BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040974
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 136/285 (47%), Gaps = 4/285 (1%)
Query: 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGN 123
++L G++ DF L LDLS N +G +PP + + L L N FSG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 124 IPPEVGL-MSHLMFLYIDTNHLDGSIPPELGQLS-SIVELSLFSNHLNGSVPPSLSN--L 179
+P + L M L L + N G +P L LS S++ L L SN+ +G + P+L
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 180 TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXX 239
L L+LQ+N F+G IPP + N + L+LS N SG IP
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKM 299
+ G IP L +K+L L L N LTG IPS N T N+L G IP IG++
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLL 344
+L+IL LS N F G +P + + +L L L N +G+IP +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 146/327 (44%), Gaps = 47/327 (14%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLD 145
L L L N G IPP +SN + L+ L+ N SG IP +G +S L L + N L+
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 146 GSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205
G IP EL + ++ L L N L G +P LSN T+L + L +N +G IP IG ++
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 206 MSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSL----GKLKSLFN----- 256
+++L LS+N FSG IP +G+IP+++ GK+ + F
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 257 ------------------LQLKG------NQLT-------------GYIPSSFRNLTGXX 279
L+ +G N+L+ G+ +F N
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 280 XXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339
N L G IP EIG M L IL+L N G +P V +L L L L N L G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 340 IPPLLEN-PMLTQLSLDNNHFTGYLPH 365
IP + MLT++ L NN+ +G +P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 6/260 (2%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLD 145
L L L +N L G IP +SN TNL + N+ +G IP +G + +L L + N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 146 GSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205
G+IP ELG S++ L L +N NG++P ++ + + N +G I N
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGM 580
Query: 206 MSVLYLSSN--KFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQ 263
+ + N +F G G + S+ L + N
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 264 LTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNL 323
L+GYIP ++ N + GSIPDE+G +R L+ILDLS N+ G +P ++S L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 324 TNLKELVLLYNNLSGSIPPL 343
T L E+ L NNLSG IP +
Sbjct: 701 TMLTEIDLSNNNLSGPIPEM 720
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 50/332 (15%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLT---------------------------NLIHLYFGGN 118
L LDLS+N+ G +P ++NL+ L LY N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 119 QFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSN 178
F+G IPP + S L+ L++ N+L G+IP LG LS + +L L+ N L G +P L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 179 LTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXX 238
+ L L L N +G IP + N +++ + LS+N+ +G IP
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 239 XVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLF--------- 289
SG+IP+ LG +SL L L N G IP++ +G K +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 290 -------------GSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
G +++ ++ + + +++ + G P+ N ++ L + YN L
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 337 SGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367
SG IP + + P L L+L +N +G +P V
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 36/287 (12%)
Query: 86 LAYLDLSYNKLFGT--IPPQISN-LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN 142
L LDLS N + G + +S+ L HL GN+ SG++ +V +L FL + +N
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 207
Query: 143 HLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGN 202
+ IP LG S++ L + N L+G ++S T+L +L + N F G IPP
Sbjct: 208 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 264
Query: 203 SKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGN 262
KS+ L L+ NKF+G IP G +L L L GN
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDLSGN 301
Query: 263 QLTGYIPSSFRNLTGXXXXXXXQNKLFGSIP-DEIGKMRSLSILDLSQNQFKGVLPPSVS 321
G +P F + + N G +P D + KMR L +LDLS N+F G LP S++
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 322 NLT-NLKELVLLYNNLSGSI-PPLLENP--MLTQLSLDNNHFTGYLP 364
NL+ +L L L NN SG I P L +NP L +L L NN FTG +P
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 28 RSLLSSWVKDTTNVSSKTSPCAWYG----ISCNDAGRVDNITLPAKGLKGKLHDFSFSLF 83
RSL+ W+ TN+ + T P A + I+ N + + G+K + H + +L
Sbjct: 535 RSLI--WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG-AGNLL 591
Query: 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143
N+L P I++ + G+ P +MFL + N
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRV-----------YGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS 203
L G IP E+G + + L+L N ++GS+P + +L L IL L N G IP +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 204 KSMSVLYLSSNKFSGPIP 221
++ + LS+N SGPIP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 136/285 (47%), Gaps = 4/285 (1%)
Query: 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGN 123
++L G++ DF L LDLS N +G +PP + + L L N FSG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 124 IPPEVGL-MSHLMFLYIDTNHLDGSIPPELGQLS-SIVELSLFSNHLNGSVPPSLSN--L 179
+P + L M L L + N G +P L LS S++ L L SN+ +G + P+L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 180 TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXX 239
L L+LQ+N F+G IPP + N + L+LS N SG IP
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKM 299
+ G IP L +K+L L L N LTG IPS N T N+L G IP IG++
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLL 344
+L+IL LS N F G +P + + +L L L N +G+IP +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 146/327 (44%), Gaps = 47/327 (14%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLD 145
L L L N G IPP +SN + L+ L+ N SG IP +G +S L L + N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 146 GSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205
G IP EL + ++ L L N L G +P LSN T+L + L +N +G IP IG ++
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 206 MSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSL----GKLKSLFN----- 256
+++L LS+N FSG IP +G+IP+++ GK+ + F
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 257 ------------------LQLKG------NQLT-------------GYIPSSFRNLTGXX 279
L+ +G N+L+ G+ +F N
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 280 XXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339
N L G IP EIG M L IL+L N G +P V +L L L L N L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 340 IPPLLEN-PMLTQLSLDNNHFTGYLPH 365
IP + MLT++ L NN+ +G +P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 6/260 (2%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLD 145
L L L +N L G IP +SN TNL + N+ +G IP +G + +L L + N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 146 GSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205
G+IP ELG S++ L L +N NG++P ++ + + N +G I N
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGM 583
Query: 206 MSVLYLSSN--KFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQ 263
+ + N +F G G + S+ L + N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 264 LTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNL 323
L+GYIP ++ N + GSIPDE+G +R L+ILDLS N+ G +P ++S L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 324 TNLKELVLLYNNLSGSIPPL 343
T L E+ L NNLSG IP +
Sbjct: 704 TMLTEIDLSNNNLSGPIPEM 723
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 50/332 (15%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLT---------------------------NLIHLYFGGN 118
L LDLS+N+ G +P ++NL+ L LY N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 119 QFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSN 178
F+G IPP + S L+ L++ N+L G+IP LG LS + +L L+ N L G +P L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 179 LTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXX 238
+ L L L N +G IP + N +++ + LS+N+ +G IP
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 239 XVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLF--------- 289
SG+IP+ LG +SL L L N G IP++ +G K +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 290 -------------GSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
G +++ ++ + + +++ + G P+ N ++ L + YN L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 337 SGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367
SG IP + + P L L+L +N +G +P V
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 36/287 (12%)
Query: 86 LAYLDLSYNKLFGT--IPPQISN-LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN 142
L LDLS N + G + +S+ L HL GN+ SG++ +V +L FL + +N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210
Query: 143 HLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGN 202
+ IP LG S++ L + N L+G ++S T+L +L + N F G IPP
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 267
Query: 203 SKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGN 262
KS+ L L+ NKF+G IP G +L L L GN
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDLSGN 304
Query: 263 QLTGYIPSSFRNLTGXXXXXXXQNKLFGSIP-DEIGKMRSLSILDLSQNQFKGVLPPSVS 321
G +P F + + N G +P D + KMR L +LDLS N+F G LP S++
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 322 NLT-NLKELVLLYNNLSGSI-PPLLENP--MLTQLSLDNNHFTGYLP 364
NL+ +L L L NN SG I P L +NP L +L L NN FTG +P
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 28 RSLLSSWVKDTTNVSSKTSPCAWYG----ISCNDAGRVDNITLPAKGLKGKLHDFSFSLF 83
RSL+ W+ TN+ + T P A + I+ N + + G+K + H + +L
Sbjct: 538 RSLI--WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG-AGNLL 594
Query: 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143
N+L P I++ + G+ P +MFL + N
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRV-----------YGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS 203
L G IP E+G + + L+L N ++GS+P + +L L IL L N G IP +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 204 KSMSVLYLSSNKFSGPIP 221
++ + LS+N SGPIP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 150/336 (44%), Gaps = 61/336 (18%)
Query: 11 EEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCN---DAGRVDNITLP 67
++ ALL+ K L N + LSSW+ TT+ ++T W G+ C+ RV+N+ L
Sbjct: 6 QDKQALLQIKKDLGNP--TTLSSWLP-TTDCCNRT----WLGVLCDTDTQTYRVNNLDLS 58
Query: 68 AKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGG-NQFSGNIPP 126
L +P IP ++NL L LY GG N G IPP
Sbjct: 59 GLNLPKP--------YP---------------IPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 127 EVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILF 186
+ ++ L +LYI ++ G+IP L Q+ ++V L N L+G++PPS+S+L +L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 187 LQDNSFSGFIPPDIGN-SKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIP 245
N SG IP G+ SK + + +S N+ ++G IP
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNR------------------------LTGKIP 191
Query: 246 SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSIL 305
+ L F + L N L G F + +N L + ++G ++L+ L
Sbjct: 192 PTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGL 249
Query: 306 DLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
DL N+ G LP ++ L L L + +NNL G IP
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 3/200 (1%)
Query: 172 VPPSLSNLTDLFILFLQD-NSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXX 230
+P SL+NL L L++ N+ G IPP I + LY++ SG IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 231 XXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGX-XXXXXXQNKLF 289
+SG++P S+ L +L + GN+++G IP S+ + + +N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 290 GSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPML 349
G IP + +L+ +DLS+N +G + N +++ L N+L+ + + + L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 350 TQLSLDNNHFTGYLPHNVCR 369
L L NN G LP + +
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQ 266
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 89 LDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGS 147
LDL N+++GT+P ++ L L L N G IP L + Y + L GS
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 257 LQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLSQNQFKGV 315
L L NQ+T P F +L N+L G++P + + L++LDL NQ V
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 316 LPPSV-SNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH 365
LP +V L +LKEL + N L+ +P +E LT L+LD N +PH
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPH 152
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 29/167 (17%)
Query: 169 NGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXX 228
+ SVP + T+ IL+L DN + P + ++ LYL SN+
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------------ 76
Query: 229 XXXXXXXXXXXVSGSIPSSL-GKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNK 287
G++P + L L L L NQLT + F L NK
Sbjct: 77 -------------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 288 LFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYN 334
L +P I ++ L+ L L QNQ K + + L++L L N
Sbjct: 124 L-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139
F L LDL N+L L +L L+ N+ + +P + ++HL L +
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 140 DTNHLDGSIPP-ELGQLSSIVELSLFSN 166
D N L SIP +LSS+ LF N
Sbjct: 143 DQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Query: 89 LDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGL---MSHLMFLYIDTNHLD 145
L L N++ P +L NL LY G NQ G +P VG+ ++ L L + TN L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP--VGVFDSLTQLTVLDLGTNQLT 101
Query: 146 GSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205
+L + EL + N L +P + LT L L L N S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 206 MSVLYLSSNKF 216
++ YL N +
Sbjct: 161 LTHAYLFGNPW 171
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 246 SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSI 304
S+L +L +L L L GNQL F LT +N+L S+PD + K+ +L+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTY 137
Query: 305 LDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337
L+L+ NQ + + LTNL EL L YN L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLS 308
KL +L L L NQL F LT N+L S+P + K+ +L+ LDLS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLS 165
Query: 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
NQ + + LT LK+L LY N S+P
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDL-RLYQNQLKSVP 197
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
Query: 74 KLHDFS-FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLM 131
KLHD S +L YL L+ N+L LTNL L NQ ++P V +
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132
Query: 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS 191
++L +L + N L +L+++ EL L N L LT L L L N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 192 FSGFIPPDIGNSKSMSVLYLSSNKFSGPIP 221
S+ ++L N + P
Sbjct: 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 121/271 (44%), Gaps = 28/271 (10%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
N I P ++NLTNL L NQ + +I P L ++L L + +N + S L
Sbjct: 94 NNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNL-TNLNRLELSSNTI--SDISALS 148
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF-IPPDIGNSKSMSVLYLS 212
L+S+ +LS SN + P L+NLT L L + N S + + N +S L +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLES---LIAT 203
Query: 213 SNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNL---QLKGNQLTGYIP 269
+N+ S P ++G+ +G L SL NL L NQ++ P
Sbjct: 204 NNQISDITPLGILTNLDELS-------LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 270 SSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKEL 329
LT N++ P + + +L+ L+L++NQ + + P +SNL NL L
Sbjct: 257 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 330 VLLYNNLSGSIPPLLENPMLTQLSLDNNHFT 360
L +NN+S I P+ L +L NN +
Sbjct: 311 TLYFNNIS-DISPVSSLTKLQRLFFSNNKVS 340
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 113/252 (44%), Gaps = 27/252 (10%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
N I P ++NLTNL L NQ + +I P L ++L L + +N + S L
Sbjct: 94 NNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNL-TNLNRLELSSNTI--SDISALS 148
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF-IPPDIGNSKSMSVLYLS 212
L+S+ +LS SN + P L+NLT L L + N S + + N +S L +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLES---LIAT 203
Query: 213 SNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNL---QLKGNQLTGYIP 269
+N+ S P ++G+ +G L SL NL L NQ++ P
Sbjct: 204 NNQISDITPLGILTNLDELS-------LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 270 SSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKEL 329
LT N++ P + + +L+ L+L++NQ + + P +SNL NL L
Sbjct: 257 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 310
Query: 330 VLLYNNLSGSIP 341
L +NN+S P
Sbjct: 311 TLYFNNISDISP 322
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 248 LGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDL 307
G+L L L+LK NQLTG P++F + +NK+ + L L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 308 SQNQFKGVLPPSVSNLTNLKELVLLYN 334
NQ V+P S +L +L L L N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%)
Query: 129 GLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188
G + HL+ L + N L G P S I EL L N + L L L L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 189 DNSFSGFIPPDIGNSKSMSVLYLSSNKF 216
DN S +P + S++ L L+SN F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 77 DFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSH-LM 135
D F PHL L+L N+L G P +++ L G N+ I ++ L H L
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLK 105
Query: 136 FLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLN 169
L + N + +P L+S+ L+L SN N
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 126/323 (39%), Gaps = 49/323 (15%)
Query: 39 TNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFG 98
TNV+ S ++ A R L K + G +L ++ S N+L
Sbjct: 29 TNVTDTVSQTDLDQVTTLQADR-----LGIKSIDG------VEYLNNLTQINFSNNQLTD 77
Query: 99 TIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSI 158
P + NLT L+ + NQ +I P L ++L L + N + P L L+++
Sbjct: 78 ITP--LKNLTKLVDILMNNNQI-ADITPLANL-TNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 159 VELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218
L L SN + S +LS LT L L N + P + N ++ L +SSNK S
Sbjct: 132 NRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD 187
Query: 219 PIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGX 278
+S P LG L +L L L GNQL + +LT
Sbjct: 188 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL 241
Query: 279 XXXXXXQNKLFGSIP--------------------DEIGKMRSLSILDLSQNQFKGVLPP 318
N++ P + + +L+ L+L++NQ + + P
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP- 300
Query: 319 SVSNLTNLKELVLLYNNLSGSIP 341
+SNL NL L L +NN+S P
Sbjct: 301 -ISNLKNLTYLTLYFNNISDISP 322
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 251 LKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQN 310
L L NL L GN + + P SF LT + KL IG++ +L L+++ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 311 QFKGV-LPPSVSNLTNLKELVLLYNNLS----GSIPPLLENPMLTQLSLD 355
LP SNLTNL + L YN + + L ENP + LSLD
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-NLSLD 182
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 251 LKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQN 310
L L NL L GN + + P SF LT + KL IG++ +L L+++ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 311 QFKGV-LPPSVSNLTNLKELVLLYNNLS----GSIPPLLENPMLTQLSLD 355
LP SNLTNL + L YN + + L ENP + LSLD
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-NLSLD 187
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 26/251 (10%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
N I P ++NLTNL L NQ + +I P L ++L L + +N + S L
Sbjct: 99 NNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNL-TNLNRLELSSNTI--SDISALS 153
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSS 213
L+S+ +LS F N + P L+NLT L L + N S + ++ L ++
Sbjct: 154 GLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208
Query: 214 NKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNL---QLKGNQLTGYIPS 270
N+ S P ++G+ +G L SL NL L NQ++ P
Sbjct: 209 NQISDITPLGILTNLDELS-------LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP- 260
Query: 271 SFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELV 330
LT N++ P + + +L+ L+L++NQ + + P +SNL NL L
Sbjct: 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315
Query: 331 LLYNNLSGSIP 341
L +NN+S P
Sbjct: 316 LYFNNISDISP 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 26/251 (10%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
N I P ++NLTNL L NQ + +I P L ++L L + +N + S L
Sbjct: 98 NNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNL-TNLNRLELSSNTI--SDISALS 152
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSS 213
L+S+ +LS F N + P L+NLT L L + N S + ++ L ++
Sbjct: 153 GLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 207
Query: 214 NKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNL---QLKGNQLTGYIPS 270
N+ S P ++G+ +G L SL NL L NQ++ P
Sbjct: 208 NQISDITPLGILTNLDELS-------LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP- 259
Query: 271 SFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELV 330
LT N++ P + + +L+ L+L++NQ + + P +SNL NL L
Sbjct: 260 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 314
Query: 331 LLYNNLSGSIP 341
L +NN+S P
Sbjct: 315 LYFNNISDISP 325
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 69/180 (38%), Gaps = 28/180 (15%)
Query: 160 ELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG- 218
+L L SN L+ + LT L +L+L DN K++ L+++ NK
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 219 PIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGX 278
PI +L +L L+L NQL P F +LT
Sbjct: 101 PI-------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 279 XXXXXXQNKLFGSIPDEI-GKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337
N+L S+P + K+ SL L L NQ K V + LT LK L L N L
Sbjct: 136 TYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 74 KLHDFSFSLFPHLAYLD---LSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-G 129
KL +F L L+ ++ NKL L NL L NQ ++PP V
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD 130
Query: 130 LMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQD 189
++ L +L + N L +L+S+ EL L++N L + LT+L L L +
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 190 NSFSGFIPPDIGNSKSMSVLYLSSN 214
N + + + +L L N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 89 LDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHLMFLYIDTNHLDGS 147
LDL NKL LT L LY N+ +P + + +L L++ N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 148 IPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF 195
QL ++ EL L N L P +LT L L L N
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 80 FSLFPHLAYLDLSYNKLFG-TIPPQISNLTNLIHLYFGGNQFSG-NIPPEVGLMSHLMFL 137
F L YLDLS+NKL + P + NL HL N F I E G MS L FL
Sbjct: 65 FKFNQELEYLDLSHNKLVKISCHPTV----NLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 138 YIDTNHLDGS 147
+ T HL+ S
Sbjct: 121 GLSTTHLEKS 130
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 252 KSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQ 311
KSL +L + N LT I FR L + SIP ++ K+ +L L+++ NQ
Sbjct: 399 KSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455
Query: 312 FKGVLPPSVSNLTNLKELVLLYNNLSGSIPPL 343
K V LT+L+++ L N S P +
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN 118
GR+ + L GL+ +L F L YL L N L +L NL HL+ GN
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 119 QFSGNIPPEV--GLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSL 176
+ S ++P GL S L L + N + P L ++ L LF+N+L+ +L
Sbjct: 164 RIS-SVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Query: 177 SNLTDLFILFLQDNSF 192
+ L L L L DN +
Sbjct: 222 APLRALQYLRLNDNPW 237
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 245 PSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGK-MRSLS 303
P L +L L L+ N L +FR+L N++ S+P+ + + SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLD 180
Query: 304 ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSG 338
L L QN+ V P + +L L L L NNLS
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 289 FGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPP 342
F +P E+ + L+++DLS N+ + S SN+T L L+L YN L IPP
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 129 GLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188
G+ + LY+D N +P EL + + L +N ++ S SN+T L L L
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 189 DNSFSGFIPPDIGNSKSMSVLYLSSNKFS 217
N P KS+ +L L N S
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
NK +P I ++ LY GNQF+ +P E+ HL + + N +
Sbjct: 19 NKGLKVLPKGIPR--DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFS 193
++ ++ L L N L P + L L +L L N S
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 83 FPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV--GLMSHLMFLYID 140
+ HL +DLS N++ SN+T L+ L N+ IPP GL S L L +
Sbjct: 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS-LRLLSLH 110
Query: 141 TNHLDGSIPPE--LGQLSSIVELSLFSNHL 168
N D S+ PE LS++ L++ +N L
Sbjct: 111 GN--DISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 181 DLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXV 240
D+ L+L N F+ +P ++ N K ++++ LS+N+ S +
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 241 SGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLF 289
P + LKSL L L GN ++ +F +L+ N L+
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%)
Query: 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLS 303
+P L K L + L N+++ SF N+T N+L P ++SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 304 ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
+L L N V + ++L+ L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN 118
GR+ + L GL+ +L F L YL L N L +L NL HL+ GN
Sbjct: 104 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 119 QFSGNIPPEV--GLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSL 176
+ S ++P GL S L L + N + P L ++ L LF+N+L+ +L
Sbjct: 163 RIS-SVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 220
Query: 177 SNLTDLFILFLQDNSF 192
+ L L L L DN +
Sbjct: 221 APLRALQYLRLNDNPW 236
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 245 PSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGK-MRSLS 303
P L +L L L+ N L +FR+L N++ S+P+ + + SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLD 179
Query: 304 ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSG 338
L L QN+ V P + +L L L L NNLS
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 55/275 (20%)
Query: 107 LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166
L NL + F NQ + P + ++ L+ + ++ N + P L L+++ L+LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 167 HLNGSVPPSLSNLTDLFILFLQDNSFSGF--------------------IPPDIGNSKSM 206
+ P L NLT+L L L N+ S + P + N ++
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP-LANLTTL 174
Query: 207 SVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTG 266
L +SSNK S +S P LG L +L L L GNQL
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 230
Query: 267 YIPSSFRNLTGXXXXXXXQNKLFGSIP--------------------DEIGKMRSLSILD 306
+ +LT N++ P + + +L+ L+
Sbjct: 231 I--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 288
Query: 307 LSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
L++NQ + + P +SNL NL L L +NN+S P
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 55/275 (20%)
Query: 107 LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166
L NL + F NQ + P + ++ L+ + ++ N + I P L L+++ L+LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNN 117
Query: 167 HLNGSVPPSLSNLTDLFILFLQDNSFSGF--------------------IPPDIGNSKSM 206
+ P L NLT+L L L N+ S + P + N ++
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP-LANLTTL 174
Query: 207 SVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTG 266
L +SSNK S +S P LG L +L L L GNQL
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 230
Query: 267 YIPSSFRNLTGXXXXXXXQNKLFGSIP--------------------DEIGKMRSLSILD 306
+ +LT N++ P + + +L+ L+
Sbjct: 231 I--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 288
Query: 307 LSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
L++NQ + + P +SNL NL L L +NN+S P
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 251 LKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQN 310
L +L L+LK NQ+T P +NLT N L I ++S+ LDL+
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 311 QFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLP 364
Q V P ++ L+NL+ L L N ++ +I PL L LS+ NN P
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNNQVNDLTP 174
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHL 144
+ YLDL N++ P ++ LTNL +L G NQ + P + +S L L D N +
Sbjct: 138 QVLYLDL--NQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191
Query: 145 DGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFL 187
P L L +++E+ L N ++ P L+NL++LFI+ L
Sbjct: 192 SDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTL 230
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 2/138 (1%)
Query: 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHLMFLYIDTNH 143
YLDL N L LT+L LY GGN+ ++P V ++ L +L + TN
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS 203
L +L+ + EL+L +N L LT L L L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 204 KSMSVLYLSSNKFSGPIP 221
S+ ++L N + P
Sbjct: 148 TSLQYIWLHDNPWDCTCP 165
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLS 308
KL SL L L NQL F LT N+L S+PD + K+ L L L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLY 132
Query: 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
QNQ K V LT+L+ + L N + P
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLS 308
+L SL L L GN+L F LT N+L S+P+ + K+ L L L+
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALN 108
Query: 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
NQ + + LT LK+L L N L S+P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 257 LQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLSQNQFKGV 315
L L+ N L F LT NKL S+P+ + K+ SL+ L+LS NQ + +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 316 LPPSVSNLTNLKELVLLYNNL 336
LT LKEL L N L
Sbjct: 92 PNGVFDKLTQLKELALNTNQL 112
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 246 SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSI 304
S+L +L +L L L GNQL F LT +N+L S+PD + K+ +L+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTY 137
Query: 305 LDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPM--LTQLSLDNNHF 359
L L NQ + + LTNL L L N L S+P + + + L QLSL++N
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 74 KLHDFS-FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLM 131
KLHD S +L YL L+ N+L LTNL L NQ +P V +
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKL 132
Query: 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS 191
++L +LY+ N L +L+++ L L +N L LT L L L DN
Sbjct: 133 TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 192 F 192
Sbjct: 193 L 193
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLS 308
KL +L L L NQL F LT N+L S+P + K+ +L+ LDL
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLD 165
Query: 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
NQ + + LT LK+L L N L S+P
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVP 197
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQF 120
+ + L + GL L D +F L +L+L YN+L +LT L L NQ
Sbjct: 37 TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 121 SGNIPPEVGLMSHLM---FLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLS 177
+ ++P +G+ HL LY+ N L +L+ + EL L +N L +
Sbjct: 96 A-SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 178 NLTDLFILFLQDNSF 192
LT+L L L N
Sbjct: 153 KLTNLQTLSLSTNQL 167
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 58 AGRVDNIT-LPAKGLKG-KLHDFSFSLFPHLAYLDLSY---NKLFGTIPPQISNLTNLIH 112
AG D++T L GL +L +F HL LD Y N+L LT L
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 113 LYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIP----PELGQLSSIVELSLFSNHL 168
L NQ +++L L + TN L S+P LG+L +I +LF N
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI---TLFGNQF 191
Query: 169 NGS 171
+ S
Sbjct: 192 DCS 194
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQF 120
+ + L + GL L D +F L +L+L YN+L +LT L L NQ
Sbjct: 37 TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 121 SGNIPPEVGLMSHLM---FLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLS 177
+ ++P +G+ HL LY+ N L +L+ + EL L +N L +
Sbjct: 96 A-SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 178 NLTDLFILFLQDNSF 192
LT+L L L N
Sbjct: 153 KLTNLQTLSLSTNQL 167
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 58 AGRVDNIT-LPAKGLKG-KLHDFSFSLFPHLAYLDLSY---NKLFGTIPPQISNLTNLIH 112
AG D++T L GL +L +F HL LD Y N+L LT L
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 113 LYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIP----PELGQLSSIVELSLFSNHL 168
L NQ +++L L + TN L S+P LG+L +I +LF N
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI---TLFGNQF 191
Query: 169 NGSVPPSL 176
+ S +L
Sbjct: 192 DCSRCETL 199
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 251 LKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQN 310
L +L L+LK NQ+T P +NLT N L I ++S+ LDL+
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 311 QFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLP 364
Q V P ++ L+NL+ L L N ++ +I PL L LS+ N + P
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP 168
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 252 KSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQ 311
+S+ L L N LTG S FR L N SIP ++ +++L L+++ NQ
Sbjct: 428 ESILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484
Query: 312 FKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
K V LT+L+ + L N + P
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 19 WKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDF 78
+K +L N S L +T +VS + Y +C A + + L + L G +
Sbjct: 393 FKVALMTKNMSSL-----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR- 446
Query: 79 SFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHLMFL 137
L P + LDL N++ +IP +++L L L NQ +P V ++ L ++
Sbjct: 447 --CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502
Query: 138 YIDTNHLDGSIP 149
++ N D + P
Sbjct: 503 WLHDNPWDCTCP 514
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 79 SFSLF---PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHL 134
FS+F +L YLD+S+ + L++L L GN F N P++ + +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 135 MFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSL-SNLTDLFILFLQDNSFS 193
FL + L+ P LSS+ L++ SN L SVP + LT L ++L N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 194 GFIP 197
P
Sbjct: 532 CSCP 535
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 292 IPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
+PD ++R+L+ LDLSQ Q + + P + ++L++L+ L + N L S+P
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 35 VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN 94
V+ N++ + +Y I N N+ L L+ L +SF FP L LDLS
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
++ +L++L L GN S + GL S + ++TN P +G
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 121
Query: 154 QLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 292 IPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
+PD ++R+L+ LDLSQ Q + + P + ++L++L+ L + +NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 80 FSLF---PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHLM 135
FS+F +L YLD+S+ + L++L L GN F N P++ + +L
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178
Query: 136 FLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166
FL + L+ P LSS+ L++ N
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 42/277 (15%)
Query: 83 FPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN 142
+L YL+L+ N++ P +SNL L +LY G N+ + + +++L LY++ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 143 HLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGN 202
++ I P L L+ L+L +NH + P LSN T L L + ++ P I N
Sbjct: 121 NI-SDISP-LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 203 SKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGN 262
+ L L+ N+ P L L SL N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--------------------------LASLTSLHYFTAYVN 209
Query: 263 QLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSN 322
Q+T P N T NK+ P + + L+ L++ NQ + +V +
Sbjct: 210 QITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263
Query: 323 LTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHF 359
LT LK L + N +S I L L L L+NN
Sbjct: 264 LTKLKXLNVGSNQIS-DISVLNNLSQLNSLFLNNNQL 299
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 29 SLLSSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAY 88
++ S VKD T +++ T Y +S N ++++I+ P L LH F+ AY
Sbjct: 161 TVTESKVKDVTPIANLTD---LYSLSLN-YNQIEDIS-PLASLTS-LHYFT-------AY 207
Query: 89 LDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSI 148
+ N++ P ++N T L L G N+ + P + +S L +L I TN + S
Sbjct: 208 V----NQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SD 257
Query: 149 PPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSV 208
+ L+ + L++ SN + S L+NL+ L LFL +N IG +++
Sbjct: 258 INAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 209 LYLSSNKFSGPIP 221
L+LS N + P
Sbjct: 316 LFLSQNHITDIRP 328
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GK 298
V IPSS +L +L+ N+L F LT QN++ S+PD + K
Sbjct: 22 VPTGIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK 74
Query: 299 MRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
+ L+IL L +N+ + + LT LKEL L N L S+P
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVP 116
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 21/153 (13%)
Query: 48 CAWYGISCNDAGRVDNIT-LPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISN 106
C+ I CN G T +P+ + +L PH +
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF----------------DK 50
Query: 107 LTNLIHLYFGGNQFSGNIPPEV-GLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFS 165
LT L L NQ ++P V ++ L LY+ N L +L+ + EL+L +
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 166 NHLNGSVPPSL-SNLTDLFILFLQDNSFSGFIP 197
N L SVP + LT L ++L N + P
Sbjct: 110 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEI-GKMRSLSILDLS 308
KL L L L NQ+ F LT +NKL S+P+ + K+ L L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALD 108
Query: 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
NQ K V LT+L+++ L N S P
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 292 IPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
+PD ++R+L+ LDLSQ Q + + P + ++L++L+ L + +NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 7/179 (3%)
Query: 27 NRSLLSSW---VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLF 83
N S+ SW V+ N++ + +Y I N N+ L L+ L +SF F
Sbjct: 17 NSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSF 75
Query: 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTN 142
P L LDLS ++ +L++L L GN S + GL S + ++TN
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 143 HLDGSIPPELGQLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
P +G L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 136 LASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 292 IPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336
+PD ++R+L+ LDLSQ Q + + P + ++L++L+ L + +NN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 35 VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN 94
V+ N++ + +Y I N N+ L L+ L +SF FP L LDLS
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
++ +L++L L GN S + GL S + ++TN P +G
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 121
Query: 154 QLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 90 DLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIP 149
DLS +K+F + S+ T+L L N+ + ++HL L +DTN L S+P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVP 339
Query: 150 PEL-GQLSSIVELSLFSNHLNGSVP 173
+ +L+S+ ++ L +N + S P
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 242 GSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRS 301
S+P+ + K L L NQ+T P F +L NKL K+
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 302 LSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNN 335
L+ LDL+ N K + + NL +L + LYNN
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTH-IYLYNN 115
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 94 NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
N ++P I T+ L+ NQ + P + +L LY ++N L
Sbjct: 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF 192
+L+ + +L L NHL + NL L ++L +N +
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 91 LSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV-GLMSHLMFLYIDTNHLDGSIP 149
L+ N++ P +L NL LYF N+ + IP V ++ L L ++ NHL SIP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHL-KSIP 97
Query: 150 P-ELGQLSSIVELSLFSN 166
L S+ + L++N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEV--GLMSHLMFLYIDTNH 143
L YL L N L +L NL HL+ GN+ ++P GL S L L + NH
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHS-LDRLLLHQNH 187
Query: 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF 192
+ P L ++ L LF+N+L+ L L L L L DN +
Sbjct: 188 VARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPW 236
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 245 PSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGK-MRSLS 303
P L +L L L+ N L ++FR+L N++ S+P+ + + SL
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRGLHSLD 179
Query: 304 ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337
L L QN V P + +L L L L NNLS
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 84 PHLAYLDLSYNKLFGTIPPQI-SNLTNLIHLYFGGNQFSGNIPPEVGL-----MSHLMFL 137
PHL L L+ N+ Q S +L L+ G N E+ +SHL L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 138 YIDTNHLDGSIPPELGQLSSIVELSLFSNHL----NGSVPPSLSNLTDLFILFLQDNSFS 193
Y++ N+L+ P L+++ LSL SN L + +P +L L D S +
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL---------DISRN 536
Query: 194 GFIPPDIGNSKSMSVLYLSSNKF 216
+ P+ S+SVL ++ NKF
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKF 559
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGK-MRSL 302
+ S L L L N++ ++F LT QN GSI + + + L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKL 349
Query: 303 SILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341
+LDLS N + + S L NLKEL L N L S+P
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP 387
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 90 DLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIP 149
DLS +K+F + S+ T+L L N+ + ++HL+ L + N L GSI
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 150 PELGQ-LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS-KSMS 207
+ + L + L L NH+ S L +L L L N +P I + S+
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQ 398
Query: 208 VLYLSSNKFSGPIP 221
++L +N + P
Sbjct: 399 KIWLHTNPWDCSCP 412
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143
P LDL N + L +L L N+ S + L LYI NH
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF--SGFIPPDIG 201
L IPP L SS+VEL + N + S L ++ + + N SGF P
Sbjct: 114 L-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 202 NSKSMSVLYLSSNKFSG 218
K ++ L +S K +G
Sbjct: 171 GLK-LNYLRISEAKLTG 186
>pdb|3EUP|A Chain A, The Crystal Structure Of The Transcriptional Regulator,
Tetr Family From Cytophaga Hutchinsonii
pdb|3EUP|B Chain B, The Crystal Structure Of The Transcriptional Regulator,
Tetr Family From Cytophaga Hutchinsonii
Length = 204
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 254 LFNLQ-LKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQF 312
+FN++ L G LT ++ NLT +NK + +++ D +
Sbjct: 23 VFNVKGLAGTSLTDLTEAT--NLTKGSIYGNFENK----------EAVAIAAFDYNWGHV 70
Query: 313 KGVLPPSVSNLTNLKELVL----LYNNLSGSIPPLLENPML-TQLSLDNNH 358
K VL V KE++L +YN+ GS+ P+ P+L T + D+ H
Sbjct: 71 KSVLTAKVQACNTYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTH 121
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 32 SSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDL 91
S V+ N++ + +Y I N N+ L L+ L +SF FP L LDL
Sbjct: 2 SPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDL 60
Query: 92 SYNKLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPP 150
S ++ +L++L L GN S + GL S + ++TN P
Sbjct: 61 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 120
Query: 151 ELGQLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
+G L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 121 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQ 154
K ++P I T +++LY NQ + P ++ L L +D N L +
Sbjct: 27 KSLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 84
Query: 155 LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLS 212
L+ + +LSL N L + NL L ++L +N P D S +LYLS
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN------PWDCACSD---ILYLS 133
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%)
Query: 257 LQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVL 316
L L NQ+T P F LT N+L K+ L+ L L+ NQ K +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 317 PPSVSNLTNLKELVLLYN 334
+ NL +L + LL N
Sbjct: 103 RGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQ 154
K ++P I T +++LY NQ + P ++ L L +D N L +
Sbjct: 19 KSLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 155 LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLS 212
L+ + +LSL N L + NL L ++L +N P D S +LYLS
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN------PWDCACSD---ILYLS 125
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%)
Query: 257 LQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVL 316
L L NQ+T P F LT N+L K+ L+ L L+ NQ K +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 317 PPSVSNLTNLKELVLLYN 334
+ NL +L + LL N
Sbjct: 95 RGAFDNLKSLTHIWLLNN 112
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 32 SSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDL 91
S V+ N++ + +Y I N N+ L L+ L +SF FP L LDL
Sbjct: 2 SPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLR-HLGSYSFFSFPELQVLDL 60
Query: 92 SYNKLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPP 150
S ++ +L++L L GN S + GL S + ++TN P
Sbjct: 61 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 120
Query: 151 ELGQLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
+G L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 121 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 35 VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN 94
V+ N++ + +Y I N N+ L L+ L +SF FP L LDLS
Sbjct: 6 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLR-HLGSYSFFSFPELQVLDLSRC 64
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
++ +L++L L GN S + GL S + ++TN P +G
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 123
Query: 154 QLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 72 KGKLHDFSFSLFPHLAYLDLSYNKL----FGTIPPQISNLTNLI----HLYFGGNQFSGN 123
K +L + SL + A LDLS+N L P +++NL +L+ HL F ++
Sbjct: 27 KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86
Query: 124 IPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLF 183
+P +L +L + +NHL L ++ L L++NH+ + ++ L
Sbjct: 87 VP-------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 184 ILFLQDNSFSGF---IPPDIGNSKSMSVLYLSSNKF 216
L+L N S F + D + +L LSSNK
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 35 VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN 94
V+ N++ + +Y I N N+ L L+ L +SF FP L LDLS
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
++ +L++L L GN S + GL S + ++TN P +G
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IG 121
Query: 154 QLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 244 IPSSL-GKLKSLFNLQLKGNQLTGYIPSS-FRNLTGXXXXXXXQNKLFGSIPDEIGKMRS 301
IP++L +++L +L+L+ N +PS F +L NKL GKM
Sbjct: 138 IPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPK 195
Query: 302 LSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPL 343
L L+L+ NQ K V LT+L+++ L N S P +
Sbjct: 196 LKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 237
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 69/191 (36%), Gaps = 23/191 (12%)
Query: 131 MSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN 190
+ HL L + N + L S+ L LF N L + L+ L L+L++N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 191 SFSGF-------IPP----DIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXX 239
+P D+G K + Y+S F G +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLVNLRYLNLGMCNL------- 168
Query: 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKM 299
IP+ L L L L+L GN+L P SF+ LT ++ + +
Sbjct: 169 --KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 300 RSLSILDLSQN 310
+SL L+LS N
Sbjct: 226 KSLEELNLSHN 236
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 110/323 (34%), Gaps = 71/323 (21%)
Query: 48 CAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNL 107
C + C+D G L L P A LDL NK+ NL
Sbjct: 31 CHLRVVQCSDLG---------------LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL 75
Query: 108 TNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNH 167
NL L N+ S P + L LY+ N L +P ++ + ++ EL + N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENE 132
Query: 168 LNGSVPPSLSNLTDLFILFLQDNSF--SGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXX 225
+ + L + ++ L N SG K +S + ++ +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------- 184
Query: 226 XXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQ 285
+IP L SL L L GN++T +S + L
Sbjct: 185 -----------------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN--------- 216
Query: 286 NKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLE 345
+L+ L LS N V S++N +L+EL L N L L +
Sbjct: 217 ---------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 346 NPMLTQLSLDNNHFTGYLPHNVC 368
+ + + L NN+ + ++ C
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 110/323 (34%), Gaps = 71/323 (21%)
Query: 48 CAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNL 107
C + C+D G L L P A LDL NK+ NL
Sbjct: 31 CHLRVVQCSDLG---------------LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL 75
Query: 108 TNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNH 167
NL L N+ S P + L LY+ N L +P ++ + ++ EL + N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENE 132
Query: 168 LNGSVPPSLSNLTDLFILFLQDNSF--SGFIPPDIGNSKSMSVLYLSSNKFSGPIPXXXX 225
+ + L + ++ L N SG K +S + ++ +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------- 184
Query: 226 XXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQ 285
+IP L SL L L GN++T +S + L
Sbjct: 185 -----------------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN--------- 216
Query: 286 NKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLE 345
+L+ L LS N V S++N +L+EL L N L L +
Sbjct: 217 ---------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 346 NPMLTQLSLDNNHFTGYLPHNVC 368
+ + + L NN+ + ++ C
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 80 FSLFPHLAYLDLSYNK 95
+FPHLAY+D+ YN+
Sbjct: 116 LQMFPHLAYVDIDYNE 131
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 80 FSLFPHLAYLDLSYNK 95
+FPHLAY+D+ YN+
Sbjct: 115 LQMFPHLAYVDIDYNE 130
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 35 VKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN 94
V+ N++ + +Y I N N+ L L+ L +SF FP L LDLS
Sbjct: 6 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 64
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQF-SGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELG 153
++ +L++L L GN S + GL S + ++TN P +G
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP-IG 123
Query: 154 QLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200
L ++ EL++ N + +P SNLT+L L L N D+
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 95 KLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQ 154
K ++P I T +++LY N+ + P ++ L L +D N L +
Sbjct: 19 KSLASVPTGIPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 155 LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLS 212
L+ + +LSL N L + NL L ++L +N P D S +LYLS
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN------PWDCACSD---ILYLS 125
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 80 FSLFPHLAYLDLSYNK 95
+FPHLAY+D+ YN+
Sbjct: 107 LQMFPHLAYVDIDYNE 122
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 69/193 (35%), Gaps = 23/193 (11%)
Query: 131 MSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN 190
+ HL L + N + L S+ L LF N L + L+ L L+L++N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 191 SFSGF-------IPP----DIGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXX 239
+P D+G K + Y+S F G +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLVNLRYLNLGMCNLK------ 169
Query: 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKM 299
IP+ L L L L+L GN+L P SF+ LT ++ + +
Sbjct: 170 ---DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 300 RSLSILDLSQNQF 312
+SL L+LS N
Sbjct: 226 KSLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 85/233 (36%), Gaps = 25/233 (10%)
Query: 91 LSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPP 150
+ K +P IS T L++L+ NQ + HL L + NH+
Sbjct: 49 ICVRKNLREVPDGISTNTRLLNLH--ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 151 ELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF-------IPP----D 199
L+++ L LF N L + L+ L L+L++N IP D
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 200 IGNSKSMSVLYLSSNKFSGPIPXXXXXXXXXXXXXXXXXXVSGSIPSSLGKLKSLFNLQL 259
+G K +S Y+S F G IP+ L L L L L
Sbjct: 167 LGELKRLS--YISEGAFEG---------LSNLRYLNLAMCNLREIPN-LTPLIKLDELDL 214
Query: 260 KGNQLTGYIPSSFRNLTGXXXXXXXQNKLFGSIPDEIGKMRSLSILDLSQNQF 312
GN L+ P SF+ L Q+++ + ++SL ++L+ N
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl
(Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A
Resolution
Length = 524
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 4 TVSSESNEEADALLKWKAS-LQNHNRSLLSSWVKDTTNVSSKTSPCA 49
TVS N+EA AL+ W S L N N +L++ VS KT+ A
Sbjct: 321 TVSFNDNKEATALVNWSXSGLHNVNNALVAIAAAYNIGVSVKTACAA 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,013,606
Number of Sequences: 62578
Number of extensions: 384823
Number of successful extensions: 1597
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 352
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)