)
97 4ga2_A E3 SUMO-protein ligase 99.3 5.3E-12 1.8E-16 90.1 8.1 142 139-284 4-149 (150)
98 2vsy_A XCC0866; transferase, g 99.3 4.6E-11 1.6E-15 104.3 15.0 160 114-276 2-169 (568)
99 3rjv_A Putative SEL1 repeat pr 99.3 2.8E-10 9.5E-15 86.2 17.2 178 83-268 3-201 (212)
100 3rjv_A Putative SEL1 repeat pr 99.3 6.7E-10 2.3E-14 84.0 19.3 173 119-300 4-199 (212)
101 2ifu_A Gamma-SNAP; membrane fu 99.3 6.1E-11 2.1E-15 95.2 13.2 220 38-290 3-253 (307)
102 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.8E-10 1.6E-14 85.7 17.1 171 78-269 16-218 (225)
103 2vsy_A XCC0866; transferase, g 99.3 1.7E-10 5.9E-15 100.7 16.0 152 79-234 2-160 (568)
104 4ga2_A E3 SUMO-protein ligase 99.3 2.9E-11 9.8E-16 86.3 9.2 126 173-301 3-132 (150)
105 2r5s_A Uncharacterized protein 99.2 5.1E-11 1.7E-15 87.4 10.4 56 105-160 10-68 (176)
106 2pzi_A Probable serine/threoni 99.2 2.6E-10 8.9E-15 101.5 16.7 167 79-250 404-583 (681)
107 2qfc_A PLCR protein; TPR, HTH, 99.2 1.4E-09 4.9E-14 86.6 19.2 164 133-296 76-264 (293)
108 3urz_A Uncharacterized protein 99.2 6.3E-10 2.2E-14 83.9 16.2 189 25-242 3-197 (208)
109 2r5s_A Uncharacterized protein 99.2 2.9E-10 9.8E-15 83.4 13.2 148 4-158 15-170 (176)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.5E-09 5.3E-14 81.9 16.7 132 103-235 8-154 (213)
111 3u3w_A Transcriptional activat 99.2 3.3E-09 1.1E-13 84.5 18.9 161 137-297 80-265 (293)
112 3qou_A Protein YBBN; thioredox 99.2 7.9E-10 2.7E-14 87.8 15.0 162 98-263 114-283 (287)
113 2c2l_A CHIP, carboxy terminus 99.2 4.1E-10 1.4E-14 89.1 12.6 192 100-298 3-199 (281)
114 3dra_A Protein farnesyltransfe 99.2 2.3E-08 8E-13 79.4 22.4 211 83-297 50-286 (306)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 5.6E-09 1.9E-13 83.7 19.2 127 102-229 77-221 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.2E-09 7.6E-14 81.0 16.0 131 132-268 6-154 (213)
117 3dra_A Protein farnesyltransfe 99.1 6.2E-08 2.1E-12 77.0 24.3 234 36-278 42-302 (306)
118 2qfc_A PLCR protein; TPR, HTH, 99.1 3.1E-09 1.1E-13 84.6 16.9 163 101-263 75-265 (293)
119 4gco_A Protein STI-1; structur 99.1 1E-09 3.5E-14 75.6 11.6 109 168-278 14-124 (126)
120 1a17_A Serine/threonine protei 99.1 2.4E-09 8.3E-14 77.2 14.2 128 168-297 14-145 (166)
121 3gyz_A Chaperone protein IPGC; 99.1 3.9E-10 1.3E-14 80.2 9.5 97 203-299 36-134 (151)
122 3u3w_A Transcriptional activat 99.1 1.8E-08 6E-13 80.2 20.1 160 104-263 78-265 (293)
123 1p5q_A FKBP52, FK506-binding p 99.1 1.7E-09 5.8E-14 87.9 13.2 126 168-296 148-292 (336)
124 4gco_A Protein STI-1; structur 99.1 1.6E-09 5.6E-14 74.6 10.9 103 199-301 8-113 (126)
125 4e6h_A MRNA 3'-END-processing 99.1 1.4E-08 4.9E-13 89.4 19.2 216 85-302 328-574 (679)
126 2vgx_A Chaperone SYCD; alterna 99.1 6.1E-10 2.1E-14 79.1 8.4 101 167-269 21-123 (148)
127 4f3v_A ESX-1 secretion system 99.1 5.5E-09 1.9E-13 81.3 14.1 138 135-277 105-249 (282)
128 1na0_A Designed protein CTPR3; 99.0 4.6E-09 1.6E-13 71.6 12.0 114 167-282 9-124 (125)
129 2lni_A Stress-induced-phosphop 99.0 4.1E-09 1.4E-13 72.9 11.7 116 166-283 15-132 (133)
130 4e6h_A MRNA 3'-END-processing 99.0 5.7E-08 2E-12 85.6 21.5 242 27-279 303-584 (679)
131 2vyi_A SGTA protein; chaperone 99.0 4.6E-09 1.6E-13 72.3 11.5 117 167-285 12-130 (131)
132 2e2e_A Formate-dependent nitri 99.0 1.3E-09 4.4E-14 79.9 8.6 126 142-270 20-150 (177)
133 4f3v_A ESX-1 secretion system 99.0 3E-09 1E-13 82.8 10.7 129 104-234 105-240 (282)
134 3gw4_A Uncharacterized protein 99.0 1.6E-08 5.4E-13 75.6 14.4 49 6-54 3-54 (203)
135 2fbn_A 70 kDa peptidylprolyl i 99.0 5.7E-10 1.9E-14 83.5 6.3 171 108-299 11-187 (198)
136 3gyz_A Chaperone protein IPGC; 99.0 1.9E-08 6.6E-13 71.4 13.4 104 164-269 32-138 (151)
137 2kck_A TPR repeat; tetratricop 99.0 5.6E-09 1.9E-13 69.8 10.1 101 202-302 5-110 (112)
138 3gw4_A Uncharacterized protein 99.0 2.7E-08 9.3E-13 74.2 14.3 149 79-228 5-172 (203)
139 2xcb_A PCRH, regulatory protei 99.0 3.5E-09 1.2E-13 74.6 8.7 100 168-269 19-120 (142)
140 1a17_A Serine/threonine protei 98.9 3.4E-08 1.2E-12 71.1 14.0 90 104-194 16-108 (166)
141 3upv_A Heat shock protein STI1 98.9 1E-08 3.4E-13 70.5 10.3 96 168-265 5-102 (126)
142 1hxi_A PEX5, peroxisome target 98.9 9.2E-09 3.1E-13 70.2 9.9 97 204-300 18-116 (121)
143 2vgx_A Chaperone SYCD; alterna 98.9 3.9E-09 1.3E-13 74.9 8.2 96 204-299 22-119 (148)
144 2uy1_A Cleavage stimulation fa 98.9 1.9E-06 6.4E-11 73.6 26.0 86 9-95 28-118 (493)
145 3sz7_A HSC70 cochaperone (SGT) 98.9 1.6E-08 5.3E-13 73.1 10.6 108 166-275 10-119 (164)
146 1elw_A TPR1-domain of HOP; HOP 98.9 5E-08 1.7E-12 65.7 12.4 109 168-278 5-115 (118)
147 2e2e_A Formate-dependent nitri 98.9 1E-08 3.5E-13 75.0 9.4 122 111-235 20-148 (177)
148 3q7a_A Farnesyltransferase alp 98.9 2.5E-06 8.6E-11 68.6 23.7 240 28-277 56-345 (349)
149 3q49_B STIP1 homology and U bo 98.9 2.1E-08 7.1E-13 69.9 10.4 100 166-267 8-109 (137)
150 2lni_A Stress-induced-phosphop 98.9 1.3E-08 4.3E-13 70.4 9.0 101 200-300 13-115 (133)
151 1na0_A Designed protein CTPR3; 98.9 3E-08 1E-12 67.5 10.8 98 203-300 9-108 (125)
152 3dss_A Geranylgeranyl transfer 98.9 4E-06 1.4E-10 67.1 24.2 247 25-280 25-320 (331)
153 3dss_A Geranylgeranyl transfer 98.9 2.2E-06 7.5E-11 68.6 22.7 234 63-300 26-306 (331)
154 2dba_A Smooth muscle cell asso 98.9 8.3E-08 2.8E-12 67.6 13.2 111 166-279 27-143 (148)
155 1p5q_A FKBP52, FK506-binding p 98.9 9.9E-09 3.4E-13 83.4 9.2 137 82-222 129-283 (336)
156 2xcb_A PCRH, regulatory protei 98.9 3.9E-08 1.3E-12 69.1 11.2 96 204-299 19-116 (142)
157 3upv_A Heat shock protein STI1 98.8 4.3E-08 1.5E-12 67.3 11.0 96 204-299 5-102 (126)
158 2dba_A Smooth muscle cell asso 98.8 5.3E-08 1.8E-12 68.6 11.7 100 202-301 27-131 (148)
159 1elw_A TPR1-domain of HOP; HOP 98.8 3.8E-08 1.3E-12 66.3 10.5 99 202-300 3-103 (118)
160 2xev_A YBGF; tetratricopeptide 98.8 4.4E-08 1.5E-12 67.4 10.3 101 172-272 7-113 (129)
161 4gcn_A Protein STI-1; structur 98.8 2E-08 6.8E-13 69.2 8.3 92 206-297 11-111 (127)
162 3sz7_A HSC70 cochaperone (SGT) 98.8 6.9E-08 2.4E-12 69.6 11.3 102 131-235 10-112 (164)
163 2vyi_A SGTA protein; chaperone 98.8 5.9E-08 2E-12 66.6 10.3 100 201-300 10-111 (131)
164 2c2l_A CHIP, carboxy terminus 98.8 5E-08 1.7E-12 77.1 10.9 188 25-229 3-196 (281)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 4.5E-08 1.5E-12 82.9 11.3 128 169-296 270-413 (457)
166 4b4t_Q 26S proteasome regulato 98.8 2.6E-07 8.8E-12 77.6 15.8 189 75-263 13-244 (434)
167 3q49_B STIP1 homology and U bo 98.8 8.4E-08 2.9E-12 66.7 10.8 96 203-298 9-106 (137)
168 4b4t_Q 26S proteasome regulato 98.7 1.1E-06 3.8E-11 73.7 18.6 194 32-229 10-242 (434)
169 4gcn_A Protein STI-1; structur 98.7 1.1E-07 3.8E-12 65.4 10.2 57 137-194 13-69 (127)
170 3n71_A Histone lysine methyltr 98.7 1.8E-07 6.2E-12 79.3 12.6 124 176-299 318-465 (490)
171 2if4_A ATFKBP42; FKBP-like, al 98.7 2.4E-08 8.2E-13 81.1 6.8 152 131-302 178-332 (338)
172 2hr2_A Hypothetical protein; a 98.7 8.8E-08 3E-12 67.6 8.7 62 237-298 59-131 (159)
173 1elr_A TPR2A-domain of HOP; HO 98.7 7.8E-08 2.7E-12 66.0 8.5 42 236-278 80-121 (131)
174 3q7a_A Farnesyltransferase alp 98.7 3.7E-06 1.3E-10 67.6 19.2 215 79-297 67-330 (349)
175 3ro3_A PINS homolog, G-protein 98.7 6.5E-08 2.2E-12 69.1 8.3 130 169-298 11-158 (164)
176 1wao_1 Serine/threonine protei 98.7 5.4E-08 1.9E-12 82.8 9.0 116 176-293 15-134 (477)
177 1elr_A TPR2A-domain of HOP; HO 98.7 7.1E-08 2.4E-12 66.2 8.0 98 203-300 4-110 (131)
178 1ihg_A Cyclophilin 40; ppiase 98.7 3E-07 1E-11 75.6 12.6 90 202-291 272-363 (370)
179 2xev_A YBGF; tetratricopeptide 98.7 2.7E-07 9.2E-12 63.3 10.7 88 210-297 9-104 (129)
180 2fbn_A 70 kDa peptidylprolyl i 98.6 4.7E-08 1.6E-12 72.9 6.5 97 204-300 39-153 (198)
181 2kck_A TPR repeat; tetratricop 98.6 1.6E-07 5.5E-12 62.5 8.6 94 172-267 11-109 (112)
182 2uy1_A Cleavage stimulation fa 98.6 7.7E-06 2.6E-10 69.8 20.8 263 7-295 6-380 (493)
183 3rkv_A Putative peptidylprolyl 98.6 1.2E-07 4.3E-12 68.1 8.2 117 166-282 10-145 (162)
184 3k9i_A BH0479 protein; putativ 98.6 2.6E-08 9.1E-13 67.4 4.4 92 179-271 2-97 (117)
185 3rkv_A Putative peptidylprolyl 98.6 3.3E-07 1.1E-11 65.8 10.1 104 131-236 10-131 (162)
186 3ro3_A PINS homolog, G-protein 98.6 1E-06 3.5E-11 62.7 12.2 127 102-228 10-154 (164)
187 3k9i_A BH0479 protein; putativ 98.6 8.1E-08 2.8E-12 65.0 5.9 83 145-229 3-87 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.6 3.6E-07 1.2E-11 74.2 10.3 153 100-269 178-333 (338)
189 1hxi_A PEX5, peroxisome target 98.6 3.1E-07 1.1E-11 62.5 8.2 94 173-268 23-118 (121)
190 1wao_1 Serine/threonine protei 98.5 1.7E-07 5.7E-12 79.9 7.9 121 103-227 8-134 (477)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 4.4E-07 1.5E-11 76.9 10.2 137 82-223 250-405 (457)
192 2hr2_A Hypothetical protein; a 98.5 2.4E-07 8.2E-12 65.4 6.1 102 170-274 14-141 (159)
193 2l6j_A TPR repeat-containing p 98.5 8E-08 2.7E-12 64.1 3.2 93 202-294 3-103 (111)
194 1ihg_A Cyclophilin 40; ppiase 98.4 5.4E-06 1.9E-10 68.1 13.2 118 102-223 224-361 (370)
195 1dce_A Protein (RAB geranylger 98.4 3.6E-05 1.2E-09 66.8 18.7 168 117-287 45-244 (567)
196 3n71_A Histone lysine methyltr 98.4 5.3E-06 1.8E-10 70.4 12.5 119 77-195 320-463 (490)
197 1na3_A Designed protein CTPR2; 98.3 2.8E-06 9.4E-11 54.1 8.0 80 203-282 9-90 (91)
198 3ma5_A Tetratricopeptide repea 98.3 3.6E-06 1.2E-10 55.0 8.0 60 237-296 9-68 (100)
199 2l6j_A TPR repeat-containing p 98.2 2.4E-06 8.1E-11 56.7 6.2 94 132-229 4-104 (111)
200 2kat_A Uncharacterized protein 98.2 6.9E-06 2.4E-10 55.0 8.6 82 184-267 2-85 (115)
201 1dce_A Protein (RAB geranylger 98.2 7.2E-05 2.5E-09 64.9 16.0 155 145-302 42-225 (567)
202 1zu2_A Mitochondrial import re 98.2 3E-06 1E-10 59.6 6.0 50 251-300 62-122 (158)
203 1klx_A Cysteine rich protein B 98.1 4.9E-05 1.7E-09 52.8 11.6 108 81-196 10-126 (138)
204 3bee_A Putative YFRE protein; 98.1 1.9E-05 6.6E-10 50.6 8.4 69 233-301 4-75 (93)
205 2kat_A Uncharacterized protein 98.1 1.4E-05 4.8E-10 53.5 8.1 77 150-229 3-79 (115)
206 1klx_A Cysteine rich protein B 98.1 2.7E-05 9.2E-10 54.1 9.8 111 146-265 9-127 (138)
207 1zu2_A Mitochondrial import re 98.1 1.2E-05 4.2E-10 56.5 7.4 125 144-300 14-149 (158)
208 2kc7_A BFR218_protein; tetratr 98.0 1.2E-05 4.1E-10 52.1 6.2 82 209-298 6-90 (99)
209 1na3_A Designed protein CTPR2; 98.0 3.3E-05 1.1E-09 48.9 7.5 66 235-300 9-74 (91)
210 3qww_A SET and MYND domain-con 97.9 2.8E-05 9.5E-10 64.9 8.3 83 215-297 310-410 (433)
211 3qww_A SET and MYND domain-con 97.9 2.4E-05 8.1E-10 65.4 7.8 92 179-270 310-422 (433)
212 3ma5_A Tetratricopeptide repea 97.9 4.7E-05 1.6E-09 49.5 7.3 61 133-194 8-68 (100)
213 3qwp_A SET and MYND domain-con 97.9 9.7E-05 3.3E-09 61.7 10.7 97 174-270 294-411 (429)
214 3qwp_A SET and MYND domain-con 97.8 8E-05 2.7E-09 62.3 9.0 88 210-297 294-399 (429)
215 2kc7_A BFR218_protein; tetratr 97.8 0.0001 3.5E-09 47.5 7.6 61 241-301 6-67 (99)
216 3ly7_A Transcriptional activat 97.7 0.006 2.1E-07 49.2 17.4 141 130-273 192-347 (372)
217 3ly7_A Transcriptional activat 97.6 0.0015 5.1E-08 52.7 13.3 69 166-237 276-345 (372)
218 3mkq_A Coatomer beta'-subunit; 97.4 0.022 7.4E-07 51.7 19.4 104 109-230 660-763 (814)
219 3u64_A Protein TP_0956; tetrat 97.4 0.00074 2.5E-08 52.3 8.0 53 249-301 218-272 (301)
220 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0016 5.3E-08 42.5 8.1 71 205-275 7-86 (104)
221 1pc2_A Mitochondria fission pr 97.2 0.0011 3.9E-08 46.1 7.0 71 201-271 30-107 (152)
222 3mkq_A Coatomer beta'-subunit; 97.2 0.0043 1.5E-07 56.3 12.8 28 166-193 680-707 (814)
223 1wy6_A Hypothetical protein ST 97.1 0.029 9.8E-07 37.9 15.8 141 142-301 17-157 (172)
224 1pc2_A Mitochondria fission pr 97.1 0.0028 9.5E-08 44.1 7.6 81 221-301 16-103 (152)
225 1qsa_A Protein (soluble lytic 97.0 0.14 4.9E-06 44.7 23.2 114 146-263 228-347 (618)
226 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0044 1.5E-07 40.3 8.2 67 234-300 4-77 (104)
227 3bee_A Putative YFRE protein; 96.9 0.005 1.7E-07 39.1 7.2 66 202-267 5-75 (93)
228 3mkq_B Coatomer subunit alpha; 96.9 0.046 1.6E-06 39.0 12.6 104 109-230 13-116 (177)
229 1wy6_A Hypothetical protein ST 96.7 0.075 2.6E-06 35.9 14.0 84 114-200 74-157 (172)
230 3mkq_B Coatomer subunit alpha; 96.6 0.1 3.5E-06 37.2 14.9 128 4-158 14-141 (177)
231 4ady_A RPN2, 26S proteasome re 96.6 0.39 1.3E-05 43.9 19.5 222 35-263 383-622 (963)
232 3u64_A Protein TP_0956; tetrat 96.5 0.084 2.9E-06 41.0 12.9 58 169-229 201-266 (301)
233 1nzn_A CGI-135 protein, fissio 96.5 0.03 1E-06 37.5 9.2 90 181-272 15-111 (126)
234 4h7y_A Dual specificity protei 96.5 0.019 6.4E-07 39.5 8.2 110 166-278 12-137 (161)
235 4h7y_A Dual specificity protei 96.5 0.1 3.6E-06 35.9 12.0 100 23-126 10-119 (161)
236 4gns_B Protein CSD3, chitin bi 96.5 0.048 1.6E-06 48.6 12.9 125 169-296 250-398 (754)
237 3lvg_A Clathrin heavy chain 1; 95.9 5.7E-07 1.9E-11 74.0 -19.4 242 25-294 53-316 (624)
238 4b4t_P 26S proteasome regulato 95.8 0.69 2.4E-05 38.7 16.8 185 9-196 30-247 (445)
239 2ff4_A Probable regulatory pro 95.8 0.039 1.4E-06 45.4 8.3 67 239-305 175-246 (388)
240 1nzn_A CGI-135 protein, fissio 95.7 0.084 2.9E-06 35.3 8.0 87 146-235 15-107 (126)
241 4b4t_P 26S proteasome regulato 95.6 0.84 2.9E-05 38.2 16.8 90 207-296 141-245 (445)
242 4ady_A RPN2, 26S proteasome re 95.1 2 6.8E-05 39.5 21.0 253 5-263 384-657 (963)
243 3lvg_A Clathrin heavy chain 1; 95.1 7.4E-06 2.5E-10 67.6 -15.7 232 4-262 63-318 (624)
244 3ffl_A Anaphase-promoting comp 94.8 0.13 4.4E-06 36.2 7.1 110 107-230 26-149 (167)
245 4gns_B Protein CSD3, chitin bi 94.8 1.1 3.6E-05 40.2 14.6 111 82-194 265-398 (754)
246 1v54_E Cytochrome C oxidase po 94.6 0.48 1.7E-05 30.0 9.2 68 142-211 19-87 (109)
247 3lpz_A GET4 (YOR164C homolog); 94.6 1.4 4.7E-05 35.1 21.4 169 102-297 36-215 (336)
248 2ff4_A Probable regulatory pro 94.6 0.67 2.3E-05 38.1 12.2 54 139-193 178-231 (388)
249 1y8m_A FIS1; mitochondria, unk 93.8 0.91 3.1E-05 31.0 9.3 72 200-271 36-113 (144)
250 4fhn_B Nucleoporin NUP120; pro 93.7 1.2 4.1E-05 42.4 13.4 122 172-299 817-968 (1139)
251 2y69_E Cytochrome C oxidase su 93.4 1.2 4E-05 30.1 9.2 79 142-231 62-141 (152)
252 4fhn_B Nucleoporin NUP120; pro 93.1 2.2 7.5E-05 40.6 14.2 161 101-264 842-1050(1139)
253 3txn_A 26S proteasome regulato 93.0 3.2 0.00011 34.0 20.9 166 27-195 20-209 (394)
254 2uwj_G Type III export protein 92.9 1.1 3.7E-05 28.3 9.6 88 79-171 19-106 (115)
255 3o48_A Mitochondria fission 1 92.8 0.44 1.5E-05 32.1 6.5 72 200-271 37-114 (134)
256 2p58_C Putative type III secre 92.7 1.2 4E-05 28.2 9.9 88 79-171 20-107 (116)
257 3ffl_A Anaphase-promoting comp 92.7 0.94 3.2E-05 31.8 8.3 115 170-296 23-149 (167)
258 1v54_E Cytochrome C oxidase po 92.6 1.2 4.2E-05 28.2 8.5 60 182-242 25-86 (109)
259 1zbp_A Hypothetical protein VP 92.1 3.2 0.00011 31.8 11.6 119 140-269 5-134 (273)
260 2p58_C Putative type III secre 91.3 1 3.5E-05 28.5 6.4 84 9-105 21-107 (116)
261 2y69_E Cytochrome C oxidase su 90.8 2.7 9.1E-05 28.4 8.5 46 183-229 69-114 (152)
262 3o48_A Mitochondria fission 1 90.4 2.8 9.7E-05 28.2 9.4 72 164-236 37-112 (134)
263 3esl_A Checkpoint serine/threo 90.3 4 0.00014 29.7 9.8 50 216-265 92-145 (202)
264 2uwj_G Type III export protein 89.8 0.92 3.2E-05 28.6 5.2 84 9-105 20-106 (115)
265 4b4t_R RPN7, 26S proteasome re 89.4 5.5 0.00019 33.1 11.5 97 28-127 133-234 (429)
266 2wpv_A GET4, UPF0363 protein Y 88.9 7.3 0.00025 30.7 20.6 189 82-297 13-216 (312)
267 1zbp_A Hypothetical protein VP 88.7 1.2 4.3E-05 34.0 6.4 59 211-269 5-65 (273)
268 4b4t_R RPN7, 26S proteasome re 88.4 2.9 0.0001 34.8 9.1 95 169-263 133-236 (429)
269 2nsz_A Programmed cell death p 88.1 4.4 0.00015 27.2 9.0 65 105-169 11-80 (129)
270 2ion_A PDCD4, programmed cell 87.2 5.7 0.00019 27.5 9.0 66 104-169 12-82 (152)
271 1y8m_A FIS1; mitochondria, unk 86.3 6.1 0.00021 26.9 10.2 71 164-235 36-110 (144)
272 2wvi_A Mitotic checkpoint seri 85.2 7.6 0.00026 27.3 8.4 30 236-265 97-126 (164)
273 4a1g_A Mitotic checkpoint seri 84.7 7.8 0.00027 26.8 8.9 51 252-302 82-134 (152)
274 3lpz_A GET4 (YOR164C homolog); 83.7 15 0.00052 29.2 17.2 130 28-177 37-177 (336)
275 4aez_C MAD3, mitotic spindle c 82.8 9 0.00031 28.4 8.3 30 236-265 151-180 (223)
276 4b4t_S RPN3, 26S proteasome re 82.1 23 0.00078 30.2 14.8 62 100-161 230-299 (523)
277 3txn_A 26S proteasome regulato 81.9 20 0.00068 29.4 26.1 283 2-300 26-345 (394)
278 2wpv_A GET4, UPF0363 protein Y 81.3 18 0.00062 28.5 19.4 26 100-125 133-158 (312)
279 4gq2_M Nucleoporin NUP120; bet 77.6 25 0.00086 32.7 11.3 51 173-229 816-866 (950)
280 4a1g_A Mitotic checkpoint seri 75.7 17 0.00058 25.1 8.6 48 120-167 84-136 (152)
281 3ltm_A Alpha-REP4; protein eng 74.8 21 0.00072 25.7 18.3 187 9-217 16-202 (211)
282 2qx5_A Nucleoporin NIC96; mRNA 74.7 44 0.0015 29.6 11.5 36 2-37 159-197 (661)
283 2zu6_B Programmed cell death p 74.6 29 0.001 27.3 12.2 64 238-301 169-234 (307)
284 3ltm_A Alpha-REP4; protein eng 73.5 23 0.00078 25.6 19.8 183 43-247 18-200 (211)
285 1qsa_A Protein (soluble lytic 71.4 53 0.0018 28.8 24.8 50 144-194 297-346 (618)
286 3eiq_C Programmed cell death p 70.9 38 0.0013 27.3 9.4 66 104-169 220-290 (358)
287 2zu6_B Programmed cell death p 70.5 37 0.0013 26.7 9.6 67 104-170 169-240 (307)
288 2d2s_A Exocyst complex compone 70.0 19 0.00066 27.0 7.2 23 205-227 93-115 (235)
289 4aez_C MAD3, mitotic spindle c 69.3 30 0.001 25.7 7.8 49 119-167 132-185 (223)
290 3kea_A K1L; tropism, ANK repea 68.5 32 0.0011 26.3 8.7 14 247-260 170-183 (285)
291 2b7e_A PRE-mRNA processing pro 68.0 5.5 0.00019 22.4 2.9 29 184-213 3-31 (59)
292 2wvi_A Mitotic checkpoint seri 67.2 30 0.001 24.3 7.9 35 133-167 97-131 (164)
293 1wdy_A 2-5A-dependent ribonucl 67.1 38 0.0013 25.5 11.3 143 107-259 75-240 (285)
294 4b4t_S RPN3, 26S proteasome re 66.8 18 0.00062 30.8 7.0 63 167-229 231-296 (523)
295 2d2s_A Exocyst complex compone 66.7 38 0.0013 25.4 8.3 90 173-262 24-118 (235)
296 2nsz_A Programmed cell death p 65.9 27 0.00091 23.3 6.9 95 205-300 9-113 (129)
297 3esl_A Checkpoint serine/threo 65.9 36 0.0012 24.8 10.0 56 145-201 92-148 (202)
298 3ltj_A Alpharep-4; protein eng 65.3 34 0.0012 24.3 19.2 162 15-194 17-178 (201)
299 3bu8_A Telomeric repeat-bindin 62.9 26 0.00089 25.8 6.2 18 212-229 123-140 (235)
300 3kae_A CDC27, possible protein 62.7 39 0.0013 24.0 15.1 24 169-192 116-139 (242)
301 2ion_A PDCD4, programmed cell 61.9 36 0.0012 23.4 6.9 95 205-300 11-115 (152)
302 2qx5_A Nucleoporin NIC96; mRNA 58.2 1E+02 0.0034 27.4 17.2 219 4-235 303-570 (661)
303 3ygs_P Procaspase 9; apoptosis 57.9 15 0.00051 23.1 4.0 34 10-43 52-85 (97)
304 3ygs_P Procaspase 9; apoptosis 54.2 23 0.0008 22.1 4.4 39 115-153 51-89 (97)
305 3bqo_A Telomeric repeat-bindin 53.5 57 0.0019 23.7 6.6 46 11-56 94-147 (211)
306 3ltj_A Alpharep-4; protein eng 53.5 57 0.002 23.1 19.0 145 3-161 36-180 (201)
307 2dod_A Transcription elongatio 53.2 18 0.00062 21.9 3.6 30 183-213 16-45 (82)
308 1ug3_A EIF4GI, eukaryotic prot 53.0 85 0.0029 25.0 10.3 125 105-229 15-167 (339)
309 1wgl_A TOLL-interacting protei 52.8 19 0.00066 20.1 3.4 48 255-304 10-58 (59)
310 2fe3_A Peroxide operon regulat 51.0 38 0.0013 23.0 5.5 60 158-219 13-72 (145)
311 2xig_A Ferric uptake regulatio 50.3 57 0.0019 22.3 6.3 41 176-217 35-75 (150)
312 3mv2_A Coatomer subunit alpha; 50.3 93 0.0032 24.6 10.3 57 227-297 197-255 (325)
313 1wdy_A 2-5A-dependent ribonucl 50.3 58 0.002 24.4 7.2 202 79-302 15-246 (285)
314 3hra_A Ankyrin repeat family p 49.8 37 0.0013 23.9 5.7 19 109-127 10-28 (201)
315 4ets_A Ferric uptake regulatio 49.3 43 0.0015 23.3 5.6 36 159-195 25-60 (162)
316 3aji_A 26S proteasome non-ATPa 47.5 77 0.0026 22.9 7.9 19 108-126 44-62 (231)
317 1oyz_A Hypothetical protein YI 46.9 91 0.0031 23.5 23.6 222 22-263 33-262 (280)
318 1uzc_A Hypothetical protein FL 46.3 24 0.00084 20.6 3.3 32 182-214 13-44 (71)
319 1oai_A Nuclear RNA export fact 46.3 13 0.00043 20.9 2.0 24 39-63 33-56 (59)
320 2p1h_A APAF-1, apoptotic prote 42.9 56 0.0019 20.1 4.9 17 39-55 49-65 (94)
321 1q02_A Sequestosome 1; helical 42.4 40 0.0014 18.2 4.4 39 85-125 10-48 (52)
322 3eu9_A Huntingtin-interacting 42.2 69 0.0023 23.2 6.3 178 107-297 45-235 (240)
323 3ljn_A Hypothetical protein; a 41.6 1.3E+02 0.0044 23.8 9.2 56 108-164 57-113 (364)
324 3i5p_A Nucleoporin NUP170; hel 41.6 1.7E+02 0.0057 25.1 11.9 33 266-298 214-246 (525)
325 3re2_A Predicted protein; meni 41.1 1.4E+02 0.0049 24.1 8.1 79 204-287 297-393 (472)
326 3b7b_A Euchromatic histone-lys 41.0 62 0.0021 23.5 5.9 176 107-297 47-235 (237)
327 3mwm_A ZUR, putative metal upt 40.8 34 0.0012 23.0 3.9 44 138-181 19-62 (139)
328 2o03_A Probable zinc uptake re 39.8 39 0.0013 22.4 4.0 45 138-182 16-60 (131)
329 2f6m_A Suppressor protein STP2 39.7 53 0.0018 18.8 4.7 51 236-286 3-53 (65)
330 1ya0_A SMG-7 transcript varian 39.2 1E+02 0.0035 26.1 7.3 72 209-280 158-231 (497)
331 4gq2_M Nucleoporin NUP120; bet 39.1 2.4E+02 0.0084 26.3 12.5 109 107-217 816-950 (950)
332 2ko4_A Mediator of RNA polymer 38.6 62 0.0021 19.3 4.3 37 224-260 24-61 (81)
333 1n11_A Ankyrin; clathrin, BAND 37.3 1.5E+02 0.005 24.2 8.1 49 3-51 19-69 (437)
334 4fke_A Aminopeptidase N; zinc 37.2 2.6E+02 0.0088 26.0 14.7 24 172-195 763-786 (909)
335 1k1a_A B-cell lymphoma 3-encod 36.8 1.2E+02 0.004 22.0 6.8 16 245-260 157-172 (241)
336 3bqo_A Telomeric repeat-bindin 36.4 54 0.0019 23.8 4.3 46 183-229 94-143 (211)
337 2ijq_A Hypothetical protein; s 36.2 1.1E+02 0.0037 21.3 7.6 52 144-195 44-103 (161)
338 1k1a_A B-cell lymphoma 3-encod 35.8 1.1E+02 0.0037 22.1 6.5 17 109-125 14-30 (241)
339 1mzb_A Ferric uptake regulatio 35.4 52 0.0018 22.0 4.2 59 158-218 9-68 (136)
340 2qq8_A TBC1 domain family memb 34.0 90 0.0031 24.7 6.0 38 158-195 219-256 (334)
341 4gq4_A Menin; tumor suppressor 33.9 2E+02 0.0069 23.8 10.0 58 14-71 283-351 (489)
342 3kea_A K1L; tropism, ANK repea 33.7 1.5E+02 0.0053 22.4 7.3 235 6-267 7-250 (285)
343 3bu8_A Telomeric repeat-bindin 33.4 1.4E+02 0.005 22.0 8.3 21 175-195 122-142 (235)
344 2p22_A Suppressor protein STP2 32.9 88 0.003 22.1 4.9 57 232-288 108-164 (174)
345 2rg8_A Programmed cell death p 32.5 1.3E+02 0.0043 21.0 7.2 26 29-54 13-38 (165)
346 3eyy_A Putative iron uptake re 31.1 1.2E+02 0.0042 20.4 5.6 57 158-217 10-66 (145)
347 3jxi_A Vanilloid receptor-rela 31.0 72 0.0025 23.7 4.8 17 243-259 145-161 (260)
348 1ya0_A SMG-7 transcript varian 31.0 2.1E+02 0.007 24.4 7.8 72 174-247 159-232 (497)
349 3eyy_A Putative iron uptake re 30.5 65 0.0022 21.8 4.0 44 138-182 24-67 (145)
350 3t8k_A Uncharacterized protein 30.4 95 0.0032 21.9 5.1 51 5-56 13-65 (186)
351 2rg8_A Programmed cell death p 30.4 1.4E+02 0.0047 20.8 8.0 55 105-159 14-72 (165)
352 1oyz_A Hypothetical protein YI 30.3 1.7E+02 0.0059 21.9 21.4 180 22-218 64-250 (280)
353 2w57_A Ferric uptake regulatio 30.1 91 0.0031 21.2 4.7 60 158-219 8-68 (150)
354 3m0z_A Putative aldolase; MCSG 29.7 92 0.0032 23.2 4.7 79 219-297 147-246 (249)
355 3r88_A Anthranilate phosphorib 29.0 2.3E+02 0.0079 23.0 8.2 68 234-301 22-91 (377)
356 2pnn_A Transient receptor pote 28.9 1.1E+02 0.0036 23.0 5.5 19 108-126 17-35 (273)
357 2crb_A Nuclear receptor bindin 28.9 1.1E+02 0.0036 19.1 4.1 27 26-52 15-41 (97)
358 3u84_A Menin; MLL, JUND, ledgf 28.4 2.6E+02 0.0087 23.2 7.9 79 204-287 319-425 (550)
359 3eiq_C Programmed cell death p 28.0 2.4E+02 0.0081 22.7 17.9 70 105-175 58-131 (358)
360 2cos_A Serine/threonine protei 28.0 79 0.0027 17.2 4.1 43 84-131 8-52 (54)
361 3hra_A Ankyrin repeat family p 27.8 1.1E+02 0.0039 21.3 5.3 14 37-50 13-26 (201)
362 3eu9_A Huntingtin-interacting 27.5 1.6E+02 0.0054 21.1 6.2 108 110-228 15-131 (240)
363 3f3f_C Nucleoporin NUP85; stru 27.4 3E+02 0.01 23.8 8.1 72 181-254 495-568 (570)
364 2p1h_A APAF-1, apoptotic prote 27.2 1.1E+02 0.0038 18.6 6.6 37 114-150 49-85 (94)
365 3e3v_A Regulatory protein RECX 26.8 1.7E+02 0.0058 20.6 10.0 28 206-233 139-167 (177)
366 2keb_A DNA polymerase subunit 26.7 1.2E+02 0.0042 19.0 6.6 59 151-209 28-88 (101)
367 2ijq_A Hypothetical protein; s 26.4 1.7E+02 0.0057 20.4 8.0 64 28-94 35-103 (161)
368 2xig_A Ferric uptake regulatio 26.3 1.5E+02 0.0053 20.0 6.9 41 210-250 33-76 (150)
369 4ets_A Ferric uptake regulatio 26.3 1.6E+02 0.0056 20.3 6.1 70 183-253 13-87 (162)
370 1n11_A Ankyrin; clathrin, BAND 25.6 2.7E+02 0.0091 22.6 8.7 48 3-51 52-102 (437)
371 2cfu_A SDSA1; SDS-hydrolase, l 25.6 1.9E+02 0.0065 25.6 7.0 63 220-285 437-499 (658)
372 3rjo_A Endoplasmic reticulum a 24.5 2.9E+02 0.0099 22.6 13.1 32 131-162 266-297 (419)
373 3ctd_A Putative ATPase, AAA fa 24.5 1.7E+02 0.0058 21.5 5.3 51 65-115 34-84 (213)
374 2dzn_A Probable 26S proteasome 24.4 1.2E+02 0.0042 21.7 5.0 193 33-236 6-204 (228)
375 2o03_A Probable zinc uptake re 23.8 1.6E+02 0.0055 19.3 5.1 45 208-252 15-62 (131)
376 2fe3_A Peroxide operon regulat 23.7 1.7E+02 0.0058 19.6 7.5 52 198-250 17-71 (145)
377 3qye_A TBC1 domain family memb 23.5 2.7E+02 0.0092 21.8 8.8 32 198-229 218-249 (331)
378 1q2z_A ATP-dependent DNA helic 23.4 96 0.0033 20.3 3.6 52 250-301 42-95 (120)
379 3l6a_A Eukaryotic translation 23.2 2.9E+02 0.01 22.2 12.2 123 30-160 16-150 (364)
380 2fu4_A Ferric uptake regulatio 23.0 1.2E+02 0.0042 17.7 6.2 58 158-217 8-66 (83)
381 3us6_A Histidine-containing ph 22.9 1.9E+02 0.0064 19.8 9.2 43 169-215 9-51 (153)
382 3m6y_A 4-hydroxy-2-oxoglutarat 22.6 96 0.0033 23.4 3.7 79 219-297 170-269 (275)
383 2yru_A Steroid receptor RNA ac 22.1 1.7E+02 0.0058 19.1 5.7 42 154-195 48-89 (118)
384 2etb_A Transient receptor pote 21.6 2.3E+02 0.008 20.7 6.2 22 143-164 10-31 (256)
385 3e3v_A Regulatory protein RECX 21.4 2.2E+02 0.0075 20.0 7.5 110 148-261 49-163 (177)
386 1bd8_A P19INK4D CDK4/6 inhibit 21.1 1.8E+02 0.0063 19.0 5.1 111 139-260 6-123 (156)
387 3t5v_B Nuclear mRNA export pro 20.6 2.4E+02 0.0084 23.6 6.3 23 207-229 180-202 (455)
388 4hbd_A KN motif and ankyrin re 20.6 79 0.0027 24.0 3.3 14 112-125 119-132 (276)
389 4fke_A Aminopeptidase N; zinc 20.6 5.1E+02 0.018 24.0 18.4 24 206-229 761-784 (909)
390 3lxu_X Tripeptidyl-peptidase 2 20.4 2.8E+02 0.0096 27.1 7.2 35 79-115 1297-1331(1354)
391 2ve8_A FTSK, DNA translocase F 20.3 1.1E+02 0.0039 17.9 3.1 31 274-305 28-58 (73)
392 3jxi_A Vanilloid receptor-rela 20.2 68 0.0023 23.8 2.8 24 33-56 9-32 (260)
393 1ug3_A EIF4GI, eukaryotic prot 20.1 3.3E+02 0.011 21.6 12.6 25 29-53 14-38 (339)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-33 Score=237.13 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh------hcCcchhHHHHHHHHhhccCCch
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV------NEGGLYLGKQVHGYILRNEIVLS 100 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~ 100 (311)
..++.+|++|++.|++++|+++|++|.+.| +.||..||+++|.+|+..+ +.+.++.|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 468889999999999999999999999999 9999999999999987543 23457899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHc----ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSM----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
..+|++++.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999 5679999999999999999999999999999999999999999999999
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
|++.|+.++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999887 9999999999999998763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-31 Score=232.23 Aligned_cols=290 Identities=10% Similarity=-0.012 Sum_probs=258.9
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+..|.+.|++++|..+|+++.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.. .
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~---~ 352 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHE---S 352 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHH---H
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHH---h
Confidence 5678899999999999999966 789999999999999999999999999998754 3366778888876654 6
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|.++|+
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67999999999999664 55788999999999999999999999998843 367899999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-------
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM------- 229 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 229 (311)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 998874 457889999999999999999999999999864 2346788999999999999999999999988
Q ss_pred CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 230 PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 230 ~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+..|+ ..+|..++.+|.+.|++++|...++++.+.+|++..+|..++.+|.+.|++++|.+.|+++.+.+..
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 44677 6789999999999999999999999999999999999999999999999999999999999986543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-31 Score=227.63 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=170.0
Q ss_pred HHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC------
Q 040965 44 EAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC------ 116 (311)
Q Consensus 44 ~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 116 (311)
.+..+.+++.+.+ ..+. ...++.+|.+|++ .|++++|.++|++|.+.|+.||..+||+|+.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k---~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 8 PSENLSRKAKKKA--IQQSPEALLKQKLDMCSK---KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTT---SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred hHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 4455566676666 4333 3457778887764 77799999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHc----ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHH
Q 040965 117 ---LERAIRVFKSM----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189 (311)
Q Consensus 117 ---~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (311)
+++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 78999999999 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhc
Q 040965 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIH 248 (311)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 248 (311)
|++|.+. |+.||..||+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 163 ~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999988 99999999999999999999999999999999 8899999999999988653
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.4e-30 Score=225.82 Aligned_cols=288 Identities=10% Similarity=-0.035 Sum_probs=248.4
Q ss_pred hhhhhhcCChHHHHHHHHHhccc-------------------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc
Q 040965 2 IDGYVKNGDMDSAILLFENMLKR-------------------DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 62 (311)
+.+|.+.|++++|..+|+++... +..+|+.++.+|.+.|++++|+++|++|.+. .|+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~ 232 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV----DAK 232 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cch
Confidence 57899999999999999965332 4889999999999999999999999999884 454
Q ss_pred hHH-HHHHHHH-----------------------------------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 63 EAT-YVSVLSS-----------------------------------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 63 ~~~-~~~ll~~-----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
... +..+... ...+.+.|++++|.++++++.+. +++..+++.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 332 2222110 11222466799999999999876 578999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
++.+|.+.|++++|.++|+++.. .+..+++.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 99999999999999999999843 367889999999999999999999999998663 45788999999999999999
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ .. +++..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999863 2335779999999999999999999999998 33 447789999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 262 LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+..|+++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999886
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.6e-26 Score=192.73 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=180.0
Q ss_pred hhhhcCChHHHHHHHHHhc--cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENML--KR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.|.+.|++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ ..|+.......+.. .+...|
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~--~~~~~g 149 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----YNPDLYCVRSDLGN--LLKALG 149 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HCTTCTHHHHHHHH--HHHTTS
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHH--HHHHcc
Confidence 3444555555555555442 12 233455555555555555555555555544 23333222222211 111234
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..|+++... +...|..+...+...|++++|...+++
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666666666655543 223455556666666666666666666655322 344556666666666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCc
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDA 235 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 235 (311)
..+.. +.+..++..+...+...|++++|...|+++.+. .+.+..++..++.++.+.|++++|.+.|+++ ..+++.
T Consensus 229 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 65542 224667777778888888888888888888754 1223557788888888888888888888887 223456
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.++..+...+...|++++|...++++.+..|++..++..++.+|.+.|++++|...|+++.+.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888888888888888888888888888778888888888888888888888888764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.8e-25 Score=184.37 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=213.6
Q ss_pred hhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
.+.+.|++++|...++.... .+..+|..+..++.+.|++++|++.|+++.+ ..|+. ..|..+..++. ..
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~---~~ 114 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR----LKPDFIDGYINLAAALV---AA 114 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---HH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCcchHHHHHHHHHHHH---Hc
Confidence 34455666666666655522 2456777778888888888888888888776 44544 34555554433 25
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++... +..+|..+...+...|++++|...|+
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66888888888877764 234556667777888888888888888877432 45678888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
++.+.+ +.+...+..+...+...|++++|...+++.... .| +..++..++.+|...|++++|.+.|+++ ...|
T Consensus 194 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 887763 235677788888888888888888888888753 44 4677888889999999999999999888 4445
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..++..+...+...|++++|...++++.+..|++..++..++.++.+.|++++|...++++.+.
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45678888888999999999999999999999998889999999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.4e-25 Score=185.64 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=240.4
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~ 77 (311)
...|.+.|++++|+.+|+++.. .+..+|..++.++...|++++|+..|+++.+. .|+ ...+..+..++..
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-- 106 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLK-- 106 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH--
Confidence 3568899999999999999843 36889999999999999999999999999884 344 4555566554443
Q ss_pred hcCcchhHHHHHHHHhhccCCchH---HHHHHH------------HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSV---FMGTAL------------IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMI 139 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 139 (311)
.|++++|.+.++++.+..+ .+. ..+..+ ...+.+.|++++|+..|+++.. .+..++..++
T Consensus 107 -~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 107 -QGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp -TTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6779999999999998753 334 555555 4558999999999999999843 3678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHH---------
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCV--------- 209 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l--------- 209 (311)
.+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 447889999999999999999999999999854 443 3344444
Q ss_pred ---HHHHHhcCCHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 210 ---VDLLGRAGLLSEAKEFMRSM-PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 210 ---~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+..+...|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|...++++.+..|++..+|..++.+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78899999999999999998 44565 3467778889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHccC
Q 040965 281 GLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~ 300 (311)
..|++++|...++++.+...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSS
T ss_pred HhcCHHHHHHHHHHHHHhCc
Confidence 99999999999999987543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=8.8e-23 Score=173.22 Aligned_cols=284 Identities=13% Similarity=0.070 Sum_probs=232.2
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch----HHHHHHHHH--
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE----ATYVSVLSS-- 72 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~-- 72 (311)
...|.+.|++++|...|+++.+ | +..+|..++.+|.+.|++++|.+.|+++.+ ..|+. ..+..+...
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHH
Confidence 3568899999999999999843 3 578999999999999999999999999988 44554 444444322
Q ss_pred -------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHH
Q 040965 73 -------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSL 142 (311)
Q Consensus 73 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 142 (311)
...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|+..|+++.. .+..+|..++..|
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 112334778999999999999875 44678899999999999999999999999843 3678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHccccHHHHHHHHHHhhccCCCccc-----hhh
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAV------------LTACARAQLVELGLELFHSMLGKFEVVPI-----MEH 205 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~ 205 (311)
...|++++|...|+++.+.. +.+...+..+ ...+...|++++|...|+++++. .|+ ...
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~ 297 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRS 297 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHH
Confidence 99999999999999998763 2244444444 78899999999999999999864 343 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH------
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN------ 277 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~------ 277 (311)
+..++.++.+.|++++|.+.++++ ...| +...+..+..+|...|++++|...++++++..|+++.++..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 888999999999999999999998 4445 56889999999999999999999999999999999888888874
Q ss_pred ------HHhccc-----hhHHHHHHHHH
Q 040965 278 ------IHAGLE-----RWNRATDLRKA 294 (311)
Q Consensus 278 ------~~~~~g-----~~~~A~~~~~~ 294 (311)
.|...| +.+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 344445 45566777765
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2e-22 Score=165.62 Aligned_cols=287 Identities=12% Similarity=0.061 Sum_probs=235.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|+..|+++.. .+..+|..+..++...|++++|...|+++.+ ..|+ ...+..+..++. .
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~---~ 83 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA----LKMDFTAARLQRGHLLL---K 83 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---H
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCcchHHHHHHHHHH---H
Confidence 467889999999999999843 3678999999999999999999999999988 4454 445555544333 3
Q ss_pred cCcchhHHHHHHHHhhccCC--chHHHHHHH------------HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIV--LSVFMGTAL------------IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISS 141 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 141 (311)
.|++++|...++++.+..+. .+...+..+ ...+...|++++|+..++++.. .+...+..+...
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 67799999999999987531 345555545 5889999999999999999843 367888999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHH------------H
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYG------------C 208 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~------------~ 208 (311)
+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+ ...+. .
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999998763 447888999999999999999999999999864 332 22222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPDAS-----VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+...+.+.|++++|.+.++++ ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.++.+.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 366789999999999999998 4445543 2445667899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHccC
Q 040965 283 ERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~ 300 (311)
|++++|...|++..+...
T Consensus 320 g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TCHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 999999999999987653
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-22 Score=173.25 Aligned_cols=288 Identities=11% Similarity=-0.010 Sum_probs=239.7
Q ss_pred hhhhhcCChHHHHHHHHHhc--cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
..+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|+..++++.+ ..|+. ..+..+..++.. .
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~---~ 86 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE----LKPDYSKVLLRRASANEG---L 86 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHH---T
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc----cChHHHHHHHHHHHHHHH---H
Confidence 46788999999999999994 47889999999999999999999999999988 44554 456555554443 6
Q ss_pred CcchhHHHHHHHHhhccCCc------------------------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVL------------------------------------------------------------ 99 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~------------------------------------------------------------ 99 (311)
|++++|...|+++.+.+...
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 77999999999987765311
Q ss_pred ------------------hHHHHHHHHHHHhh---cCCHHHHHHHHHHccc----------------c-hHhhHHHHHHH
Q 040965 100 ------------------SVFMGTALIDLYGK---VGCLERAIRVFKSMVI----------------K-DVCTWNAMISS 141 (311)
Q Consensus 100 ------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 141 (311)
+...+..+...+.. .|++++|+..|+++.. | +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 13333334444443 8999999999998855 2 46788889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998874 34788889999999999999999999999864 23356688999999999999999
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 222 AKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 222 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+..++..++.++.+.|++++|...++++.+..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 99999998 3344 567788888899999999999999999999999998899999999999999999999999998765
Q ss_pred CC
Q 040965 300 IR 301 (311)
Q Consensus 300 ~~ 301 (311)
..
T Consensus 403 ~~ 404 (514)
T 2gw1_A 403 NK 404 (514)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-21 Score=157.16 Aligned_cols=263 Identities=13% Similarity=0.040 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...+..++..+...|++++|+++|+++.+.. +.+...+..+..++. ..|++++|...++++.+.. +.+..++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLV---ELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHH---HhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 34444555555555566666666666655432 111222222222221 2444666666666555543 2234455
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 105 TALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 105 ~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
..+...+...| ++++|...|+++... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 55555556665 566666666555221 34455555556666666666666666555542 12334444455555566
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCcchHHHHHHHHHhcC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF----------EPDASVLGALLGACKIHG 249 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g 249 (311)
|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 6666666666665542 1223445555555666666666666555554 10 122345555555555666
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++++|...++++.+..|++..++..++.++.+.|++++|...+++..+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 666666666666665555555566666666666666666666655544
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-21 Score=167.31 Aligned_cols=296 Identities=13% Similarity=-0.024 Sum_probs=233.3
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCC------------------
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR------------------ 60 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------ 60 (311)
...|.+.|++++|+..|+++.+ | +..+|..++.++.+.|++++|...|+++.+.++...
T Consensus 46 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Confidence 3578899999999999999843 3 678999999999999999999999999977541000
Q ss_pred ---------------------------------------------------------Cc-hHHHHHHHHHhhhhhhcCcc
Q 040965 61 ---------------------------------------------------------PN-EATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 61 ---------------------------------------------------------p~-~~~~~~ll~~~~~~~~~~~~ 82 (311)
|+ ...+......+....+.|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 00 11111111111111136779
Q ss_pred hhHHHHHHHHhh-----c--cC------CchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCC
Q 040965 83 YLGKQVHGYILR-----N--EI------VLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSR 147 (311)
Q Consensus 83 ~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 147 (311)
++|...++++.+ . .. +.+..++..+..++...|++++|...++++. .|+..++..+...+...|+
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCC
Confidence 999999999987 3 11 3346788889999999999999999999883 2347788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.++
T Consensus 286 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 286 STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988763 336678888999999999999999999999864 23345678888899999999999999999
Q ss_pred hC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh------HHHHHHHHHhc---cchhHHHHHHHHHHH
Q 040965 228 SM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG------RYVVLSNIHAG---LERWNRATDLRKAMV 296 (311)
Q Consensus 228 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~ 296 (311)
++ ...| +...+..+...+...|++++|...++++.+..|.+.. ++..++.++.. .|++++|...++++.
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 88 3334 5577888888899999999999999999988777644 88899999999 999999999999988
Q ss_pred HccC
Q 040965 297 EAGI 300 (311)
Q Consensus 297 ~~~~ 300 (311)
+...
T Consensus 443 ~~~~ 446 (514)
T 2gw1_A 443 KLDP 446 (514)
T ss_dssp HHCT
T ss_pred HhCc
Confidence 7643
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.1e-21 Score=159.48 Aligned_cols=275 Identities=12% Similarity=0.008 Sum_probs=226.6
Q ss_pred hhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 78 (311)
..+...|++++|..+|+++... +...+..++.++...|++++|..+++++.+. .| +...+..+...+..
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~--- 102 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYYLM--- 102 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHHHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHH---
Confidence 4577889999999999998543 4557777889999999999999999999884 34 34555555443332
Q ss_pred cC-cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 EG-GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.| ++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++... +...+..+...+...|++++|.+.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56 7999999999999875 345778899999999999999999999998432 457788899999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC-------CccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE-------VVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 155 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++..+.. +.+...+..+...+...|++++|...++++.+... .+.+..++..+..+|...|++++|.+.++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998763 44678899999999999999999999999876411 13345688999999999999999999999
Q ss_pred hC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH-hccchhH
Q 040965 228 SM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH-AGLERWN 286 (311)
Q Consensus 228 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 286 (311)
+. ...| +...+..+...+...|++++|...++++.+..|++..++..+..++ ...|+.+
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 98 3334 5678888899999999999999999999999999998999999988 4556543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.9e-22 Score=162.91 Aligned_cols=282 Identities=12% Similarity=-0.018 Sum_probs=215.3
Q ss_pred hhhcCChHHHHH-HHHHhcc--c-----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 5 YVKNGDMDSAIL-LFENMLK--R-----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 5 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+.-.|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~-- 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQA-- 109 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH--
Confidence 445678888888 8886632 1 24568889999999999999999999999843 224445555554333
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHH---------------H
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNA---------------M 138 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------l 138 (311)
..|++++|...++++.+.. +.+..++..+..+|...|++++|...++++... +...+.. .
T Consensus 110 -~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 110 -ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp -HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred -HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 3677999999999999876 446788899999999999999999999988432 2222211 1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++++. .+.+..++..++.++...|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 333348899999999999998864221 5788999999999999999999999999864 2335678899999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-----------CGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~ 284 (311)
++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|++ ..+|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999998 4344 45778888899999999999999999999888776 7789999999999999
Q ss_pred hHHHHHHHHHH
Q 040965 285 WNRATDLRKAM 295 (311)
Q Consensus 285 ~~~A~~~~~~m 295 (311)
+++|..++++-
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999888643
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=4.4e-20 Score=151.57 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=219.5
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC---chH-HHHHHHHH---
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP---NEA-TYVSVLSS--- 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p---~~~-~~~~ll~~--- 72 (311)
..+.+.|++++|...|+++.. | +...|..+...+...|++++|...|+++.+ ..| +.. .+..+...
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHH
Confidence 467889999999999999843 3 678999999999999999999999999988 556 433 33222100
Q ss_pred ------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHH
Q 040965 73 ------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLA 143 (311)
Q Consensus 73 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 143 (311)
...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.. .+..++..+...+.
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112334788999999999999875 44678889999999999999999999998843 36788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHccccHHHHHHHHHHhhccCCCccch--hhHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFV------------AVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHYGCV 209 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 209 (311)
..|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++++.+.....+.. ..+..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999998763 22333332 23667889999999999999998652221211 335567
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
..++...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++..++..+..+....+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88999999999999999998 4345 66788888899999999999999999999999999888888877766544
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=9.1e-21 Score=164.34 Aligned_cols=287 Identities=10% Similarity=0.060 Sum_probs=224.8
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|+..|+++.. .++.+|..+..+|.+.|++++|++.|+++.+ ..|+ ...+..+..++..
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~--- 105 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE----IKPDHSKALLRRASANES--- 105 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH---
Confidence 467889999999999999843 3778999999999999999999999999988 4455 4445444443333
Q ss_pred cCcchhHHHHHHHHhhccCCchH-------------------------------------H-------------------
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSV-------------------------------------F------------------- 102 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~------------------- 102 (311)
.|++++|...++.+ .....+.. .
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 66699999888633 21111000 0
Q ss_pred -----------HHHHHHHHHhh--------cCCHHHHHHHHHHcccch----------HhhHHHHHHHHHcCCCHHHHHH
Q 040965 103 -----------MGTALIDLYGK--------VGCLERAIRVFKSMVIKD----------VCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 103 -----------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
....+...+.. .|++++|..+++++...+ ..++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11222222221 247889999998884432 2357777788999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
.++++.+. .|+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.++++ ...
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999986 456788889999999999999999999999864 2335678999999999999999999999998 334
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
| +...+..+...+...|++++|...++++.+..|++..++..++.++...|++++|...++++.+....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 4 45788888899999999999999999999999999999999999999999999999999999886643
No 17
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=6.2e-20 Score=146.49 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=212.4
Q ss_pred hhhhhcCChHHHHHHHHHhcccc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKRD----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+-....|+++.|+..++.....+ ......+.++|...|+++.|+..++.. -+|+..++..+...+. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~---~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLA---S 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHc---C
Confidence 44567899999999998874432 345567889999999999999866441 3566666666665433 3
Q ss_pred cCcchhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
.++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667999999999998876434 567777888999999999999999998 56788999999999999999999999999
Q ss_pred HHHcCCCCcHHH---HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 158 MKEKGLRANEIT---FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 158 m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...|
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 98874 44321 122334455669999999999999975 4557788999999999999999999999997 4455
Q ss_pred -CcchHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 234 -DASVLGALLGACKIHGAVDL-CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
+..++..++..+...|+.++ +.++++++.+.+|+++. +.+...+.+.++++..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 55788889989999999976 67899999999999973 344556666666665443
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.1e-19 Score=157.59 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=163.9
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. |+..++..+...+...|++++|...++++.. .+..+|..+...+...|++++|.+.+
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777777777777654 3366677777788888888888888877732 25677888888888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC--
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-- 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-- 232 (311)
+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8887763 224567778888888888888888888888764 2334567788888888888888888888876 111
Q ss_pred -CC----cchHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 233 -PD----ASVLGALLGACKIH----------GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 233 -p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++ ...+......+... |++++|...++++.+..|++..++..++.+|.+.|++++|...|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 11233344556666 8999999999999999999888999999999999999999999998887
Q ss_pred ccCC
Q 040965 298 AGIR 301 (311)
Q Consensus 298 ~~~~ 301 (311)
....
T Consensus 491 ~~~~ 494 (537)
T 3fp2_A 491 LART 494 (537)
T ss_dssp HC--
T ss_pred hCCC
Confidence 6543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.1e-20 Score=156.03 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=207.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.. .|++++|...++++.+.. +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAE---NENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 34458889999999999999999999998843 2345556666554443 677999999999999875 4467889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhh----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCT----------WNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITF 170 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~----------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 170 (311)
..+..+|...|++++|+..|+++... +... +..+...+...|++++|.+.++++.+.... ++..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999999998443 2222 334578899999999999999999887422 167889
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhc
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIH 248 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 248 (311)
..+...+...|++++|...|+++++. .+.+..++..+..+|...|++++|.+.|+++ ...|+ ..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 99999999999999999999999864 2345678999999999999999999999998 44454 67788888999999
Q ss_pred CChhHHHHHHHHHHhcCCC------------chhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPK------------HCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
|++++|...++++++..|+ +..+|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999987766 246788999999999999988887754
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7.1e-21 Score=157.16 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=199.2
Q ss_pred HHHhcCCHhHHHH-HHHHhhcCCCCCCC--chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040965 35 GFVRNGCFGEAIC-VFKNMMGNVNLVRP--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111 (311)
Q Consensus 35 ~~~~~g~~~~A~~-~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (311)
++.-.|++++|++ .|++..+..+ ..| +...+..+...+. ..|++++|...++++.+.. +.+..++..+..+|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEE-ENPLRDHPQPFEEGLRRL---QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ 108 (368)
T ss_dssp ------------CHHHHCCCCCCS-SCTTTTCSSHHHHHHHHH---HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCC-CCcccchHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445689999999 9998776431 112 2233444443332 3777999999999999875 44678889999999
Q ss_pred hhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHH---------------H
Q 040965 112 GKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA---------------V 173 (311)
Q Consensus 112 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------l 173 (311)
.+.|++++|+..|+++.. .+..++..+...+...|++++|.+.++++.+.... +...+.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 999999999999998843 36788999999999999999999999999886422 2222211 2
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 251 (311)
+..+...|++++|...++++.+.....++..++..+...|...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 33444899999999999999865222224778999999999999999999999998 3345 467888899999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
++|...++++.+..|++..++..++.+|.+.|++++|...+++..+....
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999876543
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=8.2e-20 Score=148.16 Aligned_cols=262 Identities=9% Similarity=-0.045 Sum_probs=211.2
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++. ..|++++|.+.++++.+.. +.+..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~-~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQA---ENEKDGLAIIALNHARMLD-PKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC-cCCHHHH
Confidence 34567778889999999999999999998743 224445555444333 3677999999999998875 4467788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAM--------------IS-SLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
..+..+|...|++++|...++++... +...+..+ .. .+...|++++|.+.++++.+.. +.+
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 88999999999999999999988433 23333333 33 3778899999999999998874 347
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.++++ ...| +...+..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 788999999999999999999999999864 2335678899999999999999999999998 3344 56778888899
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC------------chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPK------------HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+...|++++|...++++.+..|. +..++..++.++.+.|++++|..++++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999998888 77899999999999999999999987544
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=2.4e-19 Score=143.04 Aligned_cols=249 Identities=9% Similarity=0.021 Sum_probs=199.7
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH--HHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEA--TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
++-....|++..|+..++.... ..|+.. ....+..++.. .|+++.|...++.. -+|+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~----~~p~~~~e~~~~l~r~yi~---~g~~~~al~~~~~~----~~~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP----SSPERDVERDVFLYRAYLA---QRKYGVVLDEIKPS----SAPELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHH---TTCHHHHHHHSCTT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc----CCchhhHHHHHHHHHHHHH---CCCHHHHHHHhccc----CChhHHHHHHHHHH
Confidence 4556788999999999988765 445542 32334443333 66688888766542 36678889999999
Q ss_pred HhhcCCHHHHHHHHHHcc----cc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 111 YGKVGCLERAIRVFKSMV----IK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
+...|+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999874 24 566778888999999999999999987 4577889999999999999999
Q ss_pred HHHHHHHhhccCCCccchhhH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHY---GCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
|...|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|...+++
T Consensus 149 A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999865 4553211 22334445569999999999999 3345667888899999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHH-HHHHHHHHHHccCC
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNR-ATDLRKAMVEAGIR 301 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 301 (311)
+++.+|+++.++..++..+...|+.++ +.++++++.+.++.
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999976 57899998876543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=5.4e-20 Score=151.89 Aligned_cols=220 Identities=13% Similarity=0.014 Sum_probs=183.6
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
+.|++++|...++++++.. +.+..++..+..+|.+.|++++|+..|+++.. .+..+|..+..+|...|++++|.+.
T Consensus 77 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 3777999999999999875 44688899999999999999999999999843 3578899999999999999999999
Q ss_pred HHHHHHcCCCCc-----------HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 040965 155 FDEMKEKGLRAN-----------EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 155 ~~~m~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
++++.+.. |+ ...+..+...+...|++++|...++++.+.....++..++..+...|...|++++|.
T Consensus 156 ~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 156 LKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99998752 32 223344578899999999999999999875222225778999999999999999999
Q ss_pred HHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 224 EFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 224 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.++++ ...| +..++..+...|...|++++|...++++++..|++..++..++.+|.+.|++++|...|++..+...
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999998 3344 5688899999999999999999999999999999999999999999999999999999999987653
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=1.3e-21 Score=160.25 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=120.3
Q ss_pred hhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++.. .|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~---~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANT---SGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHh---CCCHHHH
Confidence 4678899999999999554 59999999999999999999999653 466688888886655 6669999
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988777764 4557788999999999999999998885 477789999999999999999999999976
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 245 (311)
..|..++.++.+.|+++.|.+.++++. ++.+|..++.+|...|+++.|......+...|+. ...++..|
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Y 217 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY 217 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHH
Confidence 379999999999999999999999982 5678999999999999999998877776555544 44688899
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc--chhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL--ERWNRATDLRK 293 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 293 (311)
.+.|.+++|..+++..+..++.....|..|..+|++- ++..+..+.|.
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999989999888888754 55555555553
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=3.8e-19 Score=144.23 Aligned_cols=253 Identities=12% Similarity=0.022 Sum_probs=202.7
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|..+|+++.. .+..+|..+..++...|++++|.+.++++.+. .| +...+..+...+. .
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~---~ 101 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHT---N 101 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH---H
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHH---H
Confidence 457789999999999999843 36788999999999999999999999999884 44 4455555554433 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHH--------------HH-HHhhcCCHHHHHHHHHHccc---chHhhHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTAL--------------ID-LYGKVGCLERAIRVFKSMVI---KDVCTWNAMIS 140 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 140 (311)
.|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.. .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 67799999999999887422 33333333 33 47888999999999998843 36788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
.+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..+|...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998873 346788999999999999999999999999864 2335678899999999999999
Q ss_pred HHHHHHHhC-CCCCC-------------cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 221 EAKEFMRSM-PFEPD-------------ASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 221 ~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+|.+.++++ ...|+ ...+..+...+...|++++|..++++.++..|
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999988 33343 56788888999999999999999987765433
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=2.6e-18 Score=131.22 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=157.6
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
+++...+..+...+.+.|++++|+..|++.... +...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 556778888999999999999999999988433 67888899999999999999999999998873 33677888899
Q ss_pred HHHHcc-----------ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHH
Q 040965 175 TACARA-----------QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGAL 241 (311)
Q Consensus 175 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 241 (311)
.++... |++++|...+++.++. .| +...+..+..+|...|++++|.+.|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 9999999999999864 44 4678889999999999999999999998 222677888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...+...|++++|...++++++..|+++.++..++.++.+.|++++|...+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999987653
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=164.26 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHc-------ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSM-------VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
.-..+||+||++|++.|++++|.++|++| ..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34578999999999999999999999876 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccH-HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------cchHHHHHHH
Q 040965 172 AVLTACARAQLV-ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD------ASVLGALLGA 244 (311)
Q Consensus 172 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~ 244 (311)
++|.++++.|+. +.|.++|++|.++ |+.||..+|+.++..+.+.+-++.+.++...+ .|+ ..+...|...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHHHH
Confidence 999999999984 7899999999988 99999999999998776654444444443333 332 3444455555
Q ss_pred HHhcC
Q 040965 245 CKIHG 249 (311)
Q Consensus 245 ~~~~g 249 (311)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 65544
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=141.01 Aligned_cols=299 Identities=9% Similarity=-0.043 Sum_probs=198.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc-----------ccHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcCCCCCCCchHH-HHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK-----------RDVVSWTSIINGFVRN--GCFGEAICVFKNMMGNVNLVRPNEAT-YVS 68 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ 68 (311)
.+|...|++++|...+++... ....++..+..++... +++++|++.|++..+ +.|+... +..
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~~~~~~~ 177 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKNPEFTSG 177 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 357789999999999988732 1345777776666654 579999999999988 5566543 333
Q ss_pred HHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh----hcCCHHHHHHHHHHcc---cchHhhHHHHHHH
Q 040965 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG----KVGCLERAIRVFKSMV---IKDVCTWNAMISS 141 (311)
Q Consensus 69 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 141 (311)
+..++..+...++.++|++.+++.++.. +.+..++..+...+. ..|++++|.+.+++.. ..+..++..+...
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4434445555677899999999988875 334556655555444 3467889999998873 3367788899999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc-------------------ccHHHHHHHHHHhhccCCCccc
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA-------------------QLVELGLELFHSMLGKFEVVPI 202 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 202 (311)
|...|++++|.+.+++..+.. +-+..++..+..+|... +..+.|...+++..+. .+.+
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 333 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNL 333 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTT
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCch
Confidence 999999999999999998863 33566676666555432 3467888888888753 2334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch----HHHHHH-HHHhcCChhHHHHHHHHHHhc------------
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV----LGALLG-ACKIHGAVDLCHEVGRRLLEL------------ 264 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~a~~~~~~~~~~------------ 264 (311)
..++..+...|...|++++|.+.|++. ...|+... +..+.. .....|++++|...|++++++
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 567889999999999999999999987 44454422 222322 234678999999888887654
Q ss_pred ------------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 265 ------------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 265 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
+|+++.+|..|+.+|...|++++|.+.|++.++.|...+...+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 466677899999999999999999999999999888777787776
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.2e-17 Score=128.20 Aligned_cols=208 Identities=10% Similarity=-0.023 Sum_probs=139.8
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--h--------HhhHHHHHHHHHcCCCH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--D--------VCTWNAMISSLASNSRE 148 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~ 148 (311)
.|++++|...+++..+.. .+..++..+..+|...|++++|+..++++... + ..+|..+...+...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 444555555555555544 44555566666666666666666666665321 1 45666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040965 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (311)
++|.+.+++..+. .|+. ..+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++
T Consensus 96 ~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 96 KKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777777777664 3332 3455667777787777777653 222445667777777778888888887777
Q ss_pred C-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 229 M-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 229 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+ ...| +...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 7 2233 456667777777788888888888888888778777778888888888888888888887776654
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-17 Score=129.24 Aligned_cols=238 Identities=9% Similarity=-0.057 Sum_probs=191.0
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--h--
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--S-- 100 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~-- 100 (311)
....|..+...+...|++++|+..|+++.+.. ++...+..+..++.. .|++++|...+++..+..... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYE---KGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCcccccchH
Confidence 35678889999999999999999999998743 556666666654443 667999999999988764221 1
Q ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 101 --VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 101 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
..++..+..+|...|++++|...|+++...+.. ...+...|++++|...++++.... +.+...+..+...+.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 578889999999999999999999998543222 245667789999999999988762 225678888899999
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++++|...++++.+. .+.+..++..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999864 2335678899999999999999999999998 3344 46778888899999999999999
Q ss_pred HHHHHHhcC------CCchhHHHHHHH
Q 040965 257 VGRRLLELQ------PKHCGRYVVLSN 277 (311)
Q Consensus 257 ~~~~~~~~~------~~~~~~~~~l~~ 277 (311)
.++++.+.. |.+...+..+..
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999988 777766665544
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=2.8e-17 Score=129.95 Aligned_cols=243 Identities=10% Similarity=-0.096 Sum_probs=166.9
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
..|++++|++.|+++.+.....+| +...+..+..++ ...|++++|...++++.+.. +.+..++..+..+|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLY---DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH---HHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 346677777777777664310111 122333333222 22556777777777777654 3356677778888888888
Q ss_pred HHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+++|...|+++.. .+..++..+...+...|++++|.+.++++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888743 25677888888888999999999999988876 344334444445557779999999999887
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
... .+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++.+..|+
T Consensus 171 ~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 171 FEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred Hhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 764 23333333 4677777888888999888887 33332 467778888899999999999999999999887
Q ss_pred chhHHHHHHHHHhccchhHHHHHHH
Q 040965 268 HCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
+...+ ..++...|++++|.+.+
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC----
T ss_pred hHHHH---HHHHHHHHHHHhhHHHH
Confidence 64333 55677888999988776
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=159.74 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=107.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHH---HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMK---EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (311)
...+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHH
Confidence 45689999999999999999999998876 4589999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHhC---CCCCCcchHHHHHHHHHh
Q 040965 208 CVVDLLGRAGL-LSEAKEFMRSM---PFEPDASVLGALLGACKI 247 (311)
Q Consensus 208 ~l~~~~~~~g~-~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 247 (311)
+||.++++.|+ .++|.++|++| |+.||..+|++++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999998 47899999999 999999999999876544
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.7e-19 Score=143.72 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=133.3
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+++++...+. .++..+.+.++.++..+ |
T Consensus 38 La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i~~~Li~~Y~Kl---g 108 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKT---N 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHh---C
Confidence 456889999999999999764 67779999999999999999999988877663 45567788888877664 4
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 5888877774 367789999999999999999999999977 58999999999999999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVL 238 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 238 (311)
.+..+|..++.+|...|+++.|......+ ...|+ ....++..|.+.|++++|..+++.. +..+ ....|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 27899999999999999999996655543 23344 3557899999999999999999987 5554 34566
Q ss_pred HHHHHHHHh--cCChhHHHHHHHHHHhcCC-----CchhHHHHHHHHHhccchhHHHHHHH
Q 040965 239 GALLGACKI--HGAVDLCHEVGRRLLELQP-----KHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 239 ~~l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
.-|...|++ .++..+..+.|..-+...| .....|..+...|...++++.|....
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 666666654 3455555555554433444 45568999999999999999887743
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=6.5e-17 Score=126.25 Aligned_cols=199 Identities=9% Similarity=-0.064 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
...+..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56777788888888888888888887743 256778888888888888888888888887763 33667788888888
Q ss_pred HccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888899998888888762 2344 4567777888888888999888888887 3334 456777778888888899999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
...++++.+..|++...+..++..+...|++++|.++++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999888888888878888888888889999999888888876543
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=8.9e-17 Score=123.01 Aligned_cols=200 Identities=10% Similarity=-0.022 Sum_probs=151.4
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
.+..++..+...+...|++++|.+.++++.. .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456677778888888888888888887633 246677778888888888888888888877763 335677777888
Q ss_pred HHHcc-ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh
Q 040965 176 ACARA-QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV 251 (311)
Q Consensus 176 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 251 (311)
.+... |++++|...++++.+. +..| +...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 8888888888888762 2333 3566777788888888888888888877 3334 456677777788888888
Q ss_pred hHHHHHHHHHHhcCC-CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 252 DLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 888888888888888 7777777777788888888888888888776543
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=7.4e-17 Score=127.38 Aligned_cols=245 Identities=12% Similarity=-0.019 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch--HHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMG 104 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 104 (311)
.+......+...|++++|+..|+++.+. .|+. ..+..+..++. ..|++++|...+++..+.+..++ ...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYY---ELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3445666777777777777777777763 3332 24444443322 25557777777777776331121 2336
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..+..+|...|++++|+..|++... .+..+|..+...|...|++++|.+.+++..+.. +.+...+..+...+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 6677777777777777777777633 245667777777777777777777777766542 224555555552333345
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCCc------chHHHHHHHHHhc
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM----PFEPDA------SVLGALLGACKIH 248 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~ 248 (311)
++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++. ...|+. ..|..+...|...
T Consensus 157 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777777653 12234556666666666666 66666666555 112332 3556666777778
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
|++++|...++++.+.+|+++.+...+.......
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 8888888888888888888776666665554433
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=8.5e-17 Score=124.75 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
.+..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 333444444444555555444444421 133444444444445555555555555444432 1234444444444455
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
.|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544432 1122334444444455555555555555444 1112 233444444444555555555555
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
++++.+..|.+..++..++.+|...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555544444555555555555555555555554443
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=6.4e-15 Score=127.59 Aligned_cols=289 Identities=11% Similarity=0.056 Sum_probs=198.5
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHh--------
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC-------- 73 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~-------- 73 (311)
+.+.|++++|..+|+++.. | +...|..++..+.+.|++++|..+|+++.+ ..|+...|...+...
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~----~~p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM----KVLHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TCCCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHccchh
Confidence 3568999999999999954 3 677899999999999999999999999987 446655444333210
Q ss_pred ------------------------------hhhh----------hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH--
Q 040965 74 ------------------------------AGLV----------NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111 (311)
Q Consensus 74 ------------------------------~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 111 (311)
..+. ..|+++.|..+|++.++....+....|.......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 0000 0345667777777776631111112222111100
Q ss_pred -----------hhcCCHH------------------------------------------------------------HH
Q 040965 112 -----------GKVGCLE------------------------------------------------------------RA 120 (311)
Q Consensus 112 -----------~~~g~~~------------------------------------------------------------~A 120 (311)
.+.+++. ++
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 0111122 23
Q ss_pred HHHHHHccc---chHhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 121 IRVFKSMVI---KDVCTWNAMISSLAS-------NSREK-------EALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
..+|+++.. .+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 333443322 134556566666654 68876 8888888877521233578888888888999999
Q ss_pred HHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHH-HHhcCChhHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGA-CKIHGAVDLCHEVG 258 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~~ 258 (311)
++|..+|+++++. .|+ ...|..++..+.+.|++++|.++|++. ...|+. ..+...... +...|+.++|..+|
T Consensus 338 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999999999864 443 247888888888899999999999988 444432 233322222 33689999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++++..|+++..+..++..+.+.|+.++|..+|++....+.
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999988754
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.8e-16 Score=131.12 Aligned_cols=266 Identities=12% Similarity=0.038 Sum_probs=165.8
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---- 95 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---- 95 (311)
....+......+...|++++|...|+++.+. .|+. ..+..+...+. ..|++++|...+++..+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhc
Confidence 3445566677777777777777777777763 2332 22333332222 255677777777766543
Q ss_pred cCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC------------------
Q 040965 96 EIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR------------------ 147 (311)
Q Consensus 96 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~------------------ 147 (311)
+..| ...++..+..+|...|++++|...+++.... ...++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 1112 2456667777777778888887777766322 13366677777777777
Q ss_pred --HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhc
Q 040965 148 --EKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRA 216 (311)
Q Consensus 148 --~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 216 (311)
+++|.+.+++..+. +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 77777777765432 1111 2345666777777778888888777776643111111 23566777777778
Q ss_pred CCHHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhcc
Q 040965 217 GLLSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGL 282 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 282 (311)
|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 8888887777765 11 111 345566666777788888888888777764322 144666777777788
Q ss_pred chhHHHHHHHHHHHH
Q 040965 283 ERWNRATDLRKAMVE 297 (311)
Q Consensus 283 g~~~~A~~~~~~m~~ 297 (311)
|++++|...+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777654
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=9.9e-17 Score=134.36 Aligned_cols=265 Identities=11% Similarity=0.040 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-----HHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc----
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-----TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE---- 96 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---- 96 (311)
...+..+...+...|++++|+..|+++.+. .|+.. .+..+...+. ..|++++|...+++.++..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHcc
Confidence 345667788899999999999999999884 34432 3434433332 3677999999999887641
Q ss_pred -CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC-----------------HH
Q 040965 97 -IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR-----------------EK 149 (311)
Q Consensus 97 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~ 149 (311)
.+....++..+...|...|++++|...++++... ...++..+...|...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1334678888999999999999999999887322 34578888999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHH
Q 040965 150 EALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 150 ~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 220 (311)
+|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999999886542 2122 2357788888999999999999999998754111111 237788899999999999
Q ss_pred HHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccchhH
Q 040965 221 EAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 221 ~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~ 286 (311)
+|.+.+++. ... .+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999999887 111 11 356777888899999999999999999875432 2347889999999999999
Q ss_pred HHHHHHHHHHH
Q 040965 287 RATDLRKAMVE 297 (311)
Q Consensus 287 ~A~~~~~~m~~ 297 (311)
+|...+++..+
T Consensus 361 ~A~~~~~~al~ 371 (411)
T 4a1s_A 361 RALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.2e-16 Score=126.34 Aligned_cols=218 Identities=13% Similarity=-0.061 Sum_probs=179.4
Q ss_pred cCcchhHHHHHHHHhhccC---CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
.|++++|...++++.+... +.+..++..+..++...|++++|...|+++.. .+..+|..+...+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 5679999999999998642 23567888999999999999999999999843 36788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++. ..
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999863 336788999999999999999999999999864 455444444555667789999999999776 33
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----chhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.|+......++..+...++.++|...++++.+..|. +..++..++.+|.+.|++++|...|++..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 344444445777788888999999999999876654 356889999999999999999999999987653
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=3.8e-16 Score=119.17 Aligned_cols=194 Identities=11% Similarity=-0.016 Sum_probs=133.7
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (311)
++...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+-.++. ..|++++|...+++.++.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~~-P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK----ENPQDPEALYWLARTQL---KLGLVNPALENGKTLVART-PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 4566788888888999999999999999887 44554 33333333222 3667888998888888875 33567
Q ss_pred HHHHHHHHHhhc-----------CCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 103 MGTALIDLYGKV-----------GCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 103 ~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
.+..+..++... |++++|+..|++... | +...|..+..++...|++++|+..|++..+.. .+..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 778888888888 888888888887733 3 56677778888888888888888888887776 5677
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+..+..++...|++++|...|+++++. .+.+...+..+...+...|++++|.+.+++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7778888888888888888888888753 2234566777778888888888888877765
No 43
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.2e-14 Score=124.57 Aligned_cols=80 Identities=14% Similarity=-0.046 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHH
Q 040965 218 LLSEAKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRAT 289 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 289 (311)
++++|.++|++.-...+...+..+...|.. .+++++|...|+++.+.+ ++.++..|..+|.. .+++++|.
T Consensus 346 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344444444444111233444444444444 455555555555554432 23345555555554 45555555
Q ss_pred HHHHHHHHcc
Q 040965 290 DLRKAMVEAG 299 (311)
Q Consensus 290 ~~~~~m~~~~ 299 (311)
..|++..+.+
T Consensus 424 ~~~~~A~~~~ 433 (490)
T 2xm6_A 424 AWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 5555555544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=4.2e-16 Score=128.50 Aligned_cols=245 Identities=7% Similarity=-0.008 Sum_probs=197.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhhhcCc-chhHHHHHHHHhhccCCchHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 102 (311)
+..+|+.+..++.+.|++++|++.|+++++ +.|+.. .|..+-.++. ..|+ +++|+..++++++.. +.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~-P~~~~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQ-PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHC-CCCHH
Confidence 456888999999999999999999999998 567654 4444443333 3665 999999999999986 44788
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
+|..+..++...|++++|+..|++++.. +...|..+..++...|++++|+..++++.+.. +-+...|+.+..++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998443 67889999999999999999999999999874 3377889999989888
Q ss_pred -cccHHHH-----HHHHHHhhccCCCcc-chhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcC
Q 040965 180 -AQLVELG-----LELFHSMLGKFEVVP-IMEHYGCVVDLLGRAG--LLSEAKEFMRSMPFEPD-ASVLGALLGACKIHG 249 (311)
Q Consensus 180 -~~~~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g 249 (311)
.|..++| +..+++.+.. .| +...|..+...+...| ++++|.+.++++...|+ ...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 6665777 5888888853 44 4568888888888888 68999999988844554 466777778887764
Q ss_pred ---------ChhHHHHHHHHH-HhcCCCchhHHHHHHHHHhc
Q 040965 250 ---------AVDLCHEVGRRL-LELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 281 (311)
.+++|..+++++ .+.+|.....|..++..+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999998888888776654
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=1.3e-16 Score=129.42 Aligned_cols=265 Identities=11% Similarity=0.028 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cC
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EI 97 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~ 97 (311)
..+......+...|++++|...|+++.+. .|+. ..+..+...+. ..|++++|.+.+++..+. +.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccc
Confidence 45556677888999999999999998874 3432 23333333322 366789999988877654 21
Q ss_pred C-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC--------------------
Q 040965 98 V-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR-------------------- 147 (311)
Q Consensus 98 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-------------------- 147 (311)
. ....++..+...|...|++++|...+++.... ...++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 2 23567788899999999999999999887332 13478888899999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCC
Q 040965 148 EKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 148 ~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 218 (311)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+.....+ ...++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999886542 2122 235677888889999999999999998875311111 13377888899999999
Q ss_pred HHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccch
Q 040965 219 LSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLER 284 (311)
Q Consensus 219 ~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 284 (311)
+++|.+.+++. .. .++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887 11 122 356677778899999999999999999875433 23478889999999999
Q ss_pred hHHHHHHHHHHHHc
Q 040965 285 WNRATDLRKAMVEA 298 (311)
Q Consensus 285 ~~~A~~~~~~m~~~ 298 (311)
+++|...+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998864
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=4.8e-15 Score=117.18 Aligned_cols=229 Identities=9% Similarity=-0.079 Sum_probs=163.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
++.++..+...+...|++++|++.|++..+.+ +...+..+-..+.. .+..+++++|...+++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 56778888888888899999999999887633 22333333332221 111566888888888888775 5666
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 104 GTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 104 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
+..+...|.. .+++++|+..|++.... +..++..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7778888888 88888888888877544 56677777788877 888888888888887765 455666677
Q ss_pred HHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 040965 175 TACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM-PFEPDASVLGALLGAC 245 (311)
Q Consensus 175 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 245 (311)
..|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ... +...+..+...|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77776 78888888888887754 2 34566777777777 78888888888776 222 255666666777
Q ss_pred Hh----cCChhHHHHHHHHHHhcCCCch
Q 040965 246 KI----HGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~----~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.. .+++++|...++++.+.+|++.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 77 7788888888888887777654
No 47
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2.1e-14 Score=123.19 Aligned_cols=273 Identities=10% Similarity=-0.053 Sum_probs=146.3
Q ss_pred cCChHHHHHHHHHhccc-cHHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCc
Q 040965 8 NGDMDSAILLFENMLKR-DVVSWTSIINGFVR----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGG 81 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 81 (311)
.+++++|...|++..+. ++.++..|...|.. .+++++|.+.|++..+.+ +...+..+-..+.. .+..++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-----LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCC
Confidence 57777777777776433 56667777777777 777777777777776644 22233333222211 111345
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEAL 152 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~ 152 (311)
+++|...|++..+.| +...+..|..+|.. .+++++|++.|++..+. +..++..+...|.. .+++++|.
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 677777777766654 34445556666655 56677777777665333 45555666666655 56666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHH
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKE 224 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 224 (311)
++|++..+.| +...+..+...|.. .++.++|..+|++..+. + +...+..+...|.. .+++++|.+
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 6666665543 33444445555543 55666666666665543 1 22234444445544 555555655
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc---hhHHHHHHHHHHH
Q 040965 225 FMRSMPFEPDASVLGALLGACKIH-----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE---RWNRATDLRKAMV 296 (311)
Q Consensus 225 ~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~ 296 (311)
+|++.-...+...+..+...|... +++++|...++++.+.++ +.++..|...|...| ++++|.++|++..
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 555551122333444444444443 455555555555544322 223444444444333 4444555554444
Q ss_pred H
Q 040965 297 E 297 (311)
Q Consensus 297 ~ 297 (311)
+
T Consensus 359 ~ 359 (490)
T 2xm6_A 359 A 359 (490)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=3.2e-15 Score=116.56 Aligned_cols=191 Identities=16% Similarity=0.030 Sum_probs=152.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.. .+...+..+...+...|++++|.+++
T Consensus 50 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666888888888877764 33567777888888888999999988888733 25677888888899999999999999
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
+++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..++..|...|++++|.+.++++ ...|
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9887733344 5677888888899999999999999998864 2334667888889999999999999999887 4444
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
+...+..+...+...|++++|...++++.+..|+++...
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 446677777888899999999999999999999887444
No 49
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=4.1e-16 Score=129.50 Aligned_cols=291 Identities=8% Similarity=0.012 Sum_probs=204.4
Q ss_pred hhhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHH--HhcCCHhHHH-----------HHHHHhhcCCCCCCCc
Q 040965 4 GYVKNGDMDSAILLFENMLK--------RDVVSWTSIINGF--VRNGCFGEAI-----------CVFKNMMGNVNLVRPN 62 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~p~ 62 (311)
.+.+.+++++|..+++++.. ++...|..++..- .-.++++.+. +.++.+.... .+.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 46789999999999998822 2344445444332 2234444444 6666664321 0111
Q ss_pred h-H-HHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----
Q 040965 63 E-A-TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK----- 130 (311)
Q Consensus 63 ~-~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 130 (311)
. . .|.....+.... ..|++++|...+++..+. +.++ ...++..+..+|...|++++|+..+++...-
T Consensus 99 ~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 0 1 111112222222 378899999999998874 2222 3578889999999999999999999887321
Q ss_pred -----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---
Q 040965 131 -----DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF--- 197 (311)
Q Consensus 131 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 197 (311)
...+++.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++.++..
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2457888999999999999999999987753 1111 13478889999999999999999999987620
Q ss_pred CC-ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-cchHHHHHHHHHhcCC---hhHHHHHHHHHHhcCC
Q 040965 198 EV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-----EPD-ASVLGALLGACKIHGA---VDLCHEVGRRLLELQP 266 (311)
Q Consensus 198 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 266 (311)
+. +....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|..++++. ...|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 12 334567889999999999999999999887 11 121 2234556667888888 77788777776 2334
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.....+..++..|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44557889999999999999999999998764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=5.7e-16 Score=122.26 Aligned_cols=220 Identities=7% Similarity=-0.025 Sum_probs=180.3
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--chH----hhHHHHHHHHHcCCCHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--KDV----CTWNAMISSLASNSREKEA 151 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a 151 (311)
..|++++|...++++.+.. +.+...+..+..+|...|++++|+..++++.. ++. .+|..+...+...|++++|
T Consensus 15 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 3778999999999999875 33566888899999999999999999999854 232 3488999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 152 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
.+.|++..+.. +.+..++..+...+...|++++|...+++.++. .+.+...+..+...+...+++++|.+.|+++ .
T Consensus 94 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 94 IQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998863 336678999999999999999999999999864 2334567777773444556999999999998 4
Q ss_pred CCCC-cchHHHHHHHHHhcCC---hhHHHHHHHHHHhcC---CCc-----hhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 231 FEPD-ASVLGALLGACKIHGA---VDLCHEVGRRLLELQ---PKH-----CGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 231 ~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..|+ ...+..+...+...|+ +++|...++++.+.. |+. ..+|..++..|...|++++|...+++..+.
T Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4554 5667777778888888 889999999998754 442 257888999999999999999999999987
Q ss_pred cCC
Q 040965 299 GIR 301 (311)
Q Consensus 299 ~~~ 301 (311)
.+.
T Consensus 251 ~p~ 253 (272)
T 3u4t_A 251 DPT 253 (272)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.5e-16 Score=131.44 Aligned_cols=281 Identities=12% Similarity=0.048 Sum_probs=208.0
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|...|+++.. | + ..+|..+...+...|++++|...++++.+..... .|. ...+..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 457789999999999999843 2 3 3578899999999999999999999876531101 222 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCC--------------------HHHHHHHHHHc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGC--------------------LERAIRVFKSM 127 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 127 (311)
+...|++++|...+++..+.... ....++..+...|...|+ +++|...+++.
T Consensus 97 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 97 ---LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 23377799999999988764211 124578889999999999 99999998876
Q ss_pred ccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 128 VIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 128 ~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
... ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 321 3457888899999999999999999998653 1111 1347888888999999999999999998
Q ss_pred hccC---CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 194 LGKF---EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-P---FEPD----ASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
.+.. +..+ ...++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...++++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7431 1111 1557788899999999999999999887 1 1122 456777888899999999999999999
Q ss_pred HhcC------CCchhHHHHHHHHHhccchhH
Q 040965 262 LELQ------PKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 262 ~~~~------~~~~~~~~~l~~~~~~~g~~~ 286 (311)
.+.. +....++..+...+...|+..
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8742 223457778888888888763
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=8.4e-15 Score=115.77 Aligned_cols=210 Identities=11% Similarity=-0.058 Sum_probs=181.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 149 (311)
.|++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++.... +..++..+...|.. .++++
T Consensus 19 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence 667999999999998843 45677889999999 99999999999998554 67888889999999 99999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHH
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSE 221 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 221 (311)
+|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++
T Consensus 96 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 96 KALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999999998875 67788888889998 99999999999999875 3 45577888888888 999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHHHHHH
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRATDLRK 293 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 293 (311)
|.+.|++.--..+...+..+...|.. .+++++|...++++.+.+| +.++..+..+|.. .+++++|...|+
T Consensus 169 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999988212456777888888988 9999999999999998876 4588899999999 999999999999
Q ss_pred HHHHccC
Q 040965 294 AMVEAGI 300 (311)
Q Consensus 294 ~m~~~~~ 300 (311)
+..+.|.
T Consensus 247 ~a~~~~~ 253 (273)
T 1ouv_A 247 KGCKLGA 253 (273)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9988764
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=4.5e-16 Score=120.62 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=146.2
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.. .+..++..+...+...|++++|.+.+
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 555666666666666543 33456666777777788888888888877632 25667777888888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...|
T Consensus 115 ~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 115 EKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8887763 346677888888888899999999999888764 2335667888888899999999999999887 3333
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+..++..+...+...|++++|...++++.+..|++..++..+.....
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 45678888889999999999999999999999998877766554443
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.7e-14 Score=122.93 Aligned_cols=292 Identities=10% Similarity=-0.033 Sum_probs=206.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc-----------c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC----CCCCc-hHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK-----------R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN----LVRPN-EAT 65 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~p~-~~~ 65 (311)
..+...|++++|++.|++..+ + ...+|+.+..+|...|++++|...+++..+..+ ...++ ..+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 356788999999999988621 1 356899999999999999999999998764210 01222 234
Q ss_pred HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH---hhcCCHHHHHHHHHHccc---chHhhHHHHH
Q 040965 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY---GKVGCLERAIRVFKSMVI---KDVCTWNAMI 139 (311)
Q Consensus 66 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 139 (311)
+...-.++...+ .+++++|...|++.++..+ .++..+..+..++ ...++.++|++.+++..+ .+..++..+.
T Consensus 139 ~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCG-GNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHC-TTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHc-cccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 443333333344 5679999999999998753 3455555555553 445777889988887733 2455666555
Q ss_pred HHHH----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 140 SSLA----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 140 ~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+. ..+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+. .+.+..++..+..+|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 5544 3577889999999988763 446778889999999999999999999999864 22345567667666543
Q ss_pred c-------------------CCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh---H
Q 040965 216 A-------------------GLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG---R 271 (311)
Q Consensus 216 ~-------------------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 271 (311)
. +.+++|...+++. ... .+...+..+...+...|++++|...|+++++..|++.. .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2 3456777778776 333 45677888889999999999999999999998877543 2
Q ss_pred HHHHHHH-HhccchhHHHHHHHHHHHHcc
Q 040965 272 YVVLSNI-HAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 272 ~~~l~~~-~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+..++.. +...|++++|...|++..+..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344433 457899999999998887643
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=3e-16 Score=133.78 Aligned_cols=208 Identities=9% Similarity=-0.069 Sum_probs=180.2
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH-HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL-ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
++++.+.++...... +.+...+..+...|...|++ ++|++.|+++.+. +...|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666777777665543 34678889999999999999 9999999998433 577899999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHcc---------ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------CCHH
Q 040965 158 MKEKGLRANEITFVAVLTACARA---------QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--------GLLS 220 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 220 (311)
..+. .|+...+..+...+... |++++|...++++++. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9876 57778899999999999 9999999999999864 233467889999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 221 EAKEFMRSM-PFEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 221 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+|.+.|++. ...| +...|..+...|...|++++|...|+++.+.+|++..++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4455 6678888999999999999999999999999999999999999999999999999876543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.1e-14 Score=111.30 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=126.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcC-CCHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASN-SREKEALVM 154 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~ 154 (311)
.|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.. .+..++..+...+... |++++|.+.
T Consensus 21 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 333444555444444432 22344555566666666777777776666532 2455666777777777 777777777
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 155 FDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 155 ~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
++++.+.+..| +...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777632233 3566777777788888888888888877753 2224566777778888888888888888777 323
Q ss_pred C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 233 P--DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 233 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
| +...+..+...+...|+.+.+..+++.+.+..|+++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3 4455555666677888888888888888888888764443
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=2.9e-15 Score=111.16 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=96.1
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
+..|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3455555556666666666666666655542 224455555566666666666666666665542 1223344555555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
.+...++++.|.+.+++. ...| +...+..+...+...|++++|...|+++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 556666666666666555 2223 33455555566666666666666666666666666666666666666667777776
Q ss_pred HHHHHHHHc
Q 040965 290 DLRKAMVEA 298 (311)
Q Consensus 290 ~~~~~m~~~ 298 (311)
..|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666554
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=3.2e-15 Score=123.25 Aligned_cols=217 Identities=11% Similarity=0.046 Sum_probs=182.9
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC-HHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
+.|++++|+..++++++.. +.+..+|+.+..++...|+ +++|+..|++++.. +...|..+..++...|++++|+.
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4778999999999999876 4467889999999999997 99999999998443 67889999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh-cCCHHHH-----HHHHH
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR-AGLLSEA-----KEFMR 227 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~ 227 (311)
.|+++.+.. +-+...|..+..++...|++++|+..++++++. .+-+...|+.+..++.. .|..++| ++.++
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 999999874 337889999999999999999999999999964 22356789999999998 6665777 47777
Q ss_pred hC-CCCCC-cchHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc---------hhHHHHHHHHH
Q 040965 228 SM-PFEPD-ASVLGALLGACKIHG--AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE---------RWNRATDLRKA 294 (311)
Q Consensus 228 ~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~ 294 (311)
+. ...|+ ...|..+...+...| ++++|...++++ +..|+++.++..++.+|.+.| .+++|.+++++
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 76 45564 467777887888877 689999999998 889999889999999999874 35899999999
Q ss_pred H-HHcc
Q 040965 295 M-VEAG 299 (311)
Q Consensus 295 m-~~~~ 299 (311)
+ .+.+
T Consensus 344 l~~~~D 349 (382)
T 2h6f_A 344 LAKEKD 349 (382)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 8 5543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=2.1e-15 Score=126.33 Aligned_cols=262 Identities=12% Similarity=0.053 Sum_probs=196.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DV----VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|+..|+++.. | +. .+|..+...|...|++++|...+++..+..... .|. ...+..+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 356789999999999999843 2 32 478899999999999999999999987631001 122 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhcc-----CCchHHHHHHHHHHHhhcCC-----------------HHHHHHHHHHcccc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNE-----IVLSVFMGTALIDLYGKVGC-----------------LERAIRVFKSMVIK 130 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 130 (311)
+...|++++|...+++..+.. .+....++..+..+|...|+ +++|+..+++....
T Consensus 136 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 136 ---LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 233777999999999887652 12235688889999999999 99999998876321
Q ss_pred ---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 131 ---------DVCTWNAMISSLASNSREKEALVMFDEMKEKGL---RA--NEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 131 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
...++..+...+...|++++|.+.+++..+... .+ ...++..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345788899999999999999999999875311 11 1237788889999999999999999988753
Q ss_pred CCCc----cchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 197 FEVV----PIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 197 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..-. ....++..+...|...|++++|.+.+++. ... ++ ..++..+...|...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 12467888899999999999999999887 111 11 346777888899999999999999999986
Q ss_pred CCC
Q 040965 265 QPK 267 (311)
Q Consensus 265 ~~~ 267 (311)
.+.
T Consensus 373 ~~~ 375 (411)
T 4a1s_A 373 AXX 375 (411)
T ss_dssp CCH
T ss_pred Hhh
Confidence 654
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=2.9e-15 Score=121.46 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=192.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|...|+++.. | + ...|..+...+...|++++|.+.+++..+..... .|. ...+..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457789999999999999843 2 3 4678899999999999999999999876531001 122 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCC--------------------HHHHHHHHHHc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGC--------------------LERAIRVFKSM 127 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 127 (311)
+...|++++|...+++..+.... ....++..+...|...|+ +++|...+++.
T Consensus 93 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 93 ---LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 23377799999999988764211 124578889999999999 99999998876
Q ss_pred ccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 128 VIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 128 ~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
... ...++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 321 3457888889999999999999999987653 1111 2347888888999999999999999988
Q ss_pred hccCCCcc----chhhHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 194 LGKFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
.+...-.+ ...++..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 75311111 1457788889999999999999999887 11 111 346677888899999999999999999
Q ss_pred HhcCCC
Q 040965 262 LELQPK 267 (311)
Q Consensus 262 ~~~~~~ 267 (311)
.+..+.
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 986654
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.66 E-value=1.4e-14 Score=119.97 Aligned_cols=291 Identities=8% Similarity=-0.021 Sum_probs=196.6
Q ss_pred hhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHH--HhcCCHhHHH---------HHHHHhhcCCCCCCCchHH
Q 040965 5 YVKNGDMDSAILLFENMLK--------RDVVSWTSIINGF--VRNGCFGEAI---------CVFKNMMGNVNLVRPNEAT 65 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~--~~~g~~~~A~---------~~~~~~~~~~~~~~p~~~~ 65 (311)
+.+.+++++|..+++++.+ ++...|..++..- .-.+.+..+. +.++.+........+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 3789999999999998722 1344455554431 1122233333 5566554321000111111
Q ss_pred HHHHHHHhhhhhhcCcchhHHHHHHHHhhccC----C-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc----------
Q 040965 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI----V-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------- 130 (311)
Q Consensus 66 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 130 (311)
+.....+.... ..|++++|...+++..+... + ....++..+..+|...|+++.|...+++...-
T Consensus 102 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 102 YSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 11222222222 37889999999999876421 1 23567888999999999999999999887321
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccc
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPI 202 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 202 (311)
...+++.+..+|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++.++.. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457888999999999999999999987653 2111 23577888899999999999999999988611 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCc---chHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCchhHH
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDA---SVLGALLGACKIHGA---VDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
..++..+...|.+.|++++|.+.+++. ...++. ..+..+...+...++ +++|...+++. ...|.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 567888999999999999999999887 211221 234444445666777 77777777762 2234444577
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHH
Q 040965 273 VVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..++..|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998865
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.3e-15 Score=120.94 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMISSLASNSREKEALVMFDEMKEK------GL 163 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 163 (311)
..++..+..+|...|++++|...++++.. ....++..+...+...|++++|.+.++++.+. +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555566666666666666666665521 13445666666666677777777766666543 21
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-----
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P----- 230 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 230 (311)
.| ....+..+...+...|++++|..+++++.+.. ..+....++..+..+|...|++++|.+.++++ .
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 22 23456666666777777777777776665420 11122345666667777777777777776655 1
Q ss_pred ----CCCCcch-------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 231 ----FEPDASV-------LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 231 ----~~p~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..+.... +..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.+++++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1121111 1112233445667777788888888777888888999999999999999999999988764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=1.7e-14 Score=106.97 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
++.+|..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|...++...... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999999843 367889999999999999999999999988764 3366778888888
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
+...++++.|...+.+.... .+.+...+..+..+|.+.|++++|++.|++. ...| +..++..+...|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998864 2335677888999999999999999999998 4455 557788899999999999999
Q ss_pred HHHHHHHHhcCCCch
Q 040965 255 HEVGRRLLELQPKHC 269 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (311)
...|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=3e-13 Score=123.95 Aligned_cols=235 Identities=11% Similarity=0.087 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++.+|..+..++...|++++|++.|.+. -|...|..+..++.. .|+++++.+.+....+.. +++...
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~---lGkyEEAIeyL~mArk~~--~e~~Id 1170 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANT---SGNWEELVKYLQMARKKA--RESYVE 1170 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhc--cccccc
Confidence 4557777888888888888888887554 144555556654443 555888888887766654 222233
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++
T Consensus 1171 t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 34777788887777544433 3445556667778888888888888888763 36777888888888888
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+.+
T Consensus 1239 ~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1239 AAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8888887763 3457777777888888888888776643 345556678888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcc--chhHHHHHHHH
Q 040965 265 QPKHCGRYVVLSNIHAGL--ERWNRATDLRK 293 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 293 (311)
+|.+...|..|..+|++. ++..++.++|.
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 988888887777777654 45555555554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.3e-13 Score=110.89 Aligned_cols=236 Identities=11% Similarity=0.119 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhc----CCH----hHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhh----hcCcc-------hhH
Q 040965 26 VVSWTSIINGFVRN----GCF----GEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLV----NEGGL-------YLG 85 (311)
Q Consensus 26 ~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~----~~~~~-------~~a 85 (311)
...|...+....+. ++. ++|..+|+++.+ ..|+ ...|..+...+...+ +.|++ ++|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~----~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL----VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 34555555544332 122 566777777766 3343 344554444333221 13444 667
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHh-hHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVC-TWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++..+.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777666621123445666666666667777777777766632 2 222 5666666666667777777777766654
Q ss_pred CCCCcHHHHHHHHHHHH-ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC--
Q 040965 162 GLRANEITFVAVLTACA-RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P---FEPD-- 234 (311)
Q Consensus 162 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-- 234 (311)
. +++...|........ ..|+++.|..+|++.++. .+.+...|..++..+.+.|++++|..+|++. . ..|+
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 2 223333433322211 256677777777666653 1223455666666666667777777776666 2 2332
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
...|..++......|+.+.|..+++++.+..|++
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 3455556666666677777777777776666653
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=8.6e-13 Score=114.25 Aligned_cols=211 Identities=9% Similarity=-0.037 Sum_probs=165.9
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhh-------cCCHH-------HHHHHHHHccc---c-hHhhHHHHHHHHHcC
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGK-------VGCLE-------RAIRVFKSMVI---K-DVCTWNAMISSLASN 145 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 145 (311)
.+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4555666666653 3456777778877775 69987 89999998864 3 578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGLLSEA 222 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 222 (311)
|++++|..+|+++.+. .|+ ...|..++..+.+.|+++.|..+|++..+.. +.+...|...+.. +...|++++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999985 453 3588888888999999999999999998642 2223333332222 3468999999
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh----HHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 223 KEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG----RYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 223 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+..+++++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 4345 4678888888889999999999999999987665543 78788888889999999999999987
Q ss_pred Hcc
Q 040965 297 EAG 299 (311)
Q Consensus 297 ~~~ 299 (311)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.5e-14 Score=106.99 Aligned_cols=167 Identities=14% Similarity=0.002 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 123444444455555555555555555555432 12233445555555555
Q ss_pred cCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|.+..++..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666655555 11 22345556666667777777777777777777777777777777888888888888888887
Q ss_pred HHHHccCCCCCc
Q 040965 294 AMVEAGIRKIPA 305 (311)
Q Consensus 294 ~m~~~~~~~~~~ 305 (311)
+..+........
T Consensus 169 ~~~~~~~~~~~~ 180 (186)
T 3as5_A 169 KANELDEGASVE 180 (186)
T ss_dssp HHHHHHHCCCGG
T ss_pred HHHHcCCCchhh
Confidence 777665444333
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=6.1e-13 Score=106.98 Aligned_cols=149 Identities=10% Similarity=-0.002 Sum_probs=64.8
Q ss_pred cCcchhHHHHHHHHhhccCCchHH-HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHH-HcCCCHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVF-MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSL-ASNSREKEALV 153 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~-~~~~~~~~a~~ 153 (311)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++.... +...|...+... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33455555555555543211 122 4444555555555555555555554321 122222211111 12355555555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+|++..+.. +-+...|..++..+.+.|++++|..+|++.+....++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544431 12344444445555555555555555555544311232 1234444444444555555555555444
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=3.9e-13 Score=113.89 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcC-----CHhHHHHHHHHhhcCC
Q 040965 12 DSAILLFENMLKRDVVSWTSIINGFVRNG-----CFGEAICVFKNMMGNV 56 (311)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~ 56 (311)
++|...|++..+.++..+..+...+...+ ++++|+..|++..+.|
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g 104 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG 104 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555554444445555555444433 5566666666666544
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=8.3e-15 Score=117.69 Aligned_cols=240 Identities=10% Similarity=0.056 Sum_probs=164.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---- 95 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---- 95 (311)
+..++..+...+...|++++|..+|+++.+.... ..|. ...+..+...+ ...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY---RDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999762100 0122 23344444333 2367799999999988775
Q ss_pred --cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 96 --EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 96 --~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+. +....++..+..+|...|++++|...++++.. ....++..+...+...|++++|.++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 33467888999999999999999999998742 14567888999999999999999999998764
Q ss_pred ------CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhh-------HHHHHHHHHhcCCHHH
Q 040965 162 ------GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEH-------YGCVVDLLGRAGLLSE 221 (311)
Q Consensus 162 ------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~-------~~~l~~~~~~~g~~~~ 221 (311)
+..| ...++..+...+...|++++|...++++.+.. ...+.... +..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2233 34678888999999999999999999988531 11121111 2222223334455555
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 222 AKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 222 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
|...++.. ...| +..++..+...|...|++++|...+++++++.|.
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 55556655 2233 3466788888999999999999999999987664
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=3.8e-14 Score=125.83 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=101.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCV 209 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 209 (311)
+..+|+.+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++.++. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34555566666666666666666666655542 113555666666666666666666666666532 33 24556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..+|...|++++|.+.|++. .+.|+ ...+..+...+...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666665 33443 35566666667777777777777777777777776677777777777777777
Q ss_pred HHHHHHHHHH
Q 040965 288 ATDLRKAMVE 297 (311)
Q Consensus 288 A~~~~~~m~~ 297 (311)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.3e-13 Score=114.41 Aligned_cols=259 Identities=11% Similarity=-0.020 Sum_probs=182.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHH-----------HHHHHHhhccCCch--
Q 040965 36 FVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGK-----------QVHGYILRNEIVLS-- 100 (311)
Q Consensus 36 ~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~-- 100 (311)
+.+.+++++|..+++++.+.-.....| ...|-.++..-.... .+.++.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~-~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM-LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 467899999999999986643223233 344444444322111 22244444 66666654321111
Q ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--C---C
Q 040965 101 --VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKG--L---R 164 (311)
Q Consensus 101 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~ 164 (311)
...+......+...|++++|+..+++.... ...++..+...|...|++++|...+++..+.- . .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 112233667788999999999999988332 35678899999999999999999999977531 1 1
Q ss_pred C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-
Q 040965 165 A-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-----FE- 232 (311)
Q Consensus 165 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~- 232 (311)
+ ...++..+...|...|++++|...+++.++...-.+ ...++..+..+|...|++++|.+.+++. . ..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 245788888999999999999999999875311111 1247888999999999999999999887 1 12
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCchhHHHHHHHHHhccch---hHHHHHHHHHH
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ-----PKHCGRYVVLSNIHAGLER---WNRATDLRKAM 295 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m 295 (311)
| ...++..+...+...|++++|...++++.+.. |.....+..+...|...|+ +++|..++++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3 23567778888999999999999999998753 3333346678889999998 77777777654
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=3.9e-12 Score=105.08 Aligned_cols=266 Identities=11% Similarity=-0.067 Sum_probs=178.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH----HHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC---c-
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA----TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV---L- 99 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~- 99 (311)
.+......+...|++++|...+++..... ...+.. .+..+-. .+...|++++|...+++..+.... +
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGE---VLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34455566778899999999999887743 111222 1112211 122367799999998887764211 1
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHccc----------c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--C
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVI----------K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--A 165 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~ 165 (311)
...++..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... +
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 123456778888899999999999887732 1 2345666788888999999999999987754221 1
Q ss_pred --cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCCc--
Q 040965 166 --NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-----CVVDLLGRAGLLSEAKEFMRSM-PFEPDA-- 235 (311)
Q Consensus 166 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 235 (311)
...++..+...+...|++++|...+++.............+. ..+..+...|++++|.+.+++. ...|..
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 235677788888899999999999988764311111111121 2334477899999999999888 222221
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 236 ---SVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 236 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..+..+...+...|++++|...++++.+..+. ...++..+..++...|+.++|...+++....
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 13456667788899999999999988764321 1236667788888999999999988887653
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=2.3e-13 Score=104.42 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=129.0
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...|++.++...+++...+..+..++...|++++|+..|++.... +...|..+..+|...|++++|.+.+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6778888888888887764356666666888888888888888888877332 5667778888888888888888888
Q ss_pred HHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHH
Q 040965 156 DEMKEKGLRANE-------ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 156 ~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
++..+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...+..+..+|...|+. .
T Consensus 100 ~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~~~-----~ 170 (228)
T 4i17_A 100 TEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNGAD-----V 170 (228)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHHHH-----H
Confidence 8877753 2233 45667777778888888888888888753 444 45667777777655433 2
Q ss_pred HHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 226 MRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 226 ~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++++ .. ..+...|.... ....+.+++|...++++.+..|++..+...+...
T Consensus 171 ~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 171 LRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 2222 11 12233333332 3345667888888888888888887666555443
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=1.1e-13 Score=109.41 Aligned_cols=219 Identities=10% Similarity=-0.001 Sum_probs=150.7
Q ss_pred cCcchhHHHHHHHHhhc-------cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRN-------EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMIS 140 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~ 140 (311)
.|++++|...+++.++. ..+....++..+..+|...|++++|+..++++.. ....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 55566666666665542 2233567788889999999999999999988732 14567888889
Q ss_pred HHHcCCCHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhhHH
Q 040965 141 SLASNSREKEALVMFDEMKEK------GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEHYG 207 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 207 (311)
.|...|++++|.+.+++..+. ...| ...++..+...+...|++++|...++++.+.. ..+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999987754 1123 35678888888999999999999998887530 1222356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C---------CCCCcch-HHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCchh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-P---------FEPDASV-LGALLGACKIHGAV------DLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~~~-~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~ 270 (311)
.+..+|...|++++|.+++++. . ..+.... +..+...+...+.. ..+...++......|....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8889999999999999998776 1 2333333 33333333333332 2223333332223455566
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++..++.+|...|++++|..++++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999998765
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=2.7e-13 Score=104.03 Aligned_cols=194 Identities=12% Similarity=-0.020 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc----chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI----KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
++..+......+...|++++|+..|++... ++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 456777788888888888888888887733 556666668888888888888888888887763 225677888888
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccch-----hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIM-----EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACK 246 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~ 246 (311)
.+...|++++|...+++.++...-.+.. ..|..+...+...|++++|.+.|++. ...|+ ...+..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 8888888888888888887542111111 45677777788888888888888877 55665 345555555554
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
. .+...++++....+.+...|.... ....+.+++|...+++..+..+.
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 3 344556666666666554554433 34557789999999999887544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=1.6e-12 Score=107.46 Aligned_cols=262 Identities=10% Similarity=-0.027 Sum_probs=181.3
Q ss_pred hhhhcCChHHHHHHHHHhcc--c--cH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhh
Q 040965 4 GYVKNGDMDSAILLFENMLK--R--DV----VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCA 74 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~ 74 (311)
.+...|++++|...+++... + +. .+++.+...+...|++++|.+.+++..+..+ -.++... ...+.....
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-QHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 45678999999999998732 1 22 2577788889999999999999999876321 0112211 111111111
Q ss_pred hhhhcCcchhHHHHHHHHhhcc----CC--c-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHhhHHHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNE----IV--L-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVCTWNAMI 139 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~ 139 (311)
.....|++++|...+++..+.. .+ | ...++..+...+...|++++|...+++.... ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 2233788999999999887642 11 2 3456677889999999999999999887321 235677888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHccccHHHHHHHHHHhhccCCCcc--chhhHHHHHH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRAN--EITFV----AVLTACARAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVD 211 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 211 (311)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++........+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 899999999999999999875421211 11111 233447789999999999999875421111 1224567788
Q ss_pred HHHhcCCHHHHHHHHHhC-------CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 212 LLGRAGLLSEAKEFMRSM-------PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
.+...|++++|.+.+++. +..++. ..+..+...+...|+.++|...++++.+..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999876 111122 2455566778899999999999999987543
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=1.7e-12 Score=119.13 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=196.7
Q ss_pred hhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
.++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.|....+.. -.|...+ .+..++++. +++
T Consensus 1113 KAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt--~LafaYAKl---~rl 1183 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET--ELIFALAKT---NRL 1183 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH--HHHHHHHhh---cCH
Confidence 4677889999999999764 678889999999999999999999999988744 2232333 355555554 446
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
++..... + .++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 6544332 2 345566677999999999999999999985 58999999999999999999999976
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGA 240 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 240 (311)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 36689999999999999999999876643 224446889999999999999999999887 55543 345555
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHhcCC-----CchhHHHHHHHHHhccchhHHHHH
Q 040965 241 LLGACKI--HGAVDLCHEVGRRLLELQP-----KHCGRYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 241 l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 290 (311)
|...+++ .++..++.+.|..-....| .....|..+...|.+.|++++|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5555544 4566666666665554444 455689999999999999999984
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.6e-13 Score=117.06 Aligned_cols=180 Identities=8% Similarity=-0.032 Sum_probs=157.0
Q ss_pred HHHHHHHHHHcc---cchHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHH
Q 040965 117 LERAIRVFKSMV---IKDVCTWNAMISSLASNSRE-KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192 (311)
Q Consensus 117 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (311)
+++++..+++.. ..+...+..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666666552 23678899999999999999 99999999998873 33678999999999999999999999999
Q ss_pred hhccCCCccchhhHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc--------CChhH
Q 040965 193 MLGKFEVVPIMEHYGCVVDLLGRA---------GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH--------GAVDL 253 (311)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~ 253 (311)
+++. .|+...+..+...|... |++++|.+.+++. ...| +...|..+...|... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9954 67778899999999999 9999999999998 4445 467788888888888 99999
Q ss_pred HHHHHHHHHhcCC---CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 254 CHEVGRRLLELQP---KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 254 a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|...|+++++.+| .++.+|..++.+|...|++++|...|++..+...
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 8889999999999999999999999999988654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=5.4e-13 Score=98.50 Aligned_cols=166 Identities=11% Similarity=0.004 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
...+..+...+...|++++|...++++... +..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999988543 66788888999999999999999999988763 34677888888999
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998864 2345677888899999999999999999987 3334 5577888888999999999999
Q ss_pred HHHHHHHhcCCCch
Q 040965 256 EVGRRLLELQPKHC 269 (311)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (311)
..++++.+..|++.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999998877764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=1e-11 Score=102.87 Aligned_cols=232 Identities=6% Similarity=-0.022 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccC-----Cc
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-----VL 99 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 99 (311)
|......+...|++++|+..|+++.+... ..++. ..+..+-.++ ...|+++.|...+++..+... .+
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~y---~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELP-FVSDDIEKAEFHFKVAEAY---YHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHH---HHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 44556677899999999999999987432 11332 2333333322 236779999999988876421 11
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA 165 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~ 165 (311)
...+++.+..+|...|++++|++.|++...- ...++..+..+|...|++++|.+.+++..+. +.+.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 3567888999999999999999999887431 2457888999999999999999999998761 2233
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCC---ccchhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCc-chH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSMPFEPDA-SVL 238 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~ 238 (311)
...++..+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|...+++.+..|+. ..+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence 4678888999999999999999999998764222 1123345666677777888 99999999997544443 455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..+...|...|++++|...|+++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67778899999999999999998763
No 82
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.3e-13 Score=116.83 Aligned_cols=279 Identities=11% Similarity=0.042 Sum_probs=182.5
Q ss_pred hhhhhcCChHHHHHHHHHhccc-cHHHHHHHHHHHHhcCCH---hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh-
Q 040965 3 DGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCF---GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV- 77 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~- 77 (311)
..+.+.|++++|..+|++..++ ++.++..+...|...|+. ++|.+.|++..+ ..|+ .+..+-..+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~--A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPR--AQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------CHHHHHHHHHTC--
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHH--HHHHHHHHHHhCCC
Confidence 4567889999999999998554 566777788888888888 999999999975 3233 3333322111211
Q ss_pred -hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh-----------------------------------cC----CH
Q 040965 78 -NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK-----------------------------------VG----CL 117 (311)
Q Consensus 78 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~g----~~ 117 (311)
..++.++|...|++..+.|.+. .+..|...|.. .+ +.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 1135889999999888765322 33334444433 33 23
Q ss_pred HHHHHHHHHcccchHhhHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc----ccHHHHHHHH
Q 040965 118 ERAIRVFKSMVIKDVCTWNAMISSLASNS---REKEALVMFDEMKEKGLRANEITFVAVLTACARA----QLVELGLELF 190 (311)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 190 (311)
+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 34444555555556778888999999999 9999999999998887 45666666777777655 6899999999
Q ss_pred HHhhccCCCccchhhHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDL-L--GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-----AVDLCHEVGRRLL 262 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~ 262 (311)
++.. . + +...+..|... | ...+++++|.++|++.-...+...+..|...|. .| ++++|..+|+++.
T Consensus 241 ~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9987 2 3 34466677766 4 468999999999999822336677777777776 56 9999999999988
Q ss_pred hcCCCchhHHHHHHHHHhc----cchhHHHHHHHHHHHHccC
Q 040965 263 ELQPKHCGRYVVLSNIHAG----LERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 300 (311)
|.++.++..|+..|.. ..++++|...|++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777899999988887 4499999999999887764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=7.6e-13 Score=117.53 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=141.9
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
-+...++.|..+|.+.|++++|++.|++..+ | +..+|..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3578899999999999999999999998843 3 67889999999999999999999999998863 235788999999
Q ss_pred HHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChh
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVD 252 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 252 (311)
++...|++++|++.|++.++. .| +...|..+..+|...|++++|++.|++. .+.|+ ...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999854 44 4678999999999999999999999998 55664 477888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 040965 253 LCHEVGRRLLELQP 266 (311)
Q Consensus 253 ~a~~~~~~~~~~~~ 266 (311)
+|.+.++++++..|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=1.1e-12 Score=104.56 Aligned_cols=200 Identities=8% Similarity=-0.075 Sum_probs=141.5
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
+++|...+++. +..|...|++++|...|.+...- ...+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777655 45677889999999888877322 2467888899999999999999
Q ss_pred HHHHHHHHc----CCCC-cHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHH
Q 040965 153 VMFDEMKEK----GLRA-NEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 153 ~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 222 (311)
..+++..+. |-.+ -..++..+...|... |++++|+..|++.++...-..+ ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999887653 2111 135778888888886 9999999999988753110001 34678888999999999999
Q ss_pred HHHHHhC-CCCCCcc--------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh-----HHHHHHHHHh--ccchhH
Q 040965 223 KEFMRSM-PFEPDAS--------VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG-----RYVVLSNIHA--GLERWN 286 (311)
Q Consensus 223 ~~~~~~~-~~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~ 286 (311)
.+.|++. ...|+.. .+..+..++...|++++|...+++++++.|.... .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887 3334321 3566677788899999999999999988887543 2344556664 456788
Q ss_pred HHHHHHHHHH
Q 040965 287 RATDLRKAMV 296 (311)
Q Consensus 287 ~A~~~~~~m~ 296 (311)
+|...|+++.
T Consensus 258 ~A~~~~~~~~ 267 (292)
T 1qqe_A 258 EHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHhccCC
Confidence 8888886553
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.47 E-value=5.7e-12 Score=98.76 Aligned_cols=186 Identities=14% Similarity=0.030 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-C-CcHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---D---VCTWNAMISSLASNSREKEALVMFDEMKEKGL-R-ANEITFV 171 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~~ 171 (311)
+...+..+...+.+.|++++|+..|+++... + ...+..+..+|.+.|++++|...|++..+... . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455566677777888888888888877433 2 45677777788888888888888888776521 1 1245566
Q ss_pred HHHHHHHc--------cccHHHHHHHHHHhhccCCCccc-hhhH-----------------HHHHHHHHhcCCHHHHHHH
Q 040965 172 AVLTACAR--------AQLVELGLELFHSMLGKFEVVPI-MEHY-----------------GCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 172 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 225 (311)
.+..++.. .|++++|...|+++++. .|+ .... ..+...|.+.|++++|...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66667777 78888888888887754 222 2222 4557788888999999998
Q ss_pred HHhC-CCCCCc----chHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCchh---HHHHHHHHHhccchhHH
Q 040965 226 MRSM-PFEPDA----SVLGALLGACKIH----------GAVDLCHEVGRRLLELQPKHCG---RYVVLSNIHAGLERWNR 287 (311)
Q Consensus 226 ~~~~-~~~p~~----~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~ 287 (311)
|+++ ...|+. ..+..+..+|... |++++|...++++++..|+++. +...+...+.+.+++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 8887 334442 3456666667655 8889999999999988888753 34445555555555554
Q ss_pred H
Q 040965 288 A 288 (311)
Q Consensus 288 A 288 (311)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 4
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.46 E-value=1e-11 Score=98.98 Aligned_cols=213 Identities=9% Similarity=-0.082 Sum_probs=152.2
Q ss_pred CHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCch-HHHHHHHHHHHhhcC
Q 040965 41 CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVLS-VFMGTALIDLYGKVG 115 (311)
Q Consensus 41 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 115 (311)
++++|...|++.-. . +...|++++|...+++..+. |.+++ ..+|+.+..+|.+.|
T Consensus 32 ~~~~A~~~~~~a~~-----------------~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQAAT-----------------I---YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHHHH-----------------H---HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHH-----------------H---HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC
Confidence 58888888887621 1 11266788998888887664 22222 578889999999999
Q ss_pred CHHHHHHHHHHcccc---------hHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCC---CC-c-HHHHHHHHHHHHcc
Q 040965 116 CLERAIRVFKSMVIK---------DVCTWNAMISSLASN-SREKEALVMFDEMKEKGL---RA-N-EITFVAVLTACARA 180 (311)
Q Consensus 116 ~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~---~~-~-~~~~~~l~~~~~~~ 180 (311)
++++|+..+++...- -..+++.+...|... |++++|+..|++..+... .+ . ..++..+...+...
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 999999999887432 145788899999996 999999999999876411 11 1 35688889999999
Q ss_pred ccHHHHHHHHHHhhccCCCccch-----hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc------hHHHHHHHHH--
Q 040965 181 QLVELGLELFHSMLGKFEVVPIM-----EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS------VLGALLGACK-- 246 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~-- 246 (311)
|++++|+..|+++.+...-.+.. ..+..+..++...|++++|...|++. .+.|+.. .+..++.++.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999999998652111221 15677888899999999999999998 5556532 2334455554
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
..+++++|...|+++...+|.....+.
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 356788888888888777776543333
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=8.7e-11 Score=92.55 Aligned_cols=236 Identities=10% Similarity=0.083 Sum_probs=156.2
Q ss_pred hcCChHHHHHHHHHhcccc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 7 KNGDMDSAILLFENMLKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
-.|++..++.-...+...+ ...-.-+.++|...|++... .. -.|....+..+. ... .++ +
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~--~~~~~~a~~~la----~~~-~~~---a 85 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP--TSKLGKVLDLYV----QFL-DTK---N 85 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS--SSTTHHHHHHHH----HHH-TTT---C
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC--CCHHHHHHHHHH----HHh-ccc---H
Confidence 3577777777554442222 22333456778888877642 11 334433333322 333 211 6
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
...+++....+ +++..++..+..++...|++++|++++.+.+.. +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 344455567888888999999999999887433 556777888899999999999999999877
Q ss_pred cCCCC-----cHHHHHHHHHH--HHccc--cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 161 KGLRA-----NEITFVAVLTA--CARAQ--LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 161 ~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
. .| +..+...++.+ ....| +...|..+|+++.+. .|+..+-..+..++...|++++|.+.++.+ .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 56 35555666655 33334 899999999998754 344333344445888899999999998765 2
Q ss_pred C----------CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 231 F----------EP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 231 ~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
. .| |..+...++......|+ +|.++++++.+..|+++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 14 44555466666666776 88899999999999887
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.44 E-value=2.3e-11 Score=93.13 Aligned_cols=185 Identities=11% Similarity=-0.006 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc--ch----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc-HHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI--KD----VCTWNAMISSLASNSREKEALVMFDEMKEKGLR-AN-EITFVA 172 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~-~~~~~~ 172 (311)
...+..+...+.+.|++++|+..|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+.... +. ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555677788889999999999998853 32 346777888899999999999999998876322 11 124444
Q ss_pred HHHHHHc------------------cccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 173 VLTACAR------------------AQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 173 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+..++.. .|+.++|...|+++++. .|+. ..+......- .......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~~--------- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRLA--------- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHHH---------
Confidence 5555543 45677777777777653 2322 1221111100 0000000
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
.....+...+...|++++|...|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+....
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112455678899999999999999999998875 5688999999999999999999999988766543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=1.2e-11 Score=96.89 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=139.3
Q ss_pred cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hh
Q 040965 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN---EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-ME 204 (311)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 204 (311)
..+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++++...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466777788889999999999999999998863 223 678888899999999999999999999875222222 45
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCCc-chH-----------------HHHHHHHHhcCChhHHHHH
Q 040965 205 HYGCVVDLLGR--------AGLLSEAKEFMRSM-PFEPDA-SVL-----------------GALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 205 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~a~~~ 257 (311)
.+..+..++.. .|++++|.+.|+++ ...|+. ... ..+...|...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67778888888 99999999999998 334543 333 3456778999999999999
Q ss_pred HHHHHhcCCCc---hhHHHHHHHHHhcc----------chhHHHHHHHHHHHHccCC
Q 040965 258 GRRLLELQPKH---CGRYVVLSNIHAGL----------ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 258 ~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 301 (311)
|+++++..|++ ..++..++.+|... |++++|...|+++.+..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 99999998884 45788899999876 9999999999999886543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=7.5e-11 Score=92.90 Aligned_cols=241 Identities=9% Similarity=-0.023 Sum_probs=167.4
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
++-..-.|++..++.-...+.. ..++. .-....+++..+++ +... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~-~~~~~~Rs~iAlg~---~~~~---------~~~~~~~~a~~~la~~~- 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK----VTDNT-LLFYKAKTLLALGQ---YQSQ---------DPTSKLGKVLDLYVQFL- 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC----CCCHH-HHHHHHHHHHHTTC---CCCC---------CSSSTTHHHHHHHHHHH-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc----cchHH-HHHHHHHHHHHcCC---CccC---------CCCCHHHHHHHHHHHHh-
Confidence 3445667999988884444322 22332 22223344444442 3321 12234444444444443
Q ss_pred hcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccccHHHHHH
Q 040965 113 KVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
..+ |+..|++... ++..++..+..++...|++++|++++.+....+.. -+...+...+..+.+.|+.+.|.+
T Consensus 82 ~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 82 DTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp TTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 322 7788887753 45566678889999999999999999998766531 366788888999999999999999
Q ss_pred HHHHhhccCCCcc-----chhhHHHHHHHH--HhcC--CHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 040965 189 LFHSMLGKFEVVP-----IMEHYGCVVDLL--GRAG--LLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 189 ~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
.+++|.+ ..| +..+...|+.++ ...| ++++|..+|+++ ...|+..+-..++.++...|++++|...+
T Consensus 158 ~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999974 466 345666666663 3334 999999999999 44565334445555889999999999999
Q ss_pred HHHHhc----------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLEL----------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.+.+. +|+++.++..++......|+ +|.++++++.+..+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 988765 58898888888777777786 89999999988654
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=1.6e-11 Score=96.84 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=147.4
Q ss_pred hhhcCChHHHHHHHHHhcc----------c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCc-hHHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK----------R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPN-EATYVS 68 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~-~~~~~~ 68 (311)
....|++++|+..|++... | ...++..+...|...|++++|+..++++.+.... -.|. ...+..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456788888888877732 1 3568899999999999999999999998763100 1232 233444
Q ss_pred HHHHhhhhhhcCcchhHHHHHHHHhhcc-------CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------
Q 040965 69 VLSSCAGLVNEGGLYLGKQVHGYILRNE-------IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK----------- 130 (311)
Q Consensus 69 ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 130 (311)
+...+ ...|++++|...+++..+.. .+....++..+..+|...|++++|...++++...
T Consensus 91 l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 91 LAVLY---GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHH---HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHH---HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 44333 33777999999999887751 1334678888999999999999999999887322
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCCc-HHHHHHHHHHHHcccc------HHHHHHHHHHhhcc
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK-------GLRAN-EITFVAVLTACARAQL------VELGLELFHSMLGK 196 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~ 196 (311)
...++..+...+...|++++|...+++..+. ...+. ...+..+.......+. +..+...++....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 246 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV- 246 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-
Confidence 3567888999999999999999999998753 11222 2233333333333222 3333333333322
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+....++..+...|...|++++|.+++++.
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12334567888999999999999999999875
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=1.6e-11 Score=85.37 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=79.5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHh
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKI 247 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 247 (311)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++ ... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555555666666665555532 1223344555555566666666666666555 212 233455566666777
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...++++.+..|.+..++..++.++.+.|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777777766677777777777788888887777776654
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=7.3e-12 Score=111.44 Aligned_cols=168 Identities=10% Similarity=-0.050 Sum_probs=142.8
Q ss_pred hhcCCHHHHHHHHHHcc-----------cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 112 GKVGCLERAIRVFKSMV-----------IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 112 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
...|++++|++.+++.. ..+...+..+..++...|++++|++.|++..+.. +-+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999887 3366788889999999999999999999998763 33678889999999999
Q ss_pred ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
|++++|...|+++++. .| +...+..+..+|.+.|++++ .+.|++. ...| +...+..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999864 44 45678899999999999999 9999988 4455 457788888999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|+++.+.+|.+..++..++.++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999998899999999877554
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.36 E-value=5.1e-11 Score=94.69 Aligned_cols=177 Identities=11% Similarity=-0.019 Sum_probs=141.9
Q ss_pred HHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3455556666666677778888899999999999999999998873 336778888999999999999999999998754
Q ss_pred CCCccchhhHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--hhH
Q 040965 197 FEVVPIMEHYGC-VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH--CGR 271 (311)
Q Consensus 197 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 271 (311)
.|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|...|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455433322 233466778888888888887 4445 55778888889999999999999999999999987 778
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..++..+...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=5.2e-11 Score=82.72 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=89.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566667777777777777777776653 235566666777777777777777777777653 123445666677777
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 214 GRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777776 2223 4556666777777888888888888887777664
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=8.4e-11 Score=88.78 Aligned_cols=127 Identities=8% Similarity=-0.016 Sum_probs=96.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++. .| +..++..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988873 336788899999999999999999999999864 44 466788888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 217 GL--LSEAKEFMRSMPFEPDA--SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 217 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
|+ ...+...++... .|+. ..+.....++...|++++|...|+++++..|++.
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 54 445666676663 3333 2334445566778999999999999999999753
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.32 E-value=5.3e-12 Score=90.13 Aligned_cols=142 Identities=11% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
...+...|++++|++.++..... .| +...+..+...|.+.|++++|+..|++.++. .+-+..+|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445556666666666654432 22 2334455666677777777777777776643 1224556777777777777
Q ss_pred CHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHH-HHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHE-VGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
++++|...|++. .+.|+ ...+..+...|...|++++|.. +++++++++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777776 44453 4567777777888888776554 4588888888888888777777776664
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.30 E-value=4.6e-11 Score=104.33 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHH
Q 040965 114 VGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (311)
.|++++|++.++++... +...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999888433 56788889999999999999999999988763 336788888999999999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CChhHHHHHHHHHHhcC
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH---GAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 265 (311)
++.++. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2334678888999999999999999999988 4445 456778888888888 99999999999999999
Q ss_pred CCchhHHHHHH
Q 040965 266 PKHCGRYVVLS 276 (311)
Q Consensus 266 ~~~~~~~~~l~ 276 (311)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776665
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=2.8e-10 Score=86.18 Aligned_cols=178 Identities=7% Similarity=-0.114 Sum_probs=116.1
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHcCC----CHHHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLASNS----REKEALVMFDE 157 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 157 (311)
.+|.+.|++..+.| ++..+..+...|...+++++|+..|++.... ++..+..+...|.. + ++++|.++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 45677777777665 4556667777787788888888888877544 56667777777776 5 78888888887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 040965 158 MKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGR----AGLLSEAKEFMRS 228 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 228 (311)
..+.| +...+..+...|.. .+++++|..+|++..+. +.. .++..+..|...|.. .+++++|.++|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 76654 45566666666665 66777888888777754 221 124566667777766 5667777777776
Q ss_pred C-CCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCCCc
Q 040965 229 M-PFEPDASVLGALLGACKIH-G-----AVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 229 ~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~ 268 (311)
. ...++...+..|...|..- | ++++|..+|+++.+.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 2224445555555555432 2 6677777777766665433
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=6.7e-10 Score=84.05 Aligned_cols=173 Identities=8% Similarity=-0.085 Sum_probs=129.5
Q ss_pred HHHHHHHHccc-chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc----cHHHHHHHHHHh
Q 040965 119 RAIRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ----LVELGLELFHSM 193 (311)
Q Consensus 119 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 193 (311)
+|++.|++..+ .++.++..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 35556665543 367778888888888889999999998888765 45666777777776 6 888999998888
Q ss_pred hccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHh----cCChhHHHHHHHHH
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKI----HGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 261 (311)
.+. + +...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .+++++|..+|+++
T Consensus 80 ~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 654 3 44567777777776 78889999988887 43342 6777777777777 77888999999988
Q ss_pred HhcCCCchhHHHHHHHHHhcc-c-----hhHHHHHHHHHHHHccC
Q 040965 262 LELQPKHCGRYVVLSNIHAGL-E-----RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 300 (311)
.+. |.++.++..|..+|... | ++++|...|++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 877 44455777888887653 3 78889998888887764
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=6.1e-11 Score=95.23 Aligned_cols=220 Identities=11% Similarity=-0.021 Sum_probs=149.5
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|++++|.+++++..+.. +.. + ... .++++.|...|.+. ...|...|++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~----~~~-----~----~~~--~~~~~~A~~~~~~a---------------~~~~~~~g~~ 52 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL----KTS-----F----MKW--KPDYDSAASEYAKA---------------AVAFKNAKQL 52 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH----CCC-----S----SSC--SCCHHHHHHHHHHH---------------HHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHHHc----ccc-----c----cCC--CCCHHHHHHHHHHH---------------HHHHHHcCCH
Confidence 4577888888888887643 211 0 010 34466666666543 5567788999
Q ss_pred HHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHccccH
Q 040965 118 ERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKG---LRAN--EITFVAVLTACARAQLV 183 (311)
Q Consensus 118 ~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~~l~~~~~~~~~~ 183 (311)
++|...|.+...- -..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++
T Consensus 53 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 9999888877322 24578888889999999999999998876431 1222 3567788888888 999
Q ss_pred HHHHHHHHHhhccCC---Ccc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCCh
Q 040965 184 ELGLELFHSMLGKFE---VVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAV 251 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~ 251 (311)
++|+..|++.++... ..+ ...++..+...|.+.|++++|.+.|++. .+. ++ ...+..+...+...|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 999999998875311 111 1456788889999999999999999887 211 11 12455556667778999
Q ss_pred hHHHHHHHHHHhcCCCchh-----HHHHHHHHHhccchhHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCG-----RYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 290 (311)
++|...|++++ ..|.... ....++.++ ..|+.+.+..
T Consensus 212 ~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999 8886432 233455555 4555555544
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=4.8e-10 Score=85.72 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=119.4
Q ss_pred hcCcchhHHHHHHHHhhccCCc--hHHHHHHHHHHHhhcCCHHHHHHHHHHccc--ch-H---hhHHHHHHHHHc-----
Q 040965 78 NEGGLYLGKQVHGYILRNEIVL--SVFMGTALIDLYGKVGCLERAIRVFKSMVI--KD-V---CTWNAMISSLAS----- 144 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~----- 144 (311)
+.|++++|...|+++++..+.. ....+..+..+|.+.|++++|+..|+++.. |+ . .++..+..++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 4788999999999999864322 245777889999999999999999999844 32 1 245555655553
Q ss_pred -------------CCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 145 -------------NSREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 145 -------------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
.|++++|...|+++.+. .|+ ...+..... .+. +...+. .....+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~~---------~~~~~~a 154 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRLA---------KYEYSVA 154 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHHH---------HHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHHH---------HHHHHHH
Confidence 68999999999999876 343 222222111 000 001110 1123456
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..|.+.|++++|...|+++ ...|+. ..+..+..++.+.|++++|...++.+....|++.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 7788899999999999887 444553 3566777888999999999999998888877754
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=1.7e-10 Score=100.69 Aligned_cols=152 Identities=9% Similarity=-0.089 Sum_probs=107.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|++.+++.... +...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356888999998888764 335678888889999999999999999888433 5678888889999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~ 231 (311)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++... |++++|.+.+++. ..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988763 336778888888999999999999999998864 223456788888888888 9999999998887 33
Q ss_pred CCC
Q 040965 232 EPD 234 (311)
Q Consensus 232 ~p~ 234 (311)
.|+
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 343
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=2.9e-11 Score=86.28 Aligned_cols=126 Identities=12% Similarity=-0.021 Sum_probs=105.2
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 249 (311)
|...+...|++++|+..+...... .| +...+..+...|.+.|++++|.+.|++. .+.| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667889999999999998753 44 4566778999999999999999999998 5556 5578888889999999
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH-HHHHHHccCC
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL-RKAMVEAGIR 301 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~ 301 (311)
++++|...|+++++.+|+++.++..++.+|.+.|++++|.+. +++..+..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999887765 5887776543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=5.1e-11 Score=87.44 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..+...+.+.|++++|+..|+++... +...+..+...+...|++++|...+++...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34455555566666666666655322 344555555555566666666666555443
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=2.6e-10 Score=101.49 Aligned_cols=167 Identities=8% Similarity=-0.095 Sum_probs=136.1
Q ss_pred cCcchhHHHHHHHHh--------hccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC
Q 040965 79 EGGLYLGKQVHGYIL--------RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSR 147 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 147 (311)
.|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|++.|+++.+. +...|..+..++...|+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence 778999999999998 432 445678888999999999999999999998543 67789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++|.+.|++..+.. +-+...+..+..++.+.|++++ ...|+++++. .+.+...|..+..++.+.|++++|.+.|+
T Consensus 483 ~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 483 YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998873 2356788899999999999999 9999999864 22345788999999999999999999999
Q ss_pred hC-CCCCCc-chHHHHHHHHHhcCC
Q 040965 228 SM-PFEPDA-SVLGALLGACKIHGA 250 (311)
Q Consensus 228 ~~-~~~p~~-~~~~~l~~~~~~~g~ 250 (311)
+. ...|+. ..+..+..++...++
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 98 667764 566666666655444
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.24 E-value=1.4e-09 Score=86.60 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cccc--h
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-----ITFVAVLTACARAQLVELGLELFHSMLGKFE--VVPI--M 203 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 203 (311)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++.++... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777888888888888777664322111 2233455556777888888888887764311 1111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------c
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------H 268 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~ 268 (311)
.+++.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888888776 11222 146677777888888888888888888764322 1
Q ss_pred hhHHHHHHHHHhccchhHHH-HHHHHHHH
Q 040965 269 CGRYVVLSNIHAGLERWNRA-TDLRKAMV 296 (311)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 296 (311)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45778888888888888888 66676654
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=6.3e-10 Score=83.92 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++..+......+...|++++|+..|++..+ ..|+......... ..+. ........
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~----~~~~-----------------~~~~~~~~ 57 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTN----VDKN-----------------SEISSKLA 57 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHH----SCTT-----------------SHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhh----hcch-----------------hhhhHHHH
Confidence 344556667788888999999999999887 5566543222211 0000 01123334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
+.+..+|.+.|++++|+..|++... | +...+..+..++...|++++|...|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 5688899999999999999998843 3 67788899999999999999999999998863 336778888888876665
Q ss_pred c--HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 182 L--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 182 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
+ .+.+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4 445566666654 23344334555666777889999999999987 7778765444443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=2.9e-10 Score=83.40 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=80.9
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.+.|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+ ..|+. .+..+...+.... .+
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~-~~~~~~~~~~~~~-~~ 88 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDN-SYKSLIAKLELHQ-QA 88 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCH-HHHHHHHHHHHHH-HH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCCh-HHHHHHHHHHHHh-hc
Confidence 45677778888887777643 2 556777777777778888888877777765 33432 2222221111111 11
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch-----HhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-----VCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
....+...+++.++.. +.+...+..+..++...|++++|...|+++...+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1233455555555543 2234555555555666666666666655553221 234555555555555555555555
Q ss_pred HHH
Q 040965 156 DEM 158 (311)
Q Consensus 156 ~~m 158 (311)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.20 E-value=1.5e-09 Score=81.91 Aligned_cols=132 Identities=8% Similarity=-0.033 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.+..+...+...|++++|+..|++...++...|..+..++...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345567778888899999999988887788888888888888899999999888887763 3366778888888888889
Q ss_pred HHHHHHHHHHhhccCCC-------------cc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 183 VELGLELFHSMLGKFEV-------------VP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+++|...|+++.+...- .| ....+..+..+|...|++++|.+.|++. ...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99998888888764111 11 1245666666777777777777777666 444543
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.19 E-value=3.3e-09 Score=84.46 Aligned_cols=161 Identities=11% Similarity=-0.011 Sum_probs=114.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcH----HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHH
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGL-RANE----ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYG 207 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 207 (311)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...++++++...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677788888888888888776421 2222 12334666677778889999988888763111222 23578
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHH
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-----PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRY 272 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~ 272 (311)
.+...|...|++++|.+.|+++ ....+ ..++..+...|...|++++|...++++++..+. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888999999988888776 11111 136677788899999999999999998874322 25688
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHH
Q 040965 273 VVLSNIHAGLER-WNRATDLRKAMVE 297 (311)
Q Consensus 273 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 297 (311)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999888764
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=7.9e-10 Score=87.80 Aligned_cols=162 Identities=9% Similarity=-0.041 Sum_probs=131.9
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH-HHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF-VAV 173 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l 173 (311)
+.+...+..+...+.+.|++++|+..|+++.. | +...+..+...+.+.|++++|...++++... .|+.... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 55667778889999999999999999999843 3 6678899999999999999999999998765 3444333 333
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcC
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKIHG 249 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g 249 (311)
...+...++.+.|...+++.... .+.+...+..+...|...|++++|.+.|+++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33477888889999999998864 2345678899999999999999999999998 44554 567888999999999
Q ss_pred ChhHHHHHHHHHHh
Q 040965 250 AVDLCHEVGRRLLE 263 (311)
Q Consensus 250 ~~~~a~~~~~~~~~ 263 (311)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.17 E-value=4.1e-10 Score=89.15 Aligned_cols=192 Identities=8% Similarity=-0.075 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
+...+..+...+.+.|++++|+..|++... | +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999998843 3 67788889999999999999999999988763 3367788888999
Q ss_pred HHccccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
+...|++++|...|++..+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 99999999999999998753 3321 122222222222111111111 2222333344443333 333 378999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcc-chhHHHHHHHHHHHHc
Q 040965 256 EVGRRLLELQPKHCGRYVVLSNIHAGL-ERWNRATDLRKAMVEA 298 (311)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 298 (311)
+.++++.+.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998876666777667666 7789999999887653
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=2.3e-08 Score=79.39 Aligned_cols=211 Identities=10% Similarity=0.075 Sum_probs=115.3
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC--CHHHHHHHHHHcccc---hHhhHHHHHHHH----HcC---CCHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--CLERAIRVFKSMVIK---DVCTWNAMISSL----ASN---SREKE 150 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~~~ 150 (311)
++|+++.+.++... +-+..+|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45666666666554 223445555555555555 666666666666332 233343333222 233 56666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH--HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC------HHHH
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVE--LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL------LSEA 222 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 222 (311)
++++++++.+.. +-+..+|+.-.-.+.+.|.++ +++++++++++. .+-|...|+.-...+...+. ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666553 225555555555555556555 666666666643 12244455544444445554 6666
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCCh-hHHHHHHHHHHhcC---CCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 223 KEFMRSM-PFEP-DASVLGALLGACKIHGAV-DLCHEVGRRLLELQ---PKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 223 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++.++++ ...| |...|+.+...+.+.|+. +.+..+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666655 2233 445555555555555553 33445555555544 5555566666666666666666776666665
Q ss_pred H
Q 040965 297 E 297 (311)
Q Consensus 297 ~ 297 (311)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=5.6e-09 Score=83.73 Aligned_cols=127 Identities=7% Similarity=-0.032 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NE 167 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 167 (311)
.+|+.+..+|.+.|++++|+..|++...- -..++..+...|.. |++++|++.|++..+. +..+ ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 34555555555555555555555544211 12345555555555 6666666666655432 1000 12
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.++..+...+...|++++|+..|++.++.. +..+. ...+..++.++...|++++|.+.|++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566666666666666666555321 11111 124445555555566666666666554
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.16 E-value=2.2e-09 Score=81.02 Aligned_cols=131 Identities=9% Similarity=-0.100 Sum_probs=110.0
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
...+..+...+...|++++|.+.|++. +.|+...+..+...+...|++++|...+++.++. .+.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 344566788888999999999999876 3668889999999999999999999999999864 2335678889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-c----------------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPD-A----------------SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~-~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+|...|++++|.+.|++. ...|+ . ..+..+...+...|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999887 32332 2 567778888999999999999999999999876
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=6.2e-08 Score=76.96 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=170.2
Q ss_pred HHhcCCH-hHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH--
Q 040965 36 FVRNGCF-GEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111 (311)
Q Consensus 36 ~~~~g~~-~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 111 (311)
..+.|.+ ++|+++++.++. +.|+..| |+.--.+...++ ..+++++++.++.++...+ .+..+|+.-..++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~-~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 42 LMKAEEYSERALHITELGIN----ELASHYTIWIYRFNILKNLP-NRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHH
Confidence 3344444 689999999988 6677655 333332222222 0369999999999998763 3555665554444
Q ss_pred --hhc---CCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 112 --GKV---GCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK--EALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 112 --~~~---g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
... +++++++++++++... +..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 444 7899999999998544 5567777677777788888 99999999998753 37778877777777777
Q ss_pred c------HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCcchHHHHHHHHHhcC
Q 040965 182 L------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE-AKEFMRSM-PF----EPDASVLGALLGACKIHG 249 (311)
Q Consensus 182 ~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g 249 (311)
. ++++++.+++++.. .+-|...|+.+...+.+.|+... +.++.+++ .. ..+...+..+...+.+.|
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 6 89999999998864 24466788888888888887444 55677766 22 235577788888899999
Q ss_pred ChhHHHHHHHHHHh-cCCCchhHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLE-LQPKHCGRYVVLSNI 278 (311)
Q Consensus 250 ~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~ 278 (311)
+.++|.++++.+.+ .+|.....|...+..
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999999996 799988777766543
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=3.1e-09 Score=84.62 Aligned_cols=163 Identities=7% Similarity=-0.087 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CCc--
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKGL---RAN-- 166 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 166 (311)
...+...+..+...|++++|.+.+.+.... ....+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445566788899999999999999876321 123345566778889999999999999875321 222
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhcc---CCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGK---FEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD------ 234 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------ 234 (311)
..+++.+...|...|++++|...++++++. .+..+ ...++..+...|...|++++|.+.+++. .+.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999998732 11122 2257888999999999999999999887 11111
Q ss_pred -cchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 040965 235 -ASVLGALLGACKIHGAVDLC-HEVGRRLLE 263 (311)
Q Consensus 235 -~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 263 (311)
..+|..+...|...|++++| ...++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45677788889999999999 888998875
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=1e-09 Score=75.62 Aligned_cols=109 Identities=6% Similarity=-0.113 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+......+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555666677777777777777776643 1224556666677777777777777777666 3333 345666666777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...|++++|...|+++++++|++..++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777666655543
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=2.4e-09 Score=77.24 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|+++.|...|++..+. .+.+..++..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666677777777777777777653 2234566777777788888888888888776 3334 456677777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHH--HHHHhccchhHHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVL--SNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...|++++|...++++.+..|.+...+..+ +..+.+.|++++|...+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999999887777444 4447788999999999887654
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.12 E-value=3.9e-10 Score=80.16 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345555666666666666666666666 3334 34555566666666677777777777777777766666667777777
Q ss_pred ccchhHHHHHHHHHHHHcc
Q 040965 281 GLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~ 299 (311)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777776666543
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=1.8e-08 Score=80.23 Aligned_cols=160 Identities=7% Similarity=-0.068 Sum_probs=122.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc-----h----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc----HHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK-----D----VCTWNAMISSLASNSREKEALVMFDEMKEKGLR-AN----EIT 169 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~ 169 (311)
+...+..+...|++++|...+++.... + ...+..+...+...|++++|+..+++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577889999999999999987432 2 123445777788889999999999999874222 22 346
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccC----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-cc
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKF----EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-------PFEPD-AS 236 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 236 (311)
++.+...|...|++++|..+|+++++.. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999999988421 1222 2347888999999999999999998877 21222 46
Q ss_pred hHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 040965 237 VLGALLGACKIHGA-VDLCHEVGRRLLE 263 (311)
Q Consensus 237 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 263 (311)
+|..+...+...|+ +++|...++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67788888999995 6999999999886
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.09 E-value=1.7e-09 Score=87.87 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----------------hhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----------------MEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
..+..+...+.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|.+.+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 222 357888888899999999999998887 3
Q ss_pred CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH-HHHHHHHH
Q 040965 231 FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA-TDLRKAMV 296 (311)
Q Consensus 231 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 296 (311)
..| +...+..+..+|...|++++|...|+++++..|++..++..+..++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5677888888999999999999999999999999988999999999999999988 44666664
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=1.6e-09 Score=74.55 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=91.3
Q ss_pred Cccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 199 VVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 199 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|++..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 366788899999999999999999998 4445 567888888999999999999999999999999999999999
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.+|...|++++|.+.|++..+..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999886543
No 125
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1.4e-08 Score=89.42 Aligned_cols=216 Identities=8% Similarity=-0.064 Sum_probs=162.8
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHH-HHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI-RVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+..+|++.+..- +-+..+|...+..+...|+.++|. ++|++... .+...|...+...-+.|++++|.++|+++.+
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777653 446777888888888899999997 99988843 3555677788888899999999999999876
Q ss_pred cC---------CCC------------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CC
Q 040965 161 KG---------LRA------------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-GL 218 (311)
Q Consensus 161 ~~---------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 218 (311)
.. ..| ....|...+....+.|..+.|..+|.++++.. ..+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCC
Confidence 41 013 23467888888888999999999999998641 112233444333333344 45
Q ss_pred HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---chhHHHHHHHHHhccchhHHHHHHHH
Q 040965 219 LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK---HCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 219 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.+.|..+|+.. ...| +...+...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 3234 4455567777778899999999999999997773 45688888999999999999999999
Q ss_pred HHHHccCCC
Q 040965 294 AMVEAGIRK 302 (311)
Q Consensus 294 ~m~~~~~~~ 302 (311)
++.+..+..
T Consensus 566 R~~~~~P~~ 574 (679)
T 4e6h_A 566 RFFEKFPEV 574 (679)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhCCCC
Confidence 999876653
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=6.1e-10 Score=79.13 Aligned_cols=101 Identities=7% Similarity=-0.170 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...|++++.. .+.+...|..+..+|...|++++|.+.|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344555555666666666666666666542 1224445566666666666666666666665 2233 33455555566
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCch
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+...|++++|...|+++++..|+++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 6666666666666666666666554
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.05 E-value=5.5e-09 Score=81.28 Aligned_cols=138 Identities=9% Similarity=-0.053 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc--hhhHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDL 212 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 212 (311)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566677778888888888776654 344335555555777888888888888755432 1 221 2356667778
Q ss_pred HHhcCCHHHHHHHHHhC--CCC-CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSM--PFE-PD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
+...|++++|++.|++. +.. |. .........++.+.|+.++|...|+++...+|. ...+..|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888877 211 43 123444555677888888888888888888887 656555543
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=4.6e-09 Score=71.63 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|..+++++ ... .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666666677777777777777776643 1224456666777777777777777777766 222 345566677777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+...|++++|...++++.+..|.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 88888888888888888888888777777776666543
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.04 E-value=4.1e-09 Score=72.93 Aligned_cols=116 Identities=8% Similarity=-0.061 Sum_probs=85.3
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4566777777777888888888888877753 1224566777777777888888888887776 3333 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+...|++++|...++++.+..|.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888888888887777777777776554
No 130
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.04 E-value=5.7e-08 Score=85.61 Aligned_cols=242 Identities=10% Similarity=-0.007 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcC-------CHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH-HHHHHHhhccCC
Q 040965 27 VSWTSIINGFVRNG-------CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK-QVHGYILRNEIV 98 (311)
Q Consensus 27 ~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 98 (311)
..|...+..--..+ ..+.+..+|++++..- +-+...|......+ ...|+.++|. +++++..... +
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~---p~~~~lW~~ya~~~---~~~~~~~~a~r~il~rAi~~~-P 375 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV---CFAPEIWFNMANYQ---GEKNTDSTVITKYLKLGQQCI-P 375 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHH---HHHSCCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc---CCCHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHhC-C
Confidence 45666665443332 1345667888887632 22344444444322 2356688896 9999998753 4
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc-------------c------------hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI-------------K------------DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
.+...|..++....+.|++++|.++|+++.. | ....|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677778888889999999999999998853 2 12357777888888899999999
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 154 MFDEMKEK-GLRANEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 154 ~~~~m~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
+|.+..+. + .+....|...+..-.+. ++.+.|..+|+..++.+ +.+...+...++.....|+.+.|..+|++. .
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999876 2 12233444333333343 55999999999999863 334456677888888899999999999998 3
Q ss_pred CCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 231 FEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 231 ~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
..| ....|...+..-...|+.+.+..+.+++.+..|++. ....++.-|
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 334 235677777777889999999999999999999875 333444433
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=4.6e-09 Score=72.31 Aligned_cols=117 Identities=10% Similarity=-0.015 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|+++.|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445566666677777777777777776643 1224556666777777777777777777776 2233 34566777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
+...|++++|...++++.+..|.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888877888888887777654
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=1.3e-09 Score=79.88 Aligned_cols=126 Identities=10% Similarity=0.112 Sum_probs=90.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCH-
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGLL- 219 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 219 (311)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888877763 346678888888888888888888888888754 12245567777777 6778887
Q ss_pred -HHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 220 -SEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 220 -~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
++|.+.++++ ...|+ ...+..+...+...|++++|...++++.+..|++..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888887 33443 466677777788888888888888888888887653
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=3e-09 Score=82.78 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACAR 179 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~ 179 (311)
...+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3345555666666666666666663 2222244445556666666666666665433221 111 2345555666666
Q ss_pred cccHHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 040965 180 AQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD 234 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 234 (311)
.|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+
T Consensus 184 LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666666532 22132 234445555666666666666666666 33455
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=1.6e-08 Score=75.55 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=32.5
Q ss_pred hhcCChHHHHH---HHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 6 VKNGDMDSAIL---LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 6 ~~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
...|++++|.+ ++..-+.....++..+...+...|++++|...+++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45788888888 44332223556778888888888888888888887765
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=5.7e-10 Score=83.47 Aligned_cols=171 Identities=9% Similarity=-0.035 Sum_probs=97.6
Q ss_pred HHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
+......|+++++.+.++.-... ....+..+...+...|++++|...|++..+.. |+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444455555555555433211 34455556666666677777777666665531 110000000 000
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
.-. . ......+..+..+|...|++++|.+.+++. ...| +...+..+..++...|++++|...|++++
T Consensus 81 ~~~---~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 0 001246777888888888999988888887 3344 55677788888999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhccchhHHHH-HHHHHHHHcc
Q 040965 263 ELQPKHCGRYVVLSNIHAGLERWNRAT-DLRKAMVEAG 299 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 299 (311)
+..|.+..++..+..++...++.+++. ..+..|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999889999999999999888887 6666665544
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=1.9e-08 Score=71.36 Aligned_cols=104 Identities=6% Similarity=-0.149 Sum_probs=84.6
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHH
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGA 240 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 240 (311)
.| +...+..+...+.+.|++++|...|++++.. .+.+...|..+..+|...|++++|.+.|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44 3456777788889999999999999998854 2335677888899999999999999999888 4445 4577788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+..+|...|++++|...|+++++..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88889999999999999999999888764
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.97 E-value=5.6e-09 Score=69.77 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--chhHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSN 277 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (311)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456777788888888999998888887 3333 4566777888888999999999999999999888 8888999999
Q ss_pred HHhcc-chhHHHHHHHHHHHHccCCC
Q 040965 278 IHAGL-ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 278 ~~~~~-g~~~~A~~~~~~m~~~~~~~ 302 (311)
++... |++++|.+.+++..+....+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999988766543
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=2.7e-08 Score=74.24 Aligned_cols=149 Identities=13% Similarity=-0.009 Sum_probs=72.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc------c---hHhhHHHHHHHHHcCCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI------K---DVCTWNAMISSLASNSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~~ 149 (311)
.|++++|.+.++.+.. .......++..+...+...|++++|...+++... . ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666664333322 1123445566666666666666666666665532 1 2344555566666666666
Q ss_pred HHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCCH
Q 040965 150 EALVMFDEMKEK----GLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 150 ~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 219 (311)
+|.+.+++..+. +..| ....+..+...+...|++++|...+++..+...... ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666654432 1011 123445555556666666666666655542200000 112234444445555555
Q ss_pred HHHHHHHHh
Q 040965 220 SEAKEFMRS 228 (311)
Q Consensus 220 ~~A~~~~~~ 228 (311)
++|.+.+++
T Consensus 164 ~~A~~~~~~ 172 (203)
T 3gw4_A 164 LEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=3.5e-09 Score=74.59 Aligned_cols=100 Identities=9% Similarity=-0.132 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|++++|...|++++.. .+.+...|..+..+|...|++++|...|++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44455555666667777777777666643 1224455666666666667777776666665 2233 334455555666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCch
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
...|++++|...|+++++..|+++
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 666777777777766666666554
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=3.4e-08 Score=71.09 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+..+...+...|++++|...|++... .+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33444444455555555555544421 133444444444444555555555554444432 12334444444444444
Q ss_pred ccHHHHHHHHHHhh
Q 040965 181 QLVELGLELFHSML 194 (311)
Q Consensus 181 ~~~~~a~~~~~~~~ 194 (311)
|++++|...++++.
T Consensus 95 ~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 95 GKFRAALRDYETVV 108 (166)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 45555554444444
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-08 Score=70.48 Aligned_cols=96 Identities=8% Similarity=-0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+......+.+.|++++|...|++.++. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555566666666666666665542 1223445555555666666666666665555 2233 234455555555
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 040965 246 KIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~ 265 (311)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 56666666666666666555
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.93 E-value=9.2e-09 Score=70.22 Aligned_cols=97 Identities=16% Similarity=-0.028 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|...|++. ...| +...+..+..++...|++++|...++++++.+|++..++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666778889999999999999998 4455 567777888889999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHccC
Q 040965 282 LERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~ 300 (311)
.|++++|...+++..+.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887543
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=3.9e-09 Score=74.89 Aligned_cols=96 Identities=10% Similarity=-0.054 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+...|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++.++..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445555555666666666666555 2223 334445555555566666666666666666666655556666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+..
T Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 666666666666555543
No 144
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.92 E-value=1.9e-06 Score=73.58 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCC-HhHHHHHHHHhhcCCCCCC-CchHHHHHHHHHhhhh-hhcCcch
Q 040965 9 GDMDSAILLFENMLK--RDVVSWTSIINGFVRNGC-FGEAICVFKNMMGNVNLVR-PNEATYVSVLSSCAGL-VNEGGLY 83 (311)
Q Consensus 9 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~-~~~~~~~ 83 (311)
|+++.+..+|++... |+...|...+....+.++ .+....+|+.+...-+ .. ++...|...+..+... ...++.+
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 788999999998843 688899888888777763 4567778888775411 22 3456666555433211 1234578
Q ss_pred hHHHHHHHHhhc
Q 040965 84 LGKQVHGYILRN 95 (311)
Q Consensus 84 ~a~~~~~~~~~~ 95 (311)
.+..+|++.+..
T Consensus 107 ~vR~iy~rAL~~ 118 (493)
T 2uy1_A 107 KIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhC
Confidence 888888888774
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.89 E-value=1.6e-08 Score=73.07 Aligned_cols=108 Identities=10% Similarity=-0.060 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|+..|++.++. .+.+...|..+..+|...|++++|.+.|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667888888999999999999999999864 2335678889999999999999999999988 4445 4577888888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.+...|++++|...|+++++..|++...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999987655433
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.89 E-value=5e-08 Score=65.66 Aligned_cols=109 Identities=9% Similarity=-0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555556666666666555532 1223445555555566666666666666555 2223 344555556666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...|++++|...++++.+..|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666777777777777666666665555444433
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1e-08 Score=74.98 Aligned_cols=122 Identities=8% Similarity=0.056 Sum_probs=72.1
Q ss_pred HhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccccH--H
Q 040965 111 YGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA-CARAQLV--E 184 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 184 (311)
+...|++++|+..+++... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666677666666522 245666667777777777777777777766542 2245556666666 5566776 7
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+|...++++++. .+.+...+..+...|...|++++|.+.++++ ...|+.
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777777776643 1223455666666777777777777777665 334443
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=2.5e-06 Score=68.60 Aligned_cols=240 Identities=13% Similarity=0.027 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
.++.+-....+.+..++|++++++++. +.|+..| |+.--.+...++. .+++++..++.++... +.+..+|+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~----~nP~~ytaWn~R~~iL~~l~~--~l~eEL~~~~~~L~~n-PKny~aW~h 128 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVR----MNPAHYTVWQYRFSLLTSLNK--SLEDELRLMNEFAVQN-LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 344444444455566789999999988 5666544 3333222222221 4888999998888876 346677777
Q ss_pred HHHHHhhc-C-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCcHHHHHHH
Q 040965 107 LIDLYGKV-G-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK--------EALVMFDEMKEKGLRANEITFVAV 173 (311)
Q Consensus 107 l~~~~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l 173 (311)
-..++.+. + ++++++++++++... +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 66666666 6 788888988888655 4445554444444444444 8888888888874 3377778777
Q ss_pred HHHHHcccc-------HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHH
Q 040965 174 LTACARAQL-------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL--------------------SEAKEFM 226 (311)
Q Consensus 174 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~ 226 (311)
...+.+.++ ++++++.+++++.. .+-|...|+-+-..+.+.|+. ....+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 777777665 67888888887753 233556676666666655543 3334444
Q ss_pred HhC-CC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCchhHHHHHHH
Q 040965 227 RSM-PF-------EPDASVLGALLGACKIHGAVDLCHEVGRRLL-ELQPKHCGRYVVLSN 277 (311)
Q Consensus 227 ~~~-~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 277 (311)
.++ +. .++......|+..|...|+.++|.++++.+. +.+|.....|...+.
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 444 11 1344555666677777777777777777776 466766555554443
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.88 E-value=2.1e-08 Score=69.86 Aligned_cols=100 Identities=7% Similarity=-0.138 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|...|++.+.. .+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666667777777666666643 1223455666666666666666666666665 2233 3345555556
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
.+...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666665555
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-08 Score=70.40 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=89.9
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+..++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999998 5555 56778888888999999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHHHccC
Q 040965 278 IHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++.+.|++++|...+++..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999987654
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.87 E-value=3e-08 Score=67.48 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999998 3334 56778888889999999999999999999999999889999999999
Q ss_pred ccchhHHHHHHHHHHHHccC
Q 040965 281 GLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~ 300 (311)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=4e-06 Score=67.12 Aligned_cols=247 Identities=13% Similarity=0.037 Sum_probs=160.1
Q ss_pred cHHHHHHHHHH---HHhcCCHh-HHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhc-------CcchhHHHHHHHH
Q 040965 25 DVVSWTSIING---FVRNGCFG-EAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNE-------GGLYLGKQVHGYI 92 (311)
Q Consensus 25 ~~~~~~~l~~~---~~~~g~~~-~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~-------~~~~~a~~~~~~~ 92 (311)
....|..+... ..+.|.++ +|+++++.++. ..|+..| |+.--.....++.. ..+++++.+++.+
T Consensus 25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 34445444433 34567665 79999999998 6677655 33322222222211 1157888888888
Q ss_pred hhccCCchHHHHHHHHHHHhhcC--CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCc
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVG--CLERAIRVFKSMVIK---DVCTWNAMISSLASNSR-EKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~ 166 (311)
+... +.+..+|+.-..++.+.| ++++++++++++... |..+|+.-...+...|. ++++++.++++.+.. +-|
T Consensus 101 L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N 178 (331)
T 3dss_A 101 LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 178 (331)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCC
T ss_pred HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCC
Confidence 8875 446778877777777777 488999999988544 55666666666677777 689999999998875 336
Q ss_pred HHHHHHHHHHHHcc--------------ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-----------CCHHH
Q 040965 167 EITFVAVLTACARA--------------QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-----------GLLSE 221 (311)
Q Consensus 167 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~ 221 (311)
...|+.....+... +.++++++.++..+.. .+-|...|+-+-..+.+. +.+++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 77777666655544 5678888888888854 233455665444444444 34677
Q ss_pred HHHHHHhC-CCCCCcchHHHHHHH-----HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 222 AKEFMRSM-PFEPDASVLGALLGA-----CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 222 A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+++.++++ ...||. .|..+..+ ....|..+++...+.++.+++|...+-|..+...+.
T Consensus 257 el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 257 ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 77777777 555655 23222111 123566677888888888888887777776655543
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=2.2e-06 Score=68.61 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=160.9
Q ss_pred hHHHHHHHHHhhhhhhcCcch-hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC----------HHHHHHHHHHcccc-
Q 040965 63 EATYVSVLSSCAGLVNEGGLY-LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC----------LERAIRVFKSMVIK- 130 (311)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~- 130 (311)
...|..+...+....+.|.++ +|+++.+.++...+ -+..+|+.--.++...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344555555443333355554 78999999998763 345566655444444433 67888888887443
Q ss_pred --hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc-HHHHHHHHHHhhccCCCccchhh
Q 040965 131 --DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEITFVAVLTACARAQL-VELGLELFHSMLGKFEVVPIMEH 205 (311)
Q Consensus 131 --~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 205 (311)
+..+|+.-...+...+ +++++++.++++.+.. +-|...|+.-...+...|. .+++++.++++++. .+-|...
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SA 181 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSS 181 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHH
Confidence 5667777667777777 4899999999999874 3377888877777778888 58999999999975 2345566
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc-----------CChhHHHHHH
Q 040965 206 YGCVVDLLGRA--------------GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH-----------GAVDLCHEVG 258 (311)
Q Consensus 206 ~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~ 258 (311)
|+.....+... +.++++++.+.+. ...| |...|+.+-..+... +.++++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 76666555554 4578889988887 4455 445555444444433 3578999999
Q ss_pred HHHHhcCCCchhHHHHHHHH---HhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLELQPKHCGRYVVLSNI---HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++.+..|++..++..++.. ....|..+++...+.++.+.++
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 99999999986665544432 2346778889999999887543
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=8.3e-08 Score=67.57 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLG 239 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 239 (311)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4556666666677777777777777777643 343 456666677777777777777777766 3334 445666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+...+...|++++|...++++.+..|++...+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6667777788888888888888888887766665555544
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=9.9e-09 Score=83.36 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=73.3
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-h---------------HhhHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-D---------------VCTWNAMISSLA 143 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~ 143 (311)
+++|...++...+.. +.+...+..+...|.+.|++++|+..|++... | + ..+|..+..+|.
T Consensus 129 ~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 129 FEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443322 12345666667777777777777777766622 2 1 245555555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++++. .+.+...+..+..++...|++++|
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555542 224455555555555555666665555555532 111234455555555555555555
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=3.9e-08 Score=69.10 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444555556666666666666655 2233 334455555556666666666666666666666665566666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666655543
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.3e-08 Score=67.28 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.+|++..+|..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666665 2233 345555555666666666666666666666666666666666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 666666666666665543
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.3e-08 Score=68.59 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=89.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|...++++.+..|++...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5567888889999999999999999998 66777 577788888899999999999999999999999988999999
Q ss_pred HHHhccchhHHHHHHHHHHHHccCC
Q 040965 277 NIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.++...|++++|...|++..+....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999886543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=3.8e-08 Score=66.27 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=87.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++...+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999998 3344 5677788888899999999999999999999999998999999999
Q ss_pred hccchhHHHHHHHHHHHHccC
Q 040965 280 AGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...|++++|...+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887654
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.82 E-value=4.4e-08 Score=67.39 Aligned_cols=101 Identities=13% Similarity=-0.029 Sum_probs=64.5
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHH
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGAC 245 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 245 (311)
.+...+...|++++|...|+.+.+.....+ ....+..+..++...|++++|.+.|++. ...|+ ...+..+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345566777777888777777765311111 0135666677777777777777777776 33343 34455566667
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
...|++++|...|+++.+..|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 777777777777777777777765433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=2e-08 Score=69.19 Aligned_cols=92 Identities=7% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch-------hHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC-------GRYVVLS 276 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~ 276 (311)
+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444444455555555544444 2223 223344444445555555555555555554443321 1344444
Q ss_pred HHHhccchhHHHHHHHHHHHH
Q 040965 277 NIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.++...|++++|.+.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555554443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=6.9e-08 Score=69.63 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=80.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..|++.++. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56678888888889999999999999888763 336778888888889999999999999988864 123466788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
.+|...|++++|.+.|++. ...|+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8899999999999988887 334443
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=5.9e-08 Score=66.60 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=88.5
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++...+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888889999999999999999988 3344 567788888889999999999999999999999998899999999
Q ss_pred HhccchhHHHHHHHHHHHHccC
Q 040965 279 HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...|++++|...+++..+.+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999988754
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=5e-08 Score=77.10 Aligned_cols=188 Identities=10% Similarity=-0.041 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+-.++. +.|++++|...+++.++.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYL---KMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 456778888899999999999999999987 45643 44444443332 3667999999999988875 345778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccchHh---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVC---TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+..+..+|...|++++|+..|++....++. .+...+....+ ..++.. +........+.+......+. .+ ..
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~ 148 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLT-RL-IA 148 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HH
Confidence 888899999999999999999887443221 11112222111 111111 12222333333444333332 22 36
Q ss_pred ccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhc-CCHHHHHHHHHhC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRA-GLLSEAKEFMRSM 229 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~ 229 (311)
|+.++|.+.++...+ ..|+. .....+...+.+. +.+++|.++|+++
T Consensus 149 ~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 149 AERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999988888874 34443 3334444444454 6788899999776
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=4.5e-08 Score=82.95 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=85.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-------------chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVP-------------IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
.+..+...+.+.|+++.|...|+++++.....+ ....|..+..+|.+.|++++|++.+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444444555555555555555555543200000 1356777888888888888888888887 3334
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHH-HHHHHH
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD-LRKAMV 296 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 296 (311)
+...|..+..+|...|++++|...|++++++.|++..++..+..++.+.++++++.+ .++.|.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777788888889999999999999998888888888888888888888887764 444443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.6e-07 Score=77.62 Aligned_cols=189 Identities=12% Similarity=-0.033 Sum_probs=95.1
Q ss_pred hhhhcCcchhHHHHHHHHhhccCCch----------------HHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----h--
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIVLS----------------VFMGTALIDLYGKVGCLERAIRVFKSMVIK-----D-- 131 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-- 131 (311)
.+.+.|++++|.+.+..+++.....+ ...+..++..|...|++++|.+.+..+.+. +
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 33446777777777777776532211 122455666666667776666666655221 1
Q ss_pred --HhhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCcc
Q 040965 132 --VCTWNAMISSLASNSREKEALVMFDEMKE----KGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKF---EVVP 201 (311)
Q Consensus 132 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 201 (311)
..+.+.+...+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.... +..+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 11223333344445666666666665442 122222 3455555666666666666666665544321 1111
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 202 -IMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDA-----SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 202 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...++..++..|...|++++|..++++. ...++. ..+..+...+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1234555556666666666666665544 001111 2233333344455566666665555554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=8.4e-08 Score=66.71 Aligned_cols=96 Identities=14% Similarity=-0.008 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|++..++..++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 444555555555566666666555554 2223 23444555555555666666666666666555555555555666666
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..|++++|...|++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 666666666655555543
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.1e-06 Score=73.69 Aligned_cols=194 Identities=7% Similarity=-0.042 Sum_probs=137.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch---------------HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNE---------------ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE 96 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---------------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 96 (311)
-...+.+.|++++|++.|..+.+..+ ...+. ..+..+...|. +.|++++|.+.+..+.+.-
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~---~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDS-SQSSAAAGASVDDKRRNEQETSILELGQLYV---TMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCC-CSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc-ccchhHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
Confidence 35668899999999999999998652 11111 12444544443 4777999999999887642
Q ss_pred CC-ch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-
Q 040965 97 IV-LS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK- 161 (311)
Q Consensus 97 ~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 161 (311)
.. ++ ..+.+.+...+...|++++|..++.+.... -..++..+...|...|++++|..+++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 11 11 234445556666779999999999877321 2457788999999999999999999987653
Q ss_pred ---CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC---Cccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 162 ---GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFE---VVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 162 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+-.+ ...++..++..|...|++++|..++++...... .++. ...+..+...+...|++++|...|.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1122 245788888999999999999999998764311 1111 245566677778899999999988776
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=1.1e-07 Score=65.36 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444443331 1123334444444444444444444444433
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.71 E-value=1.8e-07 Score=79.34 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHccccHHHHHHHHHHhhccC----C-Ccc-chhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-chHH
Q 040965 176 ACARAQLVELGLELFHSMLGKF----E-VVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SVLG 239 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 239 (311)
.+...|++++|+.++++.++.. | -.| ...+++.|...|...|++++|..++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998876431 1 123 3467899999999999999999998876 223433 6688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----cCCCchh---HHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLE-----LQPKHCG---RYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|...|...|++++|+.+++++++ .+|+++. ....+..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999985 6777654 45577888889999999999999998754
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.70 E-value=2.4e-08 Score=81.13 Aligned_cols=152 Identities=11% Similarity=-0.025 Sum_probs=81.1
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
....+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 3456777788888889999999999887765 444331 233444444432221 12677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH-HhccchhHH
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGLERWNR 287 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 287 (311)
.+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++|...|+++++..|++..++..+..+ ....+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999998888887 3344 557778888888889999999999999988888887777777766 334566777
Q ss_pred HHHHHHHHHHccCCC
Q 040965 288 ATDLRKAMVEAGIRK 302 (311)
Q Consensus 288 A~~~~~~m~~~~~~~ 302 (311)
+...|++|.......
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888888887655443
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.70 E-value=8.8e-08 Score=67.56 Aligned_cols=62 Identities=18% Similarity=0.050 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCchhHH----HHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLEL-------QPKHCGRY----VVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.|..+..++.+.|++++|+..++++++. +|++..+| ...+.++...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666677777777777777777777 88777777 77888888888888888888777654
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=7.8e-08 Score=66.00 Aligned_cols=42 Identities=2% Similarity=-0.186 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
..+..+...+...|++++|...++++.+..|+ +.....+..+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 121 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 34445555566666666666666666666553 3344444333
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=3.7e-06 Score=67.62 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=154.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcC-C-CHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASN-S-REKEAL 152 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 152 (311)
.+..++|++++++++... +-+..+|+.-..++...| .+++++.+++.+... +..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 334578999999999886 336677887777777888 599999999998544 556676666666554 6 889999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHH--------HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC------
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVE--------LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL------ 218 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 218 (311)
++++++.+.. +-+...|+.-.-.+.+.|..+ ++++.++++++. .+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999998764 337778877666666667766 899999999875 23466778877777777776
Q ss_pred -HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC------CCch
Q 040965 219 -LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV--------------------DLCHEVGRRLLELQ------PKHC 269 (311)
Q Consensus 219 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~~ 269 (311)
++++++.++++ ...| |...|+.+-..+.+.|+. .....+..++.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888887 4455 456666666556665553 23333333333322 4566
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 270 GRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+...|++.|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6888999999999999999999999864
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=6.5e-08 Score=69.08 Aligned_cols=130 Identities=12% Similarity=-0.010 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----cc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPD----AS 236 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 236 (311)
++..+...+...|++++|...+++.++...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555556666666655555432100011 134555666666666766666666654 10111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQP------KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+..+...+...|++++|...++++.+..+ ....++..++..+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455566667778888888888887775321 12346777888888888999998888887654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=5.4e-08 Score=82.84 Aligned_cols=116 Identities=9% Similarity=-0.033 Sum_probs=75.7
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 253 (311)
.+.+.|++++|...+++.++. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666777666666643 1223556666677777777777777777666 3344 34566667777778888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHH--HhccchhHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNI--HAGLERWNRATDLRK 293 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 293 (311)
|...++++.+..|++..++..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888777677766666 777788888888776
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.69 E-value=7.1e-08 Score=66.23 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------hhHHH
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-------CGRYV 273 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 273 (311)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888877 3233 55667778888889999999999999999877665 67889
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.++.++...|++++|...|++..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988653
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.67 E-value=3e-07 Score=75.59 Aligned_cols=90 Identities=8% Similarity=-0.035 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++|...|+++++..|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999998 5566 4577888888999999999999999999999999988999999999
Q ss_pred hccchhHHHHHH
Q 040965 280 AGLERWNRATDL 291 (311)
Q Consensus 280 ~~~g~~~~A~~~ 291 (311)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.67 E-value=2.7e-07 Score=63.34 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHHHHHHhc
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDAS----VLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVLSNIHAG 281 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 281 (311)
...+...|++++|.+.|+++ ...|+.. .+..+...+...|++++|...++++.+..|++ +.++..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444444444444444444 1122221 33334444444444444444444444444444 3344444444444
Q ss_pred cchhHHHHHHHHHHHH
Q 040965 282 LERWNRATDLRKAMVE 297 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~ 297 (311)
.|++++|...|+++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=4.7e-08 Score=72.93 Aligned_cols=97 Identities=8% Similarity=-0.076 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-----------------ASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|...++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666666777777777776665 22222 2567778888999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|++..++..++.+|...|++++|...|++..+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999987654
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=1.6e-07 Score=62.45 Aligned_cols=94 Identities=13% Similarity=-0.075 Sum_probs=41.4
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHh
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKI 247 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~ 247 (311)
.+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...|+ ...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 3333444444444444444444332 1112333444444444444444444444444 22222 3344444444555
Q ss_pred c-CChhHHHHHHHHHHhcCCC
Q 040965 248 H-GAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 248 ~-g~~~~a~~~~~~~~~~~~~ 267 (311)
. |++++|.+.++++....|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCC
T ss_pred HhCCHHHHHHHHHHHhhcccC
Confidence 5 5555555555555554444
No 182
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=7.7e-06 Score=69.82 Aligned_cols=263 Identities=10% Similarity=-0.034 Sum_probs=157.3
Q ss_pred hcC-ChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 7 KNG-DMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 7 ~~g-~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
+.| +++.|..+|++... |. |+++.+..+|++... ..|+...|...+.-....+. ..+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~----~~ps~~LW~~Y~~f~~~~~~--~~~ 65 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLK----KSYNLDLWMLYIEYVRKVSQ--KKF 65 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHC------
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCc--hHH
Confidence 456 37788888887743 22 889999999999988 45788888888775544331 246
Q ss_pred hHHHHHHHHhhc-cC-CchHHHHHHHHHHHh----hcCCHHHHHHHHHHccc-c--h-Hh--------------------
Q 040965 84 LGKQVHGYILRN-EI-VLSVFMGTALIDLYG----KVGCLERAIRVFKSMVI-K--D-VC-------------------- 133 (311)
Q Consensus 84 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~--~-~~-------------------- 133 (311)
....+|+..+.. |. +.+..+|...+..+. ..|+++.+..+|++++. | + ..
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 677888877764 43 336678888777654 34678888888888733 1 0 00
Q ss_pred ----------------------------hHHHHHHHHHcC--CC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 134 ----------------------------TWNAMISSLASN--SR-----EKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 134 ----------------------------~~~~l~~~~~~~--~~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.|...+..-... |- .+.+..+|+++... .+.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 111111111111 00 23456677777665 2345677777777788
Q ss_pred ccccHHHHHHHHHHhhccCCCccchh-hH----------------------------------------HHHHHHHHhcC
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIME-HY----------------------------------------GCVVDLLGRAG 217 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~----------------------------------------~~l~~~~~~~g 217 (311)
+.|+.+.|..++++.+.. |... .+ ...+....+.+
T Consensus 225 ~~~~~~~ar~i~erAi~~----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 889999999999998864 3221 11 11122222355
Q ss_pred CHHHHHHHHHhCCCCCC--cchHHHHHHHH-HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 218 LLSEAKEFMRSMPFEPD--ASVLGALLGAC-KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+.+.|..+|++.. .|. ...|......- ...++.+.|..+|+.+.+..|+++..+...++...+.|+.+.|..+|++
T Consensus 301 ~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 301 GLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp CHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777777762 232 12222212111 1233577788888877776676665666666666777777777777776
Q ss_pred H
Q 040965 295 M 295 (311)
Q Consensus 295 m 295 (311)
.
T Consensus 380 ~ 380 (493)
T 2uy1_A 380 L 380 (493)
T ss_dssp S
T ss_pred H
Confidence 5
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.63 E-value=1.2e-07 Score=68.10 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----------------CccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFE----------------VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
....+......+.+.|+++.|+..|.+.+.... .+.+...|..+..+|.+.|++++|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345677888889999999999999999875300 1112357788888899999999999998887
Q ss_pred -CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch-hHHHHHHHHHhcc
Q 040965 230 -PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC-GRYVVLSNIHAGL 282 (311)
Q Consensus 230 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 282 (311)
...| +...|..+..++...|++++|...|+++++++|++. .....+..+..+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4445 457788888889999999999999999999999887 3444444444333
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=2.6e-08 Score=67.43 Aligned_cols=92 Identities=9% Similarity=-0.015 Sum_probs=68.0
Q ss_pred ccccHHHHHHHHHHhhccCC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 179 RAQLVELGLELFHSMLGKFE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
..|++++|+..|++.++. + .+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 467888999999998864 2 1234567888888899999999999999887 4345 456677777888889999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 040965 255 HEVGRRLLELQPKHCGR 271 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (311)
...++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999888887643
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.62 E-value=3.3e-07 Score=65.83 Aligned_cols=104 Identities=15% Similarity=0.013 Sum_probs=80.0
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--------C---------CCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK--------G---------LRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
....+......+.+.|++++|+..|++.... . .+.+...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888889999999999999988764 0 0113467788888899999999999999998
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
++. .+.+...|..+..+|...|++++|.+.|++. ...|+..
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 864 2334677888889999999999999998887 5556544
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=1e-06 Score=62.71 Aligned_cols=127 Identities=9% Similarity=-0.047 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NE 167 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 167 (311)
.++..+...|...|++++|+..+++.... ...++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45566666677777777777777665322 1135556666666677777777776665432 1001 12
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccC---CCc-cchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKF---EVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS 228 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (311)
..+..+...+...|++++|...+++..+.. +.. ....++..+...+...|++++|.+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345555555666666666666666554320 000 0122334444444445555555444443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.59 E-value=8.1e-08 Score=64.97 Aligned_cols=83 Identities=8% Similarity=0.044 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 145 NSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
.|++++|+..|++..+.+. +.+...+..+..++...|++++|...|+++++. .+-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 3555555555555554321 112344555555555566666666666555543 111234455555555556666666
Q ss_pred HHHHHhC
Q 040965 223 KEFMRSM 229 (311)
Q Consensus 223 ~~~~~~~ 229 (311)
.+.+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555554
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.57 E-value=3.6e-07 Score=74.19 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
....+..+...+.+.|++++|+..|++....+.... .+...++.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345677888999999999999999998754322211 1234455555443331 1367778888899
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHH-HHhcCChhHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGA-CKIHGAVDLCHE 256 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~ 256 (311)
.|++++|+..++++++. .+.+...|..+..+|...|++++|.+.|++. .+.|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 2335678888889999999999999999988 556654 344444433 234567788888
Q ss_pred HHHHHHhcCCCch
Q 040965 257 VGRRLLELQPKHC 269 (311)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (311)
.|+++....|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999888877654
No 189
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=3.1e-07 Score=62.50 Aligned_cols=94 Identities=14% Similarity=-0.020 Sum_probs=44.5
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGA 250 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 250 (311)
+...+.+.|++++|...|+++++. .+.+...+..+..++...|++++|...|++. ...| +...+..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555532 1123344455555555555555555555554 2233 23344445555555555
Q ss_pred hhHHHHHHHHHHhcCCCc
Q 040965 251 VDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~ 268 (311)
+++|...++++++..|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 555555555555555543
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=1.7e-07 Score=79.86 Aligned_cols=121 Identities=9% Similarity=-0.048 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
.+..+...+.+.|++++|++.+++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455667778888888888887733 256777888888888888888888888887763 3356777778888888
Q ss_pred cccHHHHHHHHHHhhccCCCcc-chhhHHHHHHH--HHhcCCHHHHHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDL--LGRAGLLSEAKEFMR 227 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 227 (311)
.|++++|...|+++++. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888754 22 23345555544 777788888888877
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=4.4e-07 Score=76.87 Aligned_cols=137 Identities=13% Similarity=0.003 Sum_probs=78.4
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-h---------------HhhHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-D---------------VCTWNAMISSLA 143 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~ 143 (311)
+++|...++...+.. +.....+..+...|.+.|++++|+..|+++.. | + ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554443322 12345666677777777777777777777632 1 1 345556666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 222 (311)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++++. .| +...+..+..++.+.++.+++
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666542 224555666666666666666666666666532 23 234555555566666665555
Q ss_pred H
Q 040965 223 K 223 (311)
Q Consensus 223 ~ 223 (311)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=2.4e-07 Score=65.35 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=70.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccc-------------hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPI-------------MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF---- 231 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 231 (311)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344444555666666666666665532 222 226777777888888888888777766 44
Q ss_pred ---CCCc-chH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHH
Q 040965 232 ---EPDA-SVL----GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVV 274 (311)
Q Consensus 232 ---~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (311)
.|+. ..| .....++...|++++|+..|++++++.|.+...+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 6754 566 778888999999999999999999988887654443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=8e-08 Score=64.07 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc------hhHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH------CGRYV 273 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 273 (311)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456777777888888888888888877 3334 45667777778888889999999999988888887 66677
Q ss_pred HHHHHHhccchhHHHHHHHHH
Q 040965 274 VLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~ 294 (311)
.+..++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 777777777777776655543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.40 E-value=5.4e-06 Score=68.07 Aligned_cols=118 Identities=9% Similarity=-0.058 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHccc----------------c---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVI----------------K---DVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..+..+...+.+.|++++|+..|++... . +..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3456677778888888888888877654 1 23455555556666666666666666655542
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
+.+...+..+..+|...|++++|...|+++++. .| +...+..+..++...++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555666666666666666665532 22 3334444445555555554443
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=3.6e-05 Score=66.80 Aligned_cols=168 Identities=12% Similarity=-0.022 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC----------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc--
Q 040965 117 LERAIRVFKSMVIK---DVCTWNAMISSLASNSR----------EKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-- 181 (311)
Q Consensus 117 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-- 181 (311)
.++|++.++++..- +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34556666655332 23344444444444444 677777777776653 225566666666666667
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc----------
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG-LLSEAKEFMRSM-PFEP-DASVLGALLGACKIH---------- 248 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 248 (311)
++++++..++++++. .+-+..+|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 557777777777754 2234556666666666666 677777777776 4444 445555555554442
Q ss_pred ----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 249 ----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 249 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999988887554
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.36 E-value=5.3e-06 Score=70.44 Aligned_cols=119 Identities=10% Similarity=-0.076 Sum_probs=65.2
Q ss_pred hhcCcchhHHHHHHHHhhc-----c-CCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRN-----E-IVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAM 138 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 138 (311)
..+|++++|+.++++.++. | -.| ...+++.|...|...|++++|+.++++.... ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3466667776666665543 1 112 2456666666677777777766666655211 23456666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-----CC-CCc-HHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 139 ISSLASNSREKEALVMFDEMKEK-----GL-RAN-EITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
...|...|++++|+.++++..+. |. .|+ ..+...+..++...+.+++|..++.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665421 21 121 22334444555566666666666665543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.33 E-value=2.8e-06 Score=54.10 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+..++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888887776 3333 44566777778888888888888888888888888777877777765
Q ss_pred cc
Q 040965 281 GL 282 (311)
Q Consensus 281 ~~ 282 (311)
+.
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=3.6e-06 Score=54.97 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+..+...+...|++++|...|+++++.+|++..+|..++.+|...|++++|...+++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444445555555555555555555444445555555555555555555544443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.4e-06 Score=56.71 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=57.4
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-------hh
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-------ME 204 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 204 (311)
...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.++. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4456666677777777777777777766652 235566667777777777777777777777643 333 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+..+..++...|+++.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3444455555555555554444443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.24 E-value=6.9e-06 Score=55.01 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
+.|+..|++.++. .+.+...+..+...|...|++++|.+.|++. ...| +...+..+...+...|++++|...|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567778887753 2334567788888888899999999888887 3344 4567777778888889999999999988
Q ss_pred HhcCCC
Q 040965 262 LELQPK 267 (311)
Q Consensus 262 ~~~~~~ 267 (311)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887664
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=7.2e-05 Score=64.95 Aligned_cols=155 Identities=9% Similarity=-0.027 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc----------HHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL----------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
....++|++.++++...+ +-+...|+.--.++...|+ +++++..++.+++. .+-+..+|..-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344578899999999873 2256677776666777777 89999999999974 2345677887778888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc-------
Q 040965 215 RAG--LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL------- 282 (311)
Q Consensus 215 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 282 (311)
+.+ +++++.+.++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999999 3344 6677877777777888 899999999999999999999999888776653
Q ss_pred -------chhHHHHHHHHHHHHccCCC
Q 040965 283 -------ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 283 -------g~~~~A~~~~~~m~~~~~~~ 302 (311)
+.++++.+.+++....++..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 77899999999988766543
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=3e-06 Score=59.62 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc-----------hhHHHHHHHHHHHHccC
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE-----------RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 300 (311)
+++|+..|+++++++|+...+|..++.+|...| ++++|...|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 567777777777777777777777777777664 77777777777776544
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=4.9e-05 Score=52.78 Aligned_cols=108 Identities=5% Similarity=-0.144 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEALVMF 155 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~ 155 (311)
+.++|.+.|++..+.| .|+.. |...|...+.+++|++.|++..+. ++..+..+...|.. .+++++|.++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4677777777777666 22222 666666666777777777766433 56666667777766 67777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhcc
Q 040965 156 DEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGK 196 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 196 (311)
++..+.| +...+..|...|.. .++.++|..+|++..+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 7777664 44556666666666 67777777777777654
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.12 E-value=1.9e-05 Score=50.55 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 233 PDASVLGALLGACKIHGA---VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+|...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666777777654444 789999999999999999999999999999999999999999999887665
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=1.4e-05 Score=53.47 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+|++.|++..+.. +.+...+..+...+...|++++|...|++.++. .+.+...+..+..+|...|++++|.+.|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555442 224555666666666666666666666666543 1223445556666666666666666666554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=2.7e-05 Score=54.13 Aligned_cols=111 Identities=8% Similarity=-0.123 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 221 (311)
+++++|.++|++..+.| .|+.. +...|...+.+++|..+|++..+. + +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45666666666666665 22222 445555555666666666666543 2 33445555555555 556666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 265 (311)
|.++|++.-..-+...+..|...|.. .+++++|..+|+++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655112344445555555555 555666666666555543
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=1.2e-05 Score=56.52 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH----------HHHHHHHHhhccCCCccc-hhhHHHHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE----------LGLELFHSMLGKFEVVPI-MEHYGCVVDL 212 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 212 (311)
+.+.+++|.+.+++..+.. +.+...|..+..++...++++ +|+..|++.++ +.|+ ..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHH
Confidence 3455666666666666553 235566666666666665543 55555555553 2332 3345555555
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|...|.+ .|+.. ...|++++|...|+++++++|++. .|...+.. .++|.+++
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~ 141 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLH 141 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhcc
Confidence 5444432 22210 112689999999999999999986 45444433 35666666
Q ss_pred HHHHHccC
Q 040965 293 KAMVEAGI 300 (311)
Q Consensus 293 ~~m~~~~~ 300 (311)
-++...+.
T Consensus 142 ~~~~~~~~ 149 (158)
T 1zu2_A 142 AEAYKQGL 149 (158)
T ss_dssp HHHHHSSS
T ss_pred Cccccccc
Confidence 66665543
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.03 E-value=1.2e-05 Score=52.09 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPD-AS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
....+...|++++|.+.+++. ...|+ .. .+..+...+...|++++|...|+++++.+|++..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888887 33453 45 67777778888899999999999999888887766532 566
Q ss_pred HHHHHHHHHHHHc
Q 040965 286 NRATDLRKAMVEA 298 (311)
Q Consensus 286 ~~A~~~~~~m~~~ 298 (311)
.++...|++....
T Consensus 78 ~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 78 MDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHCCTTHH
T ss_pred HHHHHHHHHHhcc
Confidence 6677766655443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=3.3e-05 Score=48.89 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...+..+...+...|++++|...++++++..|.+..++..++.++.+.|++++|...+++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356677778899999999999999999999999998999999999999999999999999988654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.95 E-value=2.8e-05 Score=64.94 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHHhC--------C-CCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCch---hHHHHHH
Q 040965 215 RAGLLSEAKEFMRSM--------P-FEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHC---GRYVVLS 276 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~--------~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~ 276 (311)
..|++++|..++++. + ..|+. .+++.|...|...|++++|+.+++++++ .+|+++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888887665 1 22322 6678888999999999999999999885 455554 4688899
Q ss_pred HHHhccchhHHHHHHHHHHHH
Q 040965 277 NIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.94 E-value=2.4e-05 Score=65.36 Aligned_cols=92 Identities=8% Similarity=-0.114 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHHhhccC--CC---ccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-chHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKF--EV---VPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SVLGALL 242 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~--~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 242 (311)
..|++++|..++++.++.. -+ .|+ ..+++.|..+|...|++++|..++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999998876531 11 233 477899999999999999999998877 233443 6688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCchh
Q 040965 243 GACKIHGAVDLCHEVGRRLLE-----LQPKHCG 270 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 270 (311)
..|..+|++++|+.+++++++ .+|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999986 6788763
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=4.7e-05 Score=49.48 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
..+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444332 1123344444444444444444444444443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.89 E-value=9.7e-05 Score=61.75 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=73.9
Q ss_pred HHHHHccccHHHHHHHHHHhhccCC--C---cc-chhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-ch
Q 040965 174 LTACARAQLVELGLELFHSMLGKFE--V---VP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SV 237 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 237 (311)
+..+.+.|++++|+.++++.++... + .| ...+++.|+..|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678899999999998875421 1 12 3467888999999999999999998876 223333 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCchh
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHCG 270 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 270 (311)
++.|...|...|++++|+.+++++++ .+|+++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 77888889999999999999999885 6787763
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.82 E-value=8e-05 Score=62.26 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-----CCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCch---hH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-P-----FEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHC---GR 271 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~ 271 (311)
+..+.+.|++++|.+++++. . ..|+. .+++.+...|...|++++|+.+++++++ .+|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999998766 1 22332 5678888999999999999999999985 455554 46
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998764
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.79 E-value=0.0001 Score=47.54 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=55.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchh-HHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCG-RYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
....+...|++++|...++++++..|++.. .+..++.+|...|++++|...|++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455678999999999999999999999998 9999999999999999999999999987654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.68 E-value=0.006 Score=49.24 Aligned_cols=141 Identities=8% Similarity=-0.052 Sum_probs=88.4
Q ss_pred chHhhHHHHHHHHH--c---CCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHc---c-----ccHHHHHHHHHHhhc
Q 040965 130 KDVCTWNAMISSLA--S---NSREKEALVMFDEMKEKGLRAN-EITFVAVLTACAR---A-----QLVELGLELFHSMLG 195 (311)
Q Consensus 130 ~~~~~~~~l~~~~~--~---~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~---~-----~~~~~a~~~~~~~~~ 195 (311)
.+...|...+.+.. . ..+..+|..+|++..+. .|+ ...+..+.-++.. . .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36667777665533 2 23457888888888876 453 3444433333321 0 111111122222211
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
....+.+..+|..+...+...|++++|.+.++++ ...|+...|..+...+...|++++|.+.++++..++|..+ +|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 1123456677777777777789999999999888 4457766666667778889999999999999999988875 443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.0015 Score=52.70 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV 237 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 237 (311)
+..+|..+...+...|+++.|...+++++.. .|+...|..+...+.-.|++++|.+.|++. ...|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3444444444444445555555555555432 244444444444555555555555555444 33444433
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.39 E-value=0.022 Score=51.73 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
......|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3456678888888887665 3557888888888889999999988887642 2233444444666665555
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+-+..... | -++.-..+|.+.|++++|.+++.+++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 54444332 1 13334445556677777766665553
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.38 E-value=0.00074 Score=52.33 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHhcCCCc-hhHHHHHHHHHhcc-chhHHHHHHHHHHHHccCC
Q 040965 249 GAVDLCHEVGRRLLELQPKH-CGRYVVLSNIHAGL-ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 301 (311)
|+.++|.+.|+++++++|+. ..++...++.+++. |+.++|.+.+++.+.....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 55555555555555555542 44555555555542 5555555555555544443
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.30 E-value=0.0016 Score=42.51 Aligned_cols=71 Identities=21% Similarity=0.121 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-----P----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.+-.|...+...|+++.|...|+.. . -.+....+..|..++.+.|+++.|...++++.+..|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445566666666666666666554 0 012345677788888889999999999999988888886554433
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0011 Score=46.07 Aligned_cols=71 Identities=11% Similarity=-0.042 Sum_probs=38.4
Q ss_pred cchhhHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 201 PIMEHYGCVVDLLGRAG---LLSEAKEFMRSM-PFE-P--DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
++..+.-.+..++++.+ +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++.+++..|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444445555544 344555555554 111 3 12333444556677777777777777777777766533
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.22 E-value=0.0043 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555555544
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.11 E-value=0.029 Score=37.89 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=92.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+.-.|..++..++..+..... +..-||.++.-....-+-+-..++++.+-+.+++.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 345678888888888776542 445555565555555555666666666654433332 344444
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
....+-.++ .+...+..-+.....+|+-+.-.+++..+....+.++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 334445556677778888888888888876666666678888888888888888888888888887764
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0028 Score=44.10 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=63.8
Q ss_pred HHHHHHHhC--CCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 221 EAKEFMRSM--PFEPDASVLGALLGACKIHG---AVDLCHEVGRRLLELQ-P-KHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 221 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.+.+-|.+. .-.++..+.-.+..++++.+ +++++..++++..+.+ | ....++..|.-+|.+.|++++|.++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 344444443 22467777777888888888 7779999999999988 7 456788899999999999999999999
Q ss_pred HHHHccCC
Q 040965 294 AMVEAGIR 301 (311)
Q Consensus 294 ~m~~~~~~ 301 (311)
.+.+..+.
T Consensus 96 ~lL~ieP~ 103 (152)
T 1pc2_A 96 GLLQTEPQ 103 (152)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 99886543
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.04 E-value=0.14 Score=44.73 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEI----TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
.+.+.|...+....+... .+.. ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 477888888887765432 2222 2222232333444345566666665432 2232233344444456788888
Q ss_pred HHHHHHhCCCCC-Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 222 AKEFMRSMPFEP-DAS-VLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 222 A~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|.+.|+.|...+ +.. ..--+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 222 223344566778888888888888864
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.03 E-value=0.0044 Score=40.29 Aligned_cols=67 Identities=13% Similarity=-0.096 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLEL-------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+..+...+...|+++.|...++++.+. ++....++..|+.++.+.|++++|..++++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4455667888899999999999999999873 234567899999999999999999999999987544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.005 Score=39.12 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 202 IMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
++..+..+..++...++ .++|..++++. ...|+. .....+...+...|++++|...|+++.+.+|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445555554443332 45566665555 333432 33444444555666666666666666665555
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.046 Score=39.03 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777776666554 3455677777777777777777777665431 2223333444555555444
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+-+....+ | -++.-..++...|+++++.++|.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 43333322 1 24444455556677777777766665
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.66 E-value=0.075 Score=35.91 Aligned_cols=84 Identities=12% Similarity=-0.041 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+|++......+-.+.. +.......+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444444444443322 2334455566777778888888887775432 3667777777778888888888888888887
Q ss_pred hccCCCc
Q 040965 194 LGKFEVV 200 (311)
Q Consensus 194 ~~~~~~~ 200 (311)
.++ |++
T Consensus 152 C~k-G~k 157 (172)
T 1wy6_A 152 CKK-GEK 157 (172)
T ss_dssp HHT-TCH
T ss_pred HHh-hhH
Confidence 766 554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.1 Score=37.24 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=79.1
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... ... ..++. .. .|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~-L~~Ly--~~---tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDK-LSFLY--LV---TGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHH-HHHHH--HH---HTCHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHH-HHHHH--HH---hCCHH
Confidence 345789999999988776 4677899999999999999999999988743 111 12221 12 33355
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
...++-+.....| -++....++.-.|+++++.++|.+....+.... .....|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 4444444444333 124455666777888888888876643321111 111245566666666554
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.62 E-value=0.39 Score=43.90 Aligned_cols=222 Identities=12% Similarity=0.006 Sum_probs=104.1
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccC-------CchHHHHHH-
Q 040965 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-------VLSVFMGTA- 106 (311)
Q Consensus 35 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~- 106 (311)
+....|+.++++.+++.....+ ...+...-..-+-++.... .|..+++..++...+...- .+....-..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~--~s~~~~ik~GAllaLGli~-ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS--RASSRFIKGGSLYGLGLIY-AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS--CCSCHHHHHHHHHHHHHHT-TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 3456677777777777665421 1123333222222222222 3334456666665554321 111222222
Q ss_pred -HHHHHhhcCCHHHHHHHHHHccc-chHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 107 -LIDLYGKVGCLERAIRVFKSMVI-KDVC----TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 107 -l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
|..+|...++ +++.+.+..+.. .+.. .-.++...+.-.|+.+....++..+.+.. .-+..-...+.-++...
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 3333333444 344444444432 2211 11233344556677777777777665531 11222222233334467
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhH--HHHHHHHHhcCCHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChhHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPD--ASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
|+.+.+..+++.+... ..|....- .++.-+|+..|+.....++++.+...++ +.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 7777777777777642 23333222 2334456677777766667776621222 2222222223445566666666
Q ss_pred HHHHHHh
Q 040965 257 VGRRLLE 263 (311)
Q Consensus 257 ~~~~~~~ 263 (311)
+++.+.+
T Consensus 616 lv~~L~~ 622 (963)
T 4ady_A 616 IVQLLSK 622 (963)
T ss_dssp HTTTGGG
T ss_pred HHHHHHh
Confidence 6655443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.084 Score=41.04 Aligned_cols=58 Identities=12% Similarity=-0.010 Sum_probs=26.6
Q ss_pred HHHHHHHHHHc-----cccHHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhc-CCHHHHHHHHHhC
Q 040965 169 TFVAVLTACAR-----AQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRA-GLLSEAKEFMRSM 229 (311)
Q Consensus 169 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 229 (311)
.|..+...|.. .|+.++|.+.|++.++ +.| +..++....+.++.. |+.+++.+.+++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444444444 2555555555555543 233 133444444444442 5555555555544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.55 E-value=0.03 Score=37.47 Aligned_cols=90 Identities=11% Similarity=-0.076 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CcchHHHHHHHHHhcCChhH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE---AKEFMRSM-PFE-P--DASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 253 (311)
..+..+.+-|...... +. |+..+--.+..++.+..+... ++.+++.+ ... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 22 444444445555555554443 55555555 211 2 11223344456778888888
Q ss_pred HHHHHHHHHhcCCCchhHH
Q 040965 254 CHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~ 272 (311)
|.+.++.+++..|.+..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 8888888888888776443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.53 E-value=0.019 Score=39.55 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHccccH------HHHHHHHHHhhccCCCccchh-hHHHHHH------HHHhcCCHHHHHHHHHhC-CC
Q 040965 166 NEITFVAVLTACARAQLV------ELGLELFHSMLGKFEVVPIME-HYGCVVD------LLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-~~ 231 (311)
|..+|-..+...-+.|++ ++..++|+++.. .++|+.. .|...|. .+...++.++|.++|+.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777777888 888888888876 4566431 1111111 223457888888888877 21
Q ss_pred --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 232 --EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 232 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
+- ...|......-.++|+++.|.+++.+++++.|.+.......+.-
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 11 34444444555678888888888888888888876666555543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.53 E-value=0.1 Score=35.92 Aligned_cols=100 Identities=10% Similarity=0.154 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHHHHhcCCH------hHHHHHHHHhhcCCCCCCCch----HHHHHHHHHhhhhhhcCcchhHHHHHHHH
Q 040965 23 KRDVVSWTSIINGFVRNGCF------GEAICVFKNMMGNVNLVRPNE----ATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92 (311)
Q Consensus 23 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 92 (311)
..|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--|+.+..-++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34788888888888888988 8888899888774 56653 11222221122222223455555555555
Q ss_pred hhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (311)
++.+ +-=..+|......-.+.|++..|.+++..
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4431 11134444444444444444444444443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.048 Score=48.65 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcccc-HHHHHHHHHHhhccCCCccchhhH--HHHHHHHHhcCC-HHHHHHHHHhC---------CCCCCc
Q 040965 169 TFVAVLTACARAQL-VELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGL-LSEAKEFMRSM---------PFEPDA 235 (311)
Q Consensus 169 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~---------~~~p~~ 235 (311)
....++..+...++ .+.|..+|+++... .|...++ ..++..+...++ --+|.+++.+. ...+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 34555666666666 58899999998764 4433332 223333333322 22344443322 112211
Q ss_pred c-----------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 236 S-----------VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 236 ~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
. ....-...+...|+++.|+.+-+++....|.+-.+|..|..+|...|+|+.|+-.++.+.
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 111112446789999999999999999999999999999999999999999999998873
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.89 E-value=5.7e-07 Score=74.02 Aligned_cols=242 Identities=11% Similarity=0.083 Sum_probs=138.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
.+.+|+.|..+....+++.+|++.|-+.. |...|..++.++.. .|.+++-...+....+..-.| .+=
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------Dps~y~eVi~~A~~---~~~~edLv~yL~MaRk~~ke~--~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANT---SGNWEELVKYLQMARKKARES--YVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------CCCSSSHHHHHTTT---SSCCTTHHHHHHTTSTTCCST--TTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--------ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhccc--ccH
Confidence 45578899999999998888887664431 44456667765443 666888888887666653333 333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--------------------CCC
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--------------------GLR 164 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~ 164 (311)
+.|+-+|++.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+... .-.
T Consensus 120 teLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999988776555442 344444444555555555555555444432110 001
Q ss_pred CcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHH
Q 040965 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALL 242 (311)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~ 242 (311)
-+..||..+-.+|...+.+..|...--.++- .|+ -...++..|.+.|.+++-+.+++.. |.+ .....|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv----had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 2445666666677776666665544333331 122 2334556666777777777666665 322 3445566665
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
-.|++- ++++.++.++.... .-+.+ .++++|.+..-|.++.-++..
T Consensus 271 ILYsKY-~PeKlmEHlklf~s-riNip----KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS-RVNIP----KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS-SSCCT----TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHH-hccHH----HHHHHHHHHhhHHHHHHHHhc
Confidence 555443 44544444443221 12222 466777777777777666553
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.69 Score=38.75 Aligned_cols=185 Identities=8% Similarity=0.025 Sum_probs=116.4
Q ss_pred CChHHHHHHHHHhccc---------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh-h
Q 040965 9 GDMDSAILLFENMLKR---------DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV-N 78 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~ 78 (311)
|++++|++.+-.+.+. .......++..|...|+++...+.+..+....+ ..+.. ...++..+.... .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhHHH--HHHHHHHHHHHHhc
Confidence 6788888777555321 355678899999999999999888877655331 33332 223333332211 1
Q ss_pred cCcch--hHHHHHHHHhh--cc-CCc---hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHH
Q 040965 79 EGGLY--LGKQVHGYILR--NE-IVL---SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISS 141 (311)
Q Consensus 79 ~~~~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~ 141 (311)
....+ .-..+.+.... .| +-. .......|...|...|++.+|..++.++... -...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11111 12222222211 11 111 2334467889999999999999999987321 24567777888
Q ss_pred HHcCCCHHHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 142 LASNSREKEALVMFDEMKE----KGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
|...+++.+|..++++... ....|+ ...+...+..+...+++.+|-..|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999998642 222232 235566677788889999998888887654
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.039 Score=45.37 Aligned_cols=67 Identities=16% Similarity=-0.013 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH-----ccCCCCCc
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE-----AGIRKIPA 305 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 305 (311)
..++..+...|+.+++...+..+...+|-+...+..++.++.+.|+..+|.+.|+++.+ .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556667788888888888888888888777888888888888888888888877653 47766554
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.69 E-value=0.084 Score=35.32 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH---HHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL---GLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 220 (311)
.....+.+.|.+....|. |+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334445555555544443 555665566666776665554 77777777654 2 23 2334445566777888888
Q ss_pred HHHHHHHhC-CCCCCc
Q 040965 221 EAKEFMRSM-PFEPDA 235 (311)
Q Consensus 221 ~A~~~~~~~-~~~p~~ 235 (311)
+|.+.++.+ .+.|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 888887777 555644
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.84 Score=38.24 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-----CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCch----hH
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM-----PFEPD---ASVLGALLGACKIHGAVDLCHEVGRRLLE---LQPKHC----GR 271 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~ 271 (311)
..|...|...|++.+|.+++..+ +..+. ...+...++.|...+++..|..+++++.. ..+.++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777666 11111 12344455667777777777777777642 112211 24
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
|...+..+...++|.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666677777766666554
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.11 E-value=2 Score=39.48 Aligned_cols=253 Identities=10% Similarity=-0.043 Sum_probs=136.5
Q ss_pred hhhcCChHHHHHHHHHhcc----ccHH--HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc----hHHHHHHHH-Hh
Q 040965 5 YVKNGDMDSAILLFENMLK----RDVV--SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN----EATYVSVLS-SC 73 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~ll~-~~ 73 (311)
....|+.+++..+++.... .+.. .=..+.-+....|..+++..++.........+.-+ .......+. +.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456788888888877654 2222 22233334455555567888777766432000001 111122221 11
Q ss_pred hhhhhcCcchhHHHHHHHHhhccCCchH--HHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCH
Q 040965 74 AGLVNEGGLYLGKQVHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSRE 148 (311)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 148 (311)
...+ .+ -+++.+.+..++...- +.. ..-.+|...+...|+-+-...++..+.+. +..-...+.-++...|+.
T Consensus 464 a~~G-S~-~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMG-SA-NIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTT-CC-CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HhcC-CC-CHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 1122 22 3455566655554321 111 12224455566778877777777665332 222233344455578899
Q ss_pred HHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 149 KEALVMFDEMKEKGLRANEITF--VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 9999998888764 23322222 23445688899988888899888763 3334444444445555677777777777
Q ss_pred HhC--CCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 040965 227 RSM--PFEPDASVLGALLGACKIHGAV-DLCHEVGRRLLE 263 (311)
Q Consensus 227 ~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 263 (311)
+.+ ...|.+..-..+.-+....|.. .++...+..+..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 766 2234443333444444555544 567778887763
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.06 E-value=7.4e-06 Score=67.61 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=151.4
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
++.+.|++.+|++.| +...|+..|..+|.+..+.|.+++-++.+....+.. -.|... +.|+-+|+...+.++++
T Consensus 63 AqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID--teLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 63 AQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE--TELIFALAKTNRLAELE 136 (624)
T ss_dssp HTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT--HHHHHHHHTSCSSSTTT
T ss_pred HHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH--HHHHHHHHhhCcHHHHH
Confidence 344556666666555 233477788899999999999999999998887755 344433 45676777665443332
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc------------------------ccchHhhHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM------------------------VIKDVCTWNAMI 139 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------~~~~~~~~~~l~ 139 (311)
+. + -.||..-.....+-|...|.++.|.-+|..+ ...++.||..+-
T Consensus 137 ef---l-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 137 EF---I-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp ST---T-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred HH---H-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 21 1 1244433445666666666666666666544 122678999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
.+|...+++.-|.-.--.+.- .|| -...++..|-..|.+++-+.+++.-+.. -....-.|+-|.-.|++- ++
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CH
Confidence 999999988777655444432 222 2335677889999999999999998832 245667888888777654 67
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 220 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++-++.++-.-.+-|.+ .++++|....-+.++.-++.+.-
T Consensus 279 eKlmEHlklf~sriNip---KviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIP---KVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp THHHHHHTTSSSSSCCT---TTHHHHTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHH---HHHHHHHHHhhHHHHHHHHhcch
Confidence 77777776652222222 35778877777777777766543
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.84 E-value=0.13 Score=36.17 Aligned_cols=110 Identities=7% Similarity=-0.044 Sum_probs=53.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHccc-----ch-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCC-cHHHHHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVI-----KD-------VCTWNAMISSLASNSREKEALVMFDEMKEKG-LRA-NEITFVA 172 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ 172 (311)
-+..+...|.++.|+-+.+.+.. ++ ..++..+.+++...|++..|...|++..+.. ..+ +..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35556666777777766665421 11 1244556666777777777777777654321 111 1111111
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+. .....+. .....++.+.--.+..+|.+.+++++|+.+++.++
T Consensus 106 ~~---~~ss~p~-----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TG---NSASTPQ-----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc---ccCCCcc-----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10 0000000 00122333444456677777888888888777773
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.83 E-value=1.1 Score=40.24 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=74.2
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC-HHHHHHHHHHccc-----------chH----------hhHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVFKSMVI-----------KDV----------CTWNAMI 139 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-----------~~~----------~~~~~l~ 139 (311)
.+.+..+++++.+..+..+......++..+...++ --+|.+++.+..+ .+. .....-.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57899999998887543333333344444444332 2345555544421 111 1122224
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
..+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567789999999999998876 55 57899999999999999999999988873
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.62 E-value=0.48 Score=30.04 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 142 LASNS-REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 142 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
+-+.. |.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+.+.. ..+|..+++
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33444 566777788888888888999999999999999999999999999888764433 445777664
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.60 E-value=1.4 Score=35.14 Aligned_cols=169 Identities=14% Similarity=0.069 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHH----HHHHHcCCCCcHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF----DEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
.+|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++. +-+.+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45567777788999999999886432 33455667766655554 4555678888888888887776
Q ss_pred HccccHH-HHHHHHHHhhcc---CC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 040965 178 ARAQLVE-LGLELFHSMLGK---FE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251 (311)
Q Consensus 178 ~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 251 (311)
.....-+ .=.++++++++- +| ..-++.....+...|.+.+++.+|...|- .+..+....+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6544311 112233333211 12 22355566778899999999999988884 3434444566555544433332
Q ss_pred hHHHHHHHHHHhcCCCchhHHH-HHHHHHhccchhHHHHHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYV-VLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|.....|. ..+--|...++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 344556777788888887776654
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.59 E-value=0.67 Score=38.06 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+..+...|++++|...+..+.... +.++..+..++.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555554444331 224445555555555555555555554443
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.77 E-value=0.91 Score=30.98 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=47.5
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-Cc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 200 VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEP-DA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.|+..+--.+..++.+..+ ..+++.+++.+ ...| +. .....|.-++.+.|++++|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555556666666554 44677777777 2234 22 333445567888888888888888888888887643
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.70 E-value=1.2 Score=42.36 Aligned_cols=122 Identities=5% Similarity=-0.167 Sum_probs=83.9
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC---------------
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPD--------------- 234 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------------- 234 (311)
.++..+...+..+.+.++..-.. .++...-.+..+|...|++++|.++|++. ++..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666677776665443332 13323345677888999999999999887 22111
Q ss_pred --------cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC-Cch----hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 235 --------ASVLGALLGACKIHGAVDLCHEVGRRLLELQP-KHC----GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 235 --------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..-|..++..+.+.+.++.+.++-+.+++..+ ++. ..|..+...+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 12356677788889999999999888887443 322 257788899999999999998887765543
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.41 E-value=1.2 Score=30.05 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 142 LASNS-REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 142 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
+.+.. |.-+..+-++.+...+..|+.......+.+|.+.+++..|.++|+-++.+.+.. ..+|..+++
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq--------- 130 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ--------- 130 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH---------
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH---------
Confidence 33444 556677788888888899999999999999999999999999999998764433 446777764
Q ss_pred HHHHHHHhCCC
Q 040965 221 EAKEFMRSMPF 231 (311)
Q Consensus 221 ~A~~~~~~~~~ 231 (311)
+-.-+++++|+
T Consensus 131 ElkPtl~ELGI 141 (152)
T 2y69_E 131 ELRPTLNELGI 141 (152)
T ss_dssp HHHHHHHHHTC
T ss_pred HHhhHHHHhCC
Confidence 33455555543
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.13 E-value=2.2 Score=40.57 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------------------------hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK--------------------------DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
....-.+..+|...|++++|...|.+.... -..-|..++..+-+.+.++.+.+.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333345778899999999999999887111 012366777888888999988888
Q ss_pred HHHHHHcCCCCc----HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH-------
Q 040965 155 FDEMKEKGLRAN----EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK------- 223 (311)
Q Consensus 155 ~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------- 223 (311)
-+...+...+-+ ...|..+..++...|++++|...+-.+... ..+ ......|+...|..|+.+.-.
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl 998 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLK--KSCLLDFVNQLTKQGKINQLLNYSMPTL 998 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSC
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHH--HHHHHHHHHHHHhCCChhhhhCCCCccH
Confidence 777665422112 125788889999999999998888777543 333 335666777666666554433
Q ss_pred -----HHHHhC--C--CCCCcchHHHHHHH-HHhcCChhHH-HHHHHHHHhc
Q 040965 224 -----EFMRSM--P--FEPDASVLGALLGA-CKIHGAVDLC-HEVGRRLLEL 264 (311)
Q Consensus 224 -----~~~~~~--~--~~p~~~~~~~l~~~-~~~~g~~~~a-~~~~~~~~~~ 264 (311)
+++..- . ...+...|..++.+ +..+|++..| ..+|+.+.++
T Consensus 999 ~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 999 RQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 333221 0 11122334444444 5566666544 5567776653
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.01 E-value=3.2 Score=34.01 Aligned_cols=166 Identities=10% Similarity=-0.033 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC--c--
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN---EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV--L-- 99 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-- 99 (311)
.+...|...|.+.|+.++..+++.....--. .-|- ......++..+.... +..+.-.++..+..+..-. .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kak~~k~v~~l~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS-SISKAKAAKLVRSLVDMFLDMD--AGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG-GSCHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999888754211 1222 233445666554433 2244444444444332100 0
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcH
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANE 167 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~ 167 (311)
...+-..++..|...|++.+|.+++.++... -...+..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1112236789999999999999988887321 2345667778889999999999999887543 232333
Q ss_pred HHHHHH----HHHHH-ccccHHHHHHHHHHhhc
Q 040965 168 ITFVAV----LTACA-RAQLVELGLELFHSMLG 195 (311)
Q Consensus 168 ~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~ 195 (311)
.....+ .-.+. ..+++..|...|-+..+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 322211 22356 78899999888877654
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.93 E-value=1.1 Score=28.33 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=63.2
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3447788888888777664 222223345567788999999999999999999998776554 678888888888888
Q ss_pred HHcCCCCcHHHHH
Q 040965 159 KEKGLRANEITFV 171 (311)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (311)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 44444443
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.77 E-value=0.44 Score=32.06 Aligned_cols=72 Identities=10% Similarity=-0.042 Sum_probs=47.0
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 200 VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.|+..+--.+..++.+..+ ..+++.+++++ ...|. ...+-.|.-++.+.|++++|.+..+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4454454445556665543 44677777777 32342 2344455567888899999999999888888887644
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=92.68 E-value=1.2 Score=28.19 Aligned_cols=88 Identities=9% Similarity=0.014 Sum_probs=61.4
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3447788888887777664 222223335567788999999999999999999988776554 567778888888777
Q ss_pred HHcCCCCcHHHHH
Q 040965 159 KEKGLRANEITFV 171 (311)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (311)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 44444443
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.67 E-value=0.94 Score=31.82 Aligned_cols=115 Identities=12% Similarity=-0.070 Sum_probs=63.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccch-------hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-Ccch
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-------EHYGCVVDLLGRAGLLSEAKEFMRSM----PFEP-DASV 237 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~ 237 (311)
+..-+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. ..-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444566777788888887777755432233331 24556667778888888888877774 1111 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
...+. . ...... -. ..+.+...-..+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110 0 000000 00 012344566779999999999999999987653
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.64 E-value=1.2 Score=28.25 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHH
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALL 242 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 242 (311)
+.-+..+-++.+... .+.|++....+.+.+|.+.+++..|.++|+.+ +..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444555555555544 56666666666667777777777777776666 2223333454444
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.06 E-value=3.2 Score=31.79 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=76.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHh
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGR 215 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 215 (311)
..+.+.|+.++|++....-++.. +.|...-..++..+|-.|++++|.+-++...+ ..|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 45678899999998888877763 44777888888889999999999988888764 3444 2334444432
Q ss_pred cCCHHHHH-HHHHhC---CC-CCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCch
Q 040965 216 AGLLSEAK-EFMRSM---PF-EPDASVLGALLGAC--KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 216 ~g~~~~A~-~~~~~~---~~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+... ++|.-- ++ .....-...++.+. ...|+.++|..+-.++.+..|..+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 2222 222211 11 11223344555553 457899999999998887766544
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.33 E-value=1 Score=28.47 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHhc-cccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 9 GDMDSAILLFENML-KRDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 9 g~~~~A~~~~~~~~-~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
.+.++|..+-+.+. .++ .-..+|| ..+...|++++|..+.+.. ..||...|..+-.. + .|..+++
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~--r---lGl~s~l 88 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL------AYPDLEPWLALCEY--R---LGLGSAL 88 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS------CCGGGHHHHHHHHH--H---HTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHH--h---cccHHHH
Confidence 45677877777763 334 4444455 4467889999999888776 68999988887763 3 4447888
Q ss_pred HHHHHHHhhccCCchHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+..+...| .|....|.
T Consensus 89 e~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 89 ESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 88888888888 55555554
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.76 E-value=2.7 Score=28.36 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+..+-++.+... ++.|++....+-+.+|.+.+++..|.++|+-+
T Consensus 69 ~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 69 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444433 55566666666666666666666666666655
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.44 E-value=2.8 Score=28.17 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHHccc---cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 164 RANEITFVAVLTACARAQ---LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
.|+..+-..+..++.++. +..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ .+.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444444444444443 334566666666543 21112233444555666666666666666666 5555543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.29 E-value=4 Score=29.70 Aligned_cols=50 Identities=6% Similarity=-0.138 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhC---CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 216 AGLLSEAKEFMRSM---PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 216 ~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
.+....+.++|..| ++-. -+.-|......+...|++++|..+|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34355666666666 3322 33445666666677777777777777777644
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.80 E-value=0.92 Score=28.62 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHhc-cccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 9 GDMDSAILLFENML-KRDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 9 g~~~~A~~~~~~~~-~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
.+.++|..+-+.+. .++ .-..+|| ..+...|++++|..+.+.. ..||...|..+-.. + .|..+++
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~--r---lGl~s~l 87 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN------PWPALEPWFALCEW--H---LGLGAAL 87 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC------CCGGGHHHHHHHHH--H---TTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHH--h---cccHHHH
Confidence 45677877777763 334 4444455 4567889999998887766 68999998887763 3 4448888
Q ss_pred HHHHHHHhhccCCchHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+..+...| .|....|.
T Consensus 88 e~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 88888888888 55555554
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=5.5 Score=33.10 Aligned_cols=97 Identities=7% Similarity=-0.098 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc---cCCchHH--
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---EIVLSVF-- 102 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-- 102 (311)
++..+...|.+.|++++|.+.|.++...-.+..--...+-.++..+.. .+++..+...+.++... +..|+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~---~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF---YNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 334455556666666666666666554321011122333334433222 33355555555554332 2122211
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
....-+..+...+++..|-..|-+.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1111122234456666666665554
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.93 E-value=7.3 Score=30.73 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=106.3
Q ss_pred chhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHH----HH
Q 040965 82 LYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM----FD 156 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 156 (311)
+++.+.-++.-++.|--- -...|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444443111 2345667777788888888888876533 3345566777666664 45
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHH-HHHHHHHHhhcc---CC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVE-LGLELFHSMLGK---FE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
...+.+++++......++..+.....-+ .=.++++++++- .+ ..-++.....+...|.+.|++.+|...|- .+
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~ 160 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LG 160 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TS
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hC
Confidence 5556788888888888887765532111 112333333321 01 12355677788888899999999888775 32
Q ss_pred CCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCchhHH-HHHHHHHhccchhHHHHHHHHHHHH
Q 040965 231 FEPDASVLGALLGACKIH---GAVDLCHEVGRRLLELQPKHCGRY-VVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..-+...+..++.-+... |. |.....| ...+--|...|+...|..+++...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~---------------~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIE---------------DSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCC---------------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 111334444444333332 22 2222222 2333446677788888888877653
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.72 E-value=1.2 Score=34.02 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
....+.|++++|++....- +..| |...=..|+..++-.|+++.|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3455778888888776665 4455 444445667778888888888888888888888743
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.37 E-value=2.9 Score=34.78 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=56.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccC-CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHH--
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKF-EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGAL-- 241 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l-- 241 (311)
+...+...|.+.|+++.|.+.+.++.... +..--...+-.++..+...+++..+...++++ ...++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777778888888888887776542 11122345666677777778888877777766 112222211111
Q ss_pred --HHHHHhcCChhHHHHHHHHHHh
Q 040965 242 --LGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 242 --~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...+...+++..|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1113356677777776666654
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=88.07 E-value=4.4 Score=27.16 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
..++.-|...|+.++|...++++..| ...+...+..++-+.+ ..+.+..++..+.+.|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 56788899999999999999999766 3344555556666653 24677888888887776654443
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.24 E-value=5.7 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
...++.-|...|+.++|...++++..| ...+...+..++-+.+ ..+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 356788899999999999999999766 3344555566666543 35667788888887776654443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.26 E-value=6.1 Score=26.94 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHcccc---HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 164 RANEITFVAVLTACARAQL---VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
.|+..+-..+..++.++.+ ..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ ...|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3444444444444444443 34555566655543 11112223334445566666666666666665 445544
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.18 E-value=7.6 Score=27.26 Aligned_cols=30 Identities=0% Similarity=-0.086 Sum_probs=17.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..|......+-..|++.+|..+|+..++..
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344555555566666666666666666543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.69 E-value=7.8 Score=26.78 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 252 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
+....+|..|.. ++......|...+..+...|++++|.++|+.=++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777764 445555567777777777777777777777766665554
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.65 E-value=15 Score=29.25 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
.|.++..-|.+.+++++|++++..-.. .++.. ...... .|.+.-+++-..+.+++++......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~-~Q~~sg--~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRS-GQGGSG--GDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHT-TCHHHH--HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHC-CCcchH--HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455666667777777777776544311 11110 000001 33344444555555666666666666
Q ss_pred HHHHhhcCCH--------HHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 108 IDLYGKVGCL--------ERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 108 ~~~~~~~g~~--------~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
+..+.....- ++|+..-.+. ..-|+.....+...|.+.+++.+|...|- .|-.++...|..++..
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 6665554431 1222222211 11256667777788888888888777762 2334444555444433
Q ss_pred H
Q 040965 177 C 177 (311)
Q Consensus 177 ~ 177 (311)
+
T Consensus 177 w 177 (336)
T 3lpz_A 177 W 177 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.82 E-value=9 Score=28.41 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..|......+...|++.+|..+|+..++..
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445666666677777777777777777644
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.12 E-value=23 Score=30.20 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH-------hhHH-HHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV-------CTWN-AMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
-..++|.+++.|...+.++.|..+..+..-|.. ..|. -+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888888888888888888888755521 1221 2345566788888888888876654
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.89 E-value=20 Score=29.38 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=152.4
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHHHhc-CCHhHHHHHHHHhhcCCCCCCCchHHH-HHHH-
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--------RDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNEATY-VSVL- 70 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~p~~~~~-~~ll- 70 (311)
...|.+.|+.++...++..... .....-..+++.+... +..+.-.++..+..+.. .-+..+| ..-+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r~flr~~l~ 102 (394)
T 3txn_A 26 GELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4678899999999999988722 1445677888888764 33444445544444321 1111223 1111
Q ss_pred -HHhhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCCHHHHHHHHHHccc------chHhhH---
Q 040965 71 -SSCAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGCLERAIRVFKSMVI------KDVCTW--- 135 (311)
Q Consensus 71 -~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~--- 135 (311)
....-+...|++.+|.+++..+.+.=-. .-..++..-+..|...+++.++...+.+... +++...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 2222333478899999998888764111 1245566677889999999999988876621 222221
Q ss_pred -HHHHHHHH-cCCCHHHHHHHHHHHHHc-C-C-CC---cHHHHHHHHHHHHccccHHHHHHHHH-HhhccCCCccchhhH
Q 040965 136 -NAMISSLA-SNSREKEALVMFDEMKEK-G-L-RA---NEITFVAVLTACARAQLVELGLELFH-SMLGKFEVVPIMEHY 206 (311)
Q Consensus 136 -~~l~~~~~-~~~~~~~a~~~~~~m~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 206 (311)
-.-.-.+. ..++|..|...|-+..+. . . .| +...|..+. +..... ..+...++. .....+ ..|....+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~~~-r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIMLGQ-SDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHTTC-GGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHcCC-HHHHHHHhcccccccc-CCccHHHH
Confidence 12233456 789999999888776432 1 1 11 122343333 222222 222222221 211211 34666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSMP--FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
..++.+| ..+++.+..++++... +..|......+ ..+.+ .--...+.++ ..|-..-.+..+...+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNLCRI--IEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHHHHH--HTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHHHHH--hHhhceeeHHHHHHHHCc--C
Confidence 6777765 6678887777777762 33343321111 11000 0001111111 234444456666666543 5
Q ss_pred hHHHHHHHHHHHHccC
Q 040965 285 WNRATDLRKAMVEAGI 300 (311)
Q Consensus 285 ~~~A~~~~~~m~~~~~ 300 (311)
.++++..+-+|+..|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6788888888887664
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.32 E-value=18 Score=28.51 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFK 125 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (311)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34455555666666666666665554
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.57 E-value=25 Score=32.72 Aligned_cols=51 Identities=4% Similarity=-0.147 Sum_probs=29.8
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++..|...|..+-|.++..- .+.++..--.+..+|...|++++|.++|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666655443221 1223222234667778888888888888877
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.74 E-value=17 Score=25.11 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=28.7
Q ss_pred HHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 120 AIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 120 A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
+.++|..|... -...|......+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 55555555333 3344556666666667777777777776666666643
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.83 E-value=21 Score=25.74 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=110.2
Q ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHH
Q 040965 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQV 88 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~ 88 (311)
++.+....+.+.+..++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...+ ...+...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~----~~~~~~~ 85 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK-----DEDAWVRRAAADALGQIG----DERAVEP 85 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSCHHHHHHHHHHHHHHC----CGGGHHH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc-----CCCHHHHHHHHHHHHhhC----CHHHHHH
Confidence 33444455555566677777777888888888744 4444445543 245444444444444433 2344555
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
+..+++ .++..+-...+.++.+.|+.+....+..-+..++..+-...+.++...|+.+ +...+..+.+ .++..
T Consensus 86 L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 86 LIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp HHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 555553 3456666677788888887655555555556677777777777777777643 4455555543 45666
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
.-...+.++.+.+. ..+...+..+.+. ++..+-...+.++.+.+
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 66777777777776 4566666666643 34444555555555444
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.74 E-value=44 Score=29.57 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=23.0
Q ss_pred hhhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHH
Q 040965 2 IDGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFV 37 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 37 (311)
|-.|.|.|++++|.++.++.... -...+...+..|+
T Consensus 159 IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 159 IFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 55688999999999999877321 1134555555555
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.57 E-value=29 Score=27.26 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc--hhHHHHHHHHHHHHccCC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE--RWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~ 301 (311)
...++.-|...|+.++|.+.++++.--...+.-++..+..++.+.+ ..+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3456666777778888877777764211011123334444444432 244456666666655554
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.55 E-value=23 Score=25.55 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=101.7
Q ss_pred hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHH
Q 040965 43 GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIR 122 (311)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 122 (311)
.++...+-.... .++...-...+.++...+ ...+...+..+.+. ++..+-...+.++.+.++.+....
T Consensus 18 ~~~~~~L~~~L~-----~~~~~vR~~A~~~L~~~~----~~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~ 85 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-----DDSYYVRRAAAYALGKIG----DERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEP 85 (211)
T ss_dssp GGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHC----CGGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHH
T ss_pred HhHHHHHHHHHc-----CCCHHHHHHHHHHHHHhC----CccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHH
Confidence 444444444443 244444444444333333 23455555555543 355555666777777777555555
Q ss_pred HHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc
Q 040965 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI 202 (311)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (311)
+.+.+..++...-...+.++.+.++.+ +...+.++.+ .++...-...+.++...|..+ +...+..+.+ .++
T Consensus 86 L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~ 156 (211)
T 3ltm_A 86 LIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DED 156 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCC
Confidence 555566677777777777887777754 4444444443 456666667777777777654 4555555554 345
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 247 (311)
..+-...+.++.+.+.. ++...+..+-..++...-...+.++..
T Consensus 157 ~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 157 GWVRQSAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 55566667777777764 455555444113444444444444433
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.42 E-value=53 Score=28.84 Aligned_cols=50 Identities=4% Similarity=-0.042 Sum_probs=21.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
+.|+++.|...|+.|..... ......--+..++...|+.++|..+|..+.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555555554433211 112222233334444555555555555443
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.86 E-value=38 Score=27.33 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
...++.-|...|+.++|...++++..| ...+...+..++-+.+ ..+.+.+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 355666777777777777777777655 2333444444554433 23456666666666665544433
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=70.53 E-value=37 Score=26.68 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSR--EKEALVMFDEMKEKGLRANEITF 170 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 170 (311)
...++.-|...|+.++|...++++..| ...+...+..++-+.++ .+.+.+++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 356778888889999999999998766 23445555555555433 45667888888777766544433
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.00 E-value=19 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
.....+..+.+.|+.++|.++|-
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHH
Confidence 34444556666666666666653
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=69.33 E-value=30 Score=25.67 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=30.9
Q ss_pred HHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 119 RAIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 119 ~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
.+..+|..|... -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 445555555332 3455666666777777777777777777776666643
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.50 E-value=32 Score=26.32 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=5.7
Q ss_pred hcCChhHHHHHHHH
Q 040965 247 IHGAVDLCHEVGRR 260 (311)
Q Consensus 247 ~~g~~~~a~~~~~~ 260 (311)
..|..+-+..+++.
T Consensus 170 ~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 170 KNGHVDMMILLLDY 183 (285)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcChHHHHHHHHHc
Confidence 34444444444333
No 291
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=68.00 E-value=5.5 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
++|...|.+|++..++.|+. +|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~w-sweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW-SFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC-cHHHHHHHh
Confidence 45666666666665555554 566555554
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.17 E-value=30 Score=24.27 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
..|......+-..|++.+|.++|+.-++.+..|-.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34455555555566666666666666665555543
No 293
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.05 E-value=38 Score=25.46 Aligned_cols=143 Identities=12% Similarity=0.006 Sum_probs=62.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH------------HHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI------------TFV 171 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------~~~ 171 (311)
.+...+..|+.+-+..+++.-..+ +...++.+. ..+..|+.+- ++.+.+.|..++.. .-.
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 344455667776666665543222 222222332 2344566443 34444444443311 001
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCcc---chhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCcch--HHHHHH
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVP---IMEHYGCVVDLLGRAGL---LSEAKEFMRSMPFEPDASV--LGALLG 243 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~--~~~l~~ 243 (311)
+.+...+..|+.+-+..+++.. +..+ +....+.+..+. ..++ ..+..+++-+.+..++... -...+.
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 2233344566666555554432 2222 222233333333 3333 2455555555544443321 112333
Q ss_pred HHHhcCChhHHHHHHH
Q 040965 244 ACKIHGAVDLCHEVGR 259 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~ 259 (311)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4456677776666665
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.75 E-value=18 Score=30.79 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch--hhH-HHHHHHHHhcCCHHHHHHHHHhC
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHY-GCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
...++.++..|...+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456666677777777777777776663110001111 122 12344555667777776666654
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.74 E-value=38 Score=25.38 Aligned_cols=90 Identities=7% Similarity=-0.094 Sum_probs=39.3
Q ss_pred HHHHHHccccHHHHHHHHHHhhccC-CCcc----chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 040965 173 VLTACARAQLVELGLELFHSMLGKF-EVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 247 (311)
-++.+....++++|...+++..+.. +.++ ........+..-.....-.-+..+.+++...++.......+..+.+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~r 103 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMIK 103 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3556666677777777666554321 1111 0011111122222222222233333333213333444455555666
Q ss_pred cCChhHHHHHHHHHH
Q 040965 248 HGAVDLCHEVGRRLL 262 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~ 262 (311)
.|+-++|.++|=+..
T Consensus 104 Lg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 104 LGLPEQALDLFLQNR 118 (235)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 666666666665544
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.88 E-value=27 Score=23.28 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCc-hhHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGA--VDLCHEVGRRLLELQPKH-CGRYVVLSNI 278 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~-~~~~~~l~~~ 278 (311)
....++.-|...|+.++|.+.+++++. |.- .....+..++-+.++ .+.+..++..+...+.-+ ......+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 356788889999999999999999963 311 122223333333322 355667777776544222 2233333333
Q ss_pred Hhccc----hhHHHHHHHHHHHHccC
Q 040965 279 HAGLE----RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g----~~~~A~~~~~~m~~~~~ 300 (311)
+.... +.-.|..++.++..+.+
T Consensus 88 ~~~l~Dl~lDiP~a~~~l~~~v~~ai 113 (129)
T 2nsz_A 88 YNEIPDINLDVPHSYSVLERFVEECF 113 (129)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HhhChHhhcCccchHHHHHHHHHHHH
Confidence 33333 33346666666665544
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.88 E-value=36 Score=24.79 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc
Q 040965 145 NSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 201 (311)
.+...++.++|..|...|+-- -...|......+...|++.+|..+|+.-++. +..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 444667888888888776554 3556777777778888888888888887776 5555
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.26 E-value=34 Score=24.33 Aligned_cols=162 Identities=7% Similarity=-0.073 Sum_probs=76.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhh
Q 040965 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR 94 (311)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 94 (311)
..+++.+..+|...-...+.++.+.+..+.. ..+.++.. .++...-...+.+....+ ...+...+..++.
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~-----~~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l~ 86 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAV-EPLIKALK-----DEDAWVRRAAADALGQIG----DERAVEPLIKALK 86 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT-----CSSHHHHHHHHHHHHHHC----CGGGHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHc-----CCCHHHHHHHHHHHHhhC----CHHHHHHHHHHHc
Confidence 3344444556666666666777777664433 33333332 234333333333333322 2233444444443
Q ss_pred ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
.++..+-...+.++.+.|+.+....+...+..++..+-...+.++.+.++. ++...+..+.. .++...-...+
T Consensus 87 ---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 87 ---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp ---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 234455555566666666644333444444445555555555555555543 23333333332 23545555555
Q ss_pred HHHHccccHHHHHHHHHHhh
Q 040965 175 TACARAQLVELGLELFHSML 194 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~ 194 (311)
.++...|.. .+...+..+.
T Consensus 160 ~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 160 DALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHhCch-hHHHHHHHHH
Confidence 555555543 3444444444
No 299
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.90 E-value=26 Score=25.75 Aligned_cols=18 Identities=6% Similarity=0.145 Sum_probs=9.5
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 040965 212 LLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~ 229 (311)
.|.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 344555555555555554
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.70 E-value=39 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=13.2
Q ss_pred HHHHHHHHHHccccHHHHHHHHHH
Q 040965 169 TFVAVLTACARAQLVELGLELFHS 192 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~ 192 (311)
.++.+...|...|+.++|+..+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
Confidence 344445555566666666655544
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.86 E-value=36 Score=23.44 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCc-hhHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGA--VDLCHEVGRRLLELQPKH-CGRYVVLSNI 278 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~-~~~~~~l~~~ 278 (311)
....++.-|...|+.++|.+.+++++. |.- .+...+..++-+.++ .+.+..++..+...+.-+ ......+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 456788889999999999999999963 311 122223333333222 345666777776543222 2233333333
Q ss_pred Hhccc----hhHHHHHHHHHHHHccC
Q 040965 279 HAGLE----RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g----~~~~A~~~~~~m~~~~~ 300 (311)
+.... +.-.|..++.++..+-+
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~~ai 115 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVEECF 115 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHhChHhccCccchHHHHHHHHHHHH
Confidence 33333 33356666666665443
No 302
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.18 E-value=1e+02 Score=27.37 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=97.4
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
++.-.|+|+.|+..+-+...-+.+.+...+. ..|-... =+.+..... -.| ...+..+|..|.+.-...+..
T Consensus 303 vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~---~~gLL~~----~~~lls~~~-~~~-~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 303 TLLLSGLYGLAIDYTYTFSEMDAVHLAIGLA---SLKLFKI----DSSTRLTKK-PKR-DIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp HHHHTTCHHHHHHHHHTTCHHHHHHHHHHHH---HTTC-----------------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHhhHHHHHHHHHhcCchhHHHHHHHHH---HcCCccC----CCcccccCC-Ccc-cccHHHHHHHHHHHhhcCCHH
Confidence 4556788888888887663223333332222 2333222 111111100 011 344667777777666677788
Q ss_pred hHHHHHHHHhhccCCchHHH-HHHHHHHHhhcCCHHHHH-----------HHHHHc---ccc-h-HhhHHHH----HHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFM-GTALIDLYGKVGCLERAI-----------RVFKSM---VIK-D-VCTWNAM----ISSL 142 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~-----------~~~~~~---~~~-~-~~~~~~l----~~~~ 142 (311)
.|.+.|-.+.-.+-+..... ...+-..-...++++.-+ .++++- +.. | ......+ ..-+
T Consensus 374 ~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~a 453 (661)
T 2qx5_A 374 VAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRA 453 (661)
T ss_dssp HHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 88888776632210111112 122222223333332211 112211 111 1 1112222 2234
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHH-cc---------------ccHHHHHHHHHHhhccC----CC-
Q 040965 143 ASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACA-RA---------------QLVELGLELFHSMLGKF----EV- 199 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~-~~---------------~~~~~a~~~~~~~~~~~----~~- 199 (311)
-..|++++|+.+|.-..+ +| ....+.++.-.. .. +-...|.++.+...... .+
T Consensus 454 e~~G~~~dAi~LY~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 454 DEDGRIYDSILLYQLAEE----YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHTTCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 456777777777765432 12 122333332211 11 12335555555443220 11
Q ss_pred ccchhhHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCCc
Q 040965 200 VPIMEHYGCVVDL-----LGRAGLLSEAKEFMRSMPFEPDA 235 (311)
Q Consensus 200 ~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p~~ 235 (311)
..+..|+..|.+. +...|+++.|++.++++++-|..
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 2244566655543 36789999999999999776743
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=57.90 E-value=15 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHh
Q 040965 10 DMDSAILLFENMLKRDVVSWTSIINGFVRNGCFG 43 (311)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 43 (311)
+.++|.++++.++.+...+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3444555555554444455555555544444433
No 304
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.15 E-value=23 Score=22.13 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHH
Q 040965 115 GCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 115 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
.+.++|.++++.+..+.+.+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 457777778877777777778888887776666555543
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=53.46 E-value=57 Score=23.66 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhccc-cH-------HHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 040965 11 MDSAILLFENMLKR-DV-------VSWTSIINGFVRNGCFGEAICVFKNMMGNV 56 (311)
Q Consensus 11 ~~~A~~~~~~~~~~-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 56 (311)
++.|+.+|+.+.+- |. ..--..+..|.+.|.+++|.++|++.....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 46788888877332 21 123345677999999999999999976644
No 306
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.46 E-value=57 Score=23.11 Aligned_cols=145 Identities=11% Similarity=0.013 Sum_probs=82.7
Q ss_pred hhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
..+++.|.-+....+.+.+..++...-...+.++.+.|..+. ...+..+.. .|+...-...+.+....+ .
T Consensus 36 ~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~-----d~~~~vr~~a~~aL~~~~----~ 105 (201)
T 3ltj_A 36 YALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK-----DEDGWVRQSAAVALGQIG----D 105 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT-----CSSHHHHHHHHHHHHHHC----C
T ss_pred HHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc-----CCCHHHHHHHHHHHHHhC----c
Confidence 344555554445555555556677766677777777776544 444445543 345554444554444433 2
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..+...+..+.. .++..+-...+.++.+.++.+....+..-+..++..+-...+.++...|+ .++...+..+.+.
T Consensus 106 ~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d 180 (201)
T 3ltj_A 106 ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET 180 (201)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC
Confidence 345555555553 34556666677777777765444444444455666666667777777666 4455566655543
No 307
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=53.20 E-value=18 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
.++|...|..|+...++.|+. +|...+...
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i 45 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKI 45 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHH
Confidence 466677777777766666654 565555443
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.01 E-value=85 Score=24.98 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccch---HhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKD---VCTWNAMISSLASN-SREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
..++.-|...|+.++|...++++..|. ..+...+..++-+. ...+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 457777888889999999998886663 22333333333322 23455666777777666554433322222222222
Q ss_pred c----cHHHHHHHHHHhhccC---CCcc--c---------------hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 181 Q----LVELGLELFHSMLGKF---EVVP--I---------------MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 181 ~----~~~~a~~~~~~~~~~~---~~~~--~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
. +...|...+..+.... |.-| + ......++..+.+....+.+.+++.+.
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHc
Confidence 2 3445555555443221 2222 1 011233445566667777788887776
No 309
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.81 E-value=19 Score=20.14 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHH-hccchhHHHHHHHHHHHHccCCCCC
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNIH-AGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
.+-++.+.++.|+-. . ..+-.++ ...|+.+.|...+-+|...+..|+.
T Consensus 10 ee~l~~L~emFP~ld-~-~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-Q-EVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-H-HHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-H-HHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344444555567632 1 1222222 3567788888888888777766654
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=51.04 E-value=38 Score=23.01 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+.+.|..++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 455565554332 23344444455566677777777554 3334444444455566665543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.34 E-value=57 Score=22.28 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=16.9
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
.+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 333334444555555555433 22233333333344444444
No 312
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=50.33 E-value=93 Score=24.62 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=37.4
Q ss_pred HhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 227 RSMPFEPDA--SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 227 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..-+..|.. -+...-+....+.+++..|..+-+++++.+|+.. ..++|.+++....+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~ 255 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADS 255 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhc
Confidence 333445533 3345555667889999999999999999888532 34556666665554
No 313
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.30 E-value=58 Score=24.37 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=97.3
Q ss_pred cCcchhHHHHHHHHhhccCCchHH---HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVF---MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+..+++.-..+ +....+.+. ..+..|+.+
T Consensus 15 ~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~--- 86 (285)
T 1wdy_A 15 NEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-LAAIAGSVK--- 86 (285)
T ss_dssp TTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH---
T ss_pred cCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCCHH---
Confidence 45565554444 444333321 1123556667788887777777654332 222233333 333446544
Q ss_pred HHHHHHHHcCCCCcH---HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchh-------------hHHHHHHHHHhc
Q 040965 153 VMFDEMKEKGLRANE---ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME-------------HYGCVVDLLGRA 216 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~ 216 (311)
+++.+.+.|..++. ..++.+ ...+..|+.+-...+++. +..++.. ..+ .+...+..
T Consensus 87 -~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~ 158 (285)
T 1wdy_A 87 -LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGAT-ALMDAAEK 158 (285)
T ss_dssp -HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHH
T ss_pred -HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCc-HHHHHHHc
Confidence 44555556655542 222233 334456666554444433 3333211 112 33444567
Q ss_pred CCHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCC--C--chhHHHHHHHHHhccchhHHHH
Q 040965 217 GLLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGAVDLCHEVGRRLLELQP--K--HCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 217 g~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
|+.+-+..+++..+..++. ...+.+.. ....++......+++.+.+.+. + +..-. ..+....+.|+.+-
T Consensus 159 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~-- 234 (285)
T 1wdy_A 159 GHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHLGL-- 234 (285)
T ss_dssp TCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHHHTTCHHH--
T ss_pred CCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHHHcCCHHH--
Confidence 8888888888875444433 23333433 3456665555566666665332 2 22222 33334445566544
Q ss_pred HHHHHHHH-ccCCC
Q 040965 290 DLRKAMVE-AGIRK 302 (311)
Q Consensus 290 ~~~~~m~~-~~~~~ 302 (311)
.+.+.+ .|..+
T Consensus 235 --v~~Ll~~~g~~~ 246 (285)
T 1wdy_A 235 --VQRLLEQEHIEI 246 (285)
T ss_dssp --HHHHHHSSSCCT
T ss_pred --HHHHHhccCCCc
Confidence 344444 45443
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.83 E-value=37 Score=23.95 Aligned_cols=19 Identities=0% Similarity=-0.101 Sum_probs=11.8
Q ss_pred HHHhhcCCHHHHHHHHHHc
Q 040965 109 DLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~ 127 (311)
...+..|+.+....++..-
T Consensus 10 ~~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCT
T ss_pred HHHHHhccHHHHHHHHHcC
Confidence 3345667777777776543
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.28 E-value=43 Score=23.33 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=17.4
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
.+.|..++.. -..++..+...+..-.|.++++.+.+
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 3445554332 23344444455555556666665543
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=47.51 E-value=77 Score=22.87 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=10.4
Q ss_pred HHHHhhcCCHHHHHHHHHH
Q 040965 108 IDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~ 126 (311)
+...+..|+.+-+..+++.
T Consensus 44 L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 44 LHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3444556666655555543
No 317
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.93 E-value=91 Score=23.53 Aligned_cols=222 Identities=9% Similarity=-0.116 Sum_probs=90.4
Q ss_pred ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc-CcchhHHHHHHHHhhccCCch
Q 040965 22 LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE-GGLYLGKQVHGYILRNEIVLS 100 (311)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 100 (311)
..+|...-...+.++.+.|.. .+...+..+.. .|+...-...+.+....+.. ........++...... .++
T Consensus 33 ~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~ 104 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRGGQ-DAVRLAIEFCS-----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKS 104 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSC
T ss_pred HcCCHHHHHHHHHHHHccCCc-hHHHHHHHHHc-----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCC
Confidence 334555555556666666643 34455555543 23433333333333333211 1122222233221111 234
Q ss_pred HHHHHHHHHHHhhcCC-----HHHHHHHHHHc-ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGC-----LERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~-----~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
..+....+.++...+. ...+...+..+ ..++..+-...+.++...|+.+ +...+..+.+ .++...-...+
T Consensus 105 ~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4444444455444431 23344433333 4455555555566666665532 3344444433 23444444444
Q ss_pred HHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhH
Q 040965 175 TACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 175 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
.++...+ ....+...+..+.+ .++..+-...+.++.+.|+....-.+.+.+. .|+. -...+.++...|+ ..
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~v--r~~a~~aL~~i~~-~~ 252 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNTV--YDDIIEAAGELGD-KT 252 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSSC--CHHHHHHHHHHCC-GG
T ss_pred HHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-CccH--HHHHHHHHHhcCc-hh
Confidence 4444433 12344444444443 2333344444555555554433333333332 2331 2233444444444 23
Q ss_pred HHHHHHHHHh
Q 040965 254 CHEVGRRLLE 263 (311)
Q Consensus 254 a~~~~~~~~~ 263 (311)
+...+.++.+
T Consensus 253 ~~~~L~~~l~ 262 (280)
T 1oyz_A 253 LLPVLDTMLY 262 (280)
T ss_dssp GHHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 4444444443
No 318
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=46.31 E-value=24 Score=20.62 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
..++|...|.+|++..++.|+. +|...+....
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~ 44 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMII 44 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 3466666666666665655554 5555555433
No 319
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.29 E-value=13 Score=20.91 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=18.6
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCch
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNE 63 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~ 63 (311)
.-+++.|...|.++...|. ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~-IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGE-IPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTC-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCC-CCHHH
Confidence 4588999999999987663 66654
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=42.94 E-value=56 Score=20.05 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=9.4
Q ss_pred cCCHhHHHHHHHHhhcC
Q 040965 39 NGCFGEAICVFKNMMGN 55 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~ 55 (311)
....++|.++++.+.++
T Consensus 49 ~t~~~kar~Lld~l~~k 65 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKK 65 (94)
T ss_dssp SSHHHHHHHHHHHHTTS
T ss_pred CChHHHHHHHHHHHHHc
Confidence 45555666666655443
No 321
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=42.43 E-value=40 Score=18.19 Aligned_cols=39 Identities=13% Similarity=-0.102 Sum_probs=24.0
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (311)
..+.+.+|...|+.....-.+.|+. .+.|++..|+++++
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHhh
Confidence 3455666777777654444444544 36778888777654
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.21 E-value=69 Score=23.17 Aligned_cols=178 Identities=6% Similarity=-0.070 Sum_probs=80.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccch----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHc
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIKD----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE---ITFVAVLTACAR 179 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~ 179 (311)
.+...+..|+.+-+..+++.-...+ ....+. +...+..|+.+ +++.+.+.|..++. ...+. +...+.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~ 118 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSC-IHLAAQ 118 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 4566677788877777776543221 112222 23334446644 34444455554432 12222 333445
Q ss_pred cccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcch---HHHHHHHHHhcCChhH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV---LGALLGACKIHGAVDL 253 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~ 253 (311)
.|+.+-+..+++. +..++ ....+.+..+. ..+......+++.+.+..++... -...+...+..|+.+-
T Consensus 119 ~~~~~~~~~Ll~~-----~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 192 (240)
T 3eu9_A 119 FGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWAA-YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192 (240)
T ss_dssp TTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHH-HHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhc-----CCCccccCCCCCcHHHHHH-HhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHH
Confidence 5666654444432 33332 22223343333 34444455566666543433221 1223444556778776
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..+++.-......+..-. ..+....+.|+.+-+.-+++...+
T Consensus 193 v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 193 ISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 6666665322221121111 223333555666555555444333
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.62 E-value=1.3e+02 Score=23.76 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDV-CTWNAMISSLASNSREKEALVMFDEMKEKGLR 164 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 164 (311)
+...+..|+.+-+.-+++.-...+. ..++ .+...+..|+.+-+..+++.....|..
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 3444455665555555544322221 1122 222233456666555555554443433
No 324
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=41.57 E-value=1.7e+02 Score=25.10 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=18.0
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
|++......|-.-|.+.|++-+|.+++..+-..
T Consensus 214 ~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 214 GSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp C---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred ccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 444444555555666666666666666666554
No 325
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.15 E-value=1.4e+02 Score=24.14 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc----------C
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-------P-FEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL----------Q 265 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~ 265 (311)
.-|+.+...+.+.+++.+|++.+.+. + .+-|...|.-++...- +-.-.++++.... -
T Consensus 297 YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn-----eliP~~~k~a~~~~~~~G~~~~si 371 (472)
T 3re2_A 297 YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAN-----DLIPNILKDAVAKADPSGTGSTNL 371 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH-----THHHHHHHHHHTCC--------CG
T ss_pred cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH-----HHhhHHHHhhhhccCCCCcchhhh
Confidence 34677788889999999999888766 1 1235566655553311 1111233322221 2
Q ss_pred CCchhHHHHHHHHHhccchhHH
Q 040965 266 PKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..++.+|..|++.|-...+|++
T Consensus 372 L~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 372 TSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhcceeccc
Confidence 3356788888888877777766
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.00 E-value=62 Score=23.52 Aligned_cols=176 Identities=13% Similarity=0.017 Sum_probs=80.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCc---HHHHHHHHHHHHc
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRAN---EITFVAVLTACAR 179 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~---~~~~~~l~~~~~~ 179 (311)
.+...+..|+.+-+..+++.-..+ +....+. +...+..|+.+-+. .+.+.| ..++ ..-.+. +...+.
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~g~t~-L~~A~~ 120 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGHYEVVQ----YLLSNGQMDVNCQDDGGWTP-MIWATE 120 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTCHHHHH----HHHTTTCCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHH----HHHhCCCCCcccCCCCCCCH-HHHHHH
Confidence 445556677777666666543221 2222222 22334456654433 334443 2221 111222 223344
Q ss_pred cccHHHHHHHHHHhhccCCCccch---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChhH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIM---EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGAVDL 253 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~ 253 (311)
.|+.+-...+++ . |..++. ...+. +...+..|+.+-+.-+++. +..++. ...+ .+......|+.+-
T Consensus 121 ~~~~~~~~~Ll~----~-g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t-~L~~A~~~~~~~~ 192 (237)
T 3b7b_A 121 YKHVDLVKLLLS----K-GSDINIRDNEENIC-LHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDS-PLHIAARENRYDC 192 (237)
T ss_dssp TTCHHHHHHHHH----T-TCCTTCCCTTSCCH-HHHHHHHCCHHHHHHHHTT-TCCTTCCCTTCCC-HHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHH----C-CCCCCccCCCCCCH-HHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCC-HHHHHHHhCCHhH
Confidence 566654444433 2 333322 11222 3333456777655555544 333322 1222 2334456677766
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..+++.-......+.. -.+-+......|+...+.++.+.+.+
T Consensus 193 v~~Ll~~gad~~~~d~~-g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 193 VVLFLSRDSDVTLKNKE-GETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHTTTCCTTCCCTT-SCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccCCC-CCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65555442222211211 11333445677888888888888765
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.83 E-value=34 Score=23.03 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
++..+...+++-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444455556666666665554445555444455555444
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.84 E-value=39 Score=22.43 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444555566677777777666555555555555555655553
No 329
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=39.66 E-value=53 Score=18.80 Aligned_cols=51 Identities=16% Similarity=-0.023 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
+.++.++..++...-++.++..+.++.+.+.-+...|..-.+.+++..-+.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677777777778899999999999888777778888777777654433
No 330
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.23 E-value=1e+02 Score=26.14 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
|.+.......++.|..+|.++ .+.| +...|+.|.-.....|+.-.|.-.|-+.+-...+.+.+...|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 344444455566676666666 3334 33566666655555666666665555555444444445555555544
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.08 E-value=2.4e+02 Score=26.27 Aligned_cols=109 Identities=9% Similarity=-0.063 Sum_probs=67.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--------------------CC-
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGL--------------------RA- 165 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--------------------~~- 165 (311)
++..+...|..+-|.++..-+. .++..--.+..+|...|++++|...|++.- .|+ .+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccccc
Confidence 4555666677766655443333 333333456677777788888888776532 111 11
Q ss_pred --cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCC-ccc--hhhHHHHHHHHHhcC
Q 040965 166 --NEITFVAVLTACARAQLVELGLELFHSMLGKFEV-VPI--MEHYGCVVDLLGRAG 217 (311)
Q Consensus 166 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g 217 (311)
...-|..++..+-+.+.++.+.++-+.+++.-.. +++ ...|..+..+.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 2346788888899999999999888887753211 121 235677777776655
No 332
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=38.63 E-value=62 Score=19.29 Aligned_cols=37 Identities=5% Similarity=0.122 Sum_probs=18.7
Q ss_pred HHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 224 EFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 224 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+++.++ ++.|++.||+-+...+.+.--..+++.+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345555 5566666666665544333333444444443
No 333
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.27 E-value=1.5e+02 Score=24.16 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=26.4
Q ss_pred hhhhhcCChHHHHHHHHHhccccHH--HHHHHHHHHHhcCCHhHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLKRDVV--SWTSIINGFVRNGCFGEAICVFKN 51 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 51 (311)
...++.|+++-+..+++.-..++.. ...+.+...+..|+.+-+..+++.
T Consensus 19 ~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 3456778888777777754333211 111233344566777666555543
No 334
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=37.18 E-value=2.6e+02 Score=25.97 Aligned_cols=24 Identities=21% Similarity=-0.006 Sum_probs=11.4
Q ss_pred HHHHHHHccccHHHHHHHHHHhhc
Q 040965 172 AVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
.++.+++-..+.+...++++..+.
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhC
Confidence 344444444455555555554443
No 335
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.76 E-value=1.2e+02 Score=21.97 Aligned_cols=16 Identities=0% Similarity=0.040 Sum_probs=8.5
Q ss_pred HHhcCChhHHHHHHHH
Q 040965 245 CKIHGAVDLCHEVGRR 260 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~ 260 (311)
.+..|+.+-+..+++.
T Consensus 157 A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3455666555555544
No 336
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.36 E-value=54 Score=23.76 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCccchh----hHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 183 VELGLELFHSMLGKFEVVPIME----HYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++.|+.+|+.+.+... .+... .-...+..|.+.|.+++|.++|++.
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 5667777777655421 11110 1122334577778888888888774
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.20 E-value=1.1e+02 Score=21.35 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHH-H-----HHccccHHHHHHHHHHhhc
Q 040965 144 SNSREKEALVMFDEMKEKGLRA--NEITFVAVLT-A-----CARAQLVELGLELFHSMLG 195 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 195 (311)
..|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777877777766554344 4455566665 2 3456888888888877765
No 338
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.78 E-value=1.1e+02 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=8.2
Q ss_pred HHHhhcCCHHHHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFK 125 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~ 125 (311)
...++.|+.+.+..+++
T Consensus 14 ~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555555544444
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.44 E-value=52 Score=21.95 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 040965 158 MKEKGLRANEITFVAVLTACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (311)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCc
Confidence 334444444322 22333333333 444555555555443 233333333333444444443
No 340
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=34.01 E-value=90 Score=24.74 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
+.+.|+.|...++.-++..+.+.=.++.+..+|+.+..
T Consensus 219 L~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 219 FKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 33444555444444444444444445555555555543
No 341
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.91 E-value=2e+02 Score=23.79 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=37.4
Q ss_pred HHHHHHHhcc--------ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc---CCCCCCCchHHHHHHHH
Q 040965 14 AILLFENMLK--------RDVVSWTSIINGFVRNGCFGEAICVFKNMMG---NVNLVRPNEATYVSVLS 71 (311)
Q Consensus 14 A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~p~~~~~~~ll~ 71 (311)
+..+|++.+. .....|.-+...+.+.+++.+|++.+.+.-. .-.-.+-|...|.-++.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~e 351 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 351 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHH
Confidence 4556666532 2466788889999999999999999988632 10002345555555554
No 342
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.72 E-value=1.5e+02 Score=22.39 Aligned_cols=235 Identities=7% Similarity=-0.009 Sum_probs=112.1
Q ss_pred hhcCChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhhhcCcc
Q 040965 6 VKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~ 82 (311)
.+..+.++..+++..- ..+|..-++ .+...+..|+.+-+..+++. | ..++.. ..+.+..++ . .|+.
T Consensus 7 i~~~~~~~v~~lL~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----g--~~~~~~~g~t~L~~A~-~---~g~~ 75 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKDTFKADVHGHS-ASYYAIADNNVRLVCTLLNA----G--ALKNLLENEFPLHQAA-T---LEDT 75 (285)
T ss_dssp GGGCCHHHHHHHHHSTTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT----T--GGGSCCTTCCHHHHHT-T---SSSC
T ss_pred HHhcCHHHHHHHHHhCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC----C--CCCCCCCCCCHHHHHH-H---cCCH
Confidence 3456666777776543 112222222 23344567887766655554 3 222221 122333322 2 4445
Q ss_pred hhHHHHHHHHhhccCCchHH--HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVF--MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
+-+..++ +.|..++.. .-.+.+...+..|+.+-+.-+++.-..+ +...+.+.+...+..|+.+-+ +.
T Consensus 76 ~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~ 147 (285)
T 3kea_A 76 KIVKILL----FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SY 147 (285)
T ss_dssp HHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HH
T ss_pred HHHHHHH----HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HH
Confidence 5444444 445443321 1123445556778888777777764333 222323344445566776544 44
Q ss_pred HHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc
Q 040965 158 MKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236 (311)
Q Consensus 158 m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 236 (311)
+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..- +. .+..-.+..+...+..|+.+-+.-++ +.|..++..
T Consensus 148 Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll-~~gad~~~~ 224 (285)
T 3kea_A 148 FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST-NT-NNSLLFIPDIKLAIDNKDIEMLQALF-KYDINIYSA 224 (285)
T ss_dssp HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CT-TCCCBCCTTHHHHHHHTCHHHHHHHT-TSCBCSTTT
T ss_pred HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCC-Cc-ccCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCCC
Confidence 44444333 2112233344455678877766666543221 11 11111222233334566665544444 445556554
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
... -...|+.+-+.-+++.-.+...+
T Consensus 225 ~~~-----a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 225 NLE-----NVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp TGG-----GGTTTCHHHHHHHHHHHHHHTTC
T ss_pred Chh-----hhhcCCHHHHHHHHHcCCCCCCc
Confidence 421 13467777777777766654433
No 343
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.42 E-value=1.4e+02 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHccccHHHHHHHHHHhhc
Q 040965 175 TACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~ 195 (311)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 356667777777777777654
No 344
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.93 E-value=88 Score=22.13 Aligned_cols=57 Identities=16% Similarity=-0.018 Sum_probs=43.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
.|..+.++.++..++.-.-++.++..+.++...+..+...|..-++.+++..-+..|
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355566788888888888888999999999888777777888888887776554443
No 345
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.53 E-value=1.3e+02 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
...++.-|...|+.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45688889999999999999999853
No 346
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.11 E-value=1.2e+02 Score=20.41 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
+.+.|..++..- ..++..+...+ .-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCC
Confidence 444555554332 22333333444 45666666666544 33334434333344444444
No 347
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.02 E-value=72 Score=23.66 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=10.1
Q ss_pred HHHHhcCChhHHHHHHH
Q 040965 243 GACKIHGAVDLCHEVGR 259 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~ 259 (311)
...+..|+.+-+..+++
T Consensus 145 ~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 145 SLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33455677666666665
No 348
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.99 E-value=2.1e+02 Score=24.35 Aligned_cols=72 Identities=10% Similarity=-0.100 Sum_probs=50.2
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKI 247 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 247 (311)
.+...-....+.|..+|.++... .+-+...|+.|.-.....|+.-+|.-.|-+. -..|-..+...|...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 33344455678999999999853 2334578999988888788877777665554 445777777777776654
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.46 E-value=65 Score=21.83 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
++..+...+ +-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 334444444 56788888888877666676666666666666554
No 350
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.44 E-value=95 Score=21.86 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=22.8
Q ss_pred hhhcCChHHHHHHHHHhccc-c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 040965 5 YVKNGDMDSAILLFENMLKR-D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNV 56 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 56 (311)
.++.|+++....+++.-... + ..-+ +.+...+..|+.+.-.++.+.+++.|
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~G 65 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKG 65 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCC
Confidence 34556666655555443211 1 1111 23333344555544445555555555
No 351
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.39 E-value=1.4e+02 Score=20.82 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccch--HhhHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKD--VCTWNAMISSLASNSR--EKEALVMFDEMK 159 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~m~ 159 (311)
..++.-|...|+.++|...++++..|+ ......++..-...++ .+.+-.++..+.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457788888899999999999987663 2222333333333332 234456666653
No 352
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.31 E-value=1.7e+02 Score=21.90 Aligned_cols=180 Identities=11% Similarity=-0.030 Sum_probs=84.8
Q ss_pred ccccHHHHHHHHHHHHhcCCHh----HHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC--cchhHHHHHHHHhhc
Q 040965 22 LKRDVVSWTSIINGFVRNGCFG----EAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG--GLYLGKQVHGYILRN 95 (311)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~~~~a~~~~~~~~~~ 95 (311)
..++...-...+.++.+.|... ..+.++..+.. -.++...-...+.+....+... ....+...+.....
T Consensus 64 ~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~----~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~- 138 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL----NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF- 138 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-
T ss_pred cCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-
Confidence 4445555555566666666322 23334432211 1245444444444444443110 02234444444433
Q ss_pred cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNS-REKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
.++..+-...+.++...|+.+..-.+..-+..++...-...+.++...+ +...+...+..+.+ .++...-...+
T Consensus 139 --d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~ 213 (280)
T 1oyz_A 139 --DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAI 213 (280)
T ss_dssp --CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 3455666666777777776432233333344555555555555555544 23445555555443 34666666677
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (311)
.++.+.|+... ...+....+. ++ .....+.++.+.|.
T Consensus 214 ~aL~~~~~~~~-~~~L~~~l~d----~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 214 IGLSYRKDKRV-LSVLCDELKK----NT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHTTCGGG-HHHHHHHHTS----SS--CCHHHHHHHHHHCC
T ss_pred HHHHHhCCHhh-HHHHHHHhcC----cc--HHHHHHHHHHhcCc
Confidence 77777775544 3444444432 22 22333555555555
No 353
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.14 E-value=91 Score=21.23 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 158 MKEKGLRANEITFVAVLTACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+.+.|..++..- ..++..+...+ ..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 445555554332 23333444444 455666666666544 3333444444445555555543
No 354
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.68 E-value=92 Score=23.15 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCC-----CC-----CcchHHHHHHHHHhcC---------ChhHHHHHHHHHHhcCCC--chhHHHHHHH
Q 040965 219 LSEAKEFMRSMPF-----EP-----DASVLGALLGACKIHG---------AVDLCHEVGRRLLELQPK--HCGRYVVLSN 277 (311)
Q Consensus 219 ~~~A~~~~~~~~~-----~p-----~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (311)
.+.|..++..||. -| ...-|..+..+|.+.| +.+.-..+++-.++.+.. -+..|..+++
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 5788888888842 22 3355778888888877 566777777777764422 3457888887
Q ss_pred HHhccchhHHHHHHHHHHHH
Q 040965 278 IHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~ 297 (311)
--...-+.++..+++..+.+
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 77777788888888887765
No 355
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=29.03 E-value=2.3e+02 Score=22.97 Aligned_cols=68 Identities=6% Similarity=-0.019 Sum_probs=50.2
Q ss_pred CcchHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 234 DASVLGALLGACKIHGA--VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+..+|-.++.......+ .+++..+++.+..-..++.+.=..|+....+-...+|-..+.+-|++.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 44678888887766554 478889999998877666666666676777777788888888888887644
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=28.93 E-value=1.1e+02 Score=22.95 Aligned_cols=19 Identities=5% Similarity=-0.284 Sum_probs=9.7
Q ss_pred HHHHhhcCCHHHHHHHHHH
Q 040965 108 IDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~ 126 (311)
+...++.|+.+.+..+++.
T Consensus 17 L~~A~~~g~~~~v~~Ll~~ 35 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPF 35 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 3334555666555555543
No 357
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.93 E-value=1.1e+02 Score=19.06 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNM 52 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 52 (311)
+..+.-....+.+.|+|++|++.....
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345667788899999999987766554
No 358
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=28.41 E-value=2.6e+02 Score=23.25 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHH-------------
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-------P-FEPDASVLGALLGACKIHGAVDLCHEVGRRLL------------- 262 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------- 262 (311)
.-|+.+...+.+.+++.+|++.+-+. + .+-|..+|.-++...- .-+. .+++...
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn--eliP---~~~k~~a~~~~~G~~~~~~~ 393 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAN--DVIP---NLLKEAASLLEAGEERPGEQ 393 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH--THHH---HHHHHHHHHHHTC-------
T ss_pred cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH--Hhhh---HHHHHhhhhccccccccccc
Confidence 34677888889999999999888665 1 2345566666554311 0011 1111111
Q ss_pred -------hcCCCchhHHHHHHHHHhccchhHH
Q 040965 263 -------ELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 263 -------~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..-..++.+|..|++.|-...+|++
T Consensus 394 ~~~~~~~~siL~Dp~cfA~LLrFYDgIC~WEE 425 (550)
T 3u84_A 394 SQGTQSQGSALQDPECFAHLLRFYDGICKWEE 425 (550)
T ss_dssp --------CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHhcChHHHHHHHHHhhcceeccc
Confidence 1123466789999998887777776
No 359
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.02 E-value=2.4e+02 Score=22.74 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccch--HhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKD--VCTWNAMISSLASNSR--EKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
..++.-|...++.++|...++++..|. ......++..-...++ .+.+-.++..+.. ++-+.......+..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 457777888899999999998886553 2233333333332222 2334455555542 44444443333333
No 360
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.97 E-value=79 Score=17.24 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC--HHHHHHHHHHcccch
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC--LERAIRVFKSMVIKD 131 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 131 (311)
.-.+.++.+++.|+++.. ...+..+.|+ ++.|.+.+.+|.-|+
T Consensus 8 vn~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CCHHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred hHHHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 334556777777777642 2334455565 888888888875543
No 361
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.84 E-value=1.1e+02 Score=21.27 Aligned_cols=14 Identities=0% Similarity=-0.083 Sum_probs=7.9
Q ss_pred HhcCCHhHHHHHHH
Q 040965 37 VRNGCFGEAICVFK 50 (311)
Q Consensus 37 ~~~g~~~~A~~~~~ 50 (311)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 45566666555554
No 362
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.52 E-value=1.6e+02 Score=21.10 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=51.1
Q ss_pred HHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHccccH
Q 040965 110 LYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE---ITFVAVLTACARAQLV 183 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~ 183 (311)
..++.|+++....+++.-... +....+ .+...+..|+.+-+..+ .+.|..++. ..-.+.+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 345677777776666653222 222222 33444566776544444 444433321 1011233344456666
Q ss_pred HHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040965 184 ELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEFMRS 228 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (311)
+-+..+++ . |..++ ....+. +...+..|+.+-+..+++.
T Consensus 90 ~~v~~Ll~----~-g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 90 SMVVQLMK----Y-GADPSLIDGEGCSC-IHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHHHH----T-TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHH----c-CCCCcccCCCCCCH-HHHHHHcCHHHHHHHHHhc
Confidence 65544443 2 33333 222233 3344566787766666665
No 363
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.41 E-value=3e+02 Score=23.84 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCChhHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE--PDASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a 254 (311)
.+.+.....+..++.+..+.. ..-...++..|.+.|-.+.|.++++.++.+ -+...+ .-+..|.++|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~T-ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVT-NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred cchhHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 344455555566665433332 234555666777777777777777766322 233344 233345666666543
No 364
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.20 E-value=1.1e+02 Score=18.65 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHH
Q 040965 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 150 (311)
....++|..+++.+..+...+|..++.++...+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4566777777777777777777777777766665433
No 365
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.77 E-value=1.7e+02 Score=20.63 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhCCCCC
Q 040965 206 YGCVVDLLGRAG-LLSEAKEFMRSMPFEP 233 (311)
Q Consensus 206 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~p 233 (311)
..-++..+.+.| .++.+..+++.+...|
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCcCCC
Confidence 344455555555 4555555555553333
No 366
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.71 E-value=1.2e+02 Score=19.01 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc-HH-HHHHHHHHhhccCCCccchhhHHHH
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQL-VE-LGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
|.++.+++..-|+.|+..+...++..|..-+- .+ -+.+++---....|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 56667777777888888888888777665553 11 1222222212233667766555443
No 367
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.38 E-value=1.7e+02 Score=20.42 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC--chHHHHHHHH-Hhhhhh--hcCcchhHHHHHHHHhh
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP--NEATYVSVLS-SCAGLV--NEGGLYLGKQVHGYILR 94 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p--~~~~~~~ll~-~~~~~~--~~~~~~~a~~~~~~~~~ 94 (311)
.|..-+..| ..|++=+|.++++..=... ..| +...|..||. ....+. +.|+...|..++.+...
T Consensus 35 ~~~~~i~lF-n~g~yfeaHEvLEe~W~~~--~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLY-NSGEFHESHDCFEDEWYNY--GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTT--CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444444 4599999999999987654 345 5667777777 433221 26777778877777655
No 368
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.34 E-value=1.5e+02 Score=20.04 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=18.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCC
Q 040965 210 VDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGA 250 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~ 250 (311)
+..+...+..-.|.++++.+ +...+..|....+..+...|-
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33444444444555555544 112333444444445555553
No 369
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.27 E-value=1.6e+02 Score=20.30 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC-C----CCCcchHHHHHHHHHhcCChhH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-F----EPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
.+.+.+-+.+.++..|.+++. --..+++.+...+..-.|.++++.+. . ..+..|...-+..+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345555555555554777654 33445566666666667777777661 1 2234455555566667766654
No 370
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.65 E-value=2.7e+02 Score=22.56 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=23.9
Q ss_pred hhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKN 51 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 51 (311)
...++.|+.+-+..+++.-... +..-+ +.+...+..|+.+-+.-+++.
T Consensus 52 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 52 HMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhC
Confidence 3445677777777776654222 11111 223334566766555444443
No 371
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=25.60 E-value=1.9e+02 Score=25.59 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 220 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
+.|.++.+.|| .........+.....|++.-|.++.+.+...+|++..+-..++++|.+.|.-
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555553 1112222334456889999999999999999999988888888888877643
No 372
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.50 E-value=2.9e+02 Score=22.59 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=20.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
+..--..++.+++...+.....++++......
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 33445566777777777777777777666544
No 373
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.48 E-value=1.7e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC
Q 040965 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115 (311)
Q Consensus 65 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 115 (311)
.+--+++++....+..+.+.|+-++.+|++.|..|.-..-..++.+.-..|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 333455555455445667777777778877776655444443344433333
No 374
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.40 E-value=1.2e+02 Score=21.65 Aligned_cols=193 Identities=9% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc-hHHHHHHHHHHH
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLY 111 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 111 (311)
+...++.|+.+.+..+++.-.... ...|....+.+..++. .|+.+-+..+++.-....+.. ....-.+.+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVS----FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHH----TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCcccc--ccCCCCCCCHHHHHHH----cCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Q ss_pred hhcCCHHHHHHHHHHc--ccchHhhHH--HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 112 GKVGCLERAIRVFKSM--VIKDVCTWN--AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 112 ~~~g~~~~A~~~~~~~--~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
+..|+.+-+..+++.- ...+..... +.+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+.
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHH
Q ss_pred HHHHHh-hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcc
Q 040965 188 ELFHSM-LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236 (311)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 236 (311)
-+++.- . .+......-...+...+..|+.+-+.-++++.|..++..
T Consensus 158 ~Ll~~g~~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~ 204 (228)
T 2dzn_A 158 LLCGLGKS---AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204 (228)
T ss_dssp HHHTTTCC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred HHHhcCcc---cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc
No 375
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.79 E-value=1.6e+02 Score=19.32 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCChh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVD 252 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 252 (311)
.+++.+...+..-.|.++++.+ +...+..|....+..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3445555555555666666666 21234445445555566666543
No 376
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.71 E-value=1.7e+02 Score=19.63 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=22.8
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCC
Q 040965 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIHGA 250 (311)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~ 250 (311)
|++++. .-..++..+...+..-.|.++++.+ +...+..|....+..+...|-
T Consensus 17 g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 17 GVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp TCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 555443 2223334444444444555555555 112233444444455555553
No 377
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.47 E-value=2.7e+02 Score=21.84 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=22.0
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++.|...++..++..+.+.=.++.+.++++.+
T Consensus 218 ~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 218 EIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp TCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 66666666666666666666677777777666
No 378
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.41 E-value=96 Score=20.28 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 250 AVDLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 250 ~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+++|.+.+..+++ ..-..+..|+..+..+...-.-.+-..+|..+.+.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcC
Confidence 45566666665554 22234456665555543211111124555566665554
No 379
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.24 E-value=2.9e+02 Score=22.21 Aligned_cols=123 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc----hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN----EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
..++.-|...|+.++|.+.++++ -.|+ ...+..+..+.-+.... .+.+..++..+...++-+......
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL------~~p~~~~~~~v~~~i~~aLer~~~~--re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM------RAPKHFLPEMLSKVIILSLDRSDED--KEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH------TCCGGGHHHHHHHHHHHHHTSCHHH--HHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh------CCchhhHHHHHHHHHHHHHCCChHH--HHHHHHHHHHHHHCCCCCHHHHHH
Q ss_pred HHHHHHhhcCC--------HHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 106 ALIDLYGKVGC--------LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 106 ~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.+...+....+ +.-.-+++..++..+..+...+...+...+...-...++..+.+
T Consensus 88 Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 88 AFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 380
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.00 E-value=1.2e+02 Score=17.69 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=27.2
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 158 MKEKGLRANEITFVAVLTACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+. +...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 445565555433 33444444443 445556666666443 33333334444444444444
No 381
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.87 E-value=1.9e+02 Score=19.80 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
.+..+...+...|-+|....-+..+... .+......++..|..
T Consensus 9 ~~~~~~~~l~~~g~LD~~f~qL~~L~~~----~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 9 QWVDYIKSMFMEGFLDGQFLQLQQLQDE----NNPEFVFEVVSLFFD 51 (153)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHTCBT----TBTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHhhcC----CCHHHHHHHHHHHHH
Confidence 4666777788888888666666666432 234456777777653
No 382
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.65 E-value=96 Score=23.37 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCC-----CC-----CcchHHHHHHHHHhcC---------ChhHHHHHHHHHHhcCCC--chhHHHHHHH
Q 040965 219 LSEAKEFMRSMPF-----EP-----DASVLGALLGACKIHG---------AVDLCHEVGRRLLELQPK--HCGRYVVLSN 277 (311)
Q Consensus 219 ~~~A~~~~~~~~~-----~p-----~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (311)
.+.|..++..||. -| ...-|..+..+|.+.| +.+.-..+++-.++.+.+ -|..|..+++
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 5778888888831 22 3355777888888877 566777777777765432 3457888887
Q ss_pred HHhccchhHHHHHHHHHHHH
Q 040965 278 IHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~ 297 (311)
--...-+.++..+++..+.+
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 77777778888888877655
No 383
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.14 E-value=1.7e+02 Score=19.07 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=22.5
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
+|+.+....+.|+...-..-+..+...++++.|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445544443333333445566777777777666654
No 384
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.63 E-value=2.3e+02 Score=20.69 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=11.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCC
Q 040965 143 ASNSREKEALVMFDEMKEKGLR 164 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~ 164 (311)
+..|+.+.+..+++.+.+.|..
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 3445555555555555554443
No 385
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.44 E-value=2.2e+02 Score=20.03 Aligned_cols=110 Identities=6% Similarity=-0.017 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
.+.+..+++.+.+.|..-|..--..++....+.|.+ ....+-.++..+ |+.++. ....+..+......+.|..+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~K-GI~~~~--I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKK-GIDDNI--AEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTT-TCCHHH--HHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHc-CCCHHH--HHHHHHhCCchhHHHHHHHHHH
Confidence 456677888888888776665556666665544332 223444555555 776552 2221211111112344555444
Q ss_pred hC----CCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHH
Q 040965 228 SM----PFEPDASVLGALLGACKIHG-AVDLCHEVGRRL 261 (311)
Q Consensus 228 ~~----~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 261 (311)
+- .-.++.....-++..+...| .++.+..+++.+
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 32 11112223344555555555 345555555554
No 386
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.06 E-value=1.8e+02 Score=19.04 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHH
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLG 214 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 214 (311)
+...+..|+.+.+..+++. ....+ ..+..-.+. +.. +..|+.+-+..+++. |..++ ....+.|. ..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~-L~~-~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~-~A~ 76 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTA-LQV-MMFGSTAIALELLKQ-----GASPNVQDTSGTSPVH-DAA 76 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCH-HHH-SCTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHH-HHH
T ss_pred HHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcH-HHH-HHcCCHHHHHHHHHC-----CCCCCCcCCCCCCHHH-HHH
Confidence 3344566888877777766 21111 112222333 334 666777655554433 33332 22233333 334
Q ss_pred hcCCHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 215 RAGLLSEAKEFMRSMPFEP---DASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
..|+.+-+.-+++.- ..+ |....+.|. ..+..|+.+-+..+++.
T Consensus 77 ~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHG-ADVNVPDGTGALPIH-LAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HTTCHHHHHHHHHTT-CCSCCCCTTSCCHHH-HHHHHTCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHHcC-CCCCCcCCCCCcHHH-HHHHhChHHHHHHHHhc
Confidence 567776666555543 233 222333333 33456777666666655
No 387
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.63 E-value=2.4e+02 Score=23.58 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+.|...|.+.++...+..+++.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i 202 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNF 202 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Confidence 44555666666666666666555
No 388
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.58 E-value=79 Score=23.96 Aligned_cols=14 Identities=0% Similarity=-0.069 Sum_probs=5.6
Q ss_pred hhcCCHHHHHHHHH
Q 040965 112 GKVGCLERAIRVFK 125 (311)
Q Consensus 112 ~~~g~~~~A~~~~~ 125 (311)
+..|+.+-+..+++
T Consensus 119 ~~~g~~~~v~~Ll~ 132 (276)
T 4hbd_A 119 VSHANFPVVQQLLD 132 (276)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 34444444333333
No 389
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.56 E-value=5.1e+02 Score=24.00 Aligned_cols=24 Identities=4% Similarity=-0.063 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
-..++.+++...+.....++++..
T Consensus 761 k~~ll~aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 761 ADKLRSALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344556666666666666666555
No 390
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.43 E-value=2.8e+02 Score=27.09 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=17.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 115 (311)
.+++-.|.+++.++.+.. |+...|..++..+...|
T Consensus 1297 ~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1297 HGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 344555566665555442 34455555555544443
No 391
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=20.28 E-value=1.1e+02 Score=17.91 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHccCCCCCc
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 305 (311)
.++.--.+.| +..|.++.+.|.+.|+..++.
T Consensus 28 S~lQR~lrIG-YnRAArlid~lE~~GiVgp~~ 58 (73)
T 2ve8_A 28 SAVQRKLKIG-YNRAARMIEAMEMAGVVTPMN 58 (73)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSBCCCC
T ss_pred HHHHHHHccC-hHHHHHHHHHHHHCCcCCccc
Confidence 4555555665 678999999999999875553
No 392
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.17 E-value=68 Score=23.79 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=16.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCC
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNV 56 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~ 56 (311)
+...++.|+.+....+++.+.+.+
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Confidence 344567788888777777666655
No 393
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.06 E-value=3.3e+02 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhh
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMM 53 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~ 53 (311)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567778888888888888888874
Done!