BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040972
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
Length = 240
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 57/62 (91%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLFE SS
Sbjct: 1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1
Length = 265
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
MAREKI+I+KIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLF+ SSS
Sbjct: 1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60
Query: 61 SFITLWFHKSSH 72
S + + H
Sbjct: 61 SMKQILERRDLH 72
>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1
Length = 220
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 63/76 (82%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
MAREKI+I+KIDNITARQVTFSKRRRG+FKKA+ELSVLCDA+V +IIFSATGKLFE SSS
Sbjct: 1 MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60
Query: 61 SFITLWFHKSSHITSF 76
+ S H ++
Sbjct: 61 RMRDILGRYSLHASNI 76
>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica
GN=MADS47 PE=1 SV=2
Length = 246
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 60/70 (85%)
Query: 3 REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSF 62
RE+I IR+IDN+ ARQVTFSKRRRGLFKKAEELS+LCDAEVG+++FSATGKLF+ +S+S
Sbjct: 22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81
Query: 63 ITLWFHKSSH 72
+ +SH
Sbjct: 82 EQIIDRYNSH 91
>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica
GN=MADS27 PE=2 SV=2
Length = 240
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 55/62 (88%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI IR+IDN T+RQVTFSKRR G+FKKA+EL++LCDAEVG++IFS+TG+L+E SS+
Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q9SI38|ANR1_ARATH MADS-box transcription factor ANR1 OS=Arabidopsis thaliana
GN=ANR1 PE=1 SV=1
Length = 234
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI IR+IDN T+RQVTFSKRR GL KKA+ELS+LCDAEVGVIIFS+TGKL++ +S+
Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica
GN=MADS57 PE=2 SV=2
Length = 241
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI IR+IDN T+RQVTFSKRR GL KKA+ELS+LCDAEVG+++FS+TG+L+E SS+
Sbjct: 1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60
Query: 61 SFITL 65
+ T+
Sbjct: 61 NMKTV 65
>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana
GN=AGL16 PE=1 SV=1
Length = 240
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 54/62 (87%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI I++I+N T+RQVTFSKRR GL KKA+EL++LCDAEVGVIIFS+TG+L++ SSS
Sbjct: 1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1
Length = 237
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N T RQVTFSKRR GL KKA ELSVLCDAE+G+IIFS++GKLFE SS+
Sbjct: 1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica
GN=MADS23 PE=2 SV=1
Length = 159
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 54/62 (87%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++IDN T+RQVTFSKRR GLFKKA ELS+LCDAEVG+++FS+T +L++ +SS
Sbjct: 1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana
GN=AGL21 PE=1 SV=1
Length = 228
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI I++ID+ T+RQVTFSKRR+GL KKA+EL++LCDAEVG+IIFS+TGKL++ +SS
Sbjct: 1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica
GN=MADS22 PE=2 SV=1
Length = 228
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
MARE+ +I++I++ ARQVTFSKRRRGLFKKAEELSVLCDA+V +I+FS+TGKL +SS
Sbjct: 1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60
Query: 61 SFITLWFHKSSHITSF 76
S + ++H +
Sbjct: 61 SMNEIIDKYNTHSNNL 76
>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana
GN=AGL15 PE=1 SV=1
Length = 268
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 54/75 (72%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N +RQVTFSKRR GL KKA ELSVLCDAEV VI+FS +GKLFE SS+
Sbjct: 1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSST 60
Query: 61 SFITLWFHKSSHITS 75
+H +S
Sbjct: 61 GMKQTLSRYGNHQSS 75
>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1
Length = 259
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N T RQVTFSKRR GL KKA EL+VLCDA VGV+IFS+TGK+FE S
Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60
Query: 61 S 61
+
Sbjct: 61 A 61
>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica
GN=MADS29 PE=2 SV=1
Length = 260
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N T RQVTFSKRR GL KKA EL+VLCDA VGV+IFS+TGK+FE S
Sbjct: 1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60
Query: 61 S 61
+
Sbjct: 61 T 61
>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana
GN=AGL18 PE=2 SV=1
Length = 256
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 52/59 (88%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS 59
M R +I+I+KI+NI +RQVTFSKRR GL KKA+ELS+LCDAEV +IIFS+TGK+++ SS
Sbjct: 1 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSS 59
>sp|Q84NC2|MAD31_ORYSJ MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica
GN=MADS31 PE=2 SV=1
Length = 178
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 51/62 (82%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R +++++KI+N T RQVTFSKRR GL KKA EL++LCDA++GVI+FS TGK++E SS
Sbjct: 1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSP 60
Query: 61 SF 62
+
Sbjct: 61 PW 62
>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica
GN=MADS25 PE=2 SV=2
Length = 227
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI I++IDN RQVTFSKRR GL KKA EL++LCDA+VG+I+FS TG+L++ SSS
Sbjct: 1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSS 60
Query: 61 SF 62
S
Sbjct: 61 SM 62
>sp|Q8RYD9|TT16_ARATH Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1
SV=1
Length = 252
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS- 59
M R KI+I+KI+N TARQVTFSKRR GL KK ELS+LCDA +G+I+FSATGKL E S
Sbjct: 1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60
Query: 60 ----SSFITLWFHKSS 71
I + H +
Sbjct: 61 QNRMPQLIDRYLHTNG 76
>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana
GN=AGL14 PE=1 SV=2
Length = 221
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 51/64 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +IIFS GKL+E SSS
Sbjct: 1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60
Query: 61 SFIT 64
S I
Sbjct: 61 SSIP 64
>sp|Q38841|AGL12_ARATH Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana
GN=AGL12 PE=2 SV=2
Length = 211
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE 56
MAR KI++++I+N RQVTF KRR GL KKA+ELSVLCDAE+GV+IFS GKLFE
Sbjct: 1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFE 56
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++
Sbjct: 1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica
GN=MADS2 PE=2 SV=1
Length = 209
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N T RQVTFSKRR G+ KKA E+SVLCDAEVGV+IFS+ GKL++ S
Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60
>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2
SV=1
Length = 231
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
MAR KI+I++I+N T RQVT+SKRR GLFKKA EL+VLCDA+V +I+ S+TGKL E S
Sbjct: 1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISP 60
Query: 61 SFIT 64
S T
Sbjct: 61 SITT 64
>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15
PE=3 SV=1
Length = 264
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N +RQVTFSKRR GL KKA ELSVLCDAEV VI+FS +GKLFE SS+
Sbjct: 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSST 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q38840|AGL17_ARATH Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana
GN=AGL17 PE=2 SV=2
Length = 227
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI I+KID+ T+RQVTFSKRR+GL KKA+EL++LCDAEV +IIFS T KL++ +SS
Sbjct: 1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q03488|FBP1_PETHY Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1
Length = 210
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+
Sbjct: 1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60
Query: 61 SFITL--WFHK 69
S + + +HK
Sbjct: 61 SLVDILDQYHK 71
>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica
GN=MADS1 PE=1 SV=1
Length = 257
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K+++++I+N +RQVTF+KRR GL KKA ELS+LCDAEV +IIFS G+LFE SSS
Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60
Query: 61 S--FITLWFHKSSHITS 75
S + TL ++S + S
Sbjct: 61 SCMYKTLERYRSCNYNS 77
>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica
GN=MADS1 PE=2 SV=2
Length = 257
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K+++++I+N +RQVTF+KRR GL KKA ELS+LCDAEV +IIFS G+LFE SSS
Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60
Query: 61 S--FITLWFHKSSHITS 75
S + TL ++S + S
Sbjct: 61 SCMYKTLERYRSCNYNS 77
>sp|Q42429|AGL8_SOLTU Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 250
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS GKLFE ++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|Q8RVL4|DEF21_ANTMA MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1
Length = 247
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI++++I+N T+RQVTFSKRR GL KK ELSVLCDA++G+I+FS GKL E +
Sbjct: 1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60
Query: 61 SF 62
F
Sbjct: 61 PF 62
>sp|O22328|AGL8_SOLCO Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii
GN=SCM1 PE=2 SV=1
Length = 250
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS GKLFE ++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATD 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG
PE=1 SV=2
Length = 252
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E S++S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 77
>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1
SV=1
Length = 242
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
+ R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76
Query: 61 S 61
S
Sbjct: 77 S 77
>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum
lycopersicum GN=TDR4 PE=2 SV=1
Length = 227
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS GKLFE ++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q0DEB8|MADS5_ORYSJ MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica
GN=MADS5 PE=1 SV=1
Length = 225
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K+++++I+N +RQVTF+KRR GL KKA ELSVLCDAEV +IIFS G+LFE S+S
Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|A2Y9P0|MADS5_ORYSI MADS-box transcription factor 5 OS=Oryza sativa subsp. indica
GN=MADS5 PE=2 SV=1
Length = 225
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K+++++I+N +RQVTF+KRR GL KKA ELSVLCDAEV +IIFS G+LFE S+S
Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2
SV=1
Length = 252
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E S++S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 77
>sp|P0DI14|AP1_BRARP Floral homeotic protein APETALA 1 OS=Brassica rapa subsp.
pekinensis GN=AP1 PE=3 SV=1
Length = 256
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GLFKKA E+SVLCDAEV +++FS GKLFE S+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2
SV=1
Length = 248
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
+ R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76
Query: 61 S 61
S
Sbjct: 77 S 77
>sp|Q39081|CAL_ARATH Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL
PE=1 SV=3
Length = 255
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GL KKA+E+SVLCDAEV +I+FS GKLFE SS
Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|Q8GTF4|AP1C_BRAOB Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
botrytis GN=AP1C PE=2 SV=1
Length = 256
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GLFKKA E+SVLCDAEV +++FS GKLFE S+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|B4YPV4|AP1C_BRAOA Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
alboglabra GN=AP1C PE=3 SV=1
Length = 256
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GLFKKA E+SVLCDAEV +++FS GKLFE S+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|Q96355|1AP1_BRAOT Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var.
italica GN=1AP1 PE=2 SV=1
Length = 256
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R ++++++I+N RQVTFSKRR GLFKKA E+SVLCDAEV +++FS GKLFE S+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 SFI 63
S +
Sbjct: 61 SCM 63
>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
Length = 214
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +IIFS GKL+E +SS
Sbjct: 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60
Query: 61 SF 62
+
Sbjct: 61 NM 62
>sp|Q03416|GLOB_TOBAC Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2
SV=1
Length = 209
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+
Sbjct: 1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60
Query: 61 SFITL--WFHK 69
S + + +HK
Sbjct: 61 SLVDILDQYHK 71
>sp|Q2QW55|MAD33_ORYSJ MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica
GN=MADS33 PE=2 SV=2
Length = 202
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 48/61 (78%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K+++R+I+N RQVTF KRR GL KKA ELSVLCDA+VGVIIFS+ GKL E +++
Sbjct: 1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATN 60
Query: 61 S 61
Sbjct: 61 G 61
>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica
GN=MADS50 PE=2 SV=1
Length = 230
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 50/61 (81%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +I+FS GKL+E +S+
Sbjct: 1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60
Query: 61 S 61
S
Sbjct: 61 S 61
>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
Length = 242
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
+ R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS G+L+E +++
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 76
Query: 61 S 61
S
Sbjct: 77 S 77
>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana
GN=AGL1 PE=1 SV=1
Length = 248
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
+ R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV ++IFS G+L+E +++
Sbjct: 16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75
Query: 61 S 61
S
Sbjct: 76 S 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,499,760
Number of Sequences: 539616
Number of extensions: 701088
Number of successful extensions: 2178
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 171
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)