Query 040972
Match_columns 87
No_of_seqs 122 out of 1065
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.8E-37 6.1E-42 189.5 2.7 73 2-74 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.5E-37 8.6E-42 193.5 2.7 77 2-78 1-77 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.3E-35 4.4E-40 188.8 1.1 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 1.5E-35 5.1E-40 186.1 -0.6 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 8.8E-35 3E-39 185.8 -0.6 69 1-69 9-77 (103)
6 3nrf_A APAG protein; structura 61.3 1.5 5.1E-05 27.5 -0.3 42 11-57 21-62 (106)
7 1rja_A Tyrosine-protein kinase 52.0 18 0.00061 21.0 3.5 42 33-74 40-86 (100)
8 2dm0_A Tyrosine-protein kinase 49.3 20 0.0007 21.7 3.6 42 33-74 52-104 (125)
9 2dly_A FYN-related kinase; BRK 47.6 26 0.00089 21.2 3.9 42 33-74 54-100 (121)
10 1m2d_A [2Fe-2S] ferredoxin; th 46.4 22 0.00076 21.2 3.4 26 44-70 64-90 (110)
11 2ky6_A Mediator of RNA polymer 46.0 19 0.00065 24.1 3.2 36 37-72 117-160 (166)
12 1r1p_A GRB2-related adaptor pr 45.4 21 0.00073 20.8 3.1 43 33-75 45-91 (100)
13 3k2m_A Proto-oncogene tyrosine 44.8 25 0.00085 20.8 3.4 42 33-74 41-87 (112)
14 1jyr_A Growth factor receptor- 44.4 18 0.00063 20.9 2.7 43 33-75 40-86 (96)
15 1blj_A P55 BLK protein tyrosin 43.9 28 0.00096 20.6 3.6 43 32-74 49-100 (114)
16 4a17_T RPL24, 60S ribosomal pr 42.2 26 0.0009 23.2 3.4 45 34-79 6-54 (158)
17 3j21_V 50S ribosomal protein L 41.6 31 0.0011 19.5 3.3 45 34-79 5-53 (66)
18 1lkk_A Human P56 tyrosine kina 41.2 28 0.00095 20.2 3.2 43 32-74 41-93 (105)
19 2ekx_A Cytoplasmic tyrosine-pr 40.1 25 0.00084 20.8 2.8 42 33-74 47-99 (110)
20 2cs0_A Hematopoietic SH2 domai 39.2 39 0.0013 20.3 3.7 42 33-74 51-98 (119)
21 2hdv_A SH2-B PH domain contain 38.3 36 0.0012 20.2 3.4 44 33-76 48-95 (111)
22 2zkr_u 60S ribosomal protein L 37.6 36 0.0012 22.5 3.5 44 34-78 4-51 (157)
23 2phn_A F420-0:gamma-glutamyl l 37.4 4.9 0.00017 28.6 -0.8 25 34-58 138-162 (254)
24 2dlz_A Protein VAV-2; RHO fami 36.8 33 0.0011 20.6 3.1 43 32-74 51-97 (118)
25 3ov1_A Growth factor receptor- 36.4 28 0.00096 21.0 2.7 42 33-74 43-88 (117)
26 4d8k_A Tyrosine-protein kinase 35.5 34 0.0012 21.8 3.1 42 33-74 112-163 (175)
27 3us4_A Megakaryocyte-associate 35.2 33 0.0011 19.7 2.8 42 33-74 41-86 (98)
28 3iz5_Z 60S ribosomal protein L 34.5 37 0.0013 22.6 3.2 44 34-78 6-53 (162)
29 3hvz_A Uncharacterized protein 34.3 42 0.0014 19.2 3.1 23 45-67 8-31 (78)
30 2eob_A 1-phosphatidylinositol- 34.2 39 0.0013 20.5 3.1 42 32-74 54-100 (124)
31 2cia_A Cytoplasmic protein NCK 34.1 31 0.0011 20.1 2.6 42 33-74 42-86 (102)
32 1a81_A SYK kinase; complex (tr 33.5 47 0.0016 22.6 3.7 43 32-74 194-241 (254)
33 1aot_F FYN protein-tyrosine ki 33.3 31 0.0011 20.0 2.5 43 32-74 42-94 (106)
34 1mil_A SHC adaptor protein; SH 33.3 33 0.0011 20.0 2.6 41 33-73 41-84 (104)
35 2eo3_A CRK-like protein; phosp 33.2 54 0.0018 19.4 3.6 42 33-74 55-100 (111)
36 1d4t_A T cell signal transduct 32.8 66 0.0023 18.5 3.9 42 33-74 41-92 (104)
37 2gsb_A RAS GTPase-activating p 32.7 43 0.0015 20.2 3.1 42 33-74 53-98 (119)
38 2eo6_A B-cell linker protein; 32.6 49 0.0017 20.5 3.5 43 33-75 62-114 (141)
39 3izc_Z 60S ribosomal protein R 32.3 25 0.00085 23.3 2.0 33 34-66 4-40 (155)
40 1vq8_U 50S ribosomal protein L 31.8 55 0.0019 18.5 3.2 45 34-79 4-52 (66)
41 3tkz_A Tyrosine-protein phosph 30.4 46 0.0016 19.5 2.9 41 33-74 44-89 (109)
42 2ge9_A Tyrosine-protein kinase 29.6 40 0.0014 20.5 2.6 31 44-74 66-99 (125)
43 4fbn_A 1-phosphatidylinositol 28.9 34 0.0012 23.4 2.4 42 33-74 158-202 (246)
44 2crh_A VAV proto-oncogene; onc 28.9 39 0.0013 21.0 2.5 43 32-74 61-107 (138)
45 2ysx_A Signaling inositol poly 28.6 71 0.0024 19.0 3.6 43 32-74 46-98 (119)
46 2ecd_A Tyrosine-protein kinase 27.8 27 0.00093 21.1 1.6 43 32-74 51-98 (119)
47 3eaz_A Tyrosine-protein kinase 27.8 41 0.0014 19.6 2.4 42 33-74 44-89 (106)
48 1i3z_A EWS/FLI1 activated tran 27.1 61 0.0021 18.6 3.1 42 33-74 40-91 (103)
49 1npb_A Fosfomycin-resistance p 27.1 59 0.002 19.0 3.0 30 44-73 101-130 (141)
50 2oq1_A Tyrosine-protein kinase 27.0 60 0.0021 22.0 3.4 43 32-74 195-242 (254)
51 1nki_A Probable fosfomycin res 26.7 74 0.0025 18.3 3.4 30 44-73 98-127 (135)
52 3s9k_A Tyrosine-protein kinase 24.2 86 0.0029 18.3 3.4 42 33-74 45-99 (118)
53 1ka6_A SH2 domain protein 1A; 23.9 96 0.0033 18.7 3.6 42 33-74 41-92 (128)
54 2kg4_A Growth arrest and DNA-d 22.9 1.6E+02 0.0056 19.3 4.8 34 43-78 123-156 (165)
55 1h9o_A Phosphatidylinositol 3- 22.9 61 0.0021 19.1 2.5 41 33-73 45-90 (112)
56 3p3d_A Nucleoporin 53; structu 22.6 78 0.0027 20.2 3.0 16 57-72 15-30 (132)
57 3hcz_A Possible thiol-disulfid 22.2 1.2E+02 0.0041 17.3 3.8 28 44-71 114-143 (148)
58 2lx9_A Ferrous iron transport 22.1 74 0.0025 18.0 2.7 32 25-56 19-50 (83)
59 2cr4_A 3BP-2, SH3 domain-bindi 21.7 61 0.0021 19.9 2.4 44 32-76 57-107 (126)
60 2rpa_A Katanin P60 ATPase-cont 21.6 7.5 0.00026 22.8 -1.8 21 29-49 16-36 (78)
61 2lnw_A VAV-2, guanine nucleoti 20.9 82 0.0028 19.0 2.8 42 33-74 58-103 (122)
62 1r9c_A Glutathione transferase 20.9 67 0.0023 18.6 2.4 28 44-71 106-133 (139)
63 2hq4_A Hypothetical protein PH 20.7 67 0.0023 21.0 2.4 24 47-70 135-158 (161)
64 2k5l_A FEOA; structure, NESG, 20.1 1.1E+02 0.0039 16.9 3.2 31 26-56 22-52 (81)
65 2zvv_Y Cyclin-dependent kinase 20.1 24 0.00083 16.4 0.1 12 15-26 15-26 (26)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.8e-37 Score=189.51 Aligned_cols=73 Identities=44% Similarity=0.668 Sum_probs=70.1
Q ss_pred CcccceeEEecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeecCCccHHHHHHHHhcCcC
Q 040972 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSFITLWFHKSSHIT 74 (87)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~ 74 (87)
||+||+|++|+|+.+|++||+||++||+|||+|||+||||+||||||||+|++|+|+++++++||++|+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.5e-37 Score=193.53 Aligned_cols=77 Identities=42% Similarity=0.624 Sum_probs=73.7
Q ss_pred CcccceeEEecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeecCCccHHHHHHHHhcCcCcchh
Q 040972 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSFITLWFHKSSHITSFLE 78 (87)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~ 78 (87)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|+|+++++||++|+..++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988765543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.3e-35 Score=188.77 Aligned_cols=71 Identities=41% Similarity=0.578 Sum_probs=69.2
Q ss_pred CCcccceeEEecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeecCCccHHHHHHHHhc
Q 040972 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSFITLWFHKSS 71 (87)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~~y~~ 71 (87)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|++|++..||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999998864
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.5e-35 Score=186.12 Aligned_cols=70 Identities=36% Similarity=0.488 Sum_probs=68.0
Q ss_pred CCcccceeEEecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeecCCccHHHHHHHHh
Q 040972 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSFITLWFHKS 70 (87)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~~y~ 70 (87)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|++|+++++|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.98 E-value=8.8e-35 Score=185.80 Aligned_cols=69 Identities=36% Similarity=0.488 Sum_probs=67.1
Q ss_pred CCcccceeEEecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeecCCccHHHHHHHH
Q 040972 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSFITLWFHK 69 (87)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~~s~~~~~vl~~y 69 (87)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|++++++.+|+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998863
No 6
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=61.34 E-value=1.5 Score=27.52 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=32.9
Q ss_pred ecCCCccccccccccchhhhhhHhhhhhcccceeEEEecCCCceeec
Q 040972 11 IDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFES 57 (87)
Q Consensus 11 I~~~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~~ 57 (87)
+.++.....||.-.-..|.++.-+|+.+| ++.|+|+|+-+..
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 34555566777777788899999999887 9999999986654
No 7
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=51.98 E-value=18 Score=21.05 Aligned_cols=42 Identities=24% Similarity=0.041 Sum_probs=28.0
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 86 (100)
T 1rja_A 40 YVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86 (100)
T ss_dssp EEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHHHHCCT
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 45666665554 3444556777655443 799999999987664
No 8
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.28 E-value=20 Score=21.74 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=27.1
Q ss_pred Hhhhhhc--------ccceeEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLC--------DAEVGVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.+ .+.-..|...++|..+.... +++.++|+.|...+.
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 104 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCC
Confidence 4577776 23334455566676554332 799999999987653
No 9
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.59 E-value=26 Score=21.16 Aligned_cols=42 Identities=21% Similarity=0.080 Sum_probs=28.6
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 54 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 100 (121)
T 2dly_A 54 FSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSD 100 (121)
T ss_dssp EEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHHHHHHHTTCCS
T ss_pred eEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHHHHHHHhhCCC
Confidence 45677766555 3344446777665544 799999999987664
No 10
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=46.38 E-value=22 Score=21.20 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=17.8
Q ss_pred eEEEecCCCceeecCC-ccHHHHHHHHh
Q 040972 44 GVIIFSATGKLFESSS-SSFITLWFHKS 70 (87)
Q Consensus 44 ~liv~~~~g~~~~~~s-~~~~~vl~~y~ 70 (87)
.++|+ |+|.+|..-+ .++.+||+.+.
T Consensus 64 ~v~V~-P~~~~y~~vt~e~v~~il~~~l 90 (110)
T 1m2d_A 64 VVVVY-PDGVWYGQVKPEDVDEIVEKHL 90 (110)
T ss_dssp CEEEE-TTTEEECSCCGGGHHHHHHHTT
T ss_pred EEEEE-eCCEEEecCCHHHHHHHHHHHH
Confidence 34445 7786665444 68999999864
No 11
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=46.03 E-value=19 Score=24.09 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=25.1
Q ss_pred hhcccceeEEEecCCCceee-cCC-------ccHHHHHHHHhcC
Q 040972 37 VLCDAEVGVIIFSATGKLFE-SSS-------SSFITLWFHKSSH 72 (87)
Q Consensus 37 ~LC~~~v~liv~~~~g~~~~-~~s-------~~~~~vl~~y~~~ 72 (87)
.-|++.|-+++|+|+.+.|. |-+ ..+++||+.++..
T Consensus 117 ~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 117 APCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp CCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 34889999999999887653 322 3567777776643
No 12
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=45.40 E-value=21 Score=20.81 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=27.7
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcCc
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHITS 75 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~~ 75 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+..
T Consensus 45 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l~ 91 (100)
T 1r1p_A 45 FSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSIS 91 (100)
T ss_dssp EEEEEECSSSEEEEECEECTTCCEESSSCEESSHHHHHHHHTTSCSS
T ss_pred EEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHHHHHHHhCCCC
Confidence 45677766555 3343455676443333 7999999999987653
No 13
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=44.75 E-value=25 Score=20.79 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 41 y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 87 (112)
T 3k2m_A 41 RSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVAD 87 (112)
T ss_dssp EEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHHHHHCCT
T ss_pred EEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHHHhhCCC
Confidence 35677776655 3444456776654333 799999999987543
No 14
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=44.43 E-value=18 Score=20.94 Aligned_cols=43 Identities=26% Similarity=0.115 Sum_probs=27.6
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcCc
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHITS 75 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~~ 75 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+-.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l~ 86 (96)
T 1jyr_A 40 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVS 86 (96)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSCSC
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCCCC
Confidence 45677766555 3333445666544333 7999999999987643
No 15
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=43.94 E-value=28 Score=20.56 Aligned_cols=43 Identities=23% Similarity=0.061 Sum_probs=28.1
Q ss_pred hHhhhhhc----c--cceeEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLC----D--AEVGVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.+ + +.-..|...++|..+..+. +++.++|+.|...+.
T Consensus 49 ~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 100 (114)
T 1blj_A 49 AFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGD 100 (114)
T ss_dssp CEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSHHHHHHHHHHCCS
T ss_pred CEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCHHHHHHHhhhCCC
Confidence 34577776 3 3334555556776554433 799999999987654
No 16
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=42.22 E-value=26 Score=23.21 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=29.8
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHHHHHhcCcCcchhh
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLWFHKSSHITSFLES 79 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~k 79 (87)
|+|..||-+| ....+-.||+++.|++....... .....|....|-
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f-~~krnPRkl~WT 54 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS-LRKVKAQKITWT 54 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH-HHTCCGGGSTTS
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH-HcccCcccchhH
Confidence 6788899887 34555668999999996655544 344445444443
No 17
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.63 E-value=31 Score=19.51 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=30.4
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHHHHHhcCcCcchhh
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLWFHKSSHITSFLES 79 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~k 79 (87)
|+|..||.+| ....+-.||+++.|.+...+... .....|....|-
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f-~~krnPRkl~WT 53 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYY-FMGRNPRKLKWT 53 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHH-HTTCCTTTCSSS
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHH-HcCCCcccchHH
Confidence 6778888887 45555668999999997666554 344555555443
No 18
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=41.17 E-value=28 Score=20.21 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=27.3
Q ss_pred hHhhhhhc-----ccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLC-----DAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC-----~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.+ +-.| ..|...++|..+..+. +++.++|+.|...+.
T Consensus 41 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LI~~y~~~~~ 93 (105)
T 1lkk_A 41 SFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASD 93 (105)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSHHHHHHHHHHCCT
T ss_pred cEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCHHHHHHHHhhCCC
Confidence 34577776 2333 4444556676554432 799999999987654
No 19
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=40.11 E-value=25 Score=20.78 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred Hhhhhhc--------ccceeEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLC--------DAEVGVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.+ .+.-..|...++|..+.... +++.++|+.|...+.
T Consensus 47 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 47 YTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp EEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 4566665 23334444556676554332 799999999987663
No 20
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=39.24 E-value=39 Score=20.34 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=27.5
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecC-C---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESS-S---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~-s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+..+ . +++.++|+.|...+.
T Consensus 51 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~sl~eLV~~y~~~~l 98 (119)
T 2cs0_A 51 YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPI 98 (119)
T ss_dssp EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHHHHHTTSCC
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCCCHHHHHHHHhhCcC
Confidence 45666666555 344455566654442 2 799999999998764
No 21
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Probab=38.26 E-value=36 Score=20.19 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=27.6
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcCcc
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHITSF 76 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~~~ 76 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+...
T Consensus 48 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l~~ 95 (111)
T 2hdv_A 48 CVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDMLEHFRVHPIPL 95 (111)
T ss_dssp EEEEEEETTEEEEEEEEECTTCCEEETTEEESSHHHHHHHHTTSCCC-
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEeCCceeCCHHHHHHHHhhCCccc
Confidence 45666666555 3344456676543322 79999999999876544
No 22
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.55 E-value=36 Score=22.51 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=28.9
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHHHHHhcCcCcchh
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLWFHKSSHITSFLE 78 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~ 78 (87)
|+|..||.+| ..+.+-.||+++.|++....... .....|....|
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f-~~krnPRKl~W 51 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAF-LSKRNPRQINW 51 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHH-HTTCCTTTCTT
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHH-HccCCcccchh
Confidence 6788899987 34455668999999997655542 33344444444
No 23
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=37.42 E-value=4.9 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.8
Q ss_pred hhhhhcccceeEEEecCCCceeecC
Q 040972 34 ELSVLCDAEVGVIIFSATGKLFESS 58 (87)
Q Consensus 34 ELs~LC~~~v~liv~~~~g~~~~~~ 58 (87)
+|.-.+|++|.+||++++|.+|..+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g 162 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRG 162 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhcc
Confidence 4667889999999999988765543
No 24
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.84 E-value=33 Score=20.64 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=26.6
Q ss_pred hHhhhhhcccce-eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEV-GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v-~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.| ...|...+|..+.... +++.++|+.|...+.
T Consensus 51 ~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~LV~~y~~~~l 97 (118)
T 2dlz_A 51 RFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSL 97 (118)
T ss_dssp CEEEEEECSSSEEEEEEEEETTEEESTTSCCBSSHHHHHHHHTTSCT
T ss_pred CEEEEEEECCcEEEEEEEEcCCEEEEeCCcccCCHHHHHHHHhhCcc
Confidence 345677776555 2333333555443322 799999999998764
No 25
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=36.40 E-value=28 Score=21.01 Aligned_cols=42 Identities=24% Similarity=0.100 Sum_probs=27.2
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+-
T Consensus 43 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV~~y~~~~l 88 (117)
T 3ov1_A 43 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88 (117)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTTSCS
T ss_pred EEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHHHHHhhCCC
Confidence 45666666555 3333455666544333 799999999998764
No 26
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=35.51 E-value=34 Score=21.76 Aligned_cols=42 Identities=19% Similarity=0.046 Sum_probs=27.2
Q ss_pred Hhhhhhc-----c--cceeEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLC-----D--AEVGVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC-----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.+ + +.-..|...++|..+.... +++.++|+.|...+.
T Consensus 112 y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 163 (175)
T 4d8k_A 112 FSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASD 163 (175)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCCT
T ss_pred EEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCCC
Confidence 3466665 3 3334555566777655442 799999999987654
No 27
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=35.16 E-value=33 Score=19.67 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred Hhhhhhcccce-eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV-GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v-~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ...|...+|..+.-+. +++.++|+.|...+.
T Consensus 41 y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~Lv~~y~~~~~ 86 (98)
T 3us4_A 41 YVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVEHYSKDKG 86 (98)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEESSSSSEESSHHHHHHHHHHCCT
T ss_pred EEEEEEECCceEEEEEEEeCCEEEECCCCccCCHHHHHHHhhhCCC
Confidence 45666666555 2333334454433222 799999999987664
No 28
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=34.49 E-value=37 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=28.7
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHHHHHhcCcCcchh
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLWFHKSSHITSFLE 78 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~ 78 (87)
|+|..||.+| ....+-.||+++.|++........ ....|....|
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~-~krnPRKl~W 53 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFH-NRLKPAKLTW 53 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHH-HTCCGGGTSS
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHH-cccCcccchh
Confidence 6788899887 345556689999999976555442 3444444444
No 29
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=34.34 E-value=42 Score=19.20 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=18.0
Q ss_pred EEEecCCCceeecCC-ccHHHHHH
Q 040972 45 VIIFSATGKLFESSS-SSFITLWF 67 (87)
Q Consensus 45 liv~~~~g~~~~~~s-~~~~~vl~ 67 (87)
+.||.|+|++..++. ..+.++..
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHH
T ss_pred EEEECCCCCEEEecCCCCHHHHHH
Confidence 678999999998887 56666654
No 30
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=34.16 E-value=39 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=25.7
Q ss_pred hHhhhhhccccee-EEEecCCCceeecCC----ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEVG-VIIFSATGKLFESSS----SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v~-liv~~~~g~~~~~~s----~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.|- ..|.. +|..|.... +++.++|+.|...+.
T Consensus 54 ~y~LSv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~LV~~y~~~~~ 100 (124)
T 2eob_A 54 SYAITFRARGKVKHCRINR-DGRHFVLGTSAYFESLVELVSYYEKHAL 100 (124)
T ss_dssp CEEEEEEETTEEEEEEEEE-SSSCEESSSSCCBSSHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCeEEEEEEEE-CCCEEEECCCCcCCCHHHHHHHHhhCCC
Confidence 3557777765552 33333 344443322 689999999998764
No 31
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=34.10 E-value=31 Score=20.12 Aligned_cols=42 Identities=7% Similarity=-0.094 Sum_probs=25.2
Q ss_pred Hhhhhhcccce-eEEEecCCCceeecCC--ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV-GVIIFSATGKLFESSS--SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v-~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ...|...+|..+.... +++.++|+.|...+-
T Consensus 42 ~~LSv~~~~~v~H~~I~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 86 (102)
T 2cia_A 42 FSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPI 86 (102)
T ss_dssp EEEEECCSSSCEEEEEEEETTEEEETTEEESSHHHHHHHHHHSCS
T ss_pred EEEEEEeCCeeEEEEEEecCCEEEECCcCcCCHHHHHHHHhhCcc
Confidence 45666665544 2333344554333222 799999999997664
No 32
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*
Probab=33.49 E-value=47 Score=22.59 Aligned_cols=43 Identities=26% Similarity=0.167 Sum_probs=29.0
Q ss_pred hHhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 194 ~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 241 (254)
T 1a81_A 194 SYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKAD 241 (254)
T ss_dssp CEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHHHHHTTCCT
T ss_pred CEEEEEEECCEEEEEEEEEcCCCCEEecCCcccCCHHHHHHHHHHCCC
Confidence 345777776555 4444566776554333 799999999987764
No 33
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=33.34 E-value=31 Score=20.02 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=26.8
Q ss_pred hHhhhhhc-----ccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLC-----DAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC-----~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.+ +-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 42 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 94 (106)
T 1aot_F 42 AYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAA 94 (106)
T ss_dssp BBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESSHHHHHHHHTTCCT
T ss_pred CEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCCHHHHHHHhccCCC
Confidence 34566664 3233 4444556676554433 799999999987654
No 34
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=33.32 E-value=33 Score=20.05 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=25.3
Q ss_pred Hhhhhhcccce-eEEEecCCCceeecCC--ccHHHHHHHHhcCc
Q 040972 33 EELSVLCDAEV-GVIIFSATGKLFESSS--SSFITLWFHKSSHI 73 (87)
Q Consensus 33 ~ELs~LC~~~v-~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~ 73 (87)
.-||+.++-.| ...|..++|....... +++.++|+.|...+
T Consensus 41 ~~LSv~~~~~v~H~~I~~~~g~~~~~~~~F~sl~~LI~~y~~~~ 84 (104)
T 1mil_A 41 YVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNH 84 (104)
T ss_dssp EEEEEEETTEEEEEEEBCTTSSEECSSCEESSHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEEEEEEeCCCEEEECCceeCCHHHHHHHHhhCC
Confidence 45666666555 3334455565433222 79999999998755
No 35
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.22 E-value=54 Score=19.36 Aligned_cols=42 Identities=17% Similarity=0.017 Sum_probs=26.5
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 55 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 100 (111)
T 2eo3_A 55 YVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYL 100 (111)
T ss_dssp EEEEEEETTEEEEEEEEEETTTEEEETTCCBSSHHHHHHHHTTSCS
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCCC
Confidence 45666666555 3343446665443222 799999999987664
No 36
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=32.80 E-value=66 Score=18.53 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=26.8
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecC-----C---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESS-----S---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~-----s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+... . +++.++|+.|...+.
T Consensus 41 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~LV~~y~~~~~ 92 (104)
T 1d4t_A 41 YCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQ 92 (104)
T ss_dssp EEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSHHHHHHHHTSSSS
T ss_pred EEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCHHHHHHHHhhCCC
Confidence 45666666555 334345666544431 2 799999999997764
No 37
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.74 E-value=43 Score=20.16 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=26.7
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC--ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s--~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 53 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LI~~y~~~~l 98 (119)
T 2gsb_A 53 YSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQI 98 (119)
T ss_dssp EEEEEECSSCBCCCCEEEETTTEEEESSCCBSCHHHHHHHHTTSCS
T ss_pred eEEEEEECCEEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCcc
Confidence 45666665433 4455556665444332 799999999997654
No 38
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=32.55 E-value=49 Score=20.51 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=28.5
Q ss_pred HhhhhhcccceeEE-E-ecCCCceeecC-----C---ccHHHHHHHHhcCcCc
Q 040972 33 EELSVLCDAEVGVI-I-FSATGKLFESS-----S---SSFITLWFHKSSHITS 75 (87)
Q Consensus 33 ~ELs~LC~~~v~li-v-~~~~g~~~~~~-----s---~~~~~vl~~y~~~~~~ 75 (87)
+-||+.++-.|--+ | ..++|..|.+. . +++.++|+.|...+..
T Consensus 62 y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~sl~eLV~~y~~~~~~ 114 (141)
T 2eo6_A 62 YTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLV 114 (141)
T ss_dssp EEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBSSHHHHHHHHHHSCCC
T ss_pred EEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccCCHHHHHHHHhhCCcc
Confidence 45677776666333 3 34677766554 1 7999999999876654
No 39
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=32.35 E-value=25 Score=23.26 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=24.3
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHH
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLW 66 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl 66 (87)
|+|..||-+| ....+-.||+++.|++.......
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 40 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLF 40 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHH
Confidence 6788899887 34555668999999996655543
No 40
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=31.77 E-value=55 Score=18.46 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=29.2
Q ss_pred hhhhhcccce----eEEEecCCCceeecCCccHHHHHHHHhcCcCcchhh
Q 040972 34 ELSVLCDAEV----GVIIFSATGKLFESSSSSFITLWFHKSSHITSFLES 79 (87)
Q Consensus 34 ELs~LC~~~v----~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~k 79 (87)
|+|..||.+| ....+-.||+++.|.+....... .....|....|-
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f-~~krnPRkl~WT 52 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNA-DLGREARNLEWT 52 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHH-HTTCCGGGCTTS
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHH-HcccCcccchhH
Confidence 6788888887 34445568999999997666553 334445444443
No 41
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=30.39 E-value=46 Score=19.46 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=24.6
Q ss_pred Hhhhhhccccee-EEEecCCCceeec-CC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEVG-VIIFSATGKLFES-SS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v~-liv~~~~g~~~~~-~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.|- ..|.. +|..|.+ +. +++.++|+.|...+.
T Consensus 44 y~LSv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~LV~~y~~~~~ 89 (109)
T 3tkz_A 44 FTLSVRRNGAVTHIKIQN-TGDYYDLYGGEKFATLAELVQYYMEHHG 89 (109)
T ss_dssp EEEEEEETTEEEEEEEEE-CSSCEESSSSCCBSSHHHHHHHHHHSTT
T ss_pred EEEEEEECCEEEEEEEEe-CCCEEEecCCcccCCHHHHHHHHHhCcC
Confidence 346666665552 23333 3444433 22 799999999987663
No 42
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=29.63 E-value=40 Score=20.49 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=20.7
Q ss_pred eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 44 GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 44 ~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..|...++|..+.... +++.++|+.|...+.
T Consensus 66 ~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 99 (125)
T 2ge9_A 66 YVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSA 99 (125)
T ss_dssp EECEEETTTEEESSTTSCBSSHHHHHHHHHCCCT
T ss_pred EEEEEcCCCCEEECCCCcCCCHHHHHHHhhhCCC
Confidence 4444556676444332 799999999987653
No 43
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=28.90 E-value=34 Score=23.42 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=28.1
Q ss_pred HhhhhhcccceeEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEVGVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||++++-.|--+.+..+|..+.... +++.++|+.|...|.
T Consensus 158 y~Lsv~~~~~v~H~~I~~~~~~~~~~~~~F~sL~~Lv~~y~~~p~ 202 (246)
T 4fbn_A 158 YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPL 202 (246)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEETTEEESCHHHHHHHHHHSCS
T ss_pred EEEEEEeCCCeEEEEEEeCCCEEEeCCCccCCHHHHHHHhCcCCC
Confidence 457777776664444444555555444 789999999987664
No 44
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Probab=28.88 E-value=39 Score=21.00 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=26.8
Q ss_pred hHhhhhhcccce-eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEV-GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v-~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.| ...|..++|..+.... +++.++|+.|...+.
T Consensus 61 ~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~eLV~~y~~~~l 107 (138)
T 2crh_A 61 EFAISIKYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSL 107 (138)
T ss_dssp CCEEEEEETTEEEEEECEEETTEEESSTTCCBSSHHHHHHHHTTSCG
T ss_pred CEEEEEEECCeEEEEEEEeCCCEEEECCCCccCCHHHHHHHHHhCcc
Confidence 345677766555 2233455665443322 789999999997763
No 45
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=28.57 E-value=71 Score=19.02 Aligned_cols=43 Identities=19% Similarity=0.012 Sum_probs=27.5
Q ss_pred hHhhhhhcccce--eEEEecCCCceeecC-------C-ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEV--GVIIFSATGKLFESS-------S-SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v--~liv~~~~g~~~~~~-------s-~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.| ..|...++|..+... . +++.++|+.|...+.
T Consensus 46 ~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~eLV~~y~~~~~ 98 (119)
T 2ysx_A 46 AYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENM 98 (119)
T ss_dssp SEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBSSHHHHHHHTTSSSS
T ss_pred CEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccCCHHHHHHHHhhCCC
Confidence 345677766555 334445667654432 2 789999999987654
No 46
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.78 E-value=27 Score=21.06 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=26.6
Q ss_pred hHhhhhhcccceeE--EEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEVGV--IIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v~l--iv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.|-- |...++|..+.... +++.++|+.|...+.
T Consensus 51 ~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 98 (119)
T 2ecd_A 51 QLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVAD 98 (119)
T ss_dssp EEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSHHHHHHHHHHCCT
T ss_pred CEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCHHHHHHHHhhCCC
Confidence 34566666655532 32345676554332 799999999987543
No 47
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=27.76 E-value=41 Score=19.56 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=25.0
Q ss_pred Hhhhhhcccce-eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV-GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v-~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ...|...+|..+..+. +++.++|+.|...+.
T Consensus 44 ~~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~Lv~~y~~~~~ 89 (106)
T 3eaz_A 44 YTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTSDAD 89 (106)
T ss_dssp EEEEEEETTEEEEEECEEETTEEESSSSSCBSSHHHHHHHHHHCCT
T ss_pred EEEEEEeCCceEEEEEEecCCEEEECCCCccCCHHHHHHHHhhCCC
Confidence 35666666555 2233333555443322 789999999987654
No 48
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=27.14 E-value=61 Score=18.61 Aligned_cols=42 Identities=14% Similarity=-0.091 Sum_probs=27.0
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecC-----C---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESS-----S---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~-----s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+... . +++.++|+.|...+.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~LV~~y~~~~~ 91 (103)
T 1i3z_A 40 LCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQ 91 (103)
T ss_dssp EEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHHHHHHTTSSSS
T ss_pred EEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHHHHHHHhhCCC
Confidence 45677776555 334345667654431 2 789999999987653
No 49
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2
Probab=27.11 E-value=59 Score=18.96 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=23.5
Q ss_pred eEEEecCCCceeecCCccHHHHHHHHhcCc
Q 040972 44 GVIIFSATGKLFESSSSSFITLWFHKSSHI 73 (87)
Q Consensus 44 ~liv~~~~g~~~~~~s~~~~~vl~~y~~~~ 73 (87)
.+.+.+|+|..+++.++...+.+..|...+
T Consensus 101 ~~~~~DPdG~~iel~~~~~~~~l~~~~~~~ 130 (141)
T 1npb_A 101 SFYFLDPDGHKLELHVGSLAARLAACREKP 130 (141)
T ss_dssp EEEEECTTCCEEEEEECCHHHHHHHHHHSC
T ss_pred EEEEECCCCCEEEEEECchhhhHHHhccCC
Confidence 456679999999888777788888887654
No 50
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Probab=27.04 E-value=60 Score=22.01 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=28.6
Q ss_pred hHhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 32 AEELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 32 a~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
..-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 195 ~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 242 (254)
T 2oq1_A 195 TYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKAD 242 (254)
T ss_dssp EEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHHHHHHHCCT
T ss_pred CEEEEEEECCeEEEEEEEEcCCCCEEECCCceECCHHHHHHHHHhCCC
Confidence 345777776655 3344466776554433 799999999987664
No 51
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=26.67 E-value=74 Score=18.33 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=22.9
Q ss_pred eEEEecCCCceeecCCccHHHHHHHHhcCc
Q 040972 44 GVIIFSATGKLFESSSSSFITLWFHKSSHI 73 (87)
Q Consensus 44 ~liv~~~~g~~~~~~s~~~~~vl~~y~~~~ 73 (87)
.+.+.+|+|..+++.++...+.+..|...+
T Consensus 98 ~~~~~DPdG~~iel~~~~~~~~~~~~~~~~ 127 (135)
T 1nki_A 98 SFYFLDPDGHRLEAHVGDLRSRLAACRQAP 127 (135)
T ss_dssp EEEEECTTCCEEEEESCCHHHHHHHHHHSC
T ss_pred EEEEECCCCCEEEEEECCchHHHHHHhcCC
Confidence 456789999999887766678888886543
No 52
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=24.16 E-value=86 Score=18.34 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=26.0
Q ss_pred Hhhhhhcc------cce-eEEE---ecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCD------AEV-GVII---FSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~------~~v-~liv---~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.+. -.| ...| ..++|..+.... +++.++|+.|...+.
T Consensus 45 y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 99 (118)
T 3s9k_A 45 YTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGG 99 (118)
T ss_dssp EEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECSCCCSCHHHHHHHHHHCCT
T ss_pred EEEEEEecccccCCCceEEEEEeEEECCCCCEEECCCcccCCHHHHHHHheeCCC
Confidence 45666663 333 3333 345666554333 799999999987663
No 53
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=23.90 E-value=96 Score=18.73 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=27.0
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecC-----C---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESS-----S---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~-----s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ..|...++|..+... . +++.++|+.|...+.
T Consensus 41 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~LV~~y~~~~~ 92 (128)
T 1ka6_A 41 YCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQ 92 (128)
T ss_dssp EEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSHHHHHHHTTSSCS
T ss_pred EEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCHHHHHHHHhhCCC
Confidence 45677766555 334445667655441 2 799999999987653
No 54
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=22.89 E-value=1.6e+02 Score=19.34 Aligned_cols=34 Identities=6% Similarity=-0.121 Sum_probs=19.6
Q ss_pred eeEEEecCCCceeecCCccHHHHHHHHhcCcCcchh
Q 040972 43 VGVIIFSATGKLFESSSSSFITLWFHKSSHITSFLE 78 (87)
Q Consensus 43 v~liv~~~~g~~~~~~s~~~~~vl~~y~~~~~~~~~ 78 (87)
.|++|.+++.. .|-++..+.+.+.+...-...+|
T Consensus 123 scv~V~~~g~~--s~~~~a~~~l~~~~~e~r~~~~~ 156 (165)
T 2kg4_A 123 HCVLVTNPHSS--QWKDPALSQLICFCRESRYMDQW 156 (165)
T ss_dssp CEEEEECCSSC--CCCCHHHHHHHHHHHHHHTTTCS
T ss_pred eEEEEeccccc--cccchHHHHHHHHHHHhhhccCC
Confidence 46666665432 25556677777766655544444
No 55
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Probab=22.87 E-value=61 Score=19.10 Aligned_cols=41 Identities=37% Similarity=0.297 Sum_probs=24.6
Q ss_pred Hhhhhhcccce--eEEEecCCCceeecCC---ccHHHHHHHHhcCc
Q 040972 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHI 73 (87)
Q Consensus 33 ~ELs~LC~~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~ 73 (87)
.-||+.++-.| ..|...++|-.+.... +++.++|+.|...+
T Consensus 45 y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~ 90 (112)
T 1h9o_A 45 YACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLHYQHTS 90 (112)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHHHHHSC
T ss_pred EEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHHHHHHhhCc
Confidence 45666665555 3344455553332221 79999999998754
No 56
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=22.60 E-value=78 Score=20.22 Aligned_cols=16 Identities=0% Similarity=-0.284 Sum_probs=13.2
Q ss_pred cCCccHHHHHHHHhcC
Q 040972 57 SSSSSFITLWFHKSSH 72 (87)
Q Consensus 57 ~~s~~~~~vl~~y~~~ 72 (87)
||......||+.|.+.
T Consensus 15 Fp~~~~~~VI~~Fs~~ 30 (132)
T 3p3d_A 15 YPETMANQVIAYFQEF 30 (132)
T ss_dssp CCGGGHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHhh
Confidence 7778889999999864
No 57
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=22.16 E-value=1.2e+02 Score=17.29 Aligned_cols=28 Identities=0% Similarity=0.052 Sum_probs=19.9
Q ss_pred eEEEecCCCcee-ecCC-ccHHHHHHHHhc
Q 040972 44 GVIIFSATGKLF-ESSS-SSFITLWFHKSS 71 (87)
Q Consensus 44 ~liv~~~~g~~~-~~~s-~~~~~vl~~y~~ 71 (87)
.+++++++|++. .+.. ..++++++.+.+
T Consensus 114 ~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 114 VLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp EEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred EEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 467788899864 4444 778888887754
No 58
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=22.14 E-value=74 Score=18.05 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=26.6
Q ss_pred cchhhhhhHhhhhhcccceeEEEecCCCceee
Q 040972 25 RRGLFKKAEELSVLCDAEVGVIIFSATGKLFE 56 (87)
Q Consensus 25 k~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~ 56 (87)
...+.++..+|-+..|++|.++-.+|-|.+..
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~ 50 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIH 50 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEE
Confidence 35678899999999999999999998665543
No 59
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.73 E-value=61 Score=19.91 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=27.3
Q ss_pred hHhhhhhcc--cce--eEEEecCCCceeecCC---ccHHHHHHHHhcCcCcc
Q 040972 32 AEELSVLCD--AEV--GVIIFSATGKLFESSS---SSFITLWFHKSSHITSF 76 (87)
Q Consensus 32 a~ELs~LC~--~~v--~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~~~ 76 (87)
..-||+.++ -.| ..|... ++..+.... +++.++|+.|+..+...
T Consensus 57 ~y~LSv~~~~~~~vkH~rI~~~-~~~~~i~~~~~F~sL~eLV~hY~~~~l~~ 107 (126)
T 2cr4_A 57 GKVLVVWDETSNKVRNYRIFEK-DSKFYLEGEVLFVSVGSMVEHYHTHVLPS 107 (126)
T ss_dssp CEEEEEEETTTTEECCEECEEE-TTEEESSSSCEESSHHHHHHHHTTSCCSS
T ss_pred CEEEEEEeCCCCCEEEEEEEEC-CCeEEEcCCccCCCHHHHHHHHhhCCcCC
Confidence 456777776 444 334333 344444333 79999999999766543
No 60
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.56 E-value=7.5 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.1
Q ss_pred hhhhHhhhhhcccceeEEEec
Q 040972 29 FKKAEELSVLCDAEVGVIIFS 49 (87)
Q Consensus 29 ~KKa~ELs~LC~~~v~liv~~ 49 (87)
.++|.|.+.+++=|.|++.|.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~ 36 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ 36 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH
Confidence 589999999999888887775
No 61
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=20.90 E-value=82 Score=19.01 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=24.4
Q ss_pred Hhhhhhcccce-eEEEecCCCceeecCC---ccHHHHHHHHhcCcC
Q 040972 33 EELSVLCDAEV-GVIIFSATGKLFESSS---SSFITLWFHKSSHIT 74 (87)
Q Consensus 33 ~ELs~LC~~~v-~liv~~~~g~~~~~~s---~~~~~vl~~y~~~~~ 74 (87)
.-||+.++-.| ...|...+|..+.-.. +++.++|+.|...+-
T Consensus 58 y~LSv~~~~~v~H~~I~~~~~~~~l~~~~~F~sl~eLV~~y~~~~l 103 (122)
T 2lnw_A 58 FAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSL 103 (122)
T ss_dssp EEEEEECSSCEEEEEEEEETTEEESSSSCCBSSHHHHHHHHHHSCG
T ss_pred EEEEEEeCCcEEEEEEEEcCCEEEECCCCeECCHHHHHHHHhhCcC
Confidence 35666666555 2233333343332222 799999999998754
No 62
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2
Probab=20.88 E-value=67 Score=18.63 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=18.9
Q ss_pred eEEEecCCCceeecCCccHHHHHHHHhc
Q 040972 44 GVIIFSATGKLFESSSSSFITLWFHKSS 71 (87)
Q Consensus 44 ~liv~~~~g~~~~~~s~~~~~vl~~y~~ 71 (87)
.+.+.+|+|..+++.+..+.+-|++|..
T Consensus 106 ~~~~~DPdG~~iel~~~~~~~~l~~~~~ 133 (139)
T 1r9c_A 106 SIYFYDDDNHMFELHTGTLTERLARKAK 133 (139)
T ss_dssp EEEEECTTSCEEEEECCCHHHHHHC---
T ss_pred EEEEECCCCCEEEEEeCChhHHHHHHHH
Confidence 3567799999998877666666776654
No 63
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=20.69 E-value=67 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.1
Q ss_pred EecCCCceeecCCccHHHHHHHHh
Q 040972 47 IFSATGKLFESSSSSFITLWFHKS 70 (87)
Q Consensus 47 v~~~~g~~~~~~s~~~~~vl~~y~ 70 (87)
+.++.|.++.|.-|++.++|-+|.
T Consensus 135 ilD~kg~LfvFNKPs~~e~ilKYi 158 (161)
T 2hq4_A 135 ILDPRGRLFIFNKPSIANKILKYI 158 (161)
T ss_dssp EECTTSEEEEESSTTHHHHHHTTT
T ss_pred EECCCceEEEecCccHHHHHHHHH
Confidence 346678899999999999998885
No 64
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.13 E-value=1.1e+02 Score=16.92 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=25.7
Q ss_pred chhhhhhHhhhhhcccceeEEEecCCCceee
Q 040972 26 RGLFKKAEELSVLCDAEVGVIIFSATGKLFE 56 (87)
Q Consensus 26 ~gL~KKa~ELs~LC~~~v~liv~~~~g~~~~ 56 (87)
..+.++..++-+..|++|.++-.+|-|.+..
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~ 52 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQ 52 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 5678899999999999999998888665443
No 65
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=20.07 E-value=24 Score=16.37 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.0
Q ss_pred Cccccccccccc
Q 040972 15 TARQVTFSKRRR 26 (87)
Q Consensus 15 ~~R~~tf~KRk~ 26 (87)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456777777763
Done!