Query 040974
Match_columns 369
No_of_seqs 243 out of 3166
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.6E-43 1.6E-47 357.5 26.9 349 9-368 27-377 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-35 2.5E-40 304.6 21.7 302 59-363 118-444 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.4E-32 5.3E-37 245.0 5.1 319 43-364 47-408 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.3E-32 7.1E-37 244.2 3.7 308 59-367 125-436 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.9E-28 4.1E-33 222.0 -6.6 282 80-368 51-336 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7.1E-28 1.5E-32 218.4 -4.2 291 60-358 79-373 (1255)
7 PLN03210 Resistant to P. syrin 99.9 4.1E-21 8.9E-26 198.4 24.9 264 83-358 610-904 (1153)
8 PLN03210 Resistant to P. syrin 99.9 9E-21 1.9E-25 195.9 23.6 268 86-367 591-889 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 2.3E-24 5.1E-29 186.0 -10.2 115 243-360 426-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 3.2E-24 7E-29 185.2 -12.1 264 61-337 47-310 (565)
11 PRK15387 E3 ubiquitin-protein 99.8 8.5E-20 1.8E-24 176.8 16.4 263 60-367 202-465 (788)
12 KOG4237 Extracellular matrix p 99.8 6.7E-23 1.4E-27 176.7 -5.1 252 60-312 68-358 (498)
13 PRK15370 E3 ubiquitin-protein 99.8 4.5E-19 9.7E-24 172.6 19.3 316 6-360 58-428 (754)
14 KOG4237 Extracellular matrix p 99.8 1.3E-21 2.8E-26 168.8 -3.4 253 84-336 67-358 (498)
15 KOG0618 Serine/threonine phosp 99.8 3.1E-21 6.8E-26 182.4 -3.3 245 85-336 242-488 (1081)
16 cd00116 LRR_RI Leucine-rich re 99.8 5.2E-21 1.1E-25 172.4 -3.5 276 64-359 3-319 (319)
17 cd00116 LRR_RI Leucine-rich re 99.8 8.7E-21 1.9E-25 170.9 -2.1 255 60-335 24-318 (319)
18 KOG0618 Serine/threonine phosp 99.8 6.6E-21 1.4E-25 180.2 -3.4 243 109-358 242-487 (1081)
19 PRK15387 E3 ubiquitin-protein 99.8 1.3E-17 2.7E-22 161.8 18.4 243 60-344 223-465 (788)
20 PRK15370 E3 ubiquitin-protein 99.8 7.6E-18 1.7E-22 164.1 13.7 247 59-337 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 3.5E-18 7.6E-23 131.7 -7.4 180 179-363 32-215 (264)
22 KOG0617 Ras suppressor protein 99.6 2.8E-17 6E-22 126.8 -3.7 154 131-289 32-186 (264)
23 PLN03150 hypothetical protein; 99.5 1.5E-13 3.3E-18 133.4 13.4 155 6-168 367-527 (623)
24 KOG4658 Apoptotic ATPase [Sign 99.3 8.3E-13 1.8E-17 131.2 4.3 298 60-365 524-847 (889)
25 KOG1909 Ran GTPase-activating 99.2 3.7E-13 8.1E-18 115.3 -3.1 232 104-336 26-310 (382)
26 KOG1909 Ran GTPase-activating 99.2 8E-13 1.7E-17 113.3 -2.6 233 80-312 26-310 (382)
27 KOG3207 Beta-tubulin folding c 99.2 1.3E-12 2.7E-17 115.2 -1.7 208 105-313 118-339 (505)
28 COG4886 Leucine-rich repeat (L 99.2 2.7E-11 5.8E-16 112.4 6.9 193 88-289 97-290 (394)
29 KOG3207 Beta-tubulin folding c 99.2 1.7E-12 3.6E-17 114.4 -1.3 209 129-338 118-340 (505)
30 COG4886 Leucine-rich repeat (L 99.2 5.1E-11 1.1E-15 110.6 6.6 193 112-313 97-290 (394)
31 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 104.5 1.6 129 203-337 283-412 (490)
32 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.4E-16 102.3 1.1 222 129-361 179-413 (490)
33 KOG4658 Apoptotic ATPase [Sign 99.1 6.6E-11 1.4E-15 117.8 3.6 178 60-241 546-730 (889)
34 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4.1E-15 92.4 3.9 16 202-217 111-126 (175)
35 KOG0532 Leucine-rich repeat (L 99.0 6.8E-12 1.5E-16 114.1 -5.0 170 111-289 78-247 (722)
36 KOG0532 Leucine-rich repeat (L 99.0 6.8E-12 1.5E-16 114.1 -5.3 195 154-358 73-271 (722)
37 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.7E-15 91.1 4.7 125 155-283 18-147 (175)
38 PLN03150 hypothetical protein; 99.0 8.6E-10 1.9E-14 107.4 8.6 111 254-364 420-532 (623)
39 PF13855 LRR_8: Leucine rich r 98.9 2.4E-09 5.2E-14 70.7 3.6 60 84-143 1-60 (61)
40 KOG0531 Protein phosphatase 1, 98.8 4.3E-10 9.3E-15 104.7 -1.2 244 82-339 70-320 (414)
41 KOG0531 Protein phosphatase 1, 98.8 4.6E-10 1E-14 104.5 -1.0 217 107-337 71-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.8 5.4E-09 1.2E-13 69.0 3.2 59 277-335 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.7 7.2E-11 1.6E-15 99.4 -10.4 203 60-265 160-376 (419)
44 KOG2982 Uncharacterized conser 98.6 8.7E-09 1.9E-13 87.1 -0.0 62 252-313 199-262 (418)
45 KOG2120 SCF ubiquitin ligase, 98.6 3.7E-10 8E-15 95.2 -9.1 180 132-311 185-374 (419)
46 PF08263 LRRNT_2: Leucine rich 98.5 1.5E-07 3.2E-12 57.0 4.1 41 10-56 2-43 (43)
47 KOG1859 Leucine-rich repeat pr 98.5 7.8E-10 1.7E-14 103.7 -9.0 198 131-337 83-292 (1096)
48 KOG4341 F-box protein containi 98.5 1E-09 2.3E-14 96.6 -8.2 279 59-337 138-439 (483)
49 KOG2982 Uncharacterized conser 98.4 5.1E-08 1.1E-12 82.5 0.8 165 178-342 95-267 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 6.4E-08 1.4E-12 80.9 -1.5 245 82-337 28-316 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.3 4.3E-08 9.2E-13 82.0 -2.8 186 175-360 87-316 (388)
52 KOG1859 Leucine-rich repeat pr 98.3 4.9E-09 1.1E-13 98.5 -9.3 179 125-313 102-292 (1096)
53 KOG4579 Leucine-rich repeat (L 98.1 4.9E-08 1.1E-12 73.2 -4.9 134 229-364 28-163 (177)
54 PF13306 LRR_5: Leucine rich r 98.1 9.7E-06 2.1E-10 62.4 6.9 108 76-188 4-111 (129)
55 KOG1644 U2-associated snRNP A' 98.1 8.5E-06 1.8E-10 65.5 5.7 105 108-214 42-150 (233)
56 PRK15386 type III secretion pr 97.9 8.9E-05 1.9E-09 67.4 10.7 52 60-118 53-104 (426)
57 PF13306 LRR_5: Leucine rich r 97.9 4.2E-05 9.2E-10 58.8 7.4 124 101-230 5-128 (129)
58 PRK15386 type III secretion pr 97.8 0.00014 2.9E-09 66.2 10.0 136 80-238 48-187 (426)
59 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 8.9E-10 61.7 5.6 104 157-262 43-150 (233)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.6E-10 47.6 2.9 36 301-337 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 47.4 2.7 35 109-144 2-36 (44)
62 KOG4579 Leucine-rich repeat (L 97.7 9.1E-07 2E-11 66.5 -4.4 106 108-217 27-136 (177)
63 KOG3665 ZYG-1-like serine/thre 97.7 7.2E-06 1.6E-10 80.3 0.1 106 180-287 122-231 (699)
64 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 78.1 1.4 132 108-241 122-263 (699)
65 KOG4341 F-box protein containi 97.5 9.8E-07 2.1E-11 78.2 -7.8 311 46-359 97-438 (483)
66 KOG1947 Leucine rich repeat pr 97.2 9.6E-06 2.1E-10 77.3 -6.2 36 302-337 403-440 (482)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00021 4.5E-09 60.0 2.3 87 80-168 39-128 (260)
68 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.2E-09 60.9 1.3 63 105-169 40-104 (260)
69 KOG1947 Leucine rich repeat pr 97.1 2.4E-05 5.3E-10 74.5 -5.0 34 326-359 403-439 (482)
70 PF00560 LRR_1: Leucine Rich R 97.1 0.00029 6.3E-09 35.5 1.2 21 348-369 1-21 (22)
71 KOG2123 Uncharacterized conser 96.6 6.3E-05 1.4E-09 63.6 -5.4 98 252-353 19-123 (388)
72 KOG2123 Uncharacterized conser 96.1 0.00029 6.2E-09 59.7 -4.2 79 157-239 20-99 (388)
73 PF13504 LRR_7: Leucine rich r 95.1 0.012 2.7E-07 27.3 1.1 17 347-364 1-17 (17)
74 PF00560 LRR_1: Leucine Rich R 94.2 0.018 3.9E-07 28.8 0.4 12 134-145 2-13 (22)
75 KOG4308 LRR-containing protein 93.5 0.00022 4.8E-09 67.0 -13.2 181 158-338 89-304 (478)
76 KOG0473 Leucine-rich repeat pr 91.0 0.0023 5E-08 53.0 -8.3 87 80-169 38-124 (326)
77 KOG4308 LRR-containing protein 90.8 0.0023 5E-08 60.3 -9.8 203 134-336 89-330 (478)
78 KOG3864 Uncharacterized conser 90.7 0.027 5.8E-07 45.8 -2.5 80 86-165 103-185 (221)
79 PF13516 LRR_6: Leucine Rich r 90.2 0.035 7.6E-07 28.4 -1.5 15 348-362 3-17 (24)
80 KOG3864 Uncharacterized conser 88.8 0.052 1.1E-06 44.2 -2.2 33 230-262 103-135 (221)
81 smart00364 LRR_BAC Leucine-ric 88.3 0.31 6.7E-06 25.4 1.2 18 347-365 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 84.5 0.88 1.9E-05 23.5 1.8 13 109-121 3-15 (26)
83 smart00370 LRR Leucine-rich re 84.5 0.88 1.9E-05 23.5 1.8 13 109-121 3-15 (26)
84 KOG0473 Leucine-rich repeat pr 84.3 0.016 3.5E-07 48.2 -7.3 87 104-193 38-124 (326)
85 smart00368 LRR_RI Leucine rich 68.7 3.4 7.4E-05 21.8 1.3 13 348-360 3-15 (28)
86 smart00365 LRR_SD22 Leucine-ri 62.6 6.9 0.00015 20.4 1.7 14 324-337 2-15 (26)
87 KOG3763 mRNA export factor TAP 56.0 6.1 0.00013 37.6 1.3 63 226-289 216-283 (585)
88 smart00367 LRR_CC Leucine-rich 52.0 10 0.00022 19.5 1.3 11 324-334 2-12 (26)
89 KOG3763 mRNA export factor TAP 50.2 7.5 0.00016 37.0 1.0 65 273-339 215-285 (585)
90 KOG4242 Predicted myosin-I-bin 28.9 63 0.0014 30.5 3.3 180 180-362 165-369 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-43 Score=357.52 Aligned_cols=349 Identities=40% Similarity=0.652 Sum_probs=266.1
Q ss_pred CHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCE
Q 040974 9 SNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAY 88 (369)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~ 88 (369)
.+.|+.||++|++.+. ++.....+|. ...++|.|.|+.|...++|+.++++++.+.+.++.. +..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~-------~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWN-------SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA-IFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCC-------CCCCCCcCcceecCCCCcEEEEEecCCCccccCChH-HhCCCCCCE
Confidence 6689999999999985 4555668898 667899999999987789999999999998887665 889999999
Q ss_pred EeCCCCcccccCCcCC-CCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccc
Q 040974 89 LDLSYNKLFGTIPPQI-SNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNH 167 (369)
Q Consensus 89 L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 167 (369)
|++++|.+++.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 9999999987777654 4888899999988888766664 346778888888877777777777777788888888777
Q ss_pred cCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCcc
Q 040974 168 LNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSS 247 (369)
Q Consensus 168 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 247 (369)
+.+..|..+.++++|++|++++|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 77677777777777888877777777666777777777777777777777667777777777777777777776667777
Q ss_pred ccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040974 248 LGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLK 327 (369)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~ 327 (369)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 77777777777777777666666777777777777777777666666666777777777777777666666666677777
Q ss_pred EEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCCCcc
Q 040974 328 ELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNVC 368 (369)
Q Consensus 328 ~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~~ 368 (369)
.|++++|.+.+.+|..+.. ++|+.|++++|++++.+|+++|
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 7777777776666655544 6677777777776666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=304.58 Aligned_cols=302 Identities=36% Similarity=0.556 Sum_probs=144.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.+++++|++.+.+|. ..+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 3566677766666555443 2345555555555555545555555555555555555555445555555555555555
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 55555554445555555555555555555544444444555555555555554444444444444444444444444444
Q ss_pred C------------------------CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhc
Q 040974 219 P------------------------IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRN 274 (369)
Q Consensus 219 ~------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (369)
. .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 4 4444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEE
Q 040974 275 LTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLS 353 (369)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~ 353 (369)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +.|+.|+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 444444444444444333333333333333333333333333333344444444444444444444433322 3333344
Q ss_pred ccCCeecccC
Q 040974 354 LDNNHFTGYL 363 (369)
Q Consensus 354 l~~n~~~~~i 363 (369)
+++|++++.+
T Consensus 435 Ls~N~l~~~~ 444 (968)
T PLN00113 435 ISNNNLQGRI 444 (968)
T ss_pred CcCCcccCcc
Confidence 4433333333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-32 Score=245.03 Aligned_cols=319 Identities=24% Similarity=0.270 Sum_probs=200.7
Q ss_pred CCCCCccccceeeCCC---------------CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCC
Q 040974 43 SKTSPCAWYGISCNDA---------------GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNL 107 (369)
Q Consensus 43 ~~~~~c~~~~~~~~~~---------------~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l 107 (369)
++..+|+-.-..|++. ...+.+++++|.+..--... |.++++|+++++..|.++ .+|...+..
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHH-HhcCCcceeeeeccchhh-hcccccccc
Confidence 3455566666667531 25678999999887544443 788899999999988887 667666666
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEc
Q 040974 108 TNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFL 187 (369)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 187 (369)
.+|+.|+|.+|.|.+.-.+.+..++.|+.|||+.|.++..-..+|..-.++++|++++|.++....+.|.++.+|..|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 67888888877777665666666677777777777666444445555566777777777666555566666666666666
Q ss_pred cCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccC------------------------CCCcceeeccccccccc
Q 040974 188 QDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGN------------------------LSNLNSLHLYGNSVSGS 243 (369)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~~~ 243 (369)
+.|+++......|+++++|+.|+|..|.+.-.-..+|.+ +.++++|+++.|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 666666555555666666666666666554222333444 44555555555555444
Q ss_pred cCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNL 323 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 323 (369)
-..++.+++.|+.|++++|.+....++.+...++|+.|+|++|.+....+..|..+..|++|++++|.+...-...|..+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 44445555555555555555555555555555566666666666555555555556666666666666554444456667
Q ss_pred CCCCEEEccCCcccccCCccC---cC-CCCCEEEccCCeecccCC
Q 040974 324 TNLKELVLLYNNLSGSIPPLL---EN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 324 ~~L~~L~l~~n~~~~~~~~~~---~~-~~L~~L~l~~n~~~~~ip 364 (369)
++|+.|||+.|.+...+.+.. .. ++|+.|.+.||++. .||
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~ 408 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP 408 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence 777777777777765444322 22 77778888888776 555
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-32 Score=244.20 Aligned_cols=308 Identities=22% Similarity=0.232 Sum_probs=230.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
++++.++|..|.+.. +....++.++.|++|||+.|.++.+-...|..=.++++|+|++|.|+..-...|..+.+|..|.
T Consensus 125 ghl~~L~L~~N~I~s-v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISS-VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeecccccc-ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 356666666665542 2222356666677777777766655555555556677777777777655566666777777777
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
|++|.++..-+..|..+++|+.|++..|++.....-.|.++++|+.|.+..|.+......+|..+.++++|+|..|++..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 77777775555566667777777777777764445566777777777777777776666777788888899999888887
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
....++.++..|+.|++++|.+....+..+...++|+.|+|++|.++...+..|..+..|+.|.|++|.+.......|..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 77778888899999999999988788888888899999999999998888888888899999999999888666677888
Q ss_pred CCCCCEEEccCCcCccc---CCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCCCc
Q 040974 299 MRSLSILDLSQNQFKGV---LPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
+++|+.||+++|.+... ....+..++.|++|++.||++.......|.. +.|+.|+|.+|.+-.--|+-|
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 89999999999887533 3345677889999999999887444445555 889999999998865555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.9e-28 Score=222.02 Aligned_cols=282 Identities=28% Similarity=0.433 Sum_probs=163.8
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCc-ccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCC
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFS-GNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSI 158 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 158 (369)
+..+.+|++|.+.+|++. .+-+.++.++.||.+.+.+|++. .-+|..+.++.-|..|||++|++. ..|..+...+++
T Consensus 51 L~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNS 128 (1255)
T ss_pred HHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCc
Confidence 444555555555555554 33344555666666666666553 235666667777777777777776 667777777777
Q ss_pred cEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccc
Q 040974 159 VELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGN 238 (369)
Q Consensus 159 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
-.|++++|++..+....+.++..|-+|++++|++. .+|..+..+..|++|.+++|.+.-.....+..++.|+.|.+++.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 77777777776444444566777777777777665 45555666667777777777654211122334445555555554
Q ss_pred ccc-cccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCC
Q 040974 239 SVS-GSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLP 317 (369)
Q Consensus 239 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 317 (369)
+-+ ..+|.++..+.+|..++++.|.+. ..|..+..+++|+.|++++|.+.. .........+|++|++++|+++ .+|
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cch
Confidence 322 234555555666666666666665 555566666666666666666652 2223344456666666666665 556
Q ss_pred ccccCCCCCCEEEccCCccc-ccCCccCcC-CCCCEEEccCCeecccCCCCcc
Q 040974 318 PSVSNLTNLKELVLLYNNLS-GSIPPLLEN-PMLTQLSLDNNHFTGYLPHNVC 368 (369)
Q Consensus 318 ~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~~ 368 (369)
..+..+++|+.|++.+|++. .-+|..+.. ..|+++...+|++. -+|+.+|
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhh
Confidence 66666666666666666554 234444433 44555555555443 4455554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=7.1e-28 Score=218.35 Aligned_cols=291 Identities=28% Similarity=0.413 Sum_probs=222.3
Q ss_pred CEEEEEcCCCCCccc-cCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 60 RVDNITLPAKGLKGK-LHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
+++.+.+..|++... +|.. +-++..|++|+|++|++. ..|..+...+++-+|+|++|+|.++.-..|-++.-|-+||
T Consensus 79 ~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 455555555555433 4444 667777788888888777 6677777777777888888877733333445667777788
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccc-ccCCcCCcCCCCCcEEEccCCcCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFS-GFIPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
|++|.+. .+|+.+..+.+|++|.+++|++....-..+..+++|+.|.+++++-+ ..+|.++..+.+|..+|++.|++.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 8887776 66777777788888888887765443344555566777777766533 347778888889999999999887
Q ss_pred CCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc-ccCCccc
Q 040974 218 GPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF-GSIPDEI 296 (369)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~ 296 (369)
..|+.+..+++|+.|++++|.++ ..........+|++|++++|+++ ..|..+..++.|+.|.+.+|.+. +-+|..+
T Consensus 236 -~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 78888888999999999999987 33334566788999999999998 78888888999999999888775 3467778
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCe
Q 040974 297 GKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNH 358 (369)
Q Consensus 297 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~ 358 (369)
+.+..|+.+..++|.+. ..|..+..|+.|+.|.|+.|.+. .+|..+-. +.|+.|++..|+
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 88899999999999887 78899999999999999999887 67777766 889999999994
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.1e-21 Score=198.37 Aligned_cols=264 Identities=22% Similarity=0.225 Sum_probs=146.2
Q ss_pred CCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 040974 83 FPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 83 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 162 (369)
..+|++|++.++++. .++..+..+++|++|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345555666555554 3444445555666666655443323442 45555666666655554445555555556666666
Q ss_pred eeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCccc-------------------
Q 040974 163 LFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLS------------------- 223 (369)
Q Consensus 163 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------------- 223 (369)
+++|.....+|..+ ++++|++|++++|.....++.. ..+|++|+++++.+. .+|..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 66554333344333 4555555555555332222221 234555555555433 12211
Q ss_pred -----------ccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccC
Q 040974 224 -----------FGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSI 292 (369)
Q Consensus 224 -----------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 292 (369)
....++|+.|++++|.....+|..+.++++|+.|++++|...+..|..+ .+++|+.|++++|......
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 1112456666666665544556666666677777776664333444433 4566677777666543333
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCe
Q 040974 293 PDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNH 358 (369)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~ 358 (369)
|. ...+|+.|++++|.+. .+|..+..+++|+.|++++|+-...+|..+.. ++|+.+++++|.
T Consensus 842 p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 32 2356777777777776 56667777888888888886555556655544 778888888884
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9e-21 Score=195.88 Aligned_cols=268 Identities=24% Similarity=0.251 Sum_probs=156.0
Q ss_pred CCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeec
Q 040974 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFS 165 (369)
Q Consensus 86 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 165 (369)
|+.|.+.++.++ .+|..| ...+|+.|++.++.+. .++..+..+++|++|+++++.....+| .+..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 444444444443 334444 3456666777666665 456666667777777777665433444 356667777777777
Q ss_pred cccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccC
Q 040974 166 NHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIP 245 (369)
Q Consensus 166 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (369)
|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|......|.. ..+|++|+++++.+. .+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence 66555566667777777777777664433444433 5667777777777544333322 246677777776654 233
Q ss_pred ccc------------------------------cCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCcc
Q 040974 246 SSL------------------------------GKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDE 295 (369)
Q Consensus 246 ~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (369)
..+ ..+++|+.|++++|......|..+.++++|+.|++++|...+..|..
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 221 01235556666665544455666666666666666666443344443
Q ss_pred ccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCCCc
Q 040974 296 IGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 296 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
. .+++|+.|++++|.....+|. ...+|+.|++++|.+. .+|..+.. ++|++|++++|+-...+|..+
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred C-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 3 456666666666654333332 1346777777777776 45555444 788888888875444676543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=2.3e-24 Score=186.02 Aligned_cols=115 Identities=36% Similarity=0.512 Sum_probs=86.6
Q ss_pred ccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040974 243 SIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSN 322 (369)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 322 (369)
.+|..+..+++|..|++++|.+. ..|..++.+-.|+.|+++.|++. ..|..+..+..++.+-.++|++....+..+..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 34444556677777888777666 56666777777888888888776 66766666667777777777777555556888
Q ss_pred CCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeec
Q 040974 323 LTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFT 360 (369)
Q Consensus 323 ~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~ 360 (369)
+.+|..||+.+|.+. .+|..+.. ++|++|++.||+|.
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 899999999999987 66777766 99999999999987
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.2e-24 Score=185.15 Aligned_cols=264 Identities=31% Similarity=0.428 Sum_probs=198.0
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
++.+.++.|.+... ... +.++..+.++.++++++. ..|.+++.+..++.++.++|++. .+|+.+..+.+|.+++++
T Consensus 47 l~~lils~N~l~~l-~~d-l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-RED-LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhc-cHh-hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 67777888877533 333 788888888999888887 67778888888888888888887 788888888888888888
Q ss_pred CCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCC
Q 040974 141 TNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPI 220 (369)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 220 (369)
+|.+. ..++.+..+-.|+.++..+|++. ..|+.+..+.++..+++.+|.+....+..+ .++.|++++...|-+. .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence 88877 66777788888888888888877 667777778888888888887764433333 3777778887777665 66
Q ss_pred cccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCC
Q 040974 221 PLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMR 300 (369)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 300 (369)
|..++.+..|.-|++..|.+. ..| .|.++..|+++.++.|.+.........+++++..|++.+|++. ..|..+.-+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 777777777888888887776 555 5777777788888777776443444557777788888888776 6677677777
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 301 SLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 301 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+|+.||+++|.|+ .+|..++++ +|+.|-+.||++.
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 7888888888777 455567777 7777777777653
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.5e-20 Score=176.75 Aligned_cols=263 Identities=26% Similarity=0.377 Sum_probs=195.7
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.-..++++.+.+. .+|.. +. ++|+.|++.+|+++ .+|. ..++|++|++++|.++ .+|.. .++|++|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~-l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcc-hh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 3567899999887 56665 43 47999999999988 4554 3588999999999988 45643 478999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
++|.++ .+|.. ..+|+.|++++|++.. +|. ..++|+.|++++|.+.. ++.. ..+|+.|++++|.+..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 999887 44543 3578899999998874 343 24789999999998874 3332 3467888899988873
Q ss_pred CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCC
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKM 299 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (369)
+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ .|.. .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 4431 2478999999999874 4432 3578889999998874 4432 2578999999998873 4432 3
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCCCc
Q 040974 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 300 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
++|+.|++++|.+.+ +|.. ..+|+.|++++|++. .+|..+.. ++|+.|++++|++++.+|..+
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 689999999999884 4542 347888999999987 67776655 889999999999998877654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=6.7e-23 Score=176.69 Aligned_cols=252 Identities=26% Similarity=0.334 Sum_probs=172.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCC-CcCcccCCccccCCCCCcEEE
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGG-NQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..+.|.|..|.+. .+|..+|+.+++||.|+|++|+|+.+-|++|..++.|..|.+-+ |.|++...+.|.++..|+.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 7888999999886 67777799999999999999999988999999999887776655 888866667788899999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccc------------ccCCcCCcCCCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFS------------GFIPPDIGNSKSM 206 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------~~~~~~l~~l~~L 206 (369)
+.-|.+.-.....|..+++|..|.+.+|.+..+....+..+..++.+.+..|.+- ...+..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888877555667888899999999988887555557778888888776655411 0011111111111
Q ss_pred cEEEc-------------------------cCCcCCCCCc-ccccCCCCcceeeccccccccccCccccCCCCCCEEEcc
Q 040974 207 SVLYL-------------------------SSNKFSGPIP-LSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLK 260 (369)
Q Consensus 207 ~~L~l-------------------------~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (369)
.-..+ +.+.....-| ..|..+++|++|++++|.++...+.+|.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111 1111111222 245666777777777777766666666666777777777
Q ss_pred CCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 040974 261 GNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQF 312 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 312 (369)
+|++..+....|.++..|+.|++.+|+|+...|.+|....+|.+|++-.|++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 7776655566666777777777777777666666666667777777666544
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4.5e-19 Score=172.63 Aligned_cols=316 Identities=24% Similarity=0.344 Sum_probs=224.3
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccc--cCCCcCCCCCCCCCCCCccccc----------------eeeCCCCCEEEEEcC
Q 040974 6 SSESNEEADALLKWKASLQNHNRSL--LSSWVKDTTNVSSKTSPCAWYG----------------ISCNDAGRVDNITLP 67 (369)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~--~~~W~~~~~~~~~~~~~c~~~~----------------~~~~~~~~l~~l~l~ 67 (369)
...+.+|.+.+++..+.+.+++... ...|+ .+.++|.... |.|.+ +.|+.+...
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~-------~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-~~vt~l~~~ 129 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRG-------GADQYCILSENSQEILSIVFNTEGYTVEGGG-KSVTYTRVT 129 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccC-------CCCcccccCCcchhhheeeecCCceEEecCC-Ccccccccc
Confidence 3456788899999999897744322 23487 7778886544 44543 345555544
Q ss_pred CCCCccc--------------------cCC-------ccc---C--CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEEC
Q 040974 68 AKGLKGK--------------------LHD-------FSF---S--LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYF 115 (369)
Q Consensus 68 ~~~~~~~--------------------~~~-------~~~---~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 115 (369)
+...... .+. .++ . -..+.+.|++++++++ .+|..+. ++|+.|++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~L 206 (754)
T PRK15370 130 ESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLIL 206 (754)
T ss_pred cccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEe
Confidence 4211100 000 001 1 1145789999998888 5666543 58999999
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccccc
Q 040974 116 GGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF 195 (369)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (369)
++|.+. .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.+..
T Consensus 207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~- 276 (754)
T PRK15370 207 DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC- 276 (754)
T ss_pred cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-
Confidence 999998 5676553 58999999999988 5666553 47999999999987 4555543 589999999998884
Q ss_pred CCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcC
Q 040974 196 IPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNL 275 (369)
Q Consensus 196 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (369)
+|..+ .++|+.|++++|.+.. +|..+. +.|+.|++++|.++. +|..+ .++|+.|++++|.++. +|..+.
T Consensus 277 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-- 345 (754)
T PRK15370 277 LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP-- 345 (754)
T ss_pred ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--
Confidence 55544 2589999999998874 444332 478999999999874 44433 3689999999999884 555443
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccC----cC-CCCC
Q 040974 276 TGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLL----EN-PMLT 350 (369)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~~-~~L~ 350 (369)
++|+.|++++|.+. ..|..+ .++|+.|++++|.+. .+|..+. ..|+.|++++|++. .+|..+ .. +.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 78999999999987 456544 378999999999998 4555443 37999999999997 445432 22 7789
Q ss_pred EEEccCCeec
Q 040974 351 QLSLDNNHFT 360 (369)
Q Consensus 351 ~L~l~~n~~~ 360 (369)
+|++.+|+++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 9999999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-21 Score=168.85 Aligned_cols=253 Identities=25% Similarity=0.298 Sum_probs=172.2
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC-CcCCCCCCccccCCCCCcEEE
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT-NHLDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 162 (369)
+.-.+++|..|+|+.+.+.+|+.+++||.|||+.|.|+.+-|+.|.++++|..|.+.+ |.++..-...|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3578899999999988999999999999999999999999999999999998888876 889855556788999999999
Q ss_pred eeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC------------CCcccccCCCCc
Q 040974 163 LFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG------------PIPLSFGNLSNL 230 (369)
Q Consensus 163 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------~~~~~~~~~~~L 230 (369)
+.-|++.-+..+.|..++++..|.+.+|.+..+-..++..+..++.+.+..|.+.. ..+..+++..-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999887888889999999999999999886555578888888888887775321 011111111111
Q ss_pred ceeecccccccc-------------------------ccC-ccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEcc
Q 040974 231 NSLHLYGNSVSG-------------------------SIP-SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLS 284 (369)
Q Consensus 231 ~~L~l~~~~~~~-------------------------~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (369)
.-..+.+.++.. ..| ..|..+++|+.|++++|.+++..+.+|.+...++.|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 111111111111 111 224455556666666665555555555555556666665
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcc
Q 040974 285 QNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNL 336 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~ 336 (369)
.|++.......|.++..|+.|++.+|+|+...|.+|.....|.+|.+-.|++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5555544444555555555666666655555555555555555555555533
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-21 Score=182.40 Aligned_cols=245 Identities=33% Similarity=0.422 Sum_probs=137.2
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEee
Q 040974 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLF 164 (369)
Q Consensus 85 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 164 (369)
+|+.++++.+.++ ..|+.+..|.+|+.++..+|.+. .+|..+....+|++|.+..|.+. .+|+....++.|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 3445555554444 33344445555555555555443 44444444444555555555444 333334445555555555
Q ss_pred ccccCCCCCccCCCCCC-CCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccc
Q 040974 165 SNHLNGSVPPSLSNLTD-LFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGS 243 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (369)
.|++....+..+.-... |+.++.+.+.+.......=..++.|+.|++.+|.+++.....+.++.+|+.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55544222222222221 34444444433321111112345577777777777765555667777777777777777645
Q ss_pred cCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCccc-CCccccC
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGV-LPPSVSN 322 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~ 322 (369)
....+.+++.|++|++++|.++ .+|..+..++.|++|...+|.+. ..| .+..++.|+.+|++.|.+... ++... .
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p 474 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-P 474 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-C
Confidence 5555677777777777777777 55667777777777777777776 556 566777777777777777643 22222 2
Q ss_pred CCCCCEEEccCCcc
Q 040974 323 LTNLKELVLLYNNL 336 (369)
Q Consensus 323 ~~~L~~L~l~~n~~ 336 (369)
.++|++||++||.-
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 26777777777754
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=5.2e-21 Score=172.36 Aligned_cols=276 Identities=22% Similarity=0.208 Sum_probs=136.3
Q ss_pred EEcCCCCCccccCCcccCCCCCCCEEeCCCCccccc----CCcCCCCCCCCCEEECCCCcCcc------cCCccccCCCC
Q 040974 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGT----IPPQISNLTNLIHLYFGGNQFSG------NIPPEVGLMSH 133 (369)
Q Consensus 64 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~ 133 (369)
|+|.++.+.+.--...+..+++|++++++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555554222122245555666666666665322 33334455556666666554431 12233444555
Q ss_pred CcEEEccCCcCCCCCCccccCCC---CCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCC-CCCcEE
Q 040974 134 LMFLYIDTNHLDGSIPPELGQLS---SIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS-KSMSVL 209 (369)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L 209 (369)
|++|++++|.+....+..+..+. +|++|++++|++..... ..+...+..+ ++|+.|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------------~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------------RLLAKGLKDLPPALEKL 142 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------------HHHHHHHHhCCCCceEE
Confidence 55555555555433332222222 25555555544431000 0111122233 455555
Q ss_pred EccCCcCCCC----CcccccCCCCcceeeccccccccc----cCccccCCCCCCEEEccCCCCccc----cchhhhcCCC
Q 040974 210 YLSSNKFSGP----IPLSFGNLSNLNSLHLYGNSVSGS----IPSSLGKLKSLFNLQLKGNQLTGY----IPSSFRNLTG 277 (369)
Q Consensus 210 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~ 277 (369)
++++|.+.+. ....+..++.|++|++++|.+++. .+..+...++|++|++++|.+.+. ....+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 6555555421 122344445566666666655421 122233445666666666665432 2233445566
Q ss_pred CCEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCccccc----CCccC
Q 040974 278 LLSLLLSQNKLFGSIPDEIG-----KMRSLSILDLSQNQFKGV----LPPSVSNLTNLKELVLLYNNLSGS----IPPLL 344 (369)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~ 344 (369)
|+.|++++|.+.+.....+. ..+.|+.|++++|.+++. +...+..+++|+.+++++|.+.+. ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777766532111111 236777777777776521 223445567778888888877744 22222
Q ss_pred cC--CCCCEEEccCCee
Q 040974 345 EN--PMLTQLSLDNNHF 359 (369)
Q Consensus 345 ~~--~~L~~L~l~~n~~ 359 (369)
.. +.|+++++.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 22 5677777777653
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=8.7e-21 Score=170.89 Aligned_cols=255 Identities=24% Similarity=0.251 Sum_probs=146.9
Q ss_pred CEEEEEcCCCCCccc----cCCcccCCCCCCCEEeCCCCcccc------cCCcCCCCCCCCCEEECCCCcCcccCCcccc
Q 040974 60 RVDNITLPAKGLKGK----LHDFSFSLFPHLAYLDLSYNKLFG------TIPPQISNLTNLIHLYFGGNQFSGNIPPEVG 129 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 129 (369)
.++.++++++.+... +... +...++++.++++++.+.. ..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 499999999998543 3333 6678889999999987762 2345667789999999999998755555555
Q ss_pred CCCC---CcEEEccCCcCCCC----CCccccCC-CCCcEEEeeccccCCC----CCccCCCCCCCCEEEccCcccccc--
Q 040974 130 LMSH---LMFLYIDTNHLDGS----IPPELGQL-SSIVELSLFSNHLNGS----VPPSLSNLTDLFILFLQDNSFSGF-- 195 (369)
Q Consensus 130 ~l~~---L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-- 195 (369)
.+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+.+. ....+..+++|++|++++|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 5544 99999999987732 22334555 7888888888877632 222344455666666666655421
Q ss_pred --CCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhh
Q 040974 196 --IPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFR 273 (369)
Q Consensus 196 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (369)
+...+...++|++|++++|.+.+.... .....+..+++|++|++++|.+.+.....+.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--------------------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGAS--------------------ALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHH--------------------HHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 112223344555555555554321111 1112233344555555555544432111111
Q ss_pred -----cCCCCCEEEccCCcCcc----cCCccccCCCCCCEEEccCCcCccc----CCccccCC-CCCCEEEccCCc
Q 040974 274 -----NLTGLLSLLLSQNKLFG----SIPDEIGKMRSLSILDLSQNQFKGV----LPPSVSNL-TNLKELVLLYNN 335 (369)
Q Consensus 274 -----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~-~~L~~L~l~~n~ 335 (369)
..+.|++|++++|.+.+ .....+..+++|+.+++++|.+.+. ....+... +.|+++++.+|+
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 12456666666665531 1122333446666666666666533 22333333 566667666654
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=6.6e-21 Score=180.22 Aligned_cols=243 Identities=33% Similarity=0.432 Sum_probs=163.0
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEcc
Q 040974 109 NLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188 (369)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 188 (369)
+|++++++.+.+. .+|+.+..+.+|+.+...+|.++ .+|..+....+|+.|.+..|.+. ..|........|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4555555555554 34455555555555555555553 44444444555555555555554 233344445555555555
Q ss_pred CccccccCCcCCcCCCC-CcEEEccCCcCCCCCc-ccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCcc
Q 040974 189 DNSFSGFIPPDIGNSKS-MSVLYLSSNKFSGPIP-LSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTG 266 (369)
Q Consensus 189 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 266 (369)
.|.+.......+..... ++.+..+.+.+. ..| ..=..++.|+.|++.+|.+++.....+.+.++|+.|+|++|.+..
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 55554222211211111 333444444333 111 011234678999999999988777778889999999999999997
Q ss_pred ccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc-CCccCc
Q 040974 267 YIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS-IPPLLE 345 (369)
Q Consensus 267 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~ 345 (369)
.....+.++..|+.|++++|.+. .+|.....++.|++|....|++. ..| .+..++.|+.+|++.|++... ++....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 77778899999999999999998 77888999999999999999998 566 788999999999999999853 444444
Q ss_pred CCCCCEEEccCCe
Q 040974 346 NPMLTQLSLDNNH 358 (369)
Q Consensus 346 ~~~L~~L~l~~n~ 358 (369)
.++|++||++||.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 4999999999995
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=1.3e-17 Score=161.81 Aligned_cols=243 Identities=28% Similarity=0.401 Sum_probs=189.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.+++..|++.. +|. ..++|++|++++|+++ .+|.. .++|+.|++.+|.+. .+|.. ..+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 68999999998873 554 2589999999999998 44542 468999999999987 55553 367889999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
++|.++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|.+++|.++. +|. ...+|++|++++|.+..
T Consensus 290 s~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC-
Confidence 999988 45542 4789999999999874 3332 2468889999998874 443 23589999999999884
Q ss_pred CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCC
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKM 299 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (369)
+|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ .|.. .++|+.|++++|.+.+ .|.. +
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~ 421 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---P 421 (788)
T ss_pred CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---h
Confidence 4432 3578899999999874 5543 3579999999999984 4432 3689999999999974 5543 3
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccC
Q 040974 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLL 344 (369)
Q Consensus 300 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 344 (369)
.+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 57899999999998 678888999999999999999998766544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=7.6e-18 Score=164.09 Aligned_cols=247 Identities=25% Similarity=0.443 Sum_probs=189.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+.+.+++++.+++ .+|.. + .++|+.|++++|+++ .+|..+. ++|++|++++|.+. .+|..+ ..+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEE
Confidence 35788999998876 45543 2 257999999999998 5565443 58999999999988 567655 35799999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|++|++++|.++. ++..+ .++|+.|++++|.+..
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc
Confidence 9999988 6676654 58999999999987 4565553 589999999998874 34333 2478999999998874
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.+. ..|..+. ++|+.|++++|.+. ..|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 44433 2689999999999874 555443 78999999999988 4555553 68999999999987 4555443
Q ss_pred CCCCCEEEccCCcCcccCCccc----cCCCCCCEEEccCCccc
Q 040974 299 MRSLSILDLSQNQFKGVLPPSV----SNLTNLKELVLLYNNLS 337 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~~~~~l----~~~~~L~~L~l~~n~~~ 337 (369)
..|+.|++++|++. .+|..+ ..++.+..+++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47999999999998 445433 34588899999999986
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=3.5e-18 Score=131.67 Aligned_cols=180 Identities=29% Similarity=0.476 Sum_probs=104.7
Q ss_pred CCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEE
Q 040974 179 LTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQ 258 (369)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 258 (369)
+..++.|.+++|.++ ..+..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++.|++. ..|..|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344455555555555 34444555666666666666655 45555666666666666666654 5566666666666666
Q ss_pred ccCCCCcc-ccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 259 LKGNQLTG-YIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 259 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+.+|.+.+ ..|..|..+..|+.|.+++|.+. ..|...+.+.+|+.|.+++|.+. .+|..++.+..|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 66665543 34555556666666666666664 56666666677777777776665 45666666667777777777666
Q ss_pred ccCCccCcC---CCCCEEEccCCeecccC
Q 040974 338 GSIPPLLEN---PMLTQLSLDNNHFTGYL 363 (369)
Q Consensus 338 ~~~~~~~~~---~~L~~L~l~~n~~~~~i 363 (369)
...|..... .+-+.+.+..|+....|
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 333332211 22334455555544333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=126.76 Aligned_cols=154 Identities=31% Similarity=0.496 Sum_probs=78.5
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEE
Q 040974 131 MSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLY 210 (369)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (369)
+.++..|.+++|.++ ..|+.++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344444445555444 33444444555555555555444 34444445555555555444443 3445555555555555
Q ss_pred ccCCcCCC-CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 211 LSSNKFSG-PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 211 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
+.+|.+.. ..|.-|..+..|+-|++++|.+. ..|..++++++|+.|.+.+|.+- ..|..++.+..|+.|.+.+|++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 55554432 33444444555555555555554 44445555555555555555554 44555555555555666555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=1.5e-13 Score=133.36 Aligned_cols=155 Identities=30% Similarity=0.446 Sum_probs=118.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccccceeeCCC-----CCEEEEEcCCCCCccccCCccc
Q 040974 6 SSESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCNDA-----GRVDNITLPAKGLKGKLHDFSF 80 (369)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~~~ 80 (369)
.+..++|..||+++++++.... . .+|....| ....|.|.|+.|... ..++.++|+++.+.+.++.. +
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~-~~W~g~~C----~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~-i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--R-FGWNGDPC----VPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND-I 438 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--c-CCCCCCCC----CCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-H
Confidence 3446678999999999886422 1 37871111 001137999999521 24888999999888888876 8
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCC-CCCc
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQL-SSIV 159 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~ 159 (369)
..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|+.+.++++|++|++++|.+++.+|..+... .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 888999999999998888888888888899999999988888888888888889999998888888888776543 4566
Q ss_pred EEEeecccc
Q 040974 160 ELSLFSNHL 168 (369)
Q Consensus 160 ~L~l~~~~~ 168 (369)
.+++.+|..
T Consensus 519 ~l~~~~N~~ 527 (623)
T PLN03150 519 SFNFTDNAG 527 (623)
T ss_pred eEEecCCcc
Confidence 777776653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=8.3e-13 Score=131.17 Aligned_cols=298 Identities=23% Similarity=0.283 Sum_probs=176.6
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCc--ccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEE
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNK--LFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFL 137 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 137 (369)
.++.+++.++.+... +. -..++.|++|-+.++. +.....+.|..+|.|++||+++|.-.+.+|..++.+.+|++|
T Consensus 524 ~~rr~s~~~~~~~~~-~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc-cC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 567777777665422 22 2455689999998885 555666778899999999999887767899999999999999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccc--ccCCcCCcCCCCCcEEEccCCc
Q 040974 138 YIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFS--GFIPPDIGNSKSMSVLYLSSNK 215 (369)
Q Consensus 138 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 215 (369)
+++++.+. .+|.++.++.+|.+|++..+......+.....+.+|++|.+...... ......+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999998 88999999999999999987765556666677999999988765422 1122223445555555543332
Q ss_pred CCCCCcccccCCCCcc----eeeccccccccccCccccCCCCCCEEEccCCCCccccchhh-----h-cCCCCCEEEccC
Q 040974 216 FSGPIPLSFGNLSNLN----SLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSF-----R-NLTGLLSLLLSQ 285 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~-~~~~L~~L~l~~ 285 (369)
. .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++...+...... . .++++..+.+.+
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 2 0111122222222 2332222222 334456677888888888877653211111 0 123344444444
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc--------CCcc----CcCCCCCEEE
Q 040974 286 NKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS--------IPPL----LENPMLTQLS 353 (369)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~--------~~~~----~~~~~L~~L~ 353 (369)
+... ..+.+....++|+.|.+..+...+.+.+....+..+..+.+..+.+.+. ++.. +..+.|+++.
T Consensus 757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ 835 (889)
T KOG4658|consen 757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELI 835 (889)
T ss_pred cccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhhee
Confidence 4332 2222233457777777777766544444444444444333333322211 1111 1114466667
Q ss_pred ccCCeecccCCC
Q 040974 354 LDNNHFTGYLPH 365 (369)
Q Consensus 354 l~~n~~~~~ip~ 365 (369)
++.|+-.+.+|-
T Consensus 836 ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 836 VEECPKLGKLPL 847 (889)
T ss_pred hhcCcccccCcc
Confidence 777666656663
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-13 Score=115.30 Aligned_cols=232 Identities=20% Similarity=0.230 Sum_probs=135.4
Q ss_pred CCCCCCCCEEECCCCcCcc----cCCccccCCCCCcEEEccCCcCCCC----CCcc-------ccCCCCCcEEEeecccc
Q 040974 104 ISNLTNLIHLYFGGNQFSG----NIPPEVGLMSHLMFLYIDTNHLDGS----IPPE-------LGQLSSIVELSLFSNHL 168 (369)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~-------~~~l~~L~~L~l~~~~~ 168 (369)
+..+..+.++++++|.+.. .+...+.+.+.|+..++++- +++. +|+. +..+++|++|+|++|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4456788888999988753 24455666778888888764 3322 2322 34667888888888876
Q ss_pred CCCCCcc----CCCCCCCCEEEccCccccccC-------------CcCCcCCCCCcEEEccCCcCCCCC----cccccCC
Q 040974 169 NGSVPPS----LSNLTDLFILFLQDNSFSGFI-------------PPDIGNSKSMSVLYLSSNKFSGPI----PLSFGNL 227 (369)
Q Consensus 169 ~~~~~~~----l~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~ 227 (369)
....+.. +..+..|++|.+.+|.+...- ......-++|+.+....|++.... ...|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 5433322 355777888887777665221 112334566777777777665321 2345556
Q ss_pred CCcceeeccccccccc----cCccccCCCCCCEEEccCCCCccc----cchhhhcCCCCCEEEccCCcCcccCCccc---
Q 040974 228 SNLNSLHLYGNSVSGS----IPSSLGKLKSLFNLQLKGNQLTGY----IPSSFRNLTGLLSLLLSQNKLFGSIPDEI--- 296 (369)
Q Consensus 228 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--- 296 (369)
+.|+++.+..|.+... ....+.++++|+.||+.+|.++.. +...+..+++|+.|++++|.+...-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 6777777777765422 223455667777777777766532 22344556667777777666643222111
Q ss_pred --cCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcc
Q 040974 297 --GKMRSLSILDLSQNQFKGVL----PPSVSNLTNLKELVLLYNNL 336 (369)
Q Consensus 297 --~~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~~ 336 (369)
...|+|+.|.+.+|.|+... ...+...|.|+.|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 12466666666666665321 12233456666666666666
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=8e-13 Score=113.29 Aligned_cols=233 Identities=18% Similarity=0.170 Sum_probs=155.7
Q ss_pred cCCCCCCCEEeCCCCccccc----CCcCCCCCCCCCEEECCCCcCc---ccCC-------ccccCCCCCcEEEccCCcCC
Q 040974 80 FSLFPHLAYLDLSYNKLFGT----IPPQISNLTNLIHLYFGGNQFS---GNIP-------PEVGLMSHLMFLYIDTNHLD 145 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~---~~~~-------~~l~~l~~L~~L~l~~~~~~ 145 (369)
...+..++.++|++|.+... +...+.+.++|+..++++--.. ..+| ..+..+++|++|+|++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45667888888888877533 4445667778888888764211 1233 34456778889999988877
Q ss_pred CCCCccc----cCCCCCcEEEeeccccCCCCC-------------ccCCCCCCCCEEEccCcccccc----CCcCCcCCC
Q 040974 146 GSIPPEL----GQLSSIVELSLFSNHLNGSVP-------------PSLSNLTDLFILFLQDNSFSGF----IPPDIGNSK 204 (369)
Q Consensus 146 ~~~~~~~----~~l~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~ 204 (369)
...++.| .++..|++|.+.+|.+..... .....-+.|+.+.+..|++.+. +...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 5544443 567888888888887653211 1233456788888888876533 233455678
Q ss_pred CCcEEEccCCcCCCC----CcccccCCCCcceeeccccccccc----cCccccCCCCCCEEEccCCCCccccchhh----
Q 040974 205 SMSVLYLSSNKFSGP----IPLSFGNLSNLNSLHLYGNSVSGS----IPSSLGKLKSLFNLQLKGNQLTGYIPSSF---- 272 (369)
Q Consensus 205 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---- 272 (369)
.|+.+.++.|.+... ....+..+++|+.|+|.+|.++.. +...+..+++|+.|++++|.+.......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 888888888877632 224567788888899888877633 23445667888888888887764433222
Q ss_pred -hcCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcC
Q 040974 273 -RNLTGLLSLLLSQNKLFGS----IPDEIGKMRSLSILDLSQNQF 312 (369)
Q Consensus 273 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i 312 (369)
...|+|+.+.+.+|.+... ....+...+.|+.|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3467888888888887531 222334578888888888887
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-12 Score=115.16 Aligned_cols=208 Identities=21% Similarity=0.208 Sum_probs=99.2
Q ss_pred CCCCCCCEEECCCCcCcccCC--ccccCCCCCcEEEccCCcCCC--CCCccccCCCCCcEEEeeccccCCCCCcc-CCCC
Q 040974 105 SNLTNLIHLYFGGNQFSGNIP--PEVGLMSHLMFLYIDTNHLDG--SIPPELGQLSSIVELSLFSNHLNGSVPPS-LSNL 179 (369)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l 179 (369)
+++++|+.+.+.++.+. ..+ .....|++++.|+|++|-+.. .+......+|+|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34566666666666654 222 244556666666666654431 11122345666666666666553211111 1134
Q ss_pred CCCCEEEccCcccccc-CCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccccccc-CccccCCCCCCEE
Q 040974 180 TDLFILFLQDNSFSGF-IPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSI-PSSLGKLKSLFNL 257 (369)
Q Consensus 180 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L 257 (369)
++|+.|.++.|+++.. +...+..+|+|+.|++..|............++.|++|+|++|.+-... ......++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 5666666666665521 1122334566666666666322122222334456666666666553221 1223445556666
Q ss_pred EccCCCCcccc-ch-----hhhcCCCCCEEEccCCcCccc-CCccccCCCCCCEEEccCCcCc
Q 040974 258 QLKGNQLTGYI-PS-----SFRNLTGLLSLLLSQNKLFGS-IPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 258 ~l~~~~~~~~~-~~-----~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
+++.+.+...- +. ....+++|++|++..|++.+. ....+..+++|+.|.+..+.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66665554221 11 123345566666666555311 1112333455555555555443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.7e-11 Score=112.41 Aligned_cols=193 Identities=36% Similarity=0.510 Sum_probs=106.4
Q ss_pred EEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCC-CCcEEEccCCcCCCCCCccccCCCCCcEEEeecc
Q 040974 88 YLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMS-HLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166 (369)
Q Consensus 88 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 166 (369)
.+++..+.+. .....+..++.+..|++.++.++ .++....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555442 22222334456666666666666 4444444453 6666666666665 34344556666666666666
Q ss_pred ccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCc
Q 040974 167 HLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPS 246 (369)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 246 (369)
++.. .+......+.|+.|++++|.+.. ++........|+++.+++|... ..+..+..+..+..+.+..|.+. ..+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 6652 23223355666666666666653 3333333444666666666433 23334555556666666666554 2244
Q ss_pred cccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 247 SLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
.+..+++++.|++++|.+..... +....+++.|+++++.+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 45556666666666666653322 555666666666666554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-12 Score=114.39 Aligned_cols=209 Identities=22% Similarity=0.218 Sum_probs=147.0
Q ss_pred cCCCCCcEEEccCCcCCCCCC--ccccCCCCCcEEEeeccccCCC--CCccCCCCCCCCEEEccCccccccCCcC-CcCC
Q 040974 129 GLMSHLMFLYIDTNHLDGSIP--PELGQLSSIVELSLFSNHLNGS--VPPSLSNLTDLFILFLQDNSFSGFIPPD-IGNS 203 (369)
Q Consensus 129 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l 203 (369)
.++.+|+...|.++.+. ..+ .....|++++.|+++.|-+... +......+|+|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788999999988876 323 3567899999999999865422 2344567899999999999876332221 2257
Q ss_pred CCCcEEEccCCcCCCC-CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCcccc-chhhhcCCCCCEE
Q 040974 204 KSMSVLYLSSNKFSGP-IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYI-PSSFRNLTGLLSL 281 (369)
Q Consensus 204 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 281 (369)
+.|+.|.++.|+++.. ....+..+|+|+.|++..|............+..|++|+|++|.+.... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7899999999988742 2234567899999999998522122222344678999999999876332 2456778999999
Q ss_pred EccCCcCcccCCcc------ccCCCCCCEEEccCCcCccc-CCccccCCCCCCEEEccCCcccc
Q 040974 282 LLSQNKLFGSIPDE------IGKMRSLSILDLSQNQFKGV-LPPSVSNLTNLKELVLLYNNLSG 338 (369)
Q Consensus 282 ~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~~~~ 338 (369)
.++.+.+.+..-.. ...+++|+.|++..|++.+. ....+..+++|+.+.+..|.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999887543222 24578999999999998632 12345567788888888887764
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=5.1e-11 Score=110.56 Aligned_cols=193 Identities=35% Similarity=0.468 Sum_probs=99.4
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCC-CCcEEEeeccccCCCCCccCCCCCCCCEEEccCc
Q 040974 112 HLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLS-SIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN 190 (369)
Q Consensus 112 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (369)
.+++..+.+. .....+.....++.|++.++.++ .++....... +|+.|++++|++. ..+..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455555442 12222333455666666666655 3444444442 6666666666655 23334555666666666666
Q ss_pred cccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccch
Q 040974 191 SFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPS 270 (369)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 270 (369)
.+.. ++......+.|+.|++++|.+. .++........|+++.+++|... ..+..+..+.++..+.+.+|.+. ..+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 6553 2222224556666666666655 33333233344666666666322 23334455555555555555554 2244
Q ss_pred hhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 271 SFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
.+..++++++|++++|.+..... +....+++.|+++++.+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 45555566666666666653322 455566666666665554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.1e-11 Score=104.46 Aligned_cols=129 Identities=31% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEE
Q 040974 203 SKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLL 282 (369)
Q Consensus 203 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 282 (369)
..-|+++|+++|.+. .+.++..-.|.++.|+++.|+++.. ..+..+++|+.||+++|.+. ....+-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 445667777777665 4444555566777777777776533 23566677777777777665 3344444566677777
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcCccc-CCccccCCCCCCEEEccCCccc
Q 040974 283 LSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGV-LPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+++|.+.+ ...+..+.+|..||+++|+|... --..++.+|-|+.+.|.+|++.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77776642 12345566777777777766521 1234566777777777777665
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.5e-11 Score=102.31 Aligned_cols=222 Identities=20% Similarity=0.225 Sum_probs=142.1
Q ss_pred cCCCCCcEEEccCCc--------CCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCC
Q 040974 129 GLMSHLMFLYIDTNH--------LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDI 200 (369)
Q Consensus 129 ~~l~~L~~L~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 200 (369)
.-+.+|.+|..+... +...+|..+.-+.+|..+.++.|.-..+.. ....-|.|+++.+....++.. +.+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~--~~l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDV--PSL 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccc--ccc
Confidence 335667777776532 111233334445677777777665332211 111235666666655444311 111
Q ss_pred cCCCCCcEEEccCC---cCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCC
Q 040974 201 GNSKSMSVLYLSSN---KFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTG 277 (369)
Q Consensus 201 ~~l~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (369)
.....+. |..+. -.++........-..|+++++++|.++ .+.+++.-.|.++.|++++|.+... . .++.+++
T Consensus 256 ~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~ 330 (490)
T KOG1259|consen 256 LPETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQ 330 (490)
T ss_pred cchhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhccc
Confidence 1111111 22111 111111122333457999999999998 5566777789999999999999743 2 3888999
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc-CCccCcC-CCCCEEEcc
Q 040974 278 LLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS-IPPLLEN-PMLTQLSLD 355 (369)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~-~~L~~L~l~ 355 (369)
|+.|++++|.++ ....+-..+.+++.|.+++|.+.+. ..+..+-+|..||+++|+|... ....+.. |.|+.+.+.
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 999999999887 4445556788999999999998743 4577888999999999999743 2234444 899999999
Q ss_pred CCeecc
Q 040974 356 NNHFTG 361 (369)
Q Consensus 356 ~n~~~~ 361 (369)
+|++.+
T Consensus 408 ~NPl~~ 413 (490)
T KOG1259|consen 408 GNPLAG 413 (490)
T ss_pred CCCccc
Confidence 999983
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=6.6e-11 Score=117.82 Aligned_cols=178 Identities=24% Similarity=0.293 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCC-ccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 60 RVDNITLPAKGL-KGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 60 ~l~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.++.+-+.++.. ...++...|..++.|++||+++|.=-+.+|..++++-+||+|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 578888888752 23444444889999999999988554589999999999999999999998 8999999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccC--CCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCc----EEEcc
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLN--GSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMS----VLYLS 212 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~ 212 (369)
+..+......+.....+.+|++|.+...... ...-..+.++.+|+.+.+...... +...+..+..|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hHhhhhhhHHHHHHhHhhhhc
Confidence 9988755455566666999999999875422 122233455566666555433220 111112222222 22222
Q ss_pred CCcCCCCCcccccCCCCcceeeccccccc
Q 040974 213 SNKFSGPIPLSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (369)
++... .....+..+.+|+.|.+.++.+.
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCc
Confidence 22222 33344556667777777777654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.9e-10 Score=92.38 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=5.0
Q ss_pred CCCCCcEEEccCCcCC
Q 040974 202 NSKSMSVLYLSSNKFS 217 (369)
Q Consensus 202 ~l~~L~~L~l~~~~~~ 217 (369)
.+++|+.|++.+|++.
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 3444444444444443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=6.8e-12 Score=114.07 Aligned_cols=170 Identities=29% Similarity=0.508 Sum_probs=110.6
Q ss_pred CEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCc
Q 040974 111 IHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN 190 (369)
Q Consensus 111 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (369)
...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|++. ..|..+..|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 45566777766 66776767777777777777766 56666777777777777777766 4555554444 666666666
Q ss_pred cccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccch
Q 040974 191 SFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPS 270 (369)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 270 (369)
+++ .+|..++..++|..|+.+.|.+. .++..+..+..|+.|.+..|.+. .+|..+..+ .|..||++.|++. .+|.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence 665 45556666666777777777665 45555666666777777776665 334444433 3666777777666 5666
Q ss_pred hhhcCCCCCEEEccCCcCc
Q 040974 271 SFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~ 289 (369)
.|..+..|++|.|.+|.+.
T Consensus 229 ~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhheeeeeccCCCC
Confidence 6666777777777777665
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=6.8e-12 Score=114.06 Aligned_cols=195 Identities=29% Similarity=0.409 Sum_probs=156.1
Q ss_pred CCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCccee
Q 040974 154 QLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSL 233 (369)
Q Consensus 154 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 233 (369)
.+.--...+++.|++. .+|..+..+..|+.+.++.|.+. .++..+..+..|.+++++.|++. ..|..+..+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence 3444566788888887 66777777788888888888876 67788888999999999999887 566555554 47888
Q ss_pred eccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 234 HLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
.+++|.++ .+|..++..+.|..|+.+.|.+. ..+..+.++.+|+.|.+..|.+. .+|..+. .-.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee
Confidence 89999887 67777888889999999999987 66777888889999999999887 5666666 456889999999998
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccCcC----CCCCEEEccCCe
Q 040974 314 GVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN----PMLTQLSLDNNH 358 (369)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~L~~L~l~~n~ 358 (369)
.+|-.|..|..|+.|.|.+|++. ..|..++. +=.++|+..-|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 67888999999999999999987 55544443 557788888885
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.1e-10 Score=91.14 Aligned_cols=125 Identities=26% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCCCcEEEeeccccCCCCCccCC-CCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCccee
Q 040974 155 LSSIVELSLFSNHLNGSVPPSLS-NLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSL 233 (369)
Q Consensus 155 l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 233 (369)
..++++|++.++.+..+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.+..........+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 33455555555555422 2233 344555555555555422 234445555555555555553222111235555555
Q ss_pred ecccccccccc-CccccCCCCCCEEEccCCCCcccc---chhhhcCCCCCEEEc
Q 040974 234 HLYGNSVSGSI-PSSLGKLKSLFNLQLKGNQLTGYI---PSSFRNLTGLLSLLL 283 (369)
Q Consensus 234 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l 283 (369)
++++|.+.... ...+..+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 55555554221 123344555555555555554221 123445555555553
No 38
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=8.6e-10 Score=107.40 Aligned_cols=111 Identities=36% Similarity=0.545 Sum_probs=95.5
Q ss_pred CCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccC
Q 040974 254 LFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLY 333 (369)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 333 (369)
++.|+|++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67889999999888888899999999999999999888888888999999999999999888888889999999999999
Q ss_pred CcccccCCccCcC--CCCCEEEccCCeecccCC
Q 040974 334 NNLSGSIPPLLEN--PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 334 n~~~~~~~~~~~~--~~L~~L~l~~n~~~~~ip 364 (369)
|++.+.+|..+.. ..+..+++.+|+....+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999988887654 466788899887655554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.4e-09 Score=70.73 Aligned_cols=60 Identities=35% Similarity=0.475 Sum_probs=36.3
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 143 (369)
|+|++|++++|+++...+++|..+++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666665555566666666666666666655555556666666666666554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.3e-10 Score=104.72 Aligned_cols=244 Identities=25% Similarity=0.248 Sum_probs=134.4
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 040974 82 LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVEL 161 (369)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 161 (369)
.+..++.+.+..+.+. .....+..+++|..|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4555666666666665 23444566777777777777776 2333355677777777777777633 235556667777
Q ss_pred EeeccccCCCCCccCCCCCCCCEEEccCccccccCC-cCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccc
Q 040974 162 SLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIP-PDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSV 240 (369)
Q Consensus 162 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (369)
++.+|.+... ..+..++.|+.+++++|.+...-. . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 7777776522 344556777777777777664432 1 355666777777777655321 222233344445556655
Q ss_pred ccccCccccCCCC--CCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCccc---
Q 040974 241 SGSIPSSLGKLKS--LFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGV--- 315 (369)
Q Consensus 241 ~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--- 315 (369)
+...+ +..... |+.+++++|.+.. .+..+..+..+..+++.++.+.... .+...+.+..+....+.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 42221 122222 6667777776652 2234455566666676666654221 123344555555555554311
Q ss_pred CCc-cccCCCCCCEEEccCCccccc
Q 040974 316 LPP-SVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 316 ~~~-~l~~~~~L~~L~l~~n~~~~~ 339 (369)
... .....+.++.+.+.++.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hccccccccccccccccccCccccc
Confidence 111 134456666666666666543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.6e-10 Score=104.51 Aligned_cols=217 Identities=29% Similarity=0.332 Sum_probs=92.8
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEE
Q 040974 107 LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILF 186 (369)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 186 (369)
+..++.+.++.+.+.. .-..+..+.+|+.|++.+|.+... ...+..+++|++|++++|.+..+ ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444444455544441 222244455555555555555422 21144455555555555555422 2234444455555
Q ss_pred ccCccccccCCcCCcCCCCCcEEEccCCcCCCCCc-ccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCc
Q 040974 187 LQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIP-LSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLT 265 (369)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (369)
+.+|.+..+ ..+..++.|+.+++++|.+....+ . ...+..++.+.+.+|.+... ..+.....+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 555555422 233335555555555555543222 1 23444555555555544311 11222223333344444443
Q ss_pred cccchhhhcCCC--CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 266 GYIPSSFRNLTG--LLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 266 ~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
...+ +..... |+.++++++++. ..+..+..+..+..|++..+.+... ..+...+.+..+....+.+.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 1111 111111 455555555554 2212334445555555555544321 12233344444444444443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.4e-09 Score=69.05 Aligned_cols=59 Identities=44% Similarity=0.532 Sum_probs=27.1
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 040974 277 GLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNN 335 (369)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 335 (369)
+|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333344444444444444444443334444444444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.2e-11 Score=99.44 Aligned_cols=203 Identities=21% Similarity=0.152 Sum_probs=127.8
Q ss_pred CEEEEEcCCCCCccc-cCCcccCCC-CCCCEEeCCCCccccc-CCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcE
Q 040974 60 RVDNITLPAKGLKGK-LHDFSFSLF-PHLAYLDLSYNKLFGT-IPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMF 136 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~-~~~~~~~~~-~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 136 (369)
.|..+.+........ +... +.-+ +.|+.+||+...++.. +..-++.|.+|+.|.+.+..+.+.+...+.+-.+|+.
T Consensus 160 gV~v~Rlar~~~~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CeEEEEcchhhhcCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 566666664333222 2222 2222 3588888888877643 3444677888888888888887777777788888888
Q ss_pred EEccCCc-CCCCC-CccccCCCCCcEEEeeccccCCCCCcc-CCC-CCCCCEEEccCcccc--cc-CCcCCcCCCCCcEE
Q 040974 137 LYIDTNH-LDGSI-PPELGQLSSIVELSLFSNHLNGSVPPS-LSN-LTDLFILFLQDNSFS--GF-IPPDIGNSKSMSVL 209 (369)
Q Consensus 137 L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~-l~~L~~L~l~~~~~~--~~-~~~~l~~l~~L~~L 209 (369)
|+++.+. ++... .-.+.+|+.|..|+++.|......... ..+ -++|+.|+++++.-. .. +.....++++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 8888765 33211 123467888888888888654221111 111 257888888877522 11 11123468889999
Q ss_pred EccCCcC-CCCCcccccCCCCcceeeccccccccccCc---cccCCCCCCEEEccCCCCc
Q 040974 210 YLSSNKF-SGPIPLSFGNLSNLNSLHLYGNSVSGSIPS---SLGKLKSLFNLQLKGNQLT 265 (369)
Q Consensus 210 ~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~ 265 (369)
|+++|.. .......|..++.|++|.++.|.. .+|. .+...|.|.+|++.++--.
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 9988853 333334566788899999988853 3443 3456688889988886443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=8.7e-09 Score=87.08 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=31.4
Q ss_pred CCCCEEEccCCCCccc-cchhhhcCCCCCEEEccCCcCccc-CCccccCCCCCCEEEccCCcCc
Q 040974 252 KSLFNLQLKGNQLTGY-IPSSFRNLTGLLSLLLSQNKLFGS-IPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 252 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
|++..+.+..|.+... ..+.+..+|.+..|.++.+++.+. ..+.+..++.|..|.++++++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555555555555432 223444445555555555555421 2234455566666666666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.7e-10 Score=95.22 Aligned_cols=180 Identities=21% Similarity=0.141 Sum_probs=109.4
Q ss_pred CCCcEEEccCCcCCCCC-CccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcc-ccccC-CcCCcCCCCCcE
Q 040974 132 SHLMFLYIDTNHLDGSI-PPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS-FSGFI-PPDIGNSKSMSV 208 (369)
Q Consensus 132 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~l~~l~~L~~ 208 (369)
..|++|||+...++... ...+..|.+|+.|.+.++++...+...++.-.+|+.++++.+. ++..- .-.+.+++.|++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34777777776665321 2234567777777777777765555566666777777777653 33221 112456777888
Q ss_pred EEccCCcCCCCCcc-ccc-CCCCcceeeccccccc---cccCccccCCCCCCEEEccCCC-CccccchhhhcCCCCCEEE
Q 040974 209 LYLSSNKFSGPIPL-SFG-NLSNLNSLHLYGNSVS---GSIPSSLGKLKSLFNLQLKGNQ-LTGYIPSSFRNLTGLLSLL 282 (369)
Q Consensus 209 L~l~~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 282 (369)
|+++.|......-. ... --++|+.|+++|+.-. ..+..-...+|+|.+||++++. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 88888866532211 111 2357888888886421 1111122467888888888864 4433444666788888888
Q ss_pred ccCCcCc-ccCCccccCCCCCCEEEccCCc
Q 040974 283 LSQNKLF-GSIPDEIGKMRSLSILDLSQNQ 311 (369)
Q Consensus 283 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 311 (369)
++.|... ....-.+...|+|.+|++.++-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8887532 1222245667888888887763
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.52 E-value=1.5e-07 Score=56.96 Aligned_cols=41 Identities=44% Similarity=0.975 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcccCCccccCCCcCCCCCCCC-CCCCccccceeeC
Q 040974 10 NEEADALLKWKASLQNHNRSLLSSWVKDTTNVSS-KTSPCAWYGISCN 56 (369)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~c~~~~~~~~ 56 (369)
++|++||++||.++.+++...+.+|. .. ..++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~------~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN------PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--------TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC------CcCCCCCeeeccEEeC
Confidence 57999999999999987888889999 22 2899999999994
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=7.8e-10 Score=103.68 Aligned_cols=198 Identities=24% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCCCcEEEccCCcCCCCC-CccccCCCCCcEEEeeccccCCCCCccCCCC-CCCCEEEccCcccc---ccCC---cCCc-
Q 040974 131 MSHLMFLYIDTNHLDGSI-PPELGQLSSIVELSLFSNHLNGSVPPSLSNL-TDLFILFLQDNSFS---GFIP---PDIG- 201 (369)
Q Consensus 131 l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~---~~~~---~~l~- 201 (369)
+++++.|.+-...-.+-. |-.+..+..|+.|.+.+|.+.. ..++..+ .+|++|-..+. .+ .++. ..+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhcccccc
Confidence 345555555443322211 4456677888888888887652 1222221 23444322211 00 0000 0011
Q ss_pred --CCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCC
Q 040974 202 --NSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLL 279 (369)
Q Consensus 202 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 279 (369)
....|...++++|.+. ....++.-++.++.|+++.|.++... .+..+++|++|||++|.+.........++. |.
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence 1224555566666555 33444555566667777776665332 455666677777777666533322333333 66
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCCEEEccCCccc
Q 040974 280 SLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVL-PPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~n~~~ 337 (369)
.|.+.+|.+... ..+.++.+|+.||+++|-+.+.. ...+..+..|+.|+|.||++.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666665421 12455666666666666554320 112334456666666666654
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=1e-09 Score=96.56 Aligned_cols=279 Identities=18% Similarity=0.079 Sum_probs=160.1
Q ss_pred CCEEEEEcCCCCCccccCCcc-cCCCCCCCEEeCCCC-cccccCCcCC-CCCCCCCEEECCCCc-CcccCCc-cccCCCC
Q 040974 59 GRVDNITLPAKGLKGKLHDFS-FSLFPHLAYLDLSYN-KLFGTIPPQI-SNLTNLIHLYFGGNQ-FSGNIPP-EVGLMSH 133 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~-~l~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~-~l~~l~~ 133 (369)
++++.+++.++.-.+.-+... -.++|+++.|.+.+| .+++.....+ ..|++|+.|++..|. ++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 466777777765443322222 347788888887777 3443322222 457778888887754 3322222 2346788
Q ss_pred CcEEEccCCc-CCCCCC-ccccCCCCCcEEEeeccccCCC--CCccCCCCCCCCEEEccCcc-ccccCC-cCCcCCCCCc
Q 040974 134 LMFLYIDTNH-LDGSIP-PELGQLSSIVELSLFSNHLNGS--VPPSLSNLTDLFILFLQDNS-FSGFIP-PDIGNSKSMS 207 (369)
Q Consensus 134 L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~ 207 (369)
|++|++++|. +++... ..+.++..++.+.+.+|.-.+. +...-+++..+..+++..|. +++... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888775 332111 1234566666776666532111 01111334555556654442 222210 1112466788
Q ss_pred EEEccCCcCCCC-Cccc-ccCCCCcceeecccccc-ccccCccc-cCCCCCCEEEccCCCCcc--ccchhhhcCCCCCEE
Q 040974 208 VLYLSSNKFSGP-IPLS-FGNLSNLNSLHLYGNSV-SGSIPSSL-GKLKSLFNLQLKGNQLTG--YIPSSFRNLTGLLSL 281 (369)
Q Consensus 208 ~L~l~~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 281 (369)
.++.+++.-.+. .... -.++.+|+.+.+++|+. +......+ .+++.|+.+++.++.... .+...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 888887743221 1122 24678899999988863 22222222 356889999998876432 122233467889999
Q ss_pred EccCCcCcccC-----CccccCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEEccCCccc
Q 040974 282 LLSQNKLFGSI-----PDEIGKMRSLSILDLSQNQFK-GVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 282 ~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
.+++|...... ...-..+..|+.+.+++++.. +.....+..+++|+++++.+++-.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 99988653211 112245678889999998764 345566778899999999988543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=5.1e-08 Score=82.54 Aligned_cols=165 Identities=21% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC-CcccccCCCCcceeeccccccccc--cCcccc-CCCC
Q 040974 178 NLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP-IPLSFGNLSNLNSLHLYGNSVSGS--IPSSLG-KLKS 253 (369)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~-~~~~ 253 (369)
++|.|+.|++++|.+...+...-....+|+.|.+.+..+.-. ....+..+|.+++|+++.|..... ...... ..+.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 344444444444443322211112334555555555444321 122344556666666666633211 011111 1235
Q ss_pred CCEEEccCCCCcc--ccchhhhcCCCCCEEEccCCcCccc-CCccccCCCCCCEEEccCCcCccc-CCccccCCCCCCEE
Q 040974 254 LFNLQLKGNQLTG--YIPSSFRNLTGLLSLLLSQNKLFGS-IPDEIGKMRSLSILDLSQNQFKGV-LPPSVSNLTNLKEL 329 (369)
Q Consensus 254 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L 329 (369)
+.++...+|...- .....-.-+|++..+.+..|.+... ....+..+|.+..|+++.++|.+. ....+..++.|+-|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 5666666654331 1111223468999999999988643 334566778888999999998642 33567899999999
Q ss_pred EccCCcccccCCc
Q 040974 330 VLLYNNLSGSIPP 342 (369)
Q Consensus 330 ~l~~n~~~~~~~~ 342 (369)
.+.++++.+.+..
T Consensus 255 Rv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 255 RVSENPLSDPLRG 267 (418)
T ss_pred eccCCcccccccC
Confidence 9999999865443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=6.4e-08 Score=80.92 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=133.6
Q ss_pred CCCCCCEEeCCCCccccc----CCcCCCCCCCCCEEECCCCcCc---cc-------CCccccCCCCCcEEEccCCcCCCC
Q 040974 82 LFPHLAYLDLSYNKLFGT----IPPQISNLTNLIHLYFGGNQFS---GN-------IPPEVGLMSHLMFLYIDTNHLDGS 147 (369)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~~~~~~ 147 (369)
-+..++.++|++|.|... +...+.+-++|+..++++-... +. +...+.+||+|+..+|++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 366778888888877543 3334455567777777653221 11 223345667777777777766644
Q ss_pred CCcc----ccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCc--
Q 040974 148 IPPE----LGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIP-- 221 (369)
Q Consensus 148 ~~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-- 221 (369)
.|+- ++.-+.|++|.+++|.+.......++ ..|.+|- .......-|.|+.+....|++.....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la---------~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA---------YNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH---------HHhhhccCCCceEEEeccchhccCcHHH
Confidence 4432 24455666666666654322211111 0111110 00112234667777777776652111
Q ss_pred --ccccCCCCcceeeccccccccccC-----ccccCCCCCCEEEccCCCCccc----cchhhhcCCCCCEEEccCCcCcc
Q 040974 222 --LSFGNLSNLNSLHLYGNSVSGSIP-----SSLGKLKSLFNLQLKGNQLTGY----IPSSFRNLTGLLSLLLSQNKLFG 290 (369)
Q Consensus 222 --~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 290 (369)
..+.....|+++.+..|.+..... ..+..+.+|+.|++.+|.++-. ....+..++.|+.|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 123334577777777776652211 1234567888888888877632 22344566778888888886653
Q ss_pred cCCccc------cCCCCCCEEEccCCcCcccCCc-----cc--cCCCCCCEEEccCCccc
Q 040974 291 SIPDEI------GKMRSLSILDLSQNQFKGVLPP-----SV--SNLTNLKELVLLYNNLS 337 (369)
Q Consensus 291 ~~~~~~------~~~~~L~~L~l~~~~i~~~~~~-----~l--~~~~~L~~L~l~~n~~~ 337 (369)
.....+ ...|+|..|...+|.+.+.... .+ ..+|-|..+.+.||.+.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 222211 1347777888877765432111 11 35677777777888775
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=4.3e-08 Score=81.95 Aligned_cols=186 Identities=20% Similarity=0.147 Sum_probs=115.6
Q ss_pred cCCCCCCCCEEEccCccccccCCc----CCcCCCCCcEEEccCCcCCCCCccc-------------ccCCCCcceeeccc
Q 040974 175 SLSNLTDLFILFLQDNSFSGFIPP----DIGNSKSMSVLYLSSNKFSGPIPLS-------------FGNLSNLNSLHLYG 237 (369)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~ 237 (369)
.+..||.|+.+++++|.+....++ .+++.+.|.+|.+++|.+....... .++-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 356677777777777766544333 3456778888888888765322221 12457888898888
Q ss_pred ccccccc----CccccCCCCCCEEEccCCCCcccc-----chhhhcCCCCCEEEccCCcCccc----CCccccCCCCCCE
Q 040974 238 NSVSGSI----PSSLGKLKSLFNLQLKGNQLTGYI-----PSSFRNLTGLLSLLLSQNKLFGS----IPDEIGKMRSLSI 304 (369)
Q Consensus 238 ~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~ 304 (369)
|++..-. ...+..-.+|+.+.+..|.+.... ...+..+.+|+.|++.+|.++.. ....+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 8775211 112223367889999988876431 12335668899999998887632 2234456677889
Q ss_pred EEccCCcCcccCCcc----c--cCCCCCCEEEccCCcccccCCcc------CcC--CCCCEEEccCCeec
Q 040974 305 LDLSQNQFKGVLPPS----V--SNLTNLKELVLLYNNLSGSIPPL------LEN--PMLTQLSLDNNHFT 360 (369)
Q Consensus 305 L~l~~~~i~~~~~~~----l--~~~~~L~~L~l~~n~~~~~~~~~------~~~--~~L~~L~l~~n~~~ 360 (369)
|.+.+|-+....... + ...|+|..|-..+|.+.+.+... .+. |-|..+.++||.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 999888775433221 1 24578888888888665433222 111 55666777777664
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=4.9e-09 Score=98.50 Aligned_cols=179 Identities=25% Similarity=0.252 Sum_probs=119.2
Q ss_pred CccccCCCCCcEEEccCCcCCCCCCccccCC-CCCcEEEeeccccC---CCC---CccCCC---CCCCCEEEccCccccc
Q 040974 125 PPEVGLMSHLMFLYIDTNHLDGSIPPELGQL-SSIVELSLFSNHLN---GSV---PPSLSN---LTDLFILFLQDNSFSG 194 (369)
Q Consensus 125 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~---~~~---~~~l~~---l~~L~~L~l~~~~~~~ 194 (369)
|-.+..+..|++|.+.+|.+.. ..++..+ ..|++|.-.+ ... .++ ...+.+ .-.|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567778899999999988763 2233222 2355554332 111 000 011111 125667777888776
Q ss_pred cCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCc-cccCCCCCCEEEccCCCCccccchhhh
Q 040974 195 FIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPS-SLGKLKSLFNLQLKGNQLTGYIPSSFR 273 (369)
Q Consensus 195 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (369)
....++.-++.++.|+|++|+++... .+..++.|++|||++|.++ .+|. ...++. |+.|++++|.++. ...+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHH
Confidence 45566777888999999999887543 6778899999999999887 4443 333444 8999999998763 23567
Q ss_pred cCCCCCEEEccCCcCcccC-CccccCCCCCCEEEccCCcCc
Q 040974 274 NLTGLLSLLLSQNKLFGSI-PDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~ 313 (369)
++.+|+.|+++.|-+.+-. ...++.+..|+.|.+.+|++.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8889999999998776321 223456788889999999885
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=4.9e-08 Score=73.18 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=81.3
Q ss_pred Ccceeeccccccccc--cCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040974 229 NLNSLHLYGNSVSGS--IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILD 306 (369)
Q Consensus 229 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (369)
.+..++++.|++-.. .+..+.....|+.+++++|.+....+.....++.++.|++++|.++ ..|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455666666654311 1222344566777788888877555555555667788888888877 5677777888888888
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCC
Q 040974 307 LSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 307 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip 364 (369)
++.|++. ..|.-+..+.++-.|+..+|.+....-..+..+..-.+.+.++++.+.-|
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888877 34445555777777777777776333333322222233444445554433
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.11 E-value=9.7e-06 Score=62.38 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCC
Q 040974 76 HDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQL 155 (369)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 155 (369)
+..+|.++++|+.+.+.. .+......+|..+++|+.+.+.++ +.......|.++++|+++.+.. .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344455666666666653 344344555566656666666553 3333334455555555555543 2222223334445
Q ss_pred CCCcEEEeeccccCCCCCccCCCCCCCCEEEcc
Q 040974 156 SSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188 (369)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 188 (369)
++|+.+.+..+ +.......+.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555555432 222233334444 44444443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=8.5e-06 Score=65.49 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=61.9
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCC-CCccCCCCCCCCEEE
Q 040974 108 TNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGS-VPPSLSNLTDLFILF 186 (369)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 186 (369)
.+...+|+++|.+. . .+.|.++++|..|.+++|.++.+.|..-.-+++|..|.+.+|.+... .-..++.||+|++|.
T Consensus 42 d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556677777664 2 22455667777777777777655444444556677777777665432 113355667777777
Q ss_pred ccCccccccC---CcCCcCCCCCcEEEccCC
Q 040974 187 LQDNSFSGFI---PPDIGNSKSMSVLYLSSN 214 (369)
Q Consensus 187 l~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 214 (369)
+-+|.+...- ...+.++|+|+.||++.-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7666654321 123556777777776554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=8.9e-05 Score=67.36 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCC
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN 118 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 118 (369)
..+.|++++|.+. .+|. + -++|++|.+++|.--..+|+.+ .++|++|++++|
T Consensus 53 ~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4556666666443 2221 1 1246666666542212344433 245666666665
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.92 E-value=4.2e-05 Score=58.77 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=52.7
Q ss_pred CcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCC
Q 040974 101 PPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLT 180 (369)
Q Consensus 101 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 180 (369)
..+|..+.+|+.+.+.. .+...-...|.++.+|+.+.+..+ +.......|.++++|+.+.+.+ .+.......+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34566777777777764 344445556666667777777654 4434444566666677777754 33223344555666
Q ss_pred CCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCc
Q 040974 181 DLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNL 230 (369)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (369)
+|+.+.+..+ +.......+.+. +|+.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666543 333333445554 666666554 2222333445555444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=0.00014 Score=66.18 Aligned_cols=136 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCCCccccCCCCC
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH-LDGSIPPELGQLSSI 158 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L 158 (369)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+ .++|++|++++|. +. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 455788999999999887 4552 12469999998876544667655 4689999999884 43 343 357
Q ss_pred cEEEeeccccCCCCCccCCCC-CCCCEEEccCcccc--ccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeec
Q 040974 159 VELSLFSNHLNGSVPPSLSNL-TDLFILFLQDNSFS--GFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHL 235 (369)
Q Consensus 159 ~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (369)
+.|.+..+... .+..+ ++|+.|.+.++... ...+.. -.++|++|++++|... ..|..+. .+|+.|.+
T Consensus 115 e~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCc-----ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 77777654432 12223 24666666433211 001111 1357888888877654 3333333 47788887
Q ss_pred ccc
Q 040974 236 YGN 238 (369)
Q Consensus 236 ~~~ 238 (369)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 665
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=4.1e-05 Score=61.65 Aligned_cols=104 Identities=24% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC-CcccccCCCCcceeec
Q 040974 157 SIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP-IPLSFGNLSNLNSLHL 235 (369)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 235 (369)
+...+++++|.+. ....|..++.|.+|.++.|+|+.+-+..-.-+++|+.|.+.+|++... .-.-+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444555555442 122344455555555555555544333333345555666655554421 1122445556666666
Q ss_pred cccccccccC---ccccCCCCCCEEEccCC
Q 040974 236 YGNSVSGSIP---SSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 236 ~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 262 (369)
-+|.++..-- ..+..+|+|+.||+.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6655542210 11334555666655543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.1e-05 Score=47.56 Aligned_cols=36 Identities=53% Similarity=0.677 Sum_probs=20.3
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 301 SLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 301 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+|++|++++|+++ .++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5566666666666 33434566666666666666665
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.3e-05 Score=47.45 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=13.7
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcC
Q 040974 109 NLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHL 144 (369)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 144 (369)
+|++|++++|.++ .+|..+.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3444444444444 2333344444444444444443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=9.1e-07 Score=66.51 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCEEECCCCcCcccCCcc---ccCCCCCcEEEccCCcCCCCCCccc-cCCCCCcEEEeeccccCCCCCccCCCCCCCC
Q 040974 108 TNLIHLYFGGNQFSGNIPPE---VGLMSHLMFLYIDTNHLDGSIPPEL-GQLSSIVELSLFSNHLNGSVPPSLSNLTDLF 183 (369)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (369)
+.+..++|++|.+- .+++. +.+..+|...++++|.+. ..|+.| ...+.++.|++.+|.+. .+|..++.++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34556666666554 22222 334455666677777666 344444 34446677777777766 4555577777777
Q ss_pred EEEccCccccccCCcCCcCCCCCcEEEccCCcCC
Q 040974 184 ILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
.|+++.|.+. ..++.+..+.++.+|+..+|...
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777777665 34455555666667776666554
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=7.2e-06 Score=80.31 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=52.4
Q ss_pred CCCCEEEccCccccc--cCCcCCcCCCCCcEEEccCCcCCC-CCcccccCCCCcceeeccccccccccCccccCCCCCCE
Q 040974 180 TDLFILFLQDNSFSG--FIPPDIGNSKSMSVLYLSSNKFSG-PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFN 256 (369)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (369)
.+|++|++++...-. +....-..+|.|+.|.+.+-.+.. .......++|+|..||+++..++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666666543210 010111235666666666554432 1223334566666666666665522 34555666666
Q ss_pred EEccCCCCcc-ccchhhhcCCCCCEEEccCCc
Q 040974 257 LQLKGNQLTG-YIPSSFRNLTGLLSLLLSQNK 287 (369)
Q Consensus 257 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 287 (369)
|.+.+-.+.. ..-..+..+++|+.||++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 6665544432 112234455666666665543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.5e-05 Score=78.09 Aligned_cols=132 Identities=21% Similarity=0.276 Sum_probs=55.5
Q ss_pred CCCCEEECCCCcCc-ccCCcccc-CCCCCcEEEccCCcCCCCC-CccccCCCCCcEEEeeccccCCCCCccCCCCCCCCE
Q 040974 108 TNLIHLYFGGNQFS-GNIPPEVG-LMSHLMFLYIDTNHLDGSI-PPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFI 184 (369)
Q Consensus 108 ~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 184 (369)
.+|+.|++++.... ..-|..++ .+|.|+.|.+++-.+.... -....++|+|..||++++.+... .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45555555553321 11122222 3455555555543332111 11223455555555555555422 34445555555
Q ss_pred EEccCccccc-cCCcCCcCCCCCcEEEccCCcCCCCC--c----ccccCCCCcceeeccccccc
Q 040974 185 LFLQDNSFSG-FIPPDIGNSKSMSVLYLSSNKFSGPI--P----LSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 185 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~~~~~~ 241 (369)
|.+.+-.+.. .....+..+++|+.||+|........ . +.-..+|+|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5544433321 11112334555555555554332111 0 11123455555555555443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=9.8e-07 Score=78.22 Aligned_cols=311 Identities=17% Similarity=0.087 Sum_probs=184.6
Q ss_pred CCc-cccceeeCCCCCEEEEEcCCCC--CccccCCcccCCC-CCCCEEeCCCCccc-cc-CCcCCCCCCCCCEEECCCCc
Q 040974 46 SPC-AWYGISCNDAGRVDNITLPAKG--LKGKLHDFSFSLF-PHLAYLDLSYNKLF-GT-IPPQISNLTNLIHLYFGGNQ 119 (369)
Q Consensus 46 ~~c-~~~~~~~~~~~~l~~l~l~~~~--~~~~~~~~~~~~~-~~L~~L~l~~~~l~-~~-~~~~l~~l~~L~~L~l~~~~ 119 (369)
++| .|.+..-+. ..-+++|+.... +.|.+....+.++ ..|+.|.++++.-. +. ....-..+++++.|.+.+|.
T Consensus 97 ~~c~~~n~~AlD~-~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 97 QCCTMWNKLALDG-SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred HHHHHhhhhhhcc-ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 344 455443332 234666665432 2233333334444 36999999998532 22 34445689999999999886
Q ss_pred C-cccCCccc-cCCCCCcEEEccCCc-CCCCCCc-cccCCCCCcEEEeecccc-CCC-CCccCCCCCCCCEEEccCcccc
Q 040974 120 F-SGNIPPEV-GLMSHLMFLYIDTNH-LDGSIPP-ELGQLSSIVELSLFSNHL-NGS-VPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 120 ~-~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
. ++..-..+ ..+++|++|++..|. ++....+ ....+++|++|+++.|.- .+. +.....++..++.+...+|.-.
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 3 22212222 368999999999864 4433333 235789999999999863 221 1223456677777766655211
Q ss_pred ccCCcCC----cCCCCCcEEEccCCc-CCCCC-cccccCCCCcceeecccccc-ccccCcc-ccCCCCCCEEEccCCC-C
Q 040974 194 GFIPPDI----GNSKSMSVLYLSSNK-FSGPI-PLSFGNLSNLNSLHLYGNSV-SGSIPSS-LGKLKSLFNLQLKGNQ-L 264 (369)
Q Consensus 194 ~~~~~~l----~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~-~~~~~~~-l~~~~~L~~L~l~~~~-~ 264 (369)
..+++ ....-+..+++..|. +++.. ...-..+..|+.|..+++.- +...... -.+..+|+.+-+.+++ +
T Consensus 256 --~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 256 --ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred --cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 11111 233445666766663 33222 11223466889999988743 2111112 2467899999999986 3
Q ss_pred ccccchhh-hcCCCCCEEEccCCcCcc--cCCccccCCCCCCEEEccCCcC-cccC----CccccCCCCCCEEEccCCcc
Q 040974 265 TGYIPSSF-RNLTGLLSLLLSQNKLFG--SIPDEIGKMRSLSILDLSQNQF-KGVL----PPSVSNLTNLKELVLLYNNL 336 (369)
Q Consensus 265 ~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i-~~~~----~~~l~~~~~L~~L~l~~n~~ 336 (369)
+..-...+ .+++.|+.+++.++.... .+...-.+++.|+.|.+++|.. ++.. ...-.....|+.+.+++++.
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 32222233 356789999998886531 1223335789999999999864 3331 22234567899999999976
Q ss_pred ccc-CCccCc-CCCCCEEEccCCee
Q 040974 337 SGS-IPPLLE-NPMLTQLSLDNNHF 359 (369)
Q Consensus 337 ~~~-~~~~~~-~~~L~~L~l~~n~~ 359 (369)
... .-..+. ++.|+.+++-+|+-
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhh
Confidence 633 222332 38999999999843
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.22 E-value=9.6e-06 Score=77.33 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=18.7
Q ss_pred CCEEEccCCcCccc-CCccccC-CCCCCEEEccCCccc
Q 040974 302 LSILDLSQNQFKGV-LPPSVSN-LTNLKELVLLYNNLS 337 (369)
Q Consensus 302 L~~L~l~~~~i~~~-~~~~l~~-~~~L~~L~l~~n~~~ 337 (369)
++.|+++.+..... ....... +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 67777777654322 1111111 556666777666443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00021 Score=60.02 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=40.6
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCC--cCcccCCccccCCCCCcEEEccCCcCCC-CCCccccCCC
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN--QFSGNIPPEVGLMSHLMFLYIDTNHLDG-SIPPELGQLS 156 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~ 156 (369)
...+..|+.+++.++.++ . ...|-.+++|++|.++.| .+.+.++.....+++|++|++++|.+.. ....-+..+.
T Consensus 39 ~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 344455555555555443 1 112334556666666666 3333344334445666666666665541 0111123344
Q ss_pred CCcEEEeecccc
Q 040974 157 SIVELSLFSNHL 168 (369)
Q Consensus 157 ~L~~L~l~~~~~ 168 (369)
+|..|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 445555555443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00015 Score=60.88 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCC--cCCCCCCccccCCCCCcEEEeeccccC
Q 040974 105 SNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN--HLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
..+..|+.|.+.+..+++ + ..+..+++|++|.++.| .+.+.+......+++|+++++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334445555555554431 1 12334556666666665 333333333334455555555555543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=2.4e-05 Score=74.55 Aligned_cols=34 Identities=24% Similarity=0.107 Sum_probs=18.0
Q ss_pred CCEEEccCCcccc-cCCccCc--CCCCCEEEccCCee
Q 040974 326 LKELVLLYNNLSG-SIPPLLE--NPMLTQLSLDNNHF 359 (369)
Q Consensus 326 L~~L~l~~n~~~~-~~~~~~~--~~~L~~L~l~~n~~ 359 (369)
++.|++..+.... ..-.... ...++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 6778887775442 1111111 24566667776643
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.06 E-value=0.00029 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.7
Q ss_pred CCCEEEccCCeecccCCCCccC
Q 040974 348 MLTQLSLDNNHFTGYLPHNVCR 369 (369)
Q Consensus 348 ~L~~L~l~~n~~~~~ip~~~~~ 369 (369)
+|++|++++|+++ .||++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4789999999999 89988764
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=6.3e-05 Score=63.61 Aligned_cols=98 Identities=26% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCccc-CCccccCCCCCCEEE
Q 040974 252 KSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGV-LPPSVSNLTNLKELV 330 (369)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~ 330 (369)
.+.+.|++.++.+.+. .....++.|+.|.|+-|.|+...| +..|..|++|.|+.|.|.+. -..-+.++|+|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3456666666666532 234566777777777777753332 46677777777777776532 112345677777777
Q ss_pred ccCCcccccCCccCcC------CCCCEEE
Q 040974 331 LLYNNLSGSIPPLLEN------PMLTQLS 353 (369)
Q Consensus 331 l~~n~~~~~~~~~~~~------~~L~~L~ 353 (369)
|..|+..+..+.-+-. |+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666554443221 6666554
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00029 Score=59.74 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=35.1
Q ss_pred CCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCC-cccccCCCCcceeec
Q 040974 157 SIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPI-PLSFGNLSNLNSLHL 235 (369)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 235 (369)
+.+.|+..+|.+..+ .....++.|+.|.++-|.|+.. ..+..+++|++|+|..|.+.... ...+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 444455555544322 1223445555555555544422 23344455555555555444211 123345555555555
Q ss_pred cccc
Q 040974 236 YGNS 239 (369)
Q Consensus 236 ~~~~ 239 (369)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.11 E-value=0.012 Score=27.32 Aligned_cols=17 Identities=53% Similarity=0.796 Sum_probs=7.8
Q ss_pred CCCCEEEccCCeecccCC
Q 040974 347 PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 347 ~~L~~L~l~~n~~~~~ip 364 (369)
++|++|++++|+++ ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35666666666655 444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.018 Score=28.83 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=4.9
Q ss_pred CcEEEccCCcCC
Q 040974 134 LMFLYIDTNHLD 145 (369)
Q Consensus 134 L~~L~l~~~~~~ 145 (369)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.46 E-value=0.00022 Score=67.04 Aligned_cols=181 Identities=24% Similarity=0.224 Sum_probs=103.9
Q ss_pred CcEEEeeccccCCC----CCccCCCCCCCCEEEccCccccccC----CcCCcCC-CCCcEEEccCCcCCCC----Ccccc
Q 040974 158 IVELSLFSNHLNGS----VPPSLSNLTDLFILFLQDNSFSGFI----PPDIGNS-KSMSVLYLSSNKFSGP----IPLSF 224 (369)
Q Consensus 158 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~ 224 (369)
+..+.+.+|.+... +...+...+.|+.|++++|.+.+.- ...+... +.+++|.+..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777776543 2234556778888888888776331 1222233 5567777777776642 22334
Q ss_pred cCCCCcceeecccccccc----ccCcccc----CCCCCCEEEccCCCCcccc----chhhhcCCC-CCEEEccCCcCccc
Q 040974 225 GNLSNLNSLHLYGNSVSG----SIPSSLG----KLKSLFNLQLKGNQLTGYI----PSSFRNLTG-LLSLLLSQNKLFGS 291 (369)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 291 (369)
...+.++.++++.|.+.. ..+..+. ...++++|++.+|.++... ...+...+. +..+++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456778888888776531 1122222 3456777777777665221 223344444 55577777766532
Q ss_pred ----CCccccCC-CCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcccc
Q 040974 292 ----IPDEIGKM-RSLSILDLSQNQFKGVL----PPSVSNLTNLKELVLLYNNLSG 338 (369)
Q Consensus 292 ----~~~~~~~~-~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~~~~ 338 (369)
....+..+ ..++.++++.|.+++.. ...+..++.++.+.+++|.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11123333 56677777777776432 3344566677777777776654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.02 E-value=0.0023 Score=53.01 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=55.0
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
+..+...+.||++.+++. .....|+.+..|..|+++.+.+. .+|..++....+.++++..|..+ ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 455566666666666554 33444555666666677666665 56666666666667777666665 5666666677777
Q ss_pred EEEeeccccC
Q 040974 160 ELSLFSNHLN 169 (369)
Q Consensus 160 ~L~l~~~~~~ 169 (369)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7776666543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.84 E-value=0.0023 Score=60.33 Aligned_cols=203 Identities=25% Similarity=0.205 Sum_probs=123.9
Q ss_pred CcEEEccCCcCCCCCC----ccccCCCCCcEEEeeccccCCCCC----ccCCCC-CCCCEEEccCcccccc----CCcCC
Q 040974 134 LMFLYIDTNHLDGSIP----PELGQLSSIVELSLFSNHLNGSVP----PSLSNL-TDLFILFLQDNSFSGF----IPPDI 200 (369)
Q Consensus 134 L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~~----~~~~l 200 (369)
+..|.+.+|.+..... ..+...+.|+.|++++|.+..... ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666677666654322 334567889999999988763211 122222 4567777777776643 33445
Q ss_pred cCCCCCcEEEccCCcCCC----CCcccc----cCCCCcceeecccccccccc----CccccCCCC-CCEEEccCCCCccc
Q 040974 201 GNSKSMSVLYLSSNKFSG----PIPLSF----GNLSNLNSLHLYGNSVSGSI----PSSLGKLKS-LFNLQLKGNQLTGY 267 (369)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~~~~~ 267 (369)
.....++.++++.|.+.. ..+..+ ....++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 557778888888887642 112223 34678889999998876321 122334444 66688888887644
Q ss_pred c----chhhhcC-CCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCC
Q 040974 268 I----PSSFRNL-TGLLSLLLSQNKLFGSI----PDEIGKMRSLSILDLSQNQFKGVL----PPSVSNLTNLKELVLLYN 334 (369)
Q Consensus 268 ~----~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n 334 (369)
. ...+... ..++.+++..|.+.+.. ...+..++.++.+.+..|.+.... ...+.....+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 2 2233344 56789999999887543 333456778999999999887432 122334445555666654
Q ss_pred cc
Q 040974 335 NL 336 (369)
Q Consensus 335 ~~ 336 (369)
..
T Consensus 329 ~~ 330 (478)
T KOG4308|consen 329 GK 330 (478)
T ss_pred Cc
Confidence 43
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=0.027 Score=45.82 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCccc-CCcccc-CCCCCcEEEccCCc-CCCCCCccccCCCCCcEEE
Q 040974 86 LAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGN-IPPEVG-LMSHLMFLYIDTNH-LDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 86 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 162 (369)
++.++-+++.|..+-.+.+..++.++.|.+.+|.-.+. --+.++ -.++|+.|++++|. ++...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45556666666555555566666666666666643211 000111 24667777777665 4433334455666666666
Q ss_pred eec
Q 040974 163 LFS 165 (369)
Q Consensus 163 l~~ 165 (369)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.19 E-value=0.035 Score=28.38 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=6.4
Q ss_pred CCCEEEccCCeeccc
Q 040974 348 MLTQLSLDNNHFTGY 362 (369)
Q Consensus 348 ~L~~L~l~~n~~~~~ 362 (369)
+|++|+|++|+++.+
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 455555555555443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=0.052 Score=44.20 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=15.0
Q ss_pred cceeeccccccccccCccccCCCCCCEEEccCC
Q 040974 230 LNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (369)
++.++-+++.+.......+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444444444443344444444444444444
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.31 E-value=0.31 Score=25.37 Aligned_cols=18 Identities=44% Similarity=0.789 Sum_probs=14.2
Q ss_pred CCCCEEEccCCeecccCCC
Q 040974 347 PMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 347 ~~L~~L~l~~n~~~~~ip~ 365 (369)
++|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888887 7776
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.46 E-value=0.88 Score=23.51 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=6.1
Q ss_pred CCCEEECCCCcCc
Q 040974 109 NLIHLYFGGNQFS 121 (369)
Q Consensus 109 ~L~~L~l~~~~~~ 121 (369)
+|++|++.+|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.46 E-value=0.88 Score=23.51 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=6.1
Q ss_pred CCCEEECCCCcCc
Q 040974 109 NLIHLYFGGNQFS 121 (369)
Q Consensus 109 ~L~~L~l~~~~~~ 121 (369)
+|++|++.+|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.32 E-value=0.016 Score=48.19 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=64.7
Q ss_pred CCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCC
Q 040974 104 ISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLF 183 (369)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (369)
+........||++.+.+. .+-..|..+..|..|+++.+.+. ..|+.+.....++.+++.+|... ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 445667778888888766 55556667777888888888776 67777777777777877777766 5677788888888
Q ss_pred EEEccCcccc
Q 040974 184 ILFLQDNSFS 193 (369)
Q Consensus 184 ~L~l~~~~~~ 193 (369)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888777654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.67 E-value=3.4 Score=21.85 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=7.5
Q ss_pred CCCEEEccCCeec
Q 040974 348 MLTQLSLDNNHFT 360 (369)
Q Consensus 348 ~L~~L~l~~n~~~ 360 (369)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666553
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.59 E-value=6.9 Score=20.40 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=8.9
Q ss_pred CCCCEEEccCCccc
Q 040974 324 TNLKELVLLYNNLS 337 (369)
Q Consensus 324 ~~L~~L~l~~n~~~ 337 (369)
.+|+.|++++|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.99 E-value=6.1 Score=37.62 Aligned_cols=63 Identities=24% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCCCcceeecccccccccc--CccccCCCCCCEEEccCCC--Ccccc-chhhhcCCCCCEEEccCCcCc
Q 040974 226 NLSNLNSLHLYGNSVSGSI--PSSLGKLKSLFNLQLKGNQ--LTGYI-PSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~--~~~~~-~~~~~~~~~L~~L~l~~~~~~ 289 (369)
+.+.+..+.+++|++.... ...-...|+|+.|+|++|. +.... ...+++ ..|+.|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 3455556666666554221 1111234666666666662 21110 111222 23566666666554
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.05 E-value=10 Score=19.47 Aligned_cols=11 Identities=45% Similarity=0.347 Sum_probs=6.3
Q ss_pred CCCCEEEccCC
Q 040974 324 TNLKELVLLYN 334 (369)
Q Consensus 324 ~~L~~L~l~~n 334 (369)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.23 E-value=7.5 Score=37.02 Aligned_cols=65 Identities=32% Similarity=0.372 Sum_probs=44.4
Q ss_pred hcCCCCCEEEccCCcCccc--CCccccCCCCCCEEEccCC--cCcccCCcccc--CCCCCCEEEccCCccccc
Q 040974 273 RNLTGLLSLLLSQNKLFGS--IPDEIGKMRSLSILDLSQN--QFKGVLPPSVS--NLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~i~~~~~~~l~--~~~~L~~L~l~~n~~~~~ 339 (369)
.+.+.+..+++++|++... ....-...|+|+.|+|++| .+... ..+. ....|++|-+.||++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4568889999999987532 1222345699999999999 44322 2232 345788999999988754
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.87 E-value=63 Score=30.53 Aligned_cols=180 Identities=20% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCC---CcceeeccccccccccCccccCC---CC
Q 040974 180 TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLS---NLNSLHLYGNSVSGSIPSSLGKL---KS 253 (369)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~l~~~---~~ 253 (369)
+.+++++++.|.+.+..+-.+....+= +.+..|........-+..-. .+.+++++.|.....+|..+..+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Q ss_pred CCEEEccCCCCc---cccchhhhcCCCCCEEEccCCcCc--------ccCCccccCCCCCCEEEccCCcCcccCCccc--
Q 040974 254 LFNLQLKGNQLT---GYIPSSFRNLTGLLSLLLSQNKLF--------GSIPDEIGKMRSLSILDLSQNQFKGVLPPSV-- 320 (369)
Q Consensus 254 L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-- 320 (369)
++.++.++..+. ...+...+.-..+...+++.|... +...+.+..-+++ +|++..+....+-+..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Q ss_pred ----cCCCCCCEEEccCCcccccCCccCcC--CCCCEEEccCCeeccc
Q 040974 321 ----SNLTNLKELVLLYNNLSGSIPPLLEN--PMLTQLSLDNNHFTGY 362 (369)
Q Consensus 321 ----~~~~~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~~~~~ 362 (369)
..-..=-++|++.|...+.-....+. ..+++|.+.+|++.++
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGE 369 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccc
Done!