Query 040974
Match_columns 369
No_of_seqs 243 out of 3166
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.5E-45 2.6E-49 362.4 25.9 351 1-366 2-387 (768)
2 4eco_A Uncharacterized protein 100.0 7.9E-44 2.7E-48 347.6 20.5 347 6-367 25-532 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 6.9E-41 2.4E-45 333.1 22.2 348 5-367 263-772 (876)
4 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-40 1.1E-44 295.0 20.1 291 8-335 3-302 (313)
5 3rgz_A Protein brassinosteroid 100.0 3.9E-39 1.3E-43 321.2 26.7 308 59-366 318-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1.6E-38 5.6E-43 298.9 25.7 306 59-365 30-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 8.5E-37 2.9E-41 288.9 27.9 302 59-361 32-334 (477)
8 3t6q_A CD180 antigen; protein- 100.0 7.9E-35 2.7E-39 283.4 30.2 307 59-367 33-445 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-35 2.9E-39 283.2 29.0 134 59-193 32-166 (606)
10 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.9E-39 273.6 27.1 297 64-365 16-313 (477)
11 3t6q_A CD180 antigen; protein- 100.0 2.3E-34 7.8E-39 280.2 28.7 302 60-364 255-564 (606)
12 3v47_A TOLL-like receptor 5B a 100.0 1.5E-34 5E-39 271.9 24.4 281 84-365 30-388 (455)
13 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-34 1.2E-38 278.9 27.1 307 58-367 55-540 (606)
14 4eco_A Uncharacterized protein 100.0 4.1E-35 1.4E-39 286.1 20.1 302 58-367 205-585 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-33 3.9E-38 272.1 26.1 305 59-367 26-493 (549)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-33 4.7E-38 284.0 27.3 310 48-364 14-397 (844)
17 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4.1E-38 260.4 24.5 291 59-361 45-353 (390)
18 3oja_B Anopheles plasmodium-re 100.0 1.4E-33 4.8E-38 273.7 24.8 292 59-362 51-360 (597)
19 2z63_A TOLL-like receptor 4, v 100.0 3.2E-33 1.1E-37 270.1 27.0 118 248-365 417-536 (570)
20 2z63_A TOLL-like receptor 4, v 100.0 4.8E-33 1.6E-37 268.9 25.8 166 202-368 345-515 (570)
21 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-33 2.2E-37 273.5 27.0 274 59-333 25-362 (680)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-32 3.6E-37 266.0 27.5 297 59-366 52-491 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-33 1.2E-37 267.0 23.7 107 59-169 21-128 (520)
24 4ecn_A Leucine-rich repeat pro 100.0 1.8E-33 6.3E-38 279.9 21.1 302 58-368 447-826 (876)
25 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-32 1.8E-36 266.9 29.6 300 61-361 250-598 (680)
26 2z7x_B TOLL-like receptor 1, v 100.0 8.6E-33 2.9E-37 264.2 23.1 125 62-193 3-128 (520)
27 1ogq_A PGIP-2, polygalacturona 100.0 2E-33 6.7E-38 251.0 17.3 258 109-369 51-313 (313)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-32 9.9E-37 262.9 26.7 295 61-367 33-469 (562)
29 1xku_A Decorin; proteoglycan, 100.0 9.4E-32 3.2E-36 242.1 27.9 287 61-358 33-330 (330)
30 4fcg_A Uncharacterized protein 100.0 2.3E-33 7.8E-38 252.1 17.1 283 6-312 22-313 (328)
31 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-32 1.4E-36 273.2 28.3 296 58-361 47-415 (844)
32 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-31 3.8E-36 241.9 26.9 286 61-358 35-331 (332)
33 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-31 1.4E-35 258.2 31.9 133 60-193 53-186 (635)
34 4fmz_A Internalin; leucine ric 100.0 2.2E-31 7.6E-36 241.4 26.5 280 60-360 67-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 4.2E-31 1.4E-35 239.6 25.9 284 59-364 44-328 (347)
36 1xku_A Decorin; proteoglycan, 100.0 8.9E-31 3.1E-35 235.7 27.6 282 46-335 29-330 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 9.6E-31 3.3E-35 235.7 26.3 281 46-335 31-331 (332)
38 3o6n_A APL1; leucine-rich repe 100.0 7.2E-31 2.5E-35 241.8 24.3 273 81-364 42-334 (390)
39 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-31 1.6E-35 253.9 21.2 167 47-227 3-171 (549)
40 1o6v_A Internalin A; bacterial 100.0 4.1E-30 1.4E-34 242.2 26.0 283 59-361 68-389 (466)
41 1o6v_A Internalin A; bacterial 100.0 3.8E-30 1.3E-34 242.5 25.5 286 59-364 46-370 (466)
42 3oja_B Anopheles plasmodium-re 100.0 5.4E-30 1.9E-34 248.5 24.7 270 82-361 49-338 (597)
43 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-29 1.2E-33 244.6 29.2 150 64-217 36-186 (635)
44 2z80_A TOLL-like receptor 2, v 100.0 2.3E-30 7.7E-35 235.3 16.5 283 43-339 25-316 (353)
45 2z80_A TOLL-like receptor 2, v 100.0 7.8E-30 2.7E-34 231.8 18.6 280 81-364 28-318 (353)
46 2z66_A Variable lymphocyte rec 100.0 1.6E-29 5.5E-34 225.1 18.6 252 46-313 5-261 (306)
47 2z66_A Variable lymphocyte rec 100.0 1E-29 3.6E-34 226.3 16.9 277 87-367 10-294 (306)
48 3bz5_A Internalin-J, INLJ; leu 100.0 5.2E-28 1.8E-32 226.6 27.8 281 59-367 64-394 (457)
49 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-28 2.2E-32 226.0 27.3 275 59-361 42-353 (457)
50 1ozn_A Reticulon 4 receptor; N 100.0 8.7E-29 3E-33 218.1 18.8 224 62-289 14-238 (285)
51 3zyi_A Leucine-rich repeat-con 100.0 8.1E-28 2.8E-32 225.7 26.3 246 62-313 57-303 (452)
52 1ozn_A Reticulon 4 receptor; N 100.0 9.5E-29 3.3E-33 217.8 18.7 267 87-357 14-284 (285)
53 3zyj_A Leucine-rich repeat-con 100.0 1E-27 3.6E-32 224.1 25.9 247 61-313 45-292 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 9.8E-28 3.4E-32 225.1 24.7 227 60-289 76-303 (452)
55 3zyj_A Leucine-rich repeat-con 100.0 1.2E-27 4.1E-32 223.8 25.1 228 59-289 64-292 (440)
56 4fcg_A Uncharacterized protein 100.0 4.7E-28 1.6E-32 217.4 20.0 236 82-337 79-314 (328)
57 3g06_A SSPH2 (leucine-rich rep 100.0 6.3E-27 2.1E-31 225.8 21.5 280 43-367 17-304 (622)
58 2o6q_A Variable lymphocyte rec 99.9 2.9E-26 1E-30 200.2 22.6 217 45-265 2-218 (270)
59 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-29 1.3E-33 223.8 3.4 274 60-348 11-287 (317)
60 1jl5_A Outer protein YOPM; leu 99.9 2.1E-25 7.1E-30 208.7 28.6 254 84-367 131-418 (454)
61 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-30 8.4E-35 243.5 -5.0 304 59-362 56-413 (461)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-28 4.6E-33 220.2 6.3 267 85-365 11-281 (317)
63 1jl5_A Outer protein YOPM; leu 99.9 5.1E-25 1.7E-29 206.1 30.0 272 59-368 91-380 (454)
64 1z7x_W Ribonuclease inhibitor; 99.9 6.2E-30 2.1E-34 240.7 -7.1 307 59-366 28-393 (461)
65 1wwl_A Monocyte differentiatio 99.9 2.3E-28 8E-33 218.1 2.8 250 81-361 40-310 (312)
66 1wwl_A Monocyte differentiatio 99.9 3.4E-28 1.1E-32 217.1 3.8 183 179-365 94-291 (312)
67 3oja_A Leucine-rich immune mol 99.9 2.3E-26 8E-31 217.2 10.5 239 80-332 30-270 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.2E-29 190.0 21.0 221 89-313 12-237 (276)
69 3oja_A Leucine-rich immune mol 99.9 9.7E-26 3.3E-30 213.0 12.5 238 104-355 30-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 3.1E-24 1E-28 188.1 20.8 205 84-289 28-237 (276)
71 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6E-28 182.6 23.4 202 109-313 17-218 (270)
72 3rfs_A Internalin B, repeat mo 99.9 2E-24 6.7E-29 188.8 16.2 222 111-345 22-243 (272)
73 3g06_A SSPH2 (leucine-rich rep 99.9 2E-22 6.8E-27 194.4 29.2 242 84-368 40-281 (622)
74 1p9a_G Platelet glycoprotein I 99.9 8.8E-23 3E-27 179.8 21.8 197 60-264 11-207 (290)
75 3rfs_A Internalin B, repeat mo 99.9 1.8E-23 6.1E-28 182.7 17.0 207 81-322 38-244 (272)
76 1p9a_G Platelet glycoprotein I 99.9 7.4E-23 2.5E-27 180.3 20.7 203 104-313 6-208 (290)
77 2ast_B S-phase kinase-associat 99.9 4.4E-25 1.5E-29 199.0 5.3 268 86-360 49-329 (336)
78 2ast_B S-phase kinase-associat 99.9 2.9E-25 1E-29 200.1 2.4 268 46-322 35-315 (336)
79 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.5E-27 174.1 19.1 190 46-241 3-192 (251)
80 3goz_A Leucine-rich repeat-con 99.9 8.8E-25 3E-29 199.0 4.1 177 64-241 3-209 (362)
81 2ca6_A RAN GTPase-activating p 99.9 3.5E-25 1.2E-29 203.5 -0.8 241 80-340 28-319 (386)
82 2xwt_C Thyrotropin receptor; s 99.9 3.8E-22 1.3E-26 170.9 18.0 197 84-286 31-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 3.6E-25 1.2E-29 203.5 -1.9 241 124-364 24-320 (386)
84 3goz_A Leucine-rich repeat-con 99.9 1.7E-24 5.8E-29 197.1 2.1 281 88-368 2-345 (362)
85 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.8E-27 180.0 14.7 225 109-338 65-308 (310)
86 1h6u_A Internalin H; cell adhe 99.9 4.3E-22 1.5E-26 177.0 16.9 207 90-314 25-231 (308)
87 2xwt_C Thyrotropin receptor; s 99.9 5.1E-22 1.8E-26 170.1 16.2 85 109-193 32-118 (239)
88 4glp_A Monocyte differentiatio 99.9 2.7E-22 9.1E-27 178.7 13.6 227 131-361 63-308 (310)
89 3m19_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 165.8 20.4 180 84-266 14-193 (251)
90 1h6u_A Internalin H; cell adhe 99.9 3.5E-21 1.2E-25 171.1 17.4 195 80-290 37-231 (308)
91 3ogk_B Coronatine-insensitive 99.9 4.3E-24 1.5E-28 207.1 -2.7 301 59-362 164-528 (592)
92 3ogk_B Coronatine-insensitive 99.9 6.6E-24 2.3E-28 205.8 -3.3 301 60-362 139-503 (592)
93 2o6s_A Variable lymphocyte rec 99.9 2.2E-20 7.6E-25 156.4 17.9 186 45-252 4-189 (208)
94 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 3.9E-24 164.4 18.8 244 47-310 8-256 (350)
95 2o6s_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 153.4 15.4 148 112-262 11-158 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.9E-24 163.2 19.0 240 87-334 12-256 (350)
97 2p1m_B Transport inhibitor res 99.8 9.2E-23 3.2E-27 197.8 -5.5 133 227-360 371-519 (594)
98 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 171.2 15.2 203 43-275 38-253 (571)
99 2p1m_B Transport inhibitor res 99.8 8.3E-23 2.9E-27 198.1 -8.6 303 59-362 105-496 (594)
100 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.1E-23 145.8 17.8 160 43-218 14-173 (229)
101 1h6t_A Internalin B; cell adhe 99.8 4.6E-19 1.6E-23 156.1 12.5 171 81-265 43-213 (291)
102 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 168.4 14.7 190 85-290 22-211 (605)
103 2v9t_B SLIT homolog 2 protein 99.8 6.9E-18 2.4E-22 142.3 17.1 151 63-217 15-165 (220)
104 3cvr_A Invasion plasmid antige 99.8 9.7E-18 3.3E-22 159.9 19.1 185 85-297 60-251 (571)
105 1h6t_A Internalin B; cell adhe 99.8 6.2E-18 2.1E-22 148.9 16.1 190 134-339 26-215 (291)
106 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.4E-23 165.7 14.5 174 80-267 39-212 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 7.8E-18 2.7E-22 142.0 15.8 151 87-240 14-164 (220)
108 2xot_A Amphoterin-induced prot 99.8 3.1E-18 1.1E-22 155.6 14.2 176 87-265 21-202 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-18 3E-22 141.7 15.3 153 63-219 15-168 (220)
110 2xot_A Amphoterin-induced prot 99.8 3.9E-18 1.3E-22 154.9 13.8 175 63-241 22-202 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-17 6.2E-22 139.7 16.8 152 87-241 14-166 (220)
112 4b8c_D Glucose-repressible alc 99.8 2E-19 6.8E-24 177.4 3.9 237 6-262 127-369 (727)
113 3e6j_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 138.0 17.4 133 132-265 40-172 (229)
114 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.6E-22 138.1 12.1 129 107-241 43-172 (197)
115 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.4E-22 136.2 13.3 150 180-337 44-194 (197)
116 3sb4_A Hypothetical leucine ri 99.7 6.4E-18 2.2E-22 151.6 9.9 279 60-353 26-327 (329)
117 4fdw_A Leucine rich hypothetic 99.7 7.4E-16 2.5E-20 141.3 23.4 266 81-359 110-382 (401)
118 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.4E-20 139.7 22.9 264 60-337 114-383 (401)
119 1xeu_A Internalin C; cellular 99.7 1.6E-17 5.5E-22 144.0 7.5 147 105-264 38-184 (263)
120 1xeu_A Internalin C; cellular 99.7 8.8E-17 3E-21 139.3 10.6 170 155-339 18-187 (263)
121 3sb4_A Hypothetical leucine ri 99.7 8E-17 2.7E-21 144.4 10.3 276 82-368 23-318 (329)
122 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5.1E-24 173.1 -11.8 121 229-354 442-567 (567)
123 2ell_A Acidic leucine-rich nuc 99.7 3.7E-16 1.3E-20 125.9 9.8 133 203-337 23-160 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 125.0 10.2 84 84-169 24-108 (168)
125 1w8a_A SLIT protein; signaling 99.6 2.8E-15 9.5E-20 123.5 13.5 132 207-341 11-143 (192)
126 1w8a_A SLIT protein; signaling 99.6 5E-15 1.7E-19 122.0 14.7 126 63-192 12-138 (192)
127 1dce_A Protein (RAB geranylger 99.6 2.1E-18 7.1E-23 165.2 -7.1 107 253-364 442-550 (567)
128 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 122.1 7.7 126 84-211 17-147 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6E-19 118.7 15.2 107 84-191 31-137 (193)
130 4b8c_D Glucose-repressible alc 99.6 3.6E-16 1.2E-20 154.2 5.5 180 84-269 173-358 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 118.4 9.3 127 204-332 17-148 (149)
132 4fs7_A Uncharacterized protein 99.6 2.9E-13 9.8E-18 124.3 22.1 282 60-357 72-376 (394)
133 2o6r_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 116.3 13.2 133 206-341 9-141 (177)
134 2o6r_A Variable lymphocyte rec 99.6 5.9E-14 2E-18 113.9 15.4 110 84-193 28-137 (177)
135 2wfh_A SLIT homolog 2 protein 99.6 3.4E-14 1.2E-18 117.0 14.1 127 87-217 13-139 (193)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 114.5 9.5 132 201-337 16-153 (176)
137 4gt6_A Cell surface protein; l 99.5 3E-12 1E-16 117.5 22.0 287 61-360 66-391 (394)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1.1E-18 115.5 7.8 110 80-193 15-126 (176)
139 4fs7_A Uncharacterized protein 99.5 3.1E-12 1E-16 117.4 20.7 277 73-364 60-358 (394)
140 4gt6_A Cell surface protein; l 99.5 1.7E-11 5.9E-16 112.4 23.2 276 74-359 53-369 (394)
141 3g39_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 102.6 12.9 104 62-169 12-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 5.4E-16 1.9E-20 128.5 -10.2 64 103-169 43-106 (198)
143 1ds9_A Outer arm dynein; leuci 99.4 1.7E-15 6E-20 125.4 -7.5 114 223-341 43-157 (198)
144 2r9u_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 101.6 12.9 104 62-169 15-118 (174)
145 3g39_A Variable lymphocyte rec 99.4 6.5E-12 2.2E-16 101.1 12.6 86 132-217 30-115 (170)
146 2r9u_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 100.2 12.6 86 132-217 33-118 (174)
147 3un9_A NLR family member X1; l 99.3 4.1E-14 1.4E-18 128.5 -4.9 157 204-360 101-283 (372)
148 3un9_A NLR family member X1; l 99.3 1.9E-13 6.4E-18 124.1 -3.0 160 203-362 71-254 (372)
149 4h09_A Hypothetical leucine ri 99.2 2.3E-09 7.9E-14 97.7 23.7 262 60-334 47-343 (379)
150 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.9E-15 102.7 11.4 101 65-169 14-116 (347)
151 2ifg_A High affinity nerve gro 99.1 3.7E-10 1.3E-14 101.7 10.9 104 231-337 11-116 (347)
152 4h09_A Hypothetical leucine ri 99.1 2.7E-08 9.1E-13 90.6 21.9 266 80-357 42-343 (379)
153 2ra8_A Uncharacterized protein 98.9 1.2E-09 4E-14 98.4 5.8 200 156-358 107-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.6E-09 5.5E-14 97.5 6.5 84 250-335 250-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.4E-08 1.2E-12 80.2 2.2 115 223-337 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 5.3E-08 1.8E-12 79.1 2.2 114 247-360 31-164 (185)
157 3e4g_A ATP synthase subunit S, 98.3 2E-07 6.8E-12 74.1 2.6 34 229-262 62-95 (176)
158 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 71.6 3.3 83 253-335 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 5.8E-07 2E-11 76.8 2.2 39 251-289 169-209 (267)
160 3rw6_A Nuclear RNA export fact 98.0 3.6E-06 1.2E-10 71.9 4.2 64 3-68 27-99 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 8.8E-05 3E-09 60.0 2.5 85 225-309 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00035 1.2E-08 56.5 3.4 83 251-333 40-135 (197)
163 3rfe_A Platelet glycoprotein I 96.0 0.015 5.2E-07 43.5 6.4 57 255-313 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.018 6.2E-07 43.1 6.8 35 85-119 32-66 (130)
165 2lz0_A Uncharacterized protein 80.0 6.3 0.00022 27.4 6.6 41 99-140 11-51 (100)
166 2lz0_A Uncharacterized protein 79.3 7.7 0.00026 27.0 6.9 42 147-189 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-45 Score=362.45 Aligned_cols=351 Identities=30% Similarity=0.446 Sum_probs=214.3
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccc---cCC
Q 040974 1 FLITVSSESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGK---LHD 77 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~ 77 (369)
|+.+++++.++|++||++|++++.+ +. .+.+|. .+.+||.|.||.|. .++|+.++++++.+.|. ++.
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~-------~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~ 71 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLPD-KN-LLPDWS-------SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSS 71 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCSC-TT-SSTTCC-------TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHHhhCCC-cc-cccCCC-------CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccCh
Confidence 3445666678899999999999984 44 778998 67799999999998 68999999999998876 443
Q ss_pred ----------------------cccCCCCCCCEEeCCCCcccccCCc--CCCCCCCCCEEECCCCcCcccCCccc-cCCC
Q 040974 78 ----------------------FSFSLFPHLAYLDLSYNKLFGTIPP--QISNLTNLIHLYFGGNQFSGNIPPEV-GLMS 132 (369)
Q Consensus 78 ----------------------~~~~~~~~L~~L~l~~~~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 132 (369)
..+.++++|++|++++|.+++..+. .++++++|++|++++|.+.+..|..+ .+++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 1256667777777777777665565 66677777777777776665555544 5666
Q ss_pred CCcEEEccCCcCCCCCCcc---ccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEE
Q 040974 133 HLMFLYIDTNHLDGSIPPE---LGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVL 209 (369)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 209 (369)
+|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+....+. +..+++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence 6666666666666544443 4555666666666665543332 25566666666666666654444 6666666666
Q ss_pred EccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcC-CCCCEEEccCCcC
Q 040974 210 YLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNL-TGLLSLLLSQNKL 288 (369)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 288 (369)
++++|.+.+..+..+..+++|++|++++|.+++..|.. .+++|++|++++|.+.+..|..+... ++|+.|++++|.+
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 66666666555666666666666666666655444432 44555555555555554444444332 5555555555555
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCccCcC-C-CCCEEEccCCeecccCCC
Q 040974 289 FGSIPDEIGKMRSLSILDLSQNQFKGVLPPS-VSNLTNLKELVLLYNNLSGSIPPLLEN-P-MLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~-~-~L~~L~l~~n~~~~~ip~ 365 (369)
.+..|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+.. + +|++|++++|++++.+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 5555555555555555555555555444432 455555555555555555544444433 2 444444444444444444
Q ss_pred C
Q 040974 366 N 366 (369)
Q Consensus 366 ~ 366 (369)
.
T Consensus 387 ~ 387 (768)
T 3rgz_A 387 N 387 (768)
T ss_dssp T
T ss_pred h
Confidence 3
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-44 Score=347.62 Aligned_cols=347 Identities=22% Similarity=0.334 Sum_probs=255.5
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccccC-------CCcCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCCcccc
Q 040974 6 SSESNEEADALLKWKASLQNHNRSLLS-------SWVKDTTNVSSKTSPCAW---YGISCNDAGRVDNITLPAKGLKGKL 75 (369)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~W~~~~~~~~~~~~~c~~---~~~~~~~~~~l~~l~l~~~~~~~~~ 75 (369)
.|++..|++||.+++.++.+++|...+ +|. ...++|.| .||.|...++|+.++|+++.+.|.+
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-------~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-------CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-------CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC
Confidence 455567999999999999998887654 677 67899999 9999988899999999999999999
Q ss_pred CCcccCCCCCCCEEeCCCCcc-----------------------------------------------------------
Q 040974 76 HDFSFSLFPHLAYLDLSYNKL----------------------------------------------------------- 96 (369)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~l----------------------------------------------------------- 96 (369)
|.. +.++++|++|++++|.+
T Consensus 98 p~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 98 PDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp CGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred ChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 976 99999999999998843
Q ss_pred -------------------cccCCcCCCCCCCCCEEECCCCcCccc-----------------CCcccc--CCCCCcEEE
Q 040974 97 -------------------FGTIPPQISNLTNLIHLYFGGNQFSGN-----------------IPPEVG--LMSHLMFLY 138 (369)
Q Consensus 97 -------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~ 138 (369)
++ +|..++++++|++|++++|.+.+. +|..+. ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 33 677889999999999999999875 899988 999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccc-cCC-CCCccCCCC------CCCCEEEccCccccccCCc--CCcCCCCCcE
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNH-LNG-SVPPSLSNL------TDLFILFLQDNSFSGFIPP--DIGNSKSMSV 208 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~ 208 (369)
+++|.+.+.+|..+.++++|++|++++|+ +.+ ..|..+..+ ++|++|++++|.++ .++. .+..+++|++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 99999999999999999999999999998 776 567666655 88888888888888 5666 7888888888
Q ss_pred EEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCC-CCEEEccCCCCccccchhhhcCC--CCCEEEccC
Q 040974 209 LYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKS-LFNLQLKGNQLTGYIPSSFRNLT--GLLSLLLSQ 285 (369)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~ 285 (369)
|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. ..|..+...+ +|+.|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 8888888876666 6667777777777777776 55556666666 777777777666 4444443322 455555555
Q ss_pred CcCcccCCcccc-------------------------------CCCCCCEEEccCCcCcccCCccccCC-------CCCC
Q 040974 286 NKLFGSIPDEIG-------------------------------KMRSLSILDLSQNQFKGVLPPSVSNL-------TNLK 327 (369)
Q Consensus 286 ~~~~~~~~~~~~-------------------------------~~~~L~~L~l~~~~i~~~~~~~l~~~-------~~L~ 327 (369)
|.+.+..|..+. .+++|+.|++++|.+....+..+... ++|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 555444443333 34555555555555542222122211 1556
Q ss_pred EEEccCCcccccCCccCc--C-CCCCEEEccCCeecccCCCCc
Q 040974 328 ELVLLYNNLSGSIPPLLE--N-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 328 ~L~l~~n~~~~~~~~~~~--~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
.|++++|++. .+|..+. . ++|++|++++|++++ +|..+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~ 532 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh
Confidence 6666666555 4444443 2 666666666666664 66554
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-41 Score=333.08 Aligned_cols=348 Identities=21% Similarity=0.339 Sum_probs=258.2
Q ss_pred cCCCCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccc------------cceeeCCCCCEEEEEcCCCCCc
Q 040974 5 VSSESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAW------------YGISCNDAGRVDNITLPAKGLK 72 (369)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~------------~~~~~~~~~~l~~l~l~~~~~~ 72 (369)
.+|.+.+|+.||++|++++.++ +|.....+++...++|.| .||.|...++|+.|+|+++.+.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCC
Confidence 3455678999999999999774 676222111233334899 9999988789999999999999
Q ss_pred cccCCcccCCCCCCCEEeC-CCCccccc----------------------------------------------------
Q 040974 73 GKLHDFSFSLFPHLAYLDL-SYNKLFGT---------------------------------------------------- 99 (369)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l-~~~~l~~~---------------------------------------------------- 99 (369)
|.+|.. +.++++|++|+| ++|.+++.
T Consensus 337 G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 337 GRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 999977 999999999999 66644322
Q ss_pred ------------------------CCcCCCCCCCCCEEECCCCcCcc-----------------cCCcccc--CCCCCcE
Q 040974 100 ------------------------IPPQISNLTNLIHLYFGGNQFSG-----------------NIPPEVG--LMSHLMF 136 (369)
Q Consensus 100 ------------------------~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~ 136 (369)
+|..|.++++|++|+|++|.+.+ .+|..+. ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 67778899999999999999987 3888877 9999999
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEeeccc-cCC-CCCccCC-------CCCCCCEEEccCccccccCCc--CCcCCCC
Q 040974 137 LYIDTNHLDGSIPPELGQLSSIVELSLFSNH-LNG-SVPPSLS-------NLTDLFILFLQDNSFSGFIPP--DIGNSKS 205 (369)
Q Consensus 137 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~--~l~~l~~ 205 (369)
|++++|.+.+.+|..+.++++|++|++++|+ +.+ ..|..+. .+++|++|++++|.+. .+|. .+..+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999988999999999999999999998 765 4555444 4458899999988888 6666 7888888
Q ss_pred CcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCC-CCEEEccCCCCccccchhhhcCC--CCCEEE
Q 040974 206 MSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKS-LFNLQLKGNQLTGYIPSSFRNLT--GLLSLL 282 (369)
Q Consensus 206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~ 282 (369)
|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. ..|..+...+ +|+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 888888888887 666 7788888888888888887 66767777777 888888888776 4454444332 255555
Q ss_pred ccCCcCccc----------------------------CCcc-ccCCCCCCEEEccCCcCcccCCccccC--------CCC
Q 040974 283 LSQNKLFGS----------------------------IPDE-IGKMRSLSILDLSQNQFKGVLPPSVSN--------LTN 325 (369)
Q Consensus 283 l~~~~~~~~----------------------------~~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~--------~~~ 325 (369)
+++|.+.+. .|.. +..+++|+.|++++|.+. .+|..+.. +++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 555544332 2222 235667777777777666 33332221 226
Q ss_pred CCEEEccCCcccccCCccCc--C-CCCCEEEccCCeecccCCCCc
Q 040974 326 LKELVLLYNNLSGSIPPLLE--N-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 326 L~~L~l~~n~~~~~~~~~~~--~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
|+.|+|++|++. .+|..+. . ++|++|++++|++++ ||.++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 777777777776 5555553 2 777777777777774 77655
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-40 Score=295.04 Aligned_cols=291 Identities=30% Similarity=0.525 Sum_probs=202.5
Q ss_pred CCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCccc
Q 040974 8 ESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCA--WYGISCNDA---GRVDNITLPAKGLKG--KLHDFSF 80 (369)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~--~~~~~~~~~---~~l~~l~l~~~~~~~--~~~~~~~ 80 (369)
-.++|+.||++|++++.+ +. .+.+|. .+.++|. |.||.|... ++|+.++++++.+.+ .++.. +
T Consensus 3 c~~~~~~aL~~~k~~~~~-~~-~l~~W~-------~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~-l 72 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGN-PT-TLSSWL-------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-L 72 (313)
T ss_dssp SCHHHHHHHHHHHHHTTC-CG-GGTTCC-------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-G
T ss_pred CCHHHHHHHHHHHHhcCC-cc-cccCCC-------CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh-H
Confidence 467899999999999965 33 568998 5678898 999999854 689999999999887 67765 8
Q ss_pred CCCCCCCEEeCCC-CcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 81 SLFPHLAYLDLSY-NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 81 ~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
.++++|++|++++ +.+.+..|..|.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 8888888888884 788777888888888888888888888877888888888888888888888777777777788888
Q ss_pred EEEeeccccCCCCCccCCCCC-CCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccc
Q 040974 160 ELSLFSNHLNGSVPPSLSNLT-DLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGN 238 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
+|++++|++.+..|..+..++ +|++|++++|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|++|++++|
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 888888777766666676666 677777777766655555555554 666666666655555555555555666666555
Q ss_pred ccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCc
Q 040974 239 SVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPP 318 (369)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 318 (369)
.+++..+. +..+++|++|++++|.+. +..|..+..+++|+.|++++|.+++.+|.
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~------------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIY------------------------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCE------------------------ECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ceeeecCc-ccccCCCCEEECcCCccc------------------------CcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 55433332 344444555555444444 44444444555555555555555544443
Q ss_pred cccCCCCCCEEEccCCc
Q 040974 319 SVSNLTNLKELVLLYNN 335 (369)
Q Consensus 319 ~l~~~~~L~~L~l~~n~ 335 (369)
. ..+++|+.+++++|+
T Consensus 287 ~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-TTGGGSCGGGTCSSS
T ss_pred C-ccccccChHHhcCCC
Confidence 3 445555555555554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-39 Score=321.23 Aligned_cols=308 Identities=37% Similarity=0.605 Sum_probs=251.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCC-------------------------cCCCC--CCCCC
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIP-------------------------PQISN--LTNLI 111 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------------------------~~l~~--l~~L~ 111 (369)
..++.+++++|.+.+.++...+.++++|++|++++|.+++..| ..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 3566666666666555554445555555555555555544444 33333 56677
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcc
Q 040974 112 HLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS 191 (369)
Q Consensus 112 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (369)
+|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 77777777777778888888888888888888887888888888888888888888888888888888889999998888
Q ss_pred ccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchh
Q 040974 192 FSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSS 271 (369)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 271 (369)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 88778888888899999999999888888888888899999999999988888888888999999999988876554433
Q ss_pred ----------------------------------------------------------------------hhcCCCCCEE
Q 040974 272 ----------------------------------------------------------------------FRNLTGLLSL 281 (369)
Q Consensus 272 ----------------------------------------------------------------------~~~~~~L~~L 281 (369)
+..+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 2335678899
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeec
Q 040974 282 LLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFT 360 (369)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~ 360 (369)
++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.||+++|+++|.+|..+.. ++|++|++++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999899999999999999999999999999999999999999999999999999998887 99999999999999
Q ss_pred ccCCCC
Q 040974 361 GYLPHN 366 (369)
Q Consensus 361 ~~ip~~ 366 (369)
|.||+.
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 999964
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-38 Score=298.87 Aligned_cols=306 Identities=25% Similarity=0.281 Sum_probs=261.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCccccc-CCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGT-IPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFL 137 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 137 (369)
.+++.++++++.+.+..+.. |.++++|++|++++|.+.+. .+.+|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 47999999999998765655 99999999999999988644 56789999999999999999998889999999999999
Q ss_pred EccCCcCCCCCCcc--ccCCCCCcEEEeeccccCCCCCcc-CCCCCCCCEEEccCccccccCCcCCcC------------
Q 040974 138 YIDTNHLDGSIPPE--LGQLSSIVELSLFSNHLNGSVPPS-LSNLTDLFILFLQDNSFSGFIPPDIGN------------ 202 (369)
Q Consensus 138 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~------------ 202 (369)
++++|.+++..+.. +..+++|++|++++|.+.+..+.. +.++++|++|++++|.+....+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999988644444 889999999999999998776765 789999999999999988665554433
Q ss_pred ----------------------CCCCcEEEccCCcCCCCCccccc-----------------------------------
Q 040974 203 ----------------------SKSMSVLYLSSNKFSGPIPLSFG----------------------------------- 225 (369)
Q Consensus 203 ----------------------l~~L~~L~l~~~~~~~~~~~~~~----------------------------------- 225 (369)
+++|++|++++|.+.+..+..+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 35788888888866532222111
Q ss_pred ----CCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCC
Q 040974 226 ----NLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRS 301 (369)
Q Consensus 226 ----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 301 (369)
..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 1257899999999998888888999999999999999999888889999999999999999998777888899999
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCC
Q 040974 302 LSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 302 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~ 365 (369)
|+.|++++|.+.+..|..+..+++|++|++++|++.+..+..+.. ++|++|++++|++++.+|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999888888999999999999999999766666655 9999999999999988883
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=288.87 Aligned_cols=302 Identities=22% Similarity=0.161 Sum_probs=271.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.++++++.+.+..+.. |.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 37899999999998665555 99999999999999999988899999999999999999999866666789999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+++..+..|..+++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888889999999999999999988888889999999999999999987666678899999999999999987
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
..+..+..+++|++|++++|...+..+.......+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 77778899999999999998876666666656679999999999999666678899999999999999999777788899
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecc
Q 040974 299 MRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTG 361 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 361 (369)
+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.. ++|++|++++|++..
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999999999888889999999999999999999766666655 899999999999873
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-35 Score=283.42 Aligned_cols=307 Identities=20% Similarity=0.184 Sum_probs=197.7
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.++++++.+.+..+.. |.++++|++|++++|.+++..+++|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 47899999999998655554 99999999999999999888899999999999999999999878888899999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCc--EEEccCCc-
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMS--VLYLSSNK- 215 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~- 215 (369)
+++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.++...+..+..+++|+ .|++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999988866566788888888888888888764434444577788887777766544444444444444 34444333
Q ss_pred --------------------------------------------------------------------------CCCCCc
Q 040974 216 --------------------------------------------------------------------------FSGPIP 221 (369)
Q Consensus 216 --------------------------------------------------------------------------~~~~~~ 221 (369)
+.+..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 222222
Q ss_pred ccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccC---------
Q 040974 222 LSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSI--------- 292 (369)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------- 292 (369)
..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 33455566666666666665 44555566666666666666665544445555555555555555443222
Q ss_pred ------------------CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcc-CcC-CCCCEE
Q 040974 293 ------------------PDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPL-LEN-PMLTQL 352 (369)
Q Consensus 293 ------------------~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~-~~L~~L 352 (369)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +.. ++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 233444445555555555444444444455555555555555555443322 222 555555
Q ss_pred EccCCeecccCCCCc
Q 040974 353 SLDNNHFTGYLPHNV 367 (369)
Q Consensus 353 ~l~~n~~~~~ip~~~ 367 (369)
++++|++++..|+.|
T Consensus 431 ~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 431 NLSHSLLDISSEQLF 445 (606)
T ss_dssp ECTTCCCBTTCTTTT
T ss_pred ECCCCccCCcCHHHH
Confidence 555555554444443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.4e-35 Score=283.22 Aligned_cols=134 Identities=26% Similarity=0.268 Sum_probs=104.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.++++++.+.+..+.. |.++++|++|++++|.+++..+++|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 46888888888887554444 88888888888888888877788888888888888888888866688888888888888
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCC-CCCccCCCCCCCCEEEccCcccc
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
+++|.+++..+..+..+++|++|++++|.+.+ ..|..++++++|++|++++|.++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 88888876665677788888888888887764 34777777777777777777554
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=273.59 Aligned_cols=297 Identities=18% Similarity=0.142 Sum_probs=261.7
Q ss_pred EEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc
Q 040974 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143 (369)
Q Consensus 64 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 143 (369)
++.++..+. .+|.. + .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 16 v~c~~~~l~-~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFV-AVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-cCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 444444443 34443 2 3589999999999998888999999999999999999998889999999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCccc
Q 040974 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLS 223 (369)
Q Consensus 144 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 223 (369)
++...+..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99666667889999999999999998888889999999999999999999888888999999999999999998766677
Q ss_pred ccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040974 224 FGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLS 303 (369)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (369)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.+.+..+..+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 89999999999999999888888899999999999999987766666666667999999999999855446788999999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCC
Q 040974 304 ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 304 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~ 365 (369)
.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+.. ++|++|++++|++++ +|.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 313 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEE 313 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCG
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCH
Confidence 9999999999888888999999999999999999888887776 999999999999984 543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-34 Score=280.17 Aligned_cols=302 Identities=23% Similarity=0.247 Sum_probs=270.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.++++++.+.+..+. .|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 699999999998765444 4999999999999999998 77888999999999999999999777889999999999999
Q ss_pred cCCcCCCCCCc-cccCCCCCcEEEeeccccCCCC--CccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcC
Q 040974 140 DTNHLDGSIPP-ELGQLSSIVELSLFSNHLNGSV--PPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKF 216 (369)
Q Consensus 140 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (369)
++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 99998866554 4889999999999999987654 66789999999999999999888888999999999999999998
Q ss_pred CCCCc-ccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccc---cchhhhcCCCCCEEEccCCcCcccC
Q 040974 217 SGPIP-LSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGY---IPSSFRNLTGLLSLLLSQNKLFGSI 292 (369)
Q Consensus 217 ~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~ 292 (369)
.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 86554 3488999999999999999888888899999999999999998762 2356889999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCC
Q 040974 293 PDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip 364 (369)
+..+..+++|+.|++++|.+++..|..+..++.| .|++++|++++..|..+.. ++|++|++++|+++...+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8899999999999999999998888999999999 9999999999877777666 999999999999986544
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-34 Score=271.92 Aligned_cols=281 Identities=25% Similarity=0.294 Sum_probs=242.4
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcc-cCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSG-NIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 162 (369)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 789999999999998889999999999999999999863 4467899999999999999999988888999999999999
Q ss_pred eeccccCCCCCcc--CCCCCCCCEEEccCccccccCCcC-CcCCCCCcEEEccCCcCCCCCcccccC-------------
Q 040974 163 LFSNHLNGSVPPS--LSNLTDLFILFLQDNSFSGFIPPD-IGNSKSMSVLYLSSNKFSGPIPLSFGN------------- 226 (369)
Q Consensus 163 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~------------- 226 (369)
+++|.+.+..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+.+..+..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999997644444 889999999999999998776665 789999999999999988665554433
Q ss_pred ---------------------CCCcceeeccccccccccCcccc------------------------------------
Q 040974 227 ---------------------LSNLNSLHLYGNSVSGSIPSSLG------------------------------------ 249 (369)
Q Consensus 227 ---------------------~~~L~~L~l~~~~~~~~~~~~l~------------------------------------ 249 (369)
+++|++|++++|.+++..+..+.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 36788888888876543322211
Q ss_pred ---CCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040974 250 ---KLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNL 326 (369)
Q Consensus 250 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L 326 (369)
..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 12589999999999988888889999999999999999998888889999999999999999988888889999999
Q ss_pred CEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCC
Q 040974 327 KELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 327 ~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~ 365 (369)
+.|++++|++.+..|..+.. ++|++|++++|++++ +|.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCcccc-CCH
Confidence 99999999999888887776 999999999999984 554
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-34 Score=278.87 Aligned_cols=307 Identities=20% Similarity=0.174 Sum_probs=187.6
Q ss_pred CCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEE
Q 040974 58 AGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFL 137 (369)
Q Consensus 58 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 137 (369)
..+++.+++++|.+.+..+.. |.++++|++|++++|.+++..|+.|+++++|++|++++|.+.+..+..+.++++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 357888888888777554444 7788888888888888876677778888888888888887775555667777777777
Q ss_pred EccCCcCCC-CCCccccCCCCCcEEEeeccccCCCCCccC----------------------------------------
Q 040974 138 YIDTNHLDG-SIPPELGQLSSIVELSLFSNHLNGSVPPSL---------------------------------------- 176 (369)
Q Consensus 138 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---------------------------------------- 176 (369)
++++|.+++ .+|..+.++++|++|++++|.+.+..+..+
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 777777764 356677777777777777765543322211
Q ss_pred --------------------------------------------------------------------------------
Q 040974 177 -------------------------------------------------------------------------------- 176 (369)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (369)
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence
Q ss_pred ----------CCCCCCCEEEccCccccccCC--------------------cCCcCCCCCcEEEccCCcCCCC-------
Q 040974 177 ----------SNLTDLFILFLQDNSFSGFIP--------------------PDIGNSKSMSVLYLSSNKFSGP------- 219 (369)
Q Consensus 177 ----------~~l~~L~~L~l~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~~~~~------- 219 (369)
..+++|++|++++|.+. .++ ..+..+++|++|++++|.+.+.
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred CccchhhhhccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 11112222222222221 111 0122344455555555544321
Q ss_pred ------------------CcccccCCCCcceeeccccccccccC-ccccCCCCCCEEEccCCCCccccchhhhcCCCCCE
Q 040974 220 ------------------IPLSFGNLSNLNSLHLYGNSVSGSIP-SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLS 280 (369)
Q Consensus 220 ------------------~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 280 (369)
.+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 22334445555555555555554444 34555666666666666666555566666666666
Q ss_pred EEccCCcCcc-cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCe
Q 040974 281 LLLSQNKLFG-SIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNH 358 (369)
Q Consensus 281 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~ 358 (369)
|++++|.+.+ ..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..|..+.. ++|++|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6666666654 24556666677777777777766666666666777777777777776666665554 667777777777
Q ss_pred ecccCCCCc
Q 040974 359 FTGYLPHNV 367 (369)
Q Consensus 359 ~~~~ip~~~ 367 (369)
++ .+|..|
T Consensus 533 l~-~~p~~~ 540 (606)
T 3vq2_A 533 IE-TSKGIL 540 (606)
T ss_dssp CC-CEESCG
T ss_pred Cc-ccCHhH
Confidence 66 566544
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-35 Score=286.12 Aligned_cols=302 Identities=21% Similarity=0.281 Sum_probs=208.5
Q ss_pred CCCEEEEEcCCCCCccc-----------------cCCcccC--CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCC
Q 040974 58 AGRVDNITLPAKGLKGK-----------------LHDFSFS--LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN 118 (369)
Q Consensus 58 ~~~l~~l~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 118 (369)
..+++.+++++|.+.+. +|.. +. ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 45899999999999885 7776 77 9999999999999999899999999999999999999
Q ss_pred c-Ccc-cCCccccCC------CCCcEEEccCCcCCCCCCc--cccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEcc
Q 040974 119 Q-FSG-NIPPEVGLM------SHLMFLYIDTNHLDGSIPP--ELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188 (369)
Q Consensus 119 ~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 188 (369)
. +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 887 788877765 88999999999888 7777 78888889999988888876666 66666777777777
Q ss_pred CccccccCCcCCcCCCC-CcEEEccCCcCCCCCcccccCCC--CcceeeccccccccccCcccc----------------
Q 040974 189 DNSFSGFIPPDIGNSKS-MSVLYLSSNKFSGPIPLSFGNLS--NLNSLHLYGNSVSGSIPSSLG---------------- 249 (369)
Q Consensus 189 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~---------------- 249 (369)
+|.+. .++..+..+++ |++|++++|.+. .+|..+.... +|++|++++|.+.+..|..+.
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 77666 45555666666 666666666655 4444443322 455555555555444444333
Q ss_pred ---------------CCCCCCEEEccCCCCccccchhhhcC-------CCCCEEEccCCcCcccCCcccc--CCCCCCEE
Q 040974 250 ---------------KLKSLFNLQLKGNQLTGYIPSSFRNL-------TGLLSLLLSQNKLFGSIPDEIG--KMRSLSIL 305 (369)
Q Consensus 250 ---------------~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L 305 (369)
.+++|+.|++++|.+.......+... ++|+.|++++|.+. ..|..+. .+++|+.|
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 34555555555555542222222221 15666666666665 4455454 66777777
Q ss_pred EccCCcCcccCCccccCCCCCCEEEc------cCCcccccCCccCcC-CCCCEEEccCCeecccCCCCc
Q 040974 306 DLSQNQFKGVLPPSVSNLTNLKELVL------LYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 306 ~l~~~~i~~~~~~~l~~~~~L~~L~l------~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
++++|.+.+ +|..+..+++|+.|++ ++|++.+.+|..+.. ++|++|++++|++ +.||..+
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 777777765 5666666777777777 345566666666655 7777777777777 4777654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-33 Score=272.07 Aligned_cols=305 Identities=21% Similarity=0.228 Sum_probs=211.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.+++++|.+.+..+.. |.++++|++|++++|++++..+++|..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47999999999988666555 99999999999999999988889999999999999999999977777799999999999
Q ss_pred ccCCcCCC-CCCccccCCCCCcEEEeeccc-cCCCCCccCCCCCCCCEEEccCccccccCCcCCcC--------------
Q 040974 139 IDTNHLDG-SIPPELGQLSSIVELSLFSNH-LNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGN-------------- 202 (369)
Q Consensus 139 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-------------- 202 (369)
+++|.+++ ..+..+.++++|++|++++|. +....+..+.++++|++|++++|.+.+..+..+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999885 345678889999999999987 44334456778888888888888776655554433
Q ss_pred ----------CCCCcEEEccCCcCCCC-----------------------------------------------------
Q 040974 203 ----------SKSMSVLYLSSNKFSGP----------------------------------------------------- 219 (369)
Q Consensus 203 ----------l~~L~~L~l~~~~~~~~----------------------------------------------------- 219 (369)
+++|++|++++|.+.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 34555555555544321
Q ss_pred ------------------------------------------------------------Ccccc-cCCCCcceeecccc
Q 040974 220 ------------------------------------------------------------IPLSF-GNLSNLNSLHLYGN 238 (369)
Q Consensus 220 ------------------------------------------------------------~~~~~-~~~~~L~~L~l~~~ 238 (369)
.|..+ ..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 01111 23556666666666
Q ss_pred ccccccC---ccccCCCCCCEEEccCCCCccccc--hhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 239 SVSGSIP---SSLGKLKSLFNLQLKGNQLTGYIP--SSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 239 ~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
.+++..+ ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 6654432 224556667777777776654322 34666777777777777776 45555666666777777666665
Q ss_pred ccCCcc------------------ccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCCCCc
Q 040974 314 GVLPPS------------------VSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 314 ~~~~~~------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip~~~ 367 (369)
+. +.. ...+++|+.|++++|++. .+|.....++|++|++++|++++.+|+.|
T Consensus 424 ~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 424 VV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred cc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHH
Confidence 22 111 125667777777777776 45543333777777777777776555544
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=284.02 Aligned_cols=310 Identities=21% Similarity=0.222 Sum_probs=196.8
Q ss_pred ccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCccccc-CCcCCCCCCCCCEEECCCCcCcccCCc
Q 040974 48 CAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGT-IPPQISNLTNLIHLYFGGNQFSGNIPP 126 (369)
Q Consensus 48 c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 126 (369)
+.|..+.+ -..+++.+++++|.+.+..+.. |.++++|++|++++|..... .+++|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 35666665 4468999999999988665555 89999999999999854434 478899999999999999999888888
Q ss_pred cccCCCCCcEEEccCCcCCCCCCcc--ccCCCCCcEEEeeccccCCCCC-ccCCCCCCCCEEEccCccccccCCcCCcCC
Q 040974 127 EVGLMSHLMFLYIDTNHLDGSIPPE--LGQLSSIVELSLFSNHLNGSVP-PSLSNLTDLFILFLQDNSFSGFIPPDIGNS 203 (369)
Q Consensus 127 ~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 203 (369)
.|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+....+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999988755554 7889999999999998876544 568889999999999988876655555444
Q ss_pred --CCCcEEEccCCcCCCCCcccccCC------------------------------------------------------
Q 040974 204 --KSMSVLYLSSNKFSGPIPLSFGNL------------------------------------------------------ 227 (369)
Q Consensus 204 --~~L~~L~l~~~~~~~~~~~~~~~~------------------------------------------------------ 227 (369)
++|+.|++++|.+.+..+..+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 455555555555544333333332
Q ss_pred --------------CCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCC
Q 040974 228 --------------SNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIP 293 (369)
Q Consensus 228 --------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (369)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 334444444444444444444444555555555555544444444445555555555555444444
Q ss_pred ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCC
Q 040974 294 DEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip 364 (369)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. +. .++|++|++++|+++ .+|
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCC-CCC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCcc-ccc
Confidence 4444555555555555554443344444455555555555544421 11 234444555555444 444
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=260.44 Aligned_cols=291 Identities=20% Similarity=0.197 Sum_probs=228.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.++++++.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 47888889888765 56666578999999999999999878888999999999999999999977788899999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.++... +..+++|++|++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 9999998544445688999999999999998888888999999999999999887542 3345555555555554331
Q ss_pred ------------------CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCE
Q 040974 219 ------------------PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLS 280 (369)
Q Consensus 219 ------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 280 (369)
..+. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 1111 1235778888888877643 45777888888888888888777888888888888
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeec
Q 040974 281 LLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFT 360 (369)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 360 (369)
|++++|.+.+ .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+. + ....++|++|++++|++.
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEE
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCcc
Confidence 8888888874 4555567888889999888887 4566677788889999998888754 2 222278889999998886
Q ss_pred c
Q 040974 361 G 361 (369)
Q Consensus 361 ~ 361 (369)
.
T Consensus 353 ~ 353 (390)
T 3o6n_A 353 C 353 (390)
T ss_dssp H
T ss_pred c
Confidence 4
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-33 Score=273.66 Aligned_cols=292 Identities=20% Similarity=0.194 Sum_probs=232.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.+++.++.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 35788888888765 55665588999999999999999988888999999999999999999987888889999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.++... +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 9999999655555789999999999999999888888999999999999999887542 3345555555555554432
Q ss_pred ------------------CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCE
Q 040974 219 ------------------PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLS 280 (369)
Q Consensus 219 ------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 280 (369)
..+.. ..++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 11111 12568888888887764 356778889999999999988888888888899999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeec
Q 040974 281 LLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFT 360 (369)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 360 (369)
|++++|.+.+ .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.. ....++|++|++++|++.
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999998874 4555667889999999999888 56667788889999999999887542 222278999999999887
Q ss_pred cc
Q 040974 361 GY 362 (369)
Q Consensus 361 ~~ 362 (369)
+.
T Consensus 359 ~~ 360 (597)
T 3oja_B 359 CN 360 (597)
T ss_dssp HH
T ss_pred Ch
Confidence 53
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=270.12 Aligned_cols=118 Identities=24% Similarity=0.362 Sum_probs=70.5
Q ss_pred ccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc-ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040974 248 LGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF-GSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNL 326 (369)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L 326 (369)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 444455555555555555445555555566666666666554 2445556666666666666666665556666666666
Q ss_pred CEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCC
Q 040974 327 KELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 327 ~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~ 365 (369)
+.|++++|++.+..+..+.. ++|++|++++|++++.+|.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 66666666666555554444 6666666666666666554
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=268.88 Aligned_cols=166 Identities=23% Similarity=0.208 Sum_probs=142.7
Q ss_pred CCCCCcEEEccCCcCCCCC--cccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccc-hhhhcCCCC
Q 040974 202 NSKSMSVLYLSSNKFSGPI--PLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIP-SSFRNLTGL 278 (369)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 278 (369)
.+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4567788888888776433 56678899999999999999865554 8899999999999999886655 578899999
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccC
Q 040974 279 LSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK-GVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDN 356 (369)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~ 356 (369)
+.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++.+..|..+.. ++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999998888888999999999999999997 467888999999999999999999888887776 9999999999
Q ss_pred CeecccCCCCcc
Q 040974 357 NHFTGYLPHNVC 368 (369)
Q Consensus 357 n~~~~~ip~~~~ 368 (369)
|++++..|+.|.
T Consensus 504 n~l~~~~~~~~~ 515 (570)
T 2z63_A 504 NQLKSVPDGIFD 515 (570)
T ss_dssp SCCSCCCTTTTT
T ss_pred CcCCCCCHHHhh
Confidence 999976666553
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-33 Score=273.51 Aligned_cols=274 Identities=22% Similarity=0.242 Sum_probs=178.7
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.++++++.+.+..+. .|.++++|++|++++|.+++..+++|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4788888888888754443 388888888888888888877788888888888888888888755555688888888888
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCc--CCCCCcEEEccCCcC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIG--NSKSMSVLYLSSNKF 216 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 216 (369)
+++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888888766667788888888888888888777777777888888888888877654443322 345666666666655
Q ss_pred CCCCcc---------------------------------------------------cccCCC--Ccceeeccccccccc
Q 040974 217 SGPIPL---------------------------------------------------SFGNLS--NLNSLHLYGNSVSGS 243 (369)
Q Consensus 217 ~~~~~~---------------------------------------------------~~~~~~--~L~~L~l~~~~~~~~ 243 (369)
.+..+. .+..++ +|++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 443332 333332 266777777766666
Q ss_pred cCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcc-----cCC----ccccCCCCCCEEEccCCcCcc
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFG-----SIP----DEIGKMRSLSILDLSQNQFKG 314 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~~~~~~~L~~L~l~~~~i~~ 314 (369)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++...+ ..| ..+..+++|+.|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 66666677777777777776665555555544445444444332110 011 133445555555555555554
Q ss_pred cCCccccCCCCCCEEEccC
Q 040974 315 VLPPSVSNLTNLKELVLLY 333 (369)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~ 333 (369)
..+..+..+++|++|++++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CCTTTTTTCTTCCEEECTT
T ss_pred CChhHhccccCCcEEECCC
Confidence 4444444444444444443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=265.95 Aligned_cols=297 Identities=22% Similarity=0.228 Sum_probs=193.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.+++++|.+.+..+.. |.++++|++|++++|.+++..+++|..+++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 57899999999987554444 899999999999999998888888999999999999999988 55555 789999999
Q ss_pred ccCCcCCCC-CCccccCCCCCcEEEeeccccCCCCCccCCCCCCC--CEEEccCccc--cccCCcCCcCC----------
Q 040974 139 IDTNHLDGS-IPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDL--FILFLQDNSF--SGFIPPDIGNS---------- 203 (369)
Q Consensus 139 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l---------- 203 (369)
+++|.+++. .|..|.++++|++|++++|.+... .+..+++| ++|++++|.+ ....+..+..+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 999998853 357888899999999998887643 23333444 6666666655 22222222111
Q ss_pred -----------------------------------------------------------------------CCCcEEEcc
Q 040974 204 -----------------------------------------------------------------------KSMSVLYLS 212 (369)
Q Consensus 204 -----------------------------------------------------------------------~~L~~L~l~ 212 (369)
++|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 144445555
Q ss_pred CCcCCCCCcccc-----------------------------------------------------cCCCCcceeeccccc
Q 040974 213 SNKFSGPIPLSF-----------------------------------------------------GNLSNLNSLHLYGNS 239 (369)
Q Consensus 213 ~~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~ 239 (369)
+|.+.+..|..+ ..+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 454443333221 455667777777777
Q ss_pred cccccCccccCCCCCCEEEccCCCCccc--cchhhhcCCCCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCcccC
Q 040974 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGY--IPSSFRNLTGLLSLLLSQNKLFGSIP-DEIGKMRSLSILDLSQNQFKGVL 316 (369)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~ 316 (369)
+++..|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 6665666666677777777777766642 23446666777777777777665233 23555666666666666665444
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCCC
Q 040974 317 PPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHN 366 (369)
Q Consensus 317 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~ 366 (369)
+..+. ++|+.|++++|++. .+|..+.. ++|++|++++|+++ .+|..
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 33322 46666666666665 34433323 66666666666666 56654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=267.00 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.+++++|.+.+..+.. |.++++|++|++++|++++..++.|..+++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 35777777777766443333 667777777777777776666667777777777777777766 34444 567777777
Q ss_pred ccCCcCCC-CCCccccCCCCCcEEEeeccccC
Q 040974 139 IDTNHLDG-SIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 139 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
+++|.+++ ..|..+..+++|++|++++|.+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccc
Confidence 77777664 34566666777777777666554
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-33 Score=279.86 Aligned_cols=302 Identities=21% Similarity=0.265 Sum_probs=210.3
Q ss_pred CCCEEEEEcCCCCCcc-----------------ccCCcccC--CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCC
Q 040974 58 AGRVDNITLPAKGLKG-----------------KLHDFSFS--LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGN 118 (369)
Q Consensus 58 ~~~l~~l~l~~~~~~~-----------------~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 118 (369)
..+++.+++++|.+.+ .+|.. +. ++++|++|++++|.+.+.+|..|.++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 3579999999999988 36766 55 9999999999999988889999999999999999999
Q ss_pred c-Ccc-cCCccccCC-------CCCcEEEccCCcCCCCCCc--cccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEc
Q 040974 119 Q-FSG-NIPPEVGLM-------SHLMFLYIDTNHLDGSIPP--ELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFL 187 (369)
Q Consensus 119 ~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 187 (369)
. +.+ .+|..+..+ ++|++|++++|.++ .+|. .+.++++|++|++++|.+. .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 7 776 566655444 48888888888888 6777 7888888888888888877 555 6777788888888
Q ss_pred cCccccccCCcCCcCCCC-CcEEEccCCcCCCCCcccccCCC--Ccceeecccccccccc--------------------
Q 040974 188 QDNSFSGFIPPDIGNSKS-MSVLYLSSNKFSGPIPLSFGNLS--NLNSLHLYGNSVSGSI-------------------- 244 (369)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~-------------------- 244 (369)
++|.+. .++..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+.+..
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 888777 56666777777 777777777766 4444443332 2444444444443322
Q ss_pred --------Ccc-ccCCCCCCEEEccCCCCccccchhhhc-------CCCCCEEEccCCcCcccCCcccc--CCCCCCEEE
Q 040974 245 --------PSS-LGKLKSLFNLQLKGNQLTGYIPSSFRN-------LTGLLSLLLSQNKLFGSIPDEIG--KMRSLSILD 306 (369)
Q Consensus 245 --------~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ 306 (369)
|.. +..+++|+.|++++|.+.......+.. +++|+.|++++|.+. ..|..+. .+++|+.|+
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 222 234566666666666665222222221 226777777777666 4555555 677777777
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccC------CcccccCCccCcC-CCCCEEEccCCeecccCCCCcc
Q 040974 307 LSQNQFKGVLPPSVSNLTNLKELVLLY------NNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPHNVC 368 (369)
Q Consensus 307 l~~~~i~~~~~~~l~~~~~L~~L~l~~------n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~~~~ 368 (369)
+++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+.. ++|++|+|++|++ +.||..+.
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 77777775 566666777777777755 5666667766655 7777777777777 57777653
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-32 Score=266.88 Aligned_cols=300 Identities=24% Similarity=0.264 Sum_probs=163.6
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcc-----cCCc----cccCC
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSG-----NIPP----EVGLM 131 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l 131 (369)
++.+++++|.+.+..+.. +..+++|++|++++|.+++..+..|..+++|++|+++++...+ .+|. .|..+
T Consensus 250 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 666777766665544443 6667777777777776666666666666666666665543221 1121 44555
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccc----------------------------cCCCCCccCCCCCCCC
Q 040974 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNH----------------------------LNGSVPPSLSNLTDLF 183 (369)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------------------~~~~~~~~l~~l~~L~ 183 (369)
++|++|++++|.+++..+..|..+++|++|++++|. +.+..+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 666666666666665555555555555555555443 2222334444455555
Q ss_pred EEEccCccccccCC-cCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccc--cccCccccCCCCCCEEEcc
Q 040974 184 ILFLQDNSFSGFIP-PDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVS--GSIPSSLGKLKSLFNLQLK 260 (369)
Q Consensus 184 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~ 260 (369)
+|++++|.+...++ ..+..+++|++|++++|.+....+..+..++.|+.|++++|.+. +..|..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 55555555443222 34444555555555555444333334444444555555444443 2344455556666666666
Q ss_pred CCCCccccchhhhcCCCCCEEEccCCcCcccCC--------ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 040974 261 GNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIP--------DEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLL 332 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~ 332 (369)
+|.+++..+..+.++++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 666665555556666666666666666553211 124555666666666666664433455666666666666
Q ss_pred CCcccccCCccCcC-CCCCEEEccCCeecc
Q 040974 333 YNNLSGSIPPLLEN-PMLTQLSLDNNHFTG 361 (369)
Q Consensus 333 ~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 361 (369)
+|++++..+..+.. ++|++|++++|++++
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 66666444444433 666666666666664
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-33 Score=264.22 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=110.5
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 62 DNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 62 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
+.++++++.+. .+|.. +. ++|++|++++|.+++..++.|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57899999988 56655 33 8999999999999977778899999999999999999988899999999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccCC-CCCccCCCCCCCCEEEccCcccc
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLNG-SVPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
|.++ .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 9998 55655 79999999999999986 36788999999999999988765
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-33 Score=251.00 Aligned_cols=258 Identities=29% Similarity=0.481 Sum_probs=174.6
Q ss_pred CCCEEECCCCcCcc--cCCccccCCCCCcEEEccC-CcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEE
Q 040974 109 NLIHLYFGGNQFSG--NIPPEVGLMSHLMFLYIDT-NHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFIL 185 (369)
Q Consensus 109 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 185 (369)
+++.|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444443 3444444455555555542 44444444445555555555555555544445555555555555
Q ss_pred EccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCC-CcceeeccccccccccCccccCCCCCCEEEccCCCC
Q 040974 186 FLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLS-NLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQL 264 (369)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (369)
++++|.+.+..+..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+++..|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555545555555566666666666666555555666665 677777777777666666666665 78888888877
Q ss_pred ccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccC
Q 040974 265 TGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLL 344 (369)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 344 (369)
.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 777777777888888888888888754444 6778999999999999998899999999999999999999999999884
Q ss_pred cCCCCCEEEccCCe-ecccCCCCccC
Q 040974 345 ENPMLTQLSLDNNH-FTGYLPHNVCR 369 (369)
Q Consensus 345 ~~~~L~~L~l~~n~-~~~~ip~~~~~ 369 (369)
..++|+++++++|+ +.| .|...|+
T Consensus 289 ~l~~L~~l~l~~N~~lc~-~p~~~C~ 313 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG-SPLPACT 313 (313)
T ss_dssp TGGGSCGGGTCSSSEEES-TTSSCCC
T ss_pred cccccChHHhcCCCCccC-CCCCCCC
Confidence 44999999999997 554 4544553
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-32 Score=262.89 Aligned_cols=295 Identities=23% Similarity=0.237 Sum_probs=237.7
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
.+.++++++.+.+ +|.. + .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4899999999885 6654 3 2899999999999998788899999999999999999998889999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEeeccccCCC-CCccCCCCCCCCEEEccCccccccCCcCCcCCCCC--cEEEccCCcC-
Q 040974 141 TNHLDGSIPPELGQLSSIVELSLFSNHLNGS-VPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSM--SVLYLSSNKF- 216 (369)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~- 216 (369)
+|.++ .+|.. .+++|++|++++|++.+. .|..++++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99998 56655 799999999999999864 457899999999999999998753 34455555 9999999987
Q ss_pred -CCCCcccccCCC-------------------------------------------------------------------
Q 040974 217 -SGPIPLSFGNLS------------------------------------------------------------------- 228 (369)
Q Consensus 217 -~~~~~~~~~~~~------------------------------------------------------------------- 228 (369)
.+..+..+..+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 444444333321
Q ss_pred --------------CcceeeccccccccccCccc----------------------------------------------
Q 040974 229 --------------NLNSLHLYGNSVSGSIPSSL---------------------------------------------- 248 (369)
Q Consensus 229 --------------~L~~L~l~~~~~~~~~~~~l---------------------------------------------- 248 (369)
+|++|++++|.+++.+|..+
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 67777777777765555443
Q ss_pred -------cCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCccc--CCccccCCCCCCEEEccCCcCcccCC-c
Q 040974 249 -------GKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGS--IPDEIGKMRSLSILDLSQNQFKGVLP-P 318 (369)
Q Consensus 249 -------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~-~ 318 (369)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+.+| .
T Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 5667888888888888877778888888999999998888752 24557788899999999998886344 4
Q ss_pred cccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCCCCc
Q 040974 319 SVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 319 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip~~~ 367 (369)
.+..+++|+.|++++|++.+..+..+. ++|++|++++|+++ .||..+
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhh
Confidence 577888999999999988877666554 68999999999888 788765
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9.4e-32 Score=242.14 Aligned_cols=287 Identities=22% Similarity=0.307 Sum_probs=238.2
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
++.++++++.+. .+|.. + .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 455666666654 34433 2 3689999999999998878889999999999999999997789999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccc--cCCcCCcCCCCCcEEEccCCcCCC
Q 040974 141 TNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSG--FIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+|.++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 5565544 799999999999988777889999999999999998863 566778899999999999999874
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
.+..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. ..|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 444333 79999999999999888888999999999999999999877778999999999999999998 67778889
Q ss_pred CCCCCEEEccCCcCcccCCccccC------CCCCCEEEccCCcccc--cCCccCcC-CCCCEEEccCCe
Q 040974 299 MRSLSILDLSQNQFKGVLPPSVSN------LTNLKELVLLYNNLSG--SIPPLLEN-PMLTQLSLDNNH 358 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~~~~--~~~~~~~~-~~L~~L~l~~n~ 358 (369)
+++|+.|++++|++++..+..+.. .+.++.+++++|++.. ..|..+.+ .+++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999998766555533 4789999999998863 34455555 899999999985
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.3e-33 Score=252.07 Aligned_cols=283 Identities=19% Similarity=0.237 Sum_probs=169.8
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccccceeeCC---------CCCEEEEEcCCCCCccccC
Q 040974 6 SSESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCND---------AGRVDNITLPAKGLKGKLH 76 (369)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~ 76 (369)
.+....++.||++|+..+.+++.+....|.... ....++|.|.|+.|.. ..+++.++++++.+. .++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 455567899999999999877766677894111 1467889999999842 246666666666665 444
Q ss_pred CcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCC
Q 040974 77 DFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLS 156 (369)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 156 (369)
.. +.++++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|...+.+|..+..
T Consensus 98 ~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-- 172 (328)
T 4fcg_A 98 DQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-- 172 (328)
T ss_dssp SC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE--
T ss_pred hh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh--
Confidence 44 555666666666666666 55666666666666666666666 55666666666666666665555555544432
Q ss_pred CCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecc
Q 040974 157 SIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLY 236 (369)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (369)
. .....+.++++|++|++++|.++ .++..+..+++|++|++++|.+.+ .+..+..+++|++|+++
T Consensus 173 ----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 173 ----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred ----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 0 00011223555555555555554 344445555555555555555552 33345555666666666
Q ss_pred ccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 040974 237 GNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQF 312 (369)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 312 (369)
+|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.+++..+.+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6555555555556666666666666655555555566666666666666666556666666666666666555433
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=273.21 Aligned_cols=296 Identities=21% Similarity=0.237 Sum_probs=244.6
Q ss_pred CCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCcc--ccCCCCCc
Q 040974 58 AGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPE--VGLMSHLM 135 (369)
Q Consensus 58 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~ 135 (369)
...++.+++++|...+.++...|.++++|++|+|++|.+++..|++|.++++|++|++++|.+.+..+.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 4579999999998777886666999999999999999999888999999999999999999998756654 88999999
Q ss_pred EEEccCCcCCCCCC-ccccCCCCCcEEEeeccccCCCCCccCCCC--CC------------------------------C
Q 040974 136 FLYIDTNHLDGSIP-PELGQLSSIVELSLFSNHLNGSVPPSLSNL--TD------------------------------L 182 (369)
Q Consensus 136 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~------------------------------L 182 (369)
+|++++|.+++..+ ..|.++++|++|++++|.+.+..+..+..+ ++ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999886654 578899999999999998876555444332 23 6
Q ss_pred CEEEccCccccccCCcCC------------------------------------cC--CCCCcEEEccCCcCCCCCcccc
Q 040974 183 FILFLQDNSFSGFIPPDI------------------------------------GN--SKSMSVLYLSSNKFSGPIPLSF 224 (369)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~~~~~~~ 224 (369)
+.|++++|.+....+..+ .. .++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 666666664432221111 11 2578888888888876667788
Q ss_pred cCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040974 225 GNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSI 304 (369)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (369)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 99999999999999999888888999999999999999999888889999999999999999998777778899999999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecc
Q 040974 305 LDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTG 361 (369)
Q Consensus 305 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 361 (369)
|++++|.+.+. ..+++|+.+++++|++. .+|.. ..+++.+++++|++++
T Consensus 367 L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 367 LDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLEN 415 (844)
T ss_dssp EEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCS
T ss_pred EECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc--ccccceeecccCcccc
Confidence 99999999843 23789999999999998 44443 2679999999999874
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-31 Score=241.89 Aligned_cols=286 Identities=24% Similarity=0.315 Sum_probs=240.6
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
++.++++++.+. .+|.. + .++|++|++++|.+++..++.|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 456677777665 45543 2 3789999999999997888899999999999999999998889999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccc--cCCcCCcCCCCCcEEEccCCcCCC
Q 040974 141 TNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSG--FIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+|.++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+ +|++|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 5665554 799999999999997777789999999999999999863 566677777 99999999999885
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
.|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. ..|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 444433 79999999999999887788999999999999999999887888999999999999999998 67777899
Q ss_pred CCCCCEEEccCCcCcccCCccccC------CCCCCEEEccCCccc--ccCCccCcC-CCCCEEEccCCe
Q 040974 299 MRSLSILDLSQNQFKGVLPPSVSN------LTNLKELVLLYNNLS--GSIPPLLEN-PMLTQLSLDNNH 358 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~~~~-~~L~~L~l~~n~ 358 (369)
+++|+.|++++|.+++..+..+.. .+.|+.|++++|++. +..+..+.. ++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999998766655544 467999999999987 455555655 999999999985
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-31 Score=258.23 Aligned_cols=133 Identities=27% Similarity=0.305 Sum_probs=118.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.++|++|.+.+ ++...|.++++|++|+|++|++++..+++|.++++|++|+|++|.+.+..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 79999999999974 45555999999999999999999888899999999999999999999777778999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCC-CCccCCCCCCCCEEEccCcccc
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGS-VPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|++++|.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999976667789999999999999998754 5677888999999999887654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-31 Score=241.39 Aligned_cols=280 Identities=24% Similarity=0.351 Sum_probs=163.8
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
+++.++++++.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++. +..+++|++|++
T Consensus 67 ~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNL 139 (347)
T ss_dssp TCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEEC
Confidence 45666666655543221 55566666666666655432 235556666666666665552 222 555666666666
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
++|...... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.... .+..+++|+.+++++|.+.+.
T Consensus 140 ~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 140 GANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCC
Confidence 665433222 235556666666666665543222 555666666666666655322 155566666666666665533
Q ss_pred CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCC
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKM 299 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (369)
.+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 22 5566677777777776654332 56667777777777766642 3466667777777777766543 345666
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeec
Q 040974 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFT 360 (369)
Q Consensus 300 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 360 (369)
++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..| ....++|++|++++|+++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 777777777777766666666677777777777777765444 222367777777777664
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-31 Score=239.59 Aligned_cols=284 Identities=25% Similarity=0.436 Sum_probs=241.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.++++++.+.. ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+.++++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~~--~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQG--IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-chh--hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 479999999998863 333 88899999999999999854 33 8899999999999999884 44 689999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.... .+..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCcccc
Confidence 999998843 43 889999999999999765444 44889999999999999887543 37889999999999999875
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 433 7889999999999999875543 7889999999999999985544 88899999999999998753 45788
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCC
Q 040974 299 MRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip 364 (369)
+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+..+..+.. ++|++|++++|++++..|
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 99999999999999854 46889999999999999999887777766 999999999999986555
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.9e-31 Score=235.75 Aligned_cols=282 Identities=21% Similarity=0.254 Sum_probs=239.0
Q ss_pred CCccccceeeCC----------CCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEEC
Q 040974 46 SPCAWYGISCND----------AGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYF 115 (369)
Q Consensus 46 ~~c~~~~~~~~~----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 115 (369)
..|.|+.+.|+. ...++.++++++.+.+..+.. |.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 346788888863 237899999999988654444 999999999999999999888999999999999999
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCC--CCCccCCCCCCCCEEEccCcccc
Q 040974 116 GGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNG--SVPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 5666553 899999999999997777778999999999999998853 56778899999999999999988
Q ss_pred ccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhh
Q 040974 194 GFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFR 273 (369)
Q Consensus 194 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (369)
. ++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..|..+.
T Consensus 185 ~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 5 44433 389999999999998777788999999999999999999887778999999999999999998 6777889
Q ss_pred cCCCCCEEEccCCcCcccCCccccC------CCCCCEEEccCCcCcc--cCCccccCCCCCCEEEccCCc
Q 040974 274 NLTGLLSLLLSQNKLFGSIPDEIGK------MRSLSILDLSQNQFKG--VLPPSVSNLTNLKELVLLYNN 335 (369)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~i~~--~~~~~l~~~~~L~~L~l~~n~ 335 (369)
.+++|+.|++++|.+.+..+..|.. .+.++.|++++|++.. ..|..+..+++++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999998665555543 4789999999999863 456788889999999999985
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.6e-31 Score=235.74 Aligned_cols=281 Identities=23% Similarity=0.269 Sum_probs=238.4
Q ss_pred CCccccceeeCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEEC
Q 040974 46 SPCAWYGISCNDA----------GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYF 115 (369)
Q Consensus 46 ~~c~~~~~~~~~~----------~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 115 (369)
..|.|+.+.|+.. ..++.++++++.+.+..+.. |.++++|++|++++|.+++..+.+|.++++|++|++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3468888888632 37999999999988555544 999999999999999999888999999999999999
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCC--CCCccCCCCCCCCEEEccCcccc
Q 040974 116 GGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNG--SVPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
++|.+. .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 5666554 899999999999996666678999999999999999853 667777777 9999999999988
Q ss_pred ccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhh
Q 040974 194 GFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFR 273 (369)
Q Consensus 194 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (369)
. ++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. ..|..+.
T Consensus 186 ~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 5 44443 378999999999999777788999999999999999999877778999999999999999998 6777799
Q ss_pred cCCCCCEEEccCCcCcccCCccccC------CCCCCEEEccCCcCc--ccCCccccCCCCCCEEEccCCc
Q 040974 274 NLTGLLSLLLSQNKLFGSIPDEIGK------MRSLSILDLSQNQFK--GVLPPSVSNLTNLKELVLLYNN 335 (369)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~i~--~~~~~~l~~~~~L~~L~l~~n~ 335 (369)
.+++|+.|++++|.+.+..+..+.. .+.|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999999998665555543 477999999999987 5677788999999999999885
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.2e-31 Score=241.84 Aligned_cols=273 Identities=21% Similarity=0.157 Sum_probs=222.4
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
..+++++.++++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999999998666666889999999999999999777889999999999999999999877888999999999
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcce--------
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNS-------- 232 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-------- 232 (369)
|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.... +..+++|+.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 999999998666666789999999999999999877888999999999999999887542 333444544
Q ss_pred -----------eeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCC
Q 040974 233 -----------LHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRS 301 (369)
Q Consensus 233 -----------L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 301 (369)
|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred cccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 4555554442211 1236788888888888753 46788899999999999988777888888999
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCC
Q 040974 302 LSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 302 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip 364 (369)
|+.|++++|.+.+ ++..+..+++|+.|++++|++.+ +|..+.. ++|++|++++|+++ .+|
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~-~~~ 334 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK 334 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC-CCC
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccc-eeC
Confidence 9999999999884 45556778999999999998874 4444433 89999999999987 444
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.6e-31 Score=253.92 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=138.4
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCc
Q 040974 47 PCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPP 126 (369)
Q Consensus 47 ~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 126 (369)
.|.|.++ | +.+++.++ .+|.. + .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c---------~~~~~~l~-~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C---------DGRSRSFT-SIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E---------ECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E---------ECCCCccc-ccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3677766 5 34455554 45544 2 27899999999999988889999999999999999999988889
Q ss_pred cccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCC-CCccCCCCCCCCEEEccCcc-ccccCCcCCcCCC
Q 040974 127 EVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGS-VPPSLSNLTDLFILFLQDNS-FSGFIPPDIGNSK 204 (369)
Q Consensus 127 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~ 204 (369)
.|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+.++++|++|++++|. +....+..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 999999999999999999977766799999999999999998753 46778999999999999998 4444456789999
Q ss_pred CCcEEEccCCcCCCCCcccccCC
Q 040974 205 SMSVLYLSSNKFSGPIPLSFGNL 227 (369)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~ 227 (369)
+|++|++++|.+.+..+..+..+
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTC
T ss_pred ccCeeeccCCcccccChhhhhcc
Confidence 99999999998876555555443
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4.1e-30 Score=242.20 Aligned_cols=283 Identities=28% Similarity=0.379 Sum_probs=180.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.++++++.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++. +.++++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence 478888888888765433 7778888888888887774433 7778888888888877763 332 66677777777
Q ss_pred ccCCcCCCCC-------------------CccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCC--
Q 040974 139 IDTNHLDGSI-------------------PPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIP-- 197 (369)
Q Consensus 139 l~~~~~~~~~-------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-- 197 (369)
+++|.+.+.. ...+..+++|++|++++|.+... ..+..+++|++|++++|.+....+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGG
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccccc
Confidence 7766654311 01244556666666666665432 235555666666666655543221
Q ss_pred ------------------cCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEc
Q 040974 198 ------------------PDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQL 259 (369)
Q Consensus 198 ------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (369)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 233444555555555555543222 4555666666666666553322 556666667777
Q ss_pred cCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc
Q 040974 260 KGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~ 339 (369)
++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 6666664333 5667777777777777765443 56677888888888877744 3577888888888888888876
Q ss_pred CCccCcCCCCCEEEccCCeecc
Q 040974 340 IPPLLENPMLTQLSLDNNHFTG 361 (369)
Q Consensus 340 ~~~~~~~~~L~~L~l~~n~~~~ 361 (369)
.| ....++|++|++++|++++
T Consensus 369 ~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 369 TP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GG-GTTCTTCCEEECCCEEEEC
T ss_pred ch-hhcCCCCCEEeccCCcccC
Confidence 66 3333888888888888875
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.8e-30 Score=242.45 Aligned_cols=286 Identities=28% Similarity=0.433 Sum_probs=193.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.+++.++.+.. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +. +.++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEE
Confidence 368999999998763 443 7889999999999999985543 89999999999999999844 43 89999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCC-------------------ccCCCCCCCCEEEccCccccccCCcC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVP-------------------PSLSNLTDLFILFLQDNSFSGFIPPD 199 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~l~~l~~L~~L~l~~~~~~~~~~~~ 199 (369)
+++|.+++. +. +..+++|++|++++|.+..... ..+.++++|++|++++|.+... ..
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence 999998854 33 8899999999999998764211 2256778899999999988743 45
Q ss_pred CcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccc----------
Q 040974 200 IGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIP---------- 269 (369)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---------- 269 (369)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 270 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEE
Confidence 7788889999998888775433 44566666666666665432 234445555555555555543322
Q ss_pred ----------hhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc
Q 040974 270 ----------SSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 270 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~ 339 (369)
..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 271 ~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 271 KLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 013444455555555554443221 4455556666666665554332 45566666666666666543
Q ss_pred CCccCcCCCCCEEEccCCeecccCC
Q 040974 340 IPPLLENPMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 340 ~~~~~~~~~L~~L~l~~n~~~~~ip 364 (369)
+.....++|++|++++|++++.+|
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred -hhhccCCCCCEEeCCCCccCccch
Confidence 222222677777777777765554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.4e-30 Score=248.49 Aligned_cols=270 Identities=20% Similarity=0.160 Sum_probs=223.1
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 040974 82 LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVEL 161 (369)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 161 (369)
.+++++.++++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999987777778899999999999999998888899999999999999999998878888999999999
Q ss_pred EeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccc---
Q 040974 162 SLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGN--- 238 (369)
Q Consensus 162 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--- 238 (369)
++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+.. +..++.|+.|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999776667899999999999999999888888999999999999999887542 333445555555554
Q ss_pred ----------------ccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCC
Q 040974 239 ----------------SVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSL 302 (369)
Q Consensus 239 ----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (369)
.+....+. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 44322211 13578888888888875 3567888999999999999988778888889999
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecc
Q 040974 303 SILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTG 361 (369)
Q Consensus 303 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~ 361 (369)
+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+.. ++|++|++++|++++
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 999999999885 4556677889999999999888 45554444 899999999999873
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.6e-29 Score=244.58 Aligned_cols=150 Identities=22% Similarity=0.181 Sum_probs=128.0
Q ss_pred EEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCc
Q 040974 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH 143 (369)
Q Consensus 64 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 143 (369)
++.++.+++ .+|.. +. +++++|+|++|+++...+.+|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 36 ~~c~~~~l~-~vP~~-lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFY-KIPDN-LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCS-SCCSS-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcC-ccCCC-CC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 445555554 44543 21 479999999999998888899999999999999999997788889999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccccc-CCcCCcCCCCCcEEEccCCcCC
Q 040974 144 LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF-IPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 144 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
+++..+..|.++++|++|++++|++.+..+..++++++|++|++++|.++.. .+..+..+++|++|++++|.+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9976667899999999999999999987777899999999999999998754 4667788999999999887653
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=235.30 Aligned_cols=283 Identities=20% Similarity=0.204 Sum_probs=181.0
Q ss_pred CCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcc
Q 040974 43 SKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSG 122 (369)
Q Consensus 43 ~~~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 122 (369)
.+...|.|.++ | +++++.+. .+|.. + .++|++|++++|++++..++.|.++++|++|++++|.+.+
T Consensus 25 ~~~~~C~~~~~-c---------~~~~~~l~-~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 25 QASLSCDRNGI-C---------KGSSGSLN-SIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp --CCEECTTSE-E---------ECCSTTCS-SCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccCCCCCCCeE-e---------eCCCCCcc-ccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 45566777664 3 34455554 34433 2 2478888888888876666678888888888888888876
Q ss_pred cCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCC-ccCCCCCCCCEEEccCc-cccccCCcCC
Q 040974 123 NIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVP-PSLSNLTDLFILFLQDN-SFSGFIPPDI 200 (369)
Q Consensus 123 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~~~l 200 (369)
..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++..... ..+.++++|++|++++| .+....+..+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 667777888888888888888774444446777888888888877764443 45677777777777776 3554455566
Q ss_pred cCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhh---hcCCC
Q 040974 201 GNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSF---RNLTG 277 (369)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~ 277 (369)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 677777777777777765556667777777777777776653333333446677777777776664433222 22345
Q ss_pred CCEEEccCCcCcc----cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc
Q 040974 278 LLSLLLSQNKLFG----SIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 278 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~ 339 (369)
++.+++.++.+.+ ..|..+..+++|+.|++++|.+++.....+..+++|++|++++|++.+.
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 5666666665543 2344455666667777766666633333345666666777766666544
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=231.76 Aligned_cols=280 Identities=17% Similarity=0.170 Sum_probs=234.4
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
..|+.....+++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34566667888999888 5566544 58999999999999777778999999999999999999877888999999999
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCC-cCCcCCCCCcEEEccCCc-CCCCCcccccCCCCcceeecccc
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIP-PDIGNSKSMSVLYLSSNK-FSGPIPLSFGNLSNLNSLHLYGN 238 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++++|.+.+..+..+.++++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999987666668999999999999999986544 478899999999999994 55555677889999999999999
Q ss_pred ccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccc---cCCCCCCEEEccCCcCcc-
Q 040974 239 SVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEI---GKMRSLSILDLSQNQFKG- 314 (369)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~- 314 (369)
.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ .....++.++++++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9998888899999999999999999975555556678999999999999886443322 346788999999998875
Q ss_pred ---cCCccccCCCCCCEEEccCCcccccCCcc-CcC-CCCCEEEccCCeecccCC
Q 040974 315 ---VLPPSVSNLTNLKELVLLYNNLSGSIPPL-LEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 315 ---~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~-~~L~~L~l~~n~~~~~ip 364 (369)
.+|..+..+++|+.|++++|++. .+|.. +.. ++|++|++++|++++..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 35667889999999999999998 55554 444 999999999999987654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.6e-29 Score=225.12 Aligned_cols=252 Identities=23% Similarity=0.268 Sum_probs=168.6
Q ss_pred CCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCccc--
Q 040974 46 SPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGN-- 123 (369)
Q Consensus 46 ~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 123 (369)
..|.|.++.|+. +.+. .+|.. + .++|++|++++|.++...++.|.++++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~-----------~~l~-~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNS-----------KGLT-SVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCS-----------SCCS-SCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCC-----------CCcc-cCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 346777666653 3333 33332 2 36899999999999866666788999999999999988632
Q ss_pred CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCC-ccCCCCCCCCEEEccCccccccCCcCCcC
Q 040974 124 IPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVP-PSLSNLTDLFILFLQDNSFSGFIPPDIGN 202 (369)
Q Consensus 124 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 202 (369)
.+..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3566677889999999988877 456667788888888888887765443 45667777777777777776666666666
Q ss_pred CCCCcEEEccCCcCCC-CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEE
Q 040974 203 SKSMSVLYLSSNKFSG-PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSL 281 (369)
Q Consensus 203 l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (369)
+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 7777777777776654 345556666666666666666665555556666666666666666655444455555666666
Q ss_pred EccCCcCcccCCccccCCC-CCCEEEccCCcCc
Q 040974 282 LLSQNKLFGSIPDEIGKMR-SLSILDLSQNQFK 313 (369)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~ 313 (369)
++++|.+.+..+..+..++ +|+.|++++|++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 6666665555555555542 5556666555554
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1e-29 Score=226.32 Aligned_cols=277 Identities=20% Similarity=0.205 Sum_probs=226.6
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC--CCccccCCCCCcEEEee
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGS--IPPELGQLSSIVELSLF 164 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 164 (369)
+.++++++.++ .+|..+ .++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 555544 36899999999999855555678999999999999988733 24566788999999999
Q ss_pred ccccCCCCCccCCCCCCCCEEEccCccccccCC-cCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccccc-
Q 040974 165 SNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIP-PDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSG- 242 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 242 (369)
+|.+. ..+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99987 456668889999999999999886654 578889999999999999887777888899999999999999876
Q ss_pred ccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040974 243 SIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSN 322 (369)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 322 (369)
..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 57788899999999999999999887888999999999999999998776767888999999999999999888888888
Q ss_pred CC-CCCEEEccCCcccccCC--ccCcC-CCCCEEEccCCeecccCCCCc
Q 040974 323 LT-NLKELVLLYNNLSGSIP--PLLEN-PMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 323 ~~-~L~~L~l~~n~~~~~~~--~~~~~-~~L~~L~l~~n~~~~~ip~~~ 367 (369)
++ +|+.|++++|++...-. +.... ...+.+.+..+++....|+.+
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 85 89999999999875422 11111 344455666666666666654
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5.2e-28 Score=226.56 Aligned_cols=281 Identities=19% Similarity=0.197 Sum_probs=179.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.+++++|.+.+. + +..+++|++|++++|.+++. + ++.+++|++|++++|.+.+ ++ +..+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 4688888888887753 2 77788888888888888754 2 7778888888888888774 33 77788888888
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+++. .+..+++|++|++++|+..+.. .+..+++|++|++++|.++.. + +..+++|++|++++|.+.+
T Consensus 134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe
Confidence 888877753 2566677777777776433232 355666666666666666542 2 4555666666666665553
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchh---------------------------
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSS--------------------------- 271 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------------------- 271 (369)
. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+.+..+..
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 2 24555566666666665554 22 445555566666555555432222
Q ss_pred --hhcCCCCCEEEccCCcCcccCCc--------cccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 040974 272 --FRNLTGLLSLLLSQNKLFGSIPD--------EIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 272 --~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
+..+++|+.|++++|...+..|. .+..+++|+.|++++|.+++. + +..+++|+.|++++|++.+. +
T Consensus 280 ~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~ 355 (457)
T 3bz5_A 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-S 355 (457)
T ss_dssp EECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-T
T ss_pred ccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-c
Confidence 23345666666666654322221 244567888888888888763 2 77788888888888888752 2
Q ss_pred ccCc-------------CCCCCEEEccCCeecccCCCCc
Q 040974 342 PLLE-------------NPMLTQLSLDNNHFTGYLPHNV 367 (369)
Q Consensus 342 ~~~~-------------~~~L~~L~l~~n~~~~~ip~~~ 367 (369)
.... ...|+.+++++|+++|.||.++
T Consensus 356 ~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 356 SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred ccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 1100 0346778888888888888765
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.4e-28 Score=225.95 Aligned_cols=275 Identities=23% Similarity=0.186 Sum_probs=211.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.++++++.+.+. + .+..+++|++|++++|++++. + +..+++|++|++++|.+.+. + +.++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 4799999999999864 4 389999999999999999864 3 88999999999999999853 3 88999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+++ ++ +..+++|++|++++|++.+. .++++++|++|++++|...+.+ .+..+++|++|++++|.+.+
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99999985 33 88999999999999999864 3788999999999999544333 47789999999999999986
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCcccc-
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIG- 297 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 297 (369)
.+ +..++.|++|++++|.+++. .+..+++|+.|++++|.+++ .| +..+++|+.|++++|.+.+..+..+.
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 34 77899999999999999865 37889999999999999996 44 77889999999999998754332222
Q ss_pred ----------------------------CCCCCCEEEccCCcCcccCCc--------cccCCCCCCEEEccCCcccccCC
Q 040974 298 ----------------------------KMRSLSILDLSQNQFKGVLPP--------SVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 298 ----------------------------~~~~L~~L~l~~~~i~~~~~~--------~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
.+++|+.|++++|...+.+|. .+..+++|+.|++++|++++. +
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~ 334 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D 334 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c
Confidence 123444444444432222111 134456666666766666653 2
Q ss_pred ccCcCCCCCEEEccCCeecc
Q 040974 342 PLLENPMLTQLSLDNNHFTG 361 (369)
Q Consensus 342 ~~~~~~~L~~L~l~~n~~~~ 361 (369)
....++|++|++++|++++
T Consensus 335 -l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB
T ss_pred -cccCCcCcEEECCCCCCCC
Confidence 2222677777777777764
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.7e-29 Score=218.09 Aligned_cols=224 Identities=22% Similarity=0.237 Sum_probs=167.8
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 62 DNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 62 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
+.++.++..+. .+|.. -.++|++|+++++.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56677776665 33432 346899999999988877777888899999999999988877788888888999999988
Q ss_pred Cc-CCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCC
Q 040974 142 NH-LDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPI 220 (369)
Q Consensus 142 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 220 (369)
|. ++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 66555777888888888888888887766777778888888888888777655556777777777777777776544
Q ss_pred cccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 221 PLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 445666777777777777776666666777777777777777776555555666677777777766654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.1e-28 Score=225.66 Aligned_cols=246 Identities=21% Similarity=0.212 Sum_probs=194.6
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 62 DNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 62 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
..++.++..+. .+|.. + .+++++|++++|.+++..++.|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 57 ~~v~c~~~~l~-~iP~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQG-I--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCC-C--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34555555554 34433 2 26889999999999888888899999999999999998877788888999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCc-cccccCCcCCcCCCCCcEEEccCCcCCCCC
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN-SFSGFIPPDIGNSKSMSVLYLSSNKFSGPI 220 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 220 (369)
|.++...+..|..+++|++|++++|.+....+..+.++++|++|+++++ .+.......+..+++|++|++++|.+.+ .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 9988666666888899999999999888777777888899999999874 4444444567788888888888888874 3
Q ss_pred cccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCC
Q 040974 221 PLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMR 300 (369)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 300 (369)
+ .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 466778888888888888877777788888888888888888877777788888888888888888766666677788
Q ss_pred CCCEEEccCCcCc
Q 040974 301 SLSILDLSQNQFK 313 (369)
Q Consensus 301 ~L~~L~l~~~~i~ 313 (369)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 8888888888765
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.5e-29 Score=217.84 Aligned_cols=267 Identities=22% Similarity=0.278 Sum_probs=198.1
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeecc
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 166 (369)
++++.++..++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888777 445433 468999999999988777778888999999999999888777788888899999999998
Q ss_pred c-cCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccC
Q 040974 167 H-LNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIP 245 (369)
Q Consensus 167 ~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (369)
. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 766667788888889999998888887767778888888888888888876666667788888888888888876666
Q ss_pred ccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCC
Q 040974 246 SSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTN 325 (369)
Q Consensus 246 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 325 (369)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++....+. ......
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHH
Confidence 6677788888888888888777777787888888888888888765555677788888888888877633211 001122
Q ss_pred CCEEEccCCcccccCCccCcC---CCCCEEEccCC
Q 040974 326 LKELVLLYNNLSGSIPPLLEN---PMLTQLSLDNN 357 (369)
Q Consensus 326 L~~L~l~~n~~~~~~~~~~~~---~~L~~L~l~~n 357 (369)
++.+....+.+....|..+.. ..++..++.+|
T Consensus 250 l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 334445556665555555443 33444444444
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=224.15 Aligned_cols=247 Identities=21% Similarity=0.195 Sum_probs=209.0
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
...++..+..+. .+|.. + .++++.|+|++|+++...+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDG-I--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSC-C--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCC-C--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345666666665 44543 2 2689999999999998888999999999999999999997788899999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCc-cccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 141 TNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN-SFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
+|.++...+..|..+++|++|++++|.+....+..+.++++|++|+++++ .+....+..+..+++|++|++++|.+. .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99999666667899999999999999998777778899999999999985 444445557888999999999999887 3
Q ss_pred CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCC
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKM 299 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (369)
++ .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 47788899999999999988878888899999999999999988888888888999999999999887667777888
Q ss_pred CCCCEEEccCCcCc
Q 040974 300 RSLSILDLSQNQFK 313 (369)
Q Consensus 300 ~~L~~L~l~~~~i~ 313 (369)
++|+.|++++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999998875
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9.8e-28 Score=225.09 Aligned_cols=227 Identities=22% Similarity=0.222 Sum_probs=182.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.+++++|.+.+..+.. |.++++|++|++++|.+++..+.+|..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6888888888887655554 888888888888888888777788888888888888888888666666888888888888
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeecc-ccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSN-HLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
++|.++...+..|..+++|++|++++| .+....+..+.++++|++|++++|.++.. ..+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 888888666667788888888888884 34444445677888888888888888743 346778888888888888887
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77778888888888888888888777777888888888888888888777777788888888888888764
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=223.75 Aligned_cols=228 Identities=21% Similarity=0.206 Sum_probs=195.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
..++.+++++|.+.+..+.. |.++++|++|+|++|.+++..+.+|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46889999999987655544 89999999999999999877888899999999999999999866666788999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccc-cCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNH-LNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
+++|.++...+..|..+++|++|++++|. +....+..+.++++|++|++++|.++.. + .+..+++|++|++++|.+.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC
Confidence 99999887666788899999999999854 4444555788899999999999988843 3 4778899999999999988
Q ss_pred CCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 218 GPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777888899999999999999998888888899999999999999999777778888999999999998875
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.7e-28 Score=217.44 Aligned_cols=236 Identities=22% Similarity=0.272 Sum_probs=204.8
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEE
Q 040974 82 LFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVEL 161 (369)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 161 (369)
..++++.|+++++.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578899999999888 67777888999999999999888 78888888999999999999888 778888888899999
Q ss_pred EeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccc
Q 040974 162 SLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 162 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (369)
++++|.+.+..|..+.. . .....+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 99888776666654432 1 12234667999999999999998 77888999999999999999998
Q ss_pred cccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040974 242 GSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVS 321 (369)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 321 (369)
+ .|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 4 566789999999999999999989999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCccc
Q 040974 322 NLTNLKELVLLYNNLS 337 (369)
Q Consensus 322 ~~~~L~~L~l~~n~~~ 337 (369)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999999987665
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.3e-27 Score=225.78 Aligned_cols=280 Identities=25% Similarity=0.352 Sum_probs=223.8
Q ss_pred CCCCCccccceee--C-----CCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEEC
Q 040974 43 SKTSPCAWYGISC--N-----DAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYF 115 (369)
Q Consensus 43 ~~~~~c~~~~~~~--~-----~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 115 (369)
...++|.|.+..+ . ....++.++++++.+. .+|.. +. ++|++|++++|.++ .++. .+++|++|++
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~-l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L 88 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLT-SLPA---LPPELRTLEV 88 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSC-CC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChh-hC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEc
Confidence 5667788855321 1 1235899999999987 66654 33 89999999999998 4555 5789999999
Q ss_pred CCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcccccc
Q 040974 116 GGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF 195 (369)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (369)
++|.+. .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++.. +|.. +++|++|++++|.++..
T Consensus 89 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 89 SGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence 999998 5665 68999999999999984 444 57899999999999885 4433 48999999999988743
Q ss_pred CCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcC
Q 040974 196 IPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNL 275 (369)
Q Consensus 196 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (369)
+. .+++|+.|++++|.+.. ++ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. .+. .+
T Consensus 157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~ 220 (622)
T 3g06_A 157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LP 220 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CC
T ss_pred -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CC
Confidence 33 35789999999999885 44 456899999999999884 343 24789999999999884 343 34
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEc
Q 040974 276 TGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSL 354 (369)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l 354 (369)
++|+.|++++|.+.+ .| ..+++|+.|++++|.+++ +|. .+++|+.|++++|++. .+|..+.. ++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 789999999999984 44 456899999999999984 454 6789999999999998 67776666 99999999
Q ss_pred cCCeecccCCCCc
Q 040974 355 DNNHFTGYLPHNV 367 (369)
Q Consensus 355 ~~n~~~~~ip~~~ 367 (369)
++|++++.+|..|
T Consensus 292 ~~N~l~~~~~~~l 304 (622)
T 3g06_A 292 EGNPLSERTLQAL 304 (622)
T ss_dssp CSCCCCHHHHHHH
T ss_pred cCCCCCCcCHHHH
Confidence 9999998887654
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.9e-26 Score=200.24 Aligned_cols=217 Identities=24% Similarity=0.251 Sum_probs=177.1
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccC
Q 040974 45 TSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNI 124 (369)
Q Consensus 45 ~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 124 (369)
.+.|.|.|+.|......+.++++++.+. .+|.. + .+++++|++++|++++..+.+|..+++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999876667789999999887 45543 2 268999999999998777778999999999999999998655
Q ss_pred CccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCC
Q 040974 125 PPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSK 204 (369)
Q Consensus 125 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 204 (369)
+..|.++++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66678899999999999998866666778889999999999988877777788888899999988888866666677888
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCc
Q 040974 205 SMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLT 265 (369)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (369)
+|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 8888888888887666666777888888888888887665556777788888888887765
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.7e-29 Score=223.80 Aligned_cols=274 Identities=21% Similarity=0.166 Sum_probs=219.2
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
+++..+++.+.+...+... +..+++|++|++++|.+++..++.|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHH-HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHH-hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4667777777775444433 6778899999999999997777889999999999999999985444 889999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
++|.+++ +...++|++|++++|.+.+..+. .+++|++|++++|.++...+..+..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 9998873 22448999999999998755433 368899999999999877777788899999999999998865
Q ss_pred Ccccc-cCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccC
Q 040974 220 IPLSF-GNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGK 298 (369)
Q Consensus 220 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (369)
.+..+ ..+++|++|++++|.+++... ...+++|++|++++|.+.+.. ..+..+++|+.|++++|.+. ..|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhc
Confidence 55555 468899999999999875532 335889999999999998544 45888899999999999998 45777888
Q ss_pred CCCCCEEEccCCcCc-ccCCccccCCCCCCEEEccCC-cccccCCccCcCCC
Q 040974 299 MRSLSILDLSQNQFK-GVLPPSVSNLTNLKELVLLYN-NLSGSIPPLLENPM 348 (369)
Q Consensus 299 ~~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~ 348 (369)
+++|+.|++++|++. +..+..+..+++|+.+++.++ .+.+..+.....+.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~ 287 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTT
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCc
Confidence 899999999999998 567778888999999999855 45555444333333
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.1e-25 Score=208.73 Aligned_cols=254 Identities=27% Similarity=0.402 Sum_probs=113.7
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
++|++|++++|++++ +| .+..+++|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355555555555553 33 35555555555555555542 3332 2355555555555553 33 3555555555555
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGS 243 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (369)
++|.+.+ .|.. .++|++|++++|.+. .++ .+..+++|++|++++|.+.+ .+. ..++|++|++++|.+++
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-
Confidence 5555542 2211 135555555555554 233 25555556666666555542 221 12445555555555442
Q ss_pred cCccccCCCCCCEEEccCCCCccc--cchh-------------hhcC-CCCCEEEccCCcCcccCCccccCCCCCCEEEc
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTGY--IPSS-------------FRNL-TGLLSLLLSQNKLFGSIPDEIGKMRSLSILDL 307 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (369)
+|.. +++|+.|++++|.+++. .+.. +..+ ++|+.|++++|.+.+ .|. .+++|+.|++
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L 344 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIA 344 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEEC
Confidence 2221 24455555555544431 1100 1111 356666666665553 332 2466677777
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcccc--cCCccCcC--------------CCCCEEEccCCeecc--cCCCCc
Q 040974 308 SQNQFKGVLPPSVSNLTNLKELVLLYNNLSG--SIPPLLEN--------------PMLTQLSLDNNHFTG--YLPHNV 367 (369)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~~~~--------------~~L~~L~l~~n~~~~--~ip~~~ 367 (369)
++|.+++ +|. .+++|+.|++++|++.+ .+|..+.. ++|++|++++|++++ .||+++
T Consensus 345 ~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 345 SFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred CCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 7776663 333 35667777777777766 44443321 457777777777766 666655
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.4e-30 Score=243.50 Aligned_cols=304 Identities=19% Similarity=0.163 Sum_probs=179.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCC----CCCEEeCCCCcccc----cCCcCCCCCCCCCEEECCCCcCcccCCcccc-
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFP----HLAYLDLSYNKLFG----TIPPQISNLTNLIHLYFGGNQFSGNIPPEVG- 129 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~- 129 (369)
.+++.++++++.+.+......+..++ +|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 45777777777765433322123333 57777777777663 3466667777777777777776533222221
Q ss_pred ----CCCCCcEEEccCCcCCCCC----CccccCCCCCcEEEeeccccCCCCCccCC-----CCCCCCEEEccCcccccc-
Q 040974 130 ----LMSHLMFLYIDTNHLDGSI----PPELGQLSSIVELSLFSNHLNGSVPPSLS-----NLTDLFILFLQDNSFSGF- 195 (369)
Q Consensus 130 ----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~- 195 (369)
..++|++|++++|.+++.. +..+..+++|++|++++|.+.......+. ..++|++|++++|.++..
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 2456777777777666432 33445567777777777765432222222 245777777777766542
Q ss_pred ---CCcCCcCCCCCcEEEccCCcCCCCC-----cccccCCCCcceeeccccccccc----cCccccCCCCCCEEEccCCC
Q 040974 196 ---IPPDIGNSKSMSVLYLSSNKFSGPI-----PLSFGNLSNLNSLHLYGNSVSGS----IPSSLGKLKSLFNLQLKGNQ 263 (369)
Q Consensus 196 ---~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 263 (369)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2344555677777777777655321 11223466777777777766543 34445556777777777776
Q ss_pred Cccccchhhhc-----CCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcCcccCCcccc-----CCCCCCEE
Q 040974 264 LTGYIPSSFRN-----LTGLLSLLLSQNKLFGS----IPDEIGKMRSLSILDLSQNQFKGVLPPSVS-----NLTNLKEL 329 (369)
Q Consensus 264 ~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-----~~~~L~~L 329 (369)
+.+..+..+.. .++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+..+. ..++|+.|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 65433333322 25677777777776543 233445567777777777777654333232 15677777
Q ss_pred EccCCcccc----cCCccCcC-CCCCEEEccCCeeccc
Q 040974 330 VLLYNNLSG----SIPPLLEN-PMLTQLSLDNNHFTGY 362 (369)
Q Consensus 330 ~l~~n~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~ 362 (369)
++++|.+++ .++..+.. ++|++|++++|++++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 777777764 44444433 7777777777777643
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-28 Score=220.17 Aligned_cols=267 Identities=19% Similarity=0.185 Sum_probs=216.5
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEee
Q 040974 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLF 164 (369)
Q Consensus 85 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 164 (369)
.++..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777777765555556678899999999999997777889999999999999999875443 8899999999999
Q ss_pred ccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccccccc
Q 040974 165 SNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSI 244 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 244 (369)
+|.+.+. ...++|++|++++|.+....+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9988633 2348999999999998865433 3678999999999998776778888999999999999998776
Q ss_pred Cccc-cCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 040974 245 PSSL-GKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNL 323 (369)
Q Consensus 245 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 323 (369)
+..+ ..+++|++|++++|.+++... ...+++|+.|++++|.+.+ .+..+..+++|+.|++++|.+. .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 6665 468999999999999985522 3347899999999999985 4445888999999999999998 456678899
Q ss_pred CCCCEEEccCCccc-ccCCccCcC-CCCCEEEccCC-eecccCCC
Q 040974 324 TNLKELVLLYNNLS-GSIPPLLEN-PMLTQLSLDNN-HFTGYLPH 365 (369)
Q Consensus 324 ~~L~~L~l~~n~~~-~~~~~~~~~-~~L~~L~l~~n-~~~~~ip~ 365 (369)
++|+.|++++|++. +.++..+.. ++|+++++.+| .+++..|.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999998 666655555 78888888866 55655554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.1e-25 Score=206.09 Aligned_cols=272 Identities=25% Similarity=0.344 Sum_probs=204.7
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEE
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLY 138 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 138 (369)
.+++.+++++|.+.+ ++.. +++|++|++++|++++ ++.. .++|++|++++|.+.+ +| .+.++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 468888888888775 5432 4788999999888873 2321 2689999999999884 67 588999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC
Q 040974 139 IDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 139 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
+++|.+++ +|.. ..+|++|++++|.+.+ .| .++++++|++|++++|.+.+ ++.. .++|++|++++|.+.
T Consensus 160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 99998884 5543 3589999999999885 44 58899999999999998874 3332 358999999999887
Q ss_pred CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCccc--CCcc-
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGS--IPDE- 295 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~- 295 (369)
.+| .+..+++|++|++++|.+++ .|. .+++|+.|++++|.+.+ .+.. .++|+.|++++|.+.+. .+..
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTC
T ss_pred ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcC
Confidence 556 48889999999999999874 343 24789999999999885 3332 36777777777776641 1111
Q ss_pred ------------ccCC-CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecc-
Q 040974 296 ------------IGKM-RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTG- 361 (369)
Q Consensus 296 ------------~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~- 361 (369)
+..+ ++|+.|++++|.+.+ +|.. +++|+.|++++|.+. .+|. ..++|++|++++|++++
T Consensus 300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp CEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSC
T ss_pred CEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCcC
Confidence 1122 478888888888774 4432 578999999999888 4565 34889999999999998
Q ss_pred -cCCCCcc
Q 040974 362 -YLPHNVC 368 (369)
Q Consensus 362 -~ip~~~~ 368 (369)
.+|.+|.
T Consensus 373 ~~ip~~l~ 380 (454)
T 1jl5_A 373 PDIPESVE 380 (454)
T ss_dssp CCCCTTCC
T ss_pred CCChHHHH
Confidence 7888764
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=6.2e-30 Score=240.72 Aligned_cols=307 Identities=18% Similarity=0.127 Sum_probs=227.0
Q ss_pred CCEEEEEcCCCCCccc----cCCcccCCCCCCCEEeCCCCcccccCCcCC-CCCC----CCCEEECCCCcCcc----cCC
Q 040974 59 GRVDNITLPAKGLKGK----LHDFSFSLFPHLAYLDLSYNKLFGTIPPQI-SNLT----NLIHLYFGGNQFSG----NIP 125 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-~~l~----~L~~L~l~~~~~~~----~~~ 125 (369)
.+++.+++++|.+.+. ++.. +..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+.. .++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3688899999887643 3333 6778999999999998865422222 2233 79999999998873 457
Q ss_pred ccccCCCCCcEEEccCCcCCCCCCccc-----cCCCCCcEEEeeccccCCCC----CccCCCCCCCCEEEccCccccccC
Q 040974 126 PEVGLMSHLMFLYIDTNHLDGSIPPEL-----GQLSSIVELSLFSNHLNGSV----PPSLSNLTDLFILFLQDNSFSGFI 196 (369)
Q Consensus 126 ~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~ 196 (369)
..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+.... +..+..+++|++|++++|.+.+..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 788889999999999998764333322 23568999999999876532 455667899999999999876443
Q ss_pred CcCCc-----CCCCCcEEEccCCcCCCC----CcccccCCCCcceeecccccccccc-----CccccCCCCCCEEEccCC
Q 040974 197 PPDIG-----NSKSMSVLYLSSNKFSGP----IPLSFGNLSNLNSLHLYGNSVSGSI-----PSSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 197 ~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~ 262 (369)
...+. ..++|++|++++|.+... ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 22222 356899999999988754 3556778899999999999876432 222335789999999999
Q ss_pred CCccc----cchhhhcCCCCCEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCccc----CCccccCCCCCCEE
Q 040974 263 QLTGY----IPSSFRNLTGLLSLLLSQNKLFGSIPDEIG-----KMRSLSILDLSQNQFKGV----LPPSVSNLTNLKEL 329 (369)
Q Consensus 263 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L 329 (369)
.++.. .+..+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.+++. ++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 98854 456677789999999999988644333222 337999999999999865 45566778999999
Q ss_pred EccCCcccccCCccCc------CCCCCEEEccCCeecc----cCCCC
Q 040974 330 VLLYNNLSGSIPPLLE------NPMLTQLSLDNNHFTG----YLPHN 366 (369)
Q Consensus 330 ~l~~n~~~~~~~~~~~------~~~L~~L~l~~n~~~~----~ip~~ 366 (369)
++++|.+.+..+..+. .++|++|++++|++++ .+|+.
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 9999999876544332 3699999999999986 56543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-28 Score=218.09 Aligned_cols=250 Identities=23% Similarity=0.208 Sum_probs=133.1
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCc-ccCCcccc-------CCCCCcEEEccCCcCCCCCCccc
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFS-GNIPPEVG-------LMSHLMFLYIDTNHLDGSIPPEL 152 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~ 152 (369)
...++|+.+++++|.+ ..|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666666 344433322 666666666653 23444443 56666666666666665555554
Q ss_pred --cCCCCCcEEEeeccccCCCCCccCCCC-----CCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC--Cccc
Q 040974 153 --GQLSSIVELSLFSNHLNGSVPPSLSNL-----TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP--IPLS 223 (369)
Q Consensus 153 --~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~ 223 (369)
..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5666666666666666544 4444433 4455555555544444434444444444444444443221 0111
Q ss_pred ccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCcc---ccchhhhcCCCCCEEEccCCcCcccCC-ccccCC
Q 040974 224 FGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTG---YIPSSFRNLTGLLSLLLSQNKLFGSIP-DEIGKM 299 (369)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 299 (369)
+ .+..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 195 ~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 195 L----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp S----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred H----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 1 11445556666666665552 112233455666666666666654432 234445
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecc
Q 040974 300 RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTG 361 (369)
Q Consensus 300 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 361 (369)
++|+.|++++|.++ .+|..+. ++|+.|++++|++.+. |.....++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 66777777777666 4444443 6677777777776654 442222667777777776653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.4e-28 Score=217.07 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=134.0
Q ss_pred CCCCCEEEccCccccccCCcCC--cCCCCCcEEEccCCcCCCCCcccccCC-----CCcceeeccccccccccCccccCC
Q 040974 179 LTDLFILFLQDNSFSGFIPPDI--GNSKSMSVLYLSSNKFSGPIPLSFGNL-----SNLNSLHLYGNSVSGSIPSSLGKL 251 (369)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~ 251 (369)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4445555555554444444433 5566666666666666644 4444444 788888888888877777788888
Q ss_pred CCCCEEEccCCCCccc--cchhh--hcCCCCCEEEccCCcCcc---cCCccccCCCCCCEEEccCCcCcccCC-ccccCC
Q 040974 252 KSLFNLQLKGNQLTGY--IPSSF--RNLTGLLSLLLSQNKLFG---SIPDEIGKMRSLSILDLSQNQFKGVLP-PSVSNL 323 (369)
Q Consensus 252 ~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~ 323 (369)
++|++|++++|.+.+. .+..+ ..+++|+.|++++|.+.+ .....+..+++|+.|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8999999999887643 22333 788999999999999873 222344578999999999999987664 456678
Q ss_pred CCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCCC
Q 040974 324 TNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLPH 365 (369)
Q Consensus 324 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip~ 365 (369)
++|+.|++++|.++ .+|..+. ++|++|++++|++++ +|.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~-~p~ 291 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDR-NPS 291 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCS-CCC
T ss_pred CCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCC-Chh
Confidence 99999999999998 6776665 899999999999984 475
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-26 Score=217.18 Aligned_cols=239 Identities=21% Similarity=0.163 Sum_probs=192.6
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
...+++|++|++++|.+++..+..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++. ...++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcC
Confidence 4456689999999999988778889999999999999999885554 88899999999999988732 2347899
Q ss_pred EEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCccccc-CCCCcceeecccc
Q 040974 160 ELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFG-NLSNLNSLHLYGN 238 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 238 (369)
+|++++|.+.+..+. .+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+. .++.|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999988765443 457899999999998877777788889999999999988876666665 6889999999999
Q ss_pred ccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc-ccCC
Q 040974 239 SVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK-GVLP 317 (369)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~ 317 (369)
.+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ .|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 8876533 3457889999999998886544 47788899999999998874 5666778889999999999887 4556
Q ss_pred ccccCCCCCCEEEcc
Q 040974 318 PSVSNLTNLKELVLL 332 (369)
Q Consensus 318 ~~l~~~~~L~~L~l~ 332 (369)
..+..++.|+.+++.
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 667777888877775
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=190.01 Aligned_cols=221 Identities=20% Similarity=0.215 Sum_probs=121.5
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeecccc
Q 040974 89 LDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHL 168 (369)
Q Consensus 89 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 168 (369)
++..+..++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 3444332 4677777777777655555677777777777777776655555666677777777777766
Q ss_pred CCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC-CcccccCCCCcceeeccccccccccCcc
Q 040974 169 NGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP-IPLSFGNLSNLNSLHLYGNSVSGSIPSS 247 (369)
Q Consensus 169 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 247 (369)
.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 655555666666666666666666554444555666666666666655532 3455555555555555555555443333
Q ss_pred ccCCCCCC----EEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 248 LGKLKSLF----NLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 248 l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
+..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 43333333 455555544433222222 224444444444444333333344444444444444443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.7e-26 Score=212.96 Aligned_cols=238 Identities=20% Similarity=0.190 Sum_probs=177.9
Q ss_pred CCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCC
Q 040974 104 ISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLF 183 (369)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (369)
...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3455689999999998887777888889999999999988875443 778888999999988876332 237888
Q ss_pred EEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCcccc-CCCCCCEEEccCC
Q 040974 184 ILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLG-KLKSLFNLQLKGN 262 (369)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 262 (369)
+|++++|.+....+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 888888888755433 357788888888888876677777888888888888888776666665 6788888888888
Q ss_pred CCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc-ccCC
Q 040974 263 QLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS-GSIP 341 (369)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~ 341 (369)
.+++..+ ...+++|+.|++++|.+.+. +..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 8875522 33477888888888888754 3347777888888888888874 5556777788888888888877 4444
Q ss_pred ccCcC-CCCCEEEcc
Q 040974 342 PLLEN-PMLTQLSLD 355 (369)
Q Consensus 342 ~~~~~-~~L~~L~l~ 355 (369)
..+.. +.|+.+++.
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 44433 556666664
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.1e-24 Score=188.06 Aligned_cols=205 Identities=24% Similarity=0.193 Sum_probs=167.2
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46899999999888777778888999999999999888777778888899999999999888777777888899999999
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCcccccc-CCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcc----eeecccc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNSFSGF-IPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLN----SLHLYGN 238 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 238 (369)
++|.+.+..+..+.++++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..++.|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99888876666788889999999999888764 477788889999999999988765555666555555 7888888
Q ss_pred ccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCc
Q 040974 239 SVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 88765555443 447899999999888766667788889999999988876
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.8e-23 Score=182.57 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=149.7
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEcc
Q 040974 109 NLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQ 188 (369)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 188 (369)
..++++++++.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888887 5665543 678888888888876666677888888888888888876666666778888888888
Q ss_pred CccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCcccc
Q 040974 189 DNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYI 268 (369)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (369)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88877666666777788888888888777666666777778888888887777555555677777777777777777666
Q ss_pred chhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 269 PSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 269 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 666777777777777777776554555666777777777777664
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2e-24 Score=188.83 Aligned_cols=222 Identities=22% Similarity=0.241 Sum_probs=138.4
Q ss_pred CEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCc
Q 040974 111 IHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDN 190 (369)
Q Consensus 111 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (369)
..+++..+.+.+. ..+..+++|+.|+++++.++. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3344444444322 224456777888887777652 2 3466777777777777777542 35667777777777777
Q ss_pred cccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccch
Q 040974 191 SFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPS 270 (369)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 270 (369)
.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 77655555566677777777777776655555566666777777777766655555556666666666666666655555
Q ss_pred hhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCc
Q 040974 271 SFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLE 345 (369)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 345 (369)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ .+++|+.+++..|.+.|.+|..+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 55666666666666666665555555566666666666665542 244556666666666665555444
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2e-22 Score=194.45 Aligned_cols=242 Identities=29% Similarity=0.402 Sum_probs=198.4
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
.++++|+++++.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46999999999998 6676654 89999999999998 5665 5799999999999988 4555 6789999999
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGS 243 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (369)
++|.+.+. +. .+++|++|++++|.++. ++.. +++|++|++++|.+.+ ++. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 99998854 33 56899999999999885 4433 5899999999998874 333 34689999999999984
Q ss_pred cCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNL 323 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 323 (369)
+| ..+++|+.|++++|.+++ .+. ..++|+.|++++|.+. ..+. .+++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 44 456899999999999985 333 2478999999999987 4443 35899999999999985 44 456
Q ss_pred CCCCEEEccCCcccccCCccCcCCCCCEEEccCCeecccCCCCcc
Q 040974 324 TNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFTGYLPHNVC 368 (369)
Q Consensus 324 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ip~~~~ 368 (369)
++|+.|++++|.+. .+|. ..++|++|++++|+++ .||+.|.
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred CcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHh
Confidence 89999999999998 5555 3488999999999999 8998774
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.8e-23 Score=179.80 Aligned_cols=197 Identities=22% Similarity=0.210 Sum_probs=89.4
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.++++++.+. .+|.. + .+++++|++++|.+++..+..|..+++|++|++++|.+.+..+ ...+++|++|++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CccEEECCCCCCC-cCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 3445555554443 22222 1 1345555555555544444444555555555555555442211 134445555555
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
++|.++ .+|..+..+++|++|++++|++.+..+..+.++++|++|++++|.++...+..+..+++|+.|++++|.+...
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 555444 3344444445555555555554444444444445555555555544443333344444455555544444433
Q ss_pred CcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCC
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQL 264 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (369)
.+..+..+++|+.|++++|.++ .+|..+...++|+.+++++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 3333444444444444444444 2333333344444444444443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.8e-23 Score=182.73 Aligned_cols=207 Identities=23% Similarity=0.267 Sum_probs=101.7
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
..+++|+.|+++++.++. ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344555555555555541 1234455555555555555542 2 24455555555555555555444444455555555
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccc
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSV 240 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (369)
|++++|.+.+..+..+.++++|++|++++|.++...+..+..+ ++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l 169 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL------------------------TNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------------------------TTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC------------------------ccCCEEECCCCCc
Confidence 5555555544444444445555555555554443333334444 4455555555444
Q ss_pred ccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccc
Q 040974 241 SGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSV 320 (369)
Q Consensus 241 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 320 (369)
++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. ..+++|+.|++..|.+.+.+|..+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 4333333444455555555555554444444445555555555555443 223445555555555555555444
Q ss_pred cC
Q 040974 321 SN 322 (369)
Q Consensus 321 ~~ 322 (369)
+.
T Consensus 243 ~~ 244 (272)
T 3rfs_A 243 GS 244 (272)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.4e-23 Score=180.30 Aligned_cols=203 Identities=23% Similarity=0.239 Sum_probs=167.5
Q ss_pred CCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCC
Q 040974 104 ISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLF 183 (369)
Q Consensus 104 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (369)
+.+++++++++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+....+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567888999999999888 566555 3789999999999887777788899999999999998875433 26788999
Q ss_pred EEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCC
Q 040974 184 ILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQ 263 (369)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (369)
+|++++|.+. .++..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999887 456677888899999999998887666778888999999999998887777777888899999999998
Q ss_pred CccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 264 LTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
++...+..+..+++|+.|++++|.+. ..|..+...++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 88666667788889999999999887 56666777788899999888775
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.4e-25 Score=199.00 Aligned_cols=268 Identities=18% Similarity=0.201 Sum_probs=158.4
Q ss_pred CCEEeCCCCcccccCCcCCCCC--CCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCC-CCccccCCCCCcEEE
Q 040974 86 LAYLDLSYNKLFGTIPPQISNL--TNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGS-IPPELGQLSSIVELS 162 (369)
Q Consensus 86 L~~L~l~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 162 (369)
++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 677888877665 3344455 6788888888877754444 45677888888887776644 555667777778887
Q ss_pred eeccccCCCCCccCCCCCCCCEEEccCc-ccccc-CCcCCcCCCCCcEEEccCC-cCCCC-CcccccCCC-Ccceeeccc
Q 040974 163 LFSNHLNGSVPPSLSNLTDLFILFLQDN-SFSGF-IPPDIGNSKSMSVLYLSSN-KFSGP-IPLSFGNLS-NLNSLHLYG 237 (369)
Q Consensus 163 l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~ 237 (369)
+++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777766555566667777777777777 44432 3334556677777777777 55532 344455666 777777777
Q ss_pred cc--cc-cccCccccCCCCCCEEEccCCC-CccccchhhhcCCCCCEEEccCCc-CcccCCccccCCCCCCEEEccCCcC
Q 040974 238 NS--VS-GSIPSSLGKLKSLFNLQLKGNQ-LTGYIPSSFRNLTGLLSLLLSQNK-LFGSIPDEIGKMRSLSILDLSQNQF 312 (369)
Q Consensus 238 ~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~i 312 (369)
|. ++ +..+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 63 33 2334444556667777777666 444455556666667777776663 22222223555666666666666 3
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCeec
Q 040974 313 KGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNHFT 360 (369)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 360 (369)
.+.....+. ..++.|++++|.+++..|..+......++.--.|.++
T Consensus 284 ~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~~~~~~i~g~~~~~~ 329 (336)
T 2ast_B 284 PDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLT 329 (336)
T ss_dssp CTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSSTTCCCBTTBCCSEE
T ss_pred CHHHHHHHH--hhCcceEEecccCccccCCcccccccceeechhhHHh
Confidence 322211111 2244455666666666655554433333333344433
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.9e-25 Score=200.15 Aligned_cols=268 Identities=15% Similarity=0.153 Sum_probs=207.8
Q ss_pred CCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCC--CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCccc
Q 040974 46 SPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLF--PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGN 123 (369)
Q Consensus 46 ~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 123 (369)
.|..|+++.+. ...++.++++++.+... .+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~~~~~----~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCBCCHH----HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC-chhheeeccccccCCHH----HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 34478888775 34588999999877632 25556 8899999999999866665 55799999999999998754
Q ss_pred -CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeecc-ccCC-CCCccCCCCCCCCEEEccCc-ccccc-CCc
Q 040974 124 -IPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN-HLNG-SVPPSLSNLTDLFILFLQDN-SFSGF-IPP 198 (369)
Q Consensus 124 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~ 198 (369)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+ ..+..+.++++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7778889999999999999988777778888999999999999 5553 24555778999999999999 77743 345
Q ss_pred CCcCCC-CCcEEEccCCc--CC-CCCcccccCCCCcceeeccccc-cccccCccccCCCCCCEEEccCCC-Cccccchhh
Q 040974 199 DIGNSK-SMSVLYLSSNK--FS-GPIPLSFGNLSNLNSLHLYGNS-VSGSIPSSLGKLKSLFNLQLKGNQ-LTGYIPSSF 272 (369)
Q Consensus 199 ~l~~l~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~ 272 (369)
.+..++ +|++|++++|. ++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 567788 99999999994 44 2445567789999999999998 666667788889999999999995 333333467
Q ss_pred hcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040974 273 RNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSN 322 (369)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 322 (369)
..+++|+.|++++| +.......+. .+++.|++++|.+++..|..+..
T Consensus 269 ~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred hcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 88999999999998 4432222221 34667778999999877766543
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.9e-22 Score=174.05 Aligned_cols=190 Identities=21% Similarity=0.223 Sum_probs=134.2
Q ss_pred CCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCC
Q 040974 46 SPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIP 125 (369)
Q Consensus 46 ~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 125 (369)
+|+.|.|+.|.. ..+.++++++.+. .+|.. +. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 456888888853 3567888888876 44443 22 578888888888887777788888888888888888887777
Q ss_pred ccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCC
Q 040974 126 PEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS 205 (369)
Q Consensus 126 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 205 (369)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 77788888888888888887666666777778888888877777555555666677777777777666554445666666
Q ss_pred CcEEEccCCcCCCCCcccccCCCCcceeeccccccc
Q 040974 206 MSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (369)
|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 666666666665444445555556666666555554
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=8.8e-25 Score=199.03 Aligned_cols=177 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred EEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCC----cCCCCCC-CCCEEECCCCcCcccCCccccCC-----CC
Q 040974 64 ITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIP----PQISNLT-NLIHLYFGGNQFSGNIPPEVGLM-----SH 133 (369)
Q Consensus 64 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~ 133 (369)
..++.+.+.+.++.. +...++|++|++++|.+++..+ +++..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 345666666555543 4444457777777776665544 5555666 67777777766665545444443 66
Q ss_pred CcEEEccCCcCCCCCCcc----ccCC-CCCcEEEeeccccCCCCCccC----CC-CCCCCEEEccCccccccCC----cC
Q 040974 134 LMFLYIDTNHLDGSIPPE----LGQL-SSIVELSLFSNHLNGSVPPSL----SN-LTDLFILFLQDNSFSGFIP----PD 199 (369)
Q Consensus 134 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~----~~ 199 (369)
|++|++++|.+++..+.. +..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 666666666665444332 2233 566666666666554433222 22 2355566665555543221 11
Q ss_pred CcCCC-CCcEEEccCCcCCCCCccc----ccCC-CCcceeeccccccc
Q 040974 200 IGNSK-SMSVLYLSSNKFSGPIPLS----FGNL-SNLNSLHLYGNSVS 241 (369)
Q Consensus 200 l~~l~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~ 241 (369)
+...+ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 22232 5555555555554333221 2222 25555555555544
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.5e-25 Score=203.54 Aligned_cols=241 Identities=17% Similarity=0.170 Sum_probs=118.7
Q ss_pred cCCCCCCCEEeCCCCccccc----CCcCCCCCCCCCEEECCCCcC---cccCCccc-------cCCCCCcEEEccCCcCC
Q 040974 80 FSLFPHLAYLDLSYNKLFGT----IPPQISNLTNLIHLYFGGNQF---SGNIPPEV-------GLMSHLMFLYIDTNHLD 145 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l~~~~~~ 145 (369)
+..+++|++|++++|.+++. +...+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34455566666666655443 223355556666666655432 22233222 34555555555555544
Q ss_pred CC----CCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCC---------CCCcEEEcc
Q 040974 146 GS----IPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNS---------KSMSVLYLS 212 (369)
Q Consensus 146 ~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l---------~~L~~L~l~ 212 (369)
.. ++..+..+++|++|++++|.+....+..+. ..+..+ ++|++|+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCcEEECC
Confidence 31 233344444555555554444311111111 111112 555556665
Q ss_pred CCcCCC-CCc---ccccCCCCcceeecccccccc-----ccCccccCCCCCCEEEccCCCCc----cccchhhhcCCCCC
Q 040974 213 SNKFSG-PIP---LSFGNLSNLNSLHLYGNSVSG-----SIPSSLGKLKSLFNLQLKGNQLT----GYIPSSFRNLTGLL 279 (369)
Q Consensus 213 ~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~ 279 (369)
+|.+.. ..+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ...+..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 555541 122 234455566666666665541 12224555566666666666654 23444555666666
Q ss_pred EEEccCCcCccc----CCcccc--CCCCCCEEEccCCcCcc----cCCccc-cCCCCCCEEEccCCcccccC
Q 040974 280 SLLLSQNKLFGS----IPDEIG--KMRSLSILDLSQNQFKG----VLPPSV-SNLTNLKELVLLYNNLSGSI 340 (369)
Q Consensus 280 ~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~i~~----~~~~~l-~~~~~L~~L~l~~n~~~~~~ 340 (369)
.|++++|.+.+. .+..+. .+++|+.|++++|.+.+ .++..+ ..+++|+.|++++|++.+..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666665533 223332 25666666666666664 244444 34566666666666666444
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.8e-22 Score=170.88 Aligned_cols=197 Identities=19% Similarity=0.203 Sum_probs=138.9
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCc-CcccCCccccCCCCCcEEEccC-CcCCCCCCccccCCCCCcEE
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQ-FSGNIPPEVGLMSHLMFLYIDT-NHLDGSIPPELGQLSSIVEL 161 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 161 (369)
++|++|++++|++++..+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.++...+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999987777788889999999999996 7766666888899999999988 88886666678888899999
Q ss_pred EeeccccCCCCCccCCCCCCCC---EEEccCc-cccccCCcCCcCCCCCc-EEEccCCcCCCCCcccccCCCCcceeecc
Q 040974 162 SLFSNHLNGSVPPSLSNLTDLF---ILFLQDN-SFSGFIPPDIGNSKSMS-VLYLSSNKFSGPIPLSFGNLSNLNSLHLY 236 (369)
Q Consensus 162 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (369)
++++|.+.+ .|. +..+++|+ +|++++| .+....+..+..+++|+ +|++++|.+....+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999888875 444 67777777 7777777 66655555666777777 7777777666322233333 566667776
Q ss_pred ccc-cccccCccccCC-CCCCEEEccCCCCccccchhhhcCCCCCEEEccCC
Q 040974 237 GNS-VSGSIPSSLGKL-KSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQN 286 (369)
Q Consensus 237 ~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 286 (369)
+|. +++..+..|..+ ++|+.|++++|.+++..+. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 663 654545556666 6666666666666533222 3455556655543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.6e-25 Score=203.45 Aligned_cols=241 Identities=16% Similarity=0.195 Sum_probs=167.8
Q ss_pred CCccccCCCCCcEEEccCCcCCCCCC----ccccCCCCCcEEEeeccccC---CCCCcc-------CCCCCCCCEEEccC
Q 040974 124 IPPEVGLMSHLMFLYIDTNHLDGSIP----PELGQLSSIVELSLFSNHLN---GSVPPS-------LSNLTDLFILFLQD 189 (369)
Q Consensus 124 ~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~~~~-------l~~l~~L~~L~l~~ 189 (369)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+. +..|.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34444445555555555555443211 22444555555555554322 122222 35677777777777
Q ss_pred ccccc----cCCcCCcCCCCCcEEEccCCcCCCCCccc----ccCC---------CCcceeecccccccc-ccC---ccc
Q 040974 190 NSFSG----FIPPDIGNSKSMSVLYLSSNKFSGPIPLS----FGNL---------SNLNSLHLYGNSVSG-SIP---SSL 248 (369)
Q Consensus 190 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~~l 248 (369)
|.+.. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.++. ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77664 24445667888888888888775333322 3333 899999999999862 333 356
Q ss_pred cCCCCCCEEEccCCCCcc-----ccchhhhcCCCCCEEEccCCcCc----ccCCccccCCCCCCEEEccCCcCccc----
Q 040974 249 GKLKSLFNLQLKGNQLTG-----YIPSSFRNLTGLLSLLLSQNKLF----GSIPDEIGKMRSLSILDLSQNQFKGV---- 315 (369)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~---- 315 (369)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678999999999999873 23337788999999999999985 45667788899999999999999865
Q ss_pred CCcccc--CCCCCCEEEccCCcccc----cCCccC-cC-CCCCEEEccCCeecccCC
Q 040974 316 LPPSVS--NLTNLKELVLLYNNLSG----SIPPLL-EN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 316 ~~~~l~--~~~~L~~L~l~~n~~~~----~~~~~~-~~-~~L~~L~l~~n~~~~~ip 364 (369)
++..+. .+++|+.|++++|.+.+ .++..+ .. ++|++|++++|++++..|
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 445553 38999999999999997 466665 43 999999999999986653
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.7e-24 Score=197.13 Aligned_cols=281 Identities=19% Similarity=0.170 Sum_probs=197.1
Q ss_pred EEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCC----ccccCCC-CCcEEEccCCcCCCCCCccccCC-----CC
Q 040974 88 YLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIP----PEVGLMS-HLMFLYIDTNHLDGSIPPELGQL-----SS 157 (369)
Q Consensus 88 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 157 (369)
.++++.+.+++..++.+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788889988888877777789999999999986665 7788888 99999999999987766666554 89
Q ss_pred CcEEEeeccccCCCCCcc----CCCC-CCCCEEEccCccccccCCcC----CcC-CCCCcEEEccCCcCCCCCc----cc
Q 040974 158 IVELSLFSNHLNGSVPPS----LSNL-TDLFILFLQDNSFSGFIPPD----IGN-SKSMSVLYLSSNKFSGPIP----LS 223 (369)
Q Consensus 158 L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~~----~~ 223 (369)
|++|++++|.+....+.. +..+ ++|++|++++|.++...... +.. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988665554 3444 89999999999988654433 334 3699999999998885433 33
Q ss_pred ccCCC-CcceeeccccccccccCcc----ccCC-CCCCEEEccCCCCccc----cchhhhc-CCCCCEEEccCCcCcccC
Q 040974 224 FGNLS-NLNSLHLYGNSVSGSIPSS----LGKL-KSLFNLQLKGNQLTGY----IPSSFRN-LTGLLSLLLSQNKLFGSI 292 (369)
Q Consensus 224 ~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 292 (369)
+...+ +|++|++++|.+++..+.. +... ++|++|++++|.+.+. .+..+.. .++|+.|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44555 9999999999998665533 3445 5999999999998863 3444544 459999999999987543
Q ss_pred C----ccccCCCCCCEEEccCCcCccc-------CCccccCCCCCCEEEccCCcccccCCccCc-----------CCC--
Q 040974 293 P----DEIGKMRSLSILDLSQNQFKGV-------LPPSVSNLTNLKELVLLYNNLSGSIPPLLE-----------NPM-- 348 (369)
Q Consensus 293 ~----~~~~~~~~L~~L~l~~~~i~~~-------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----------~~~-- 348 (369)
+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++.+..+..+. .++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~~~~~~~~psll 321 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHHHHTCCCTTTC-
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHHCCCCcchHHHH
Confidence 3 3456789999999999984432 234567888999999999998866332111 122
Q ss_pred -CCEEEccCCeec---ccCCCCcc
Q 040974 349 -LTQLSLDNNHFT---GYLPHNVC 368 (369)
Q Consensus 349 -L~~L~l~~n~~~---~~ip~~~~ 368 (369)
...+.+..|++. +.||+++.
T Consensus 322 ~~~~~~~~~n~~~~~~~~iP~~l~ 345 (362)
T 3goz_A 322 NQCLIFAQKHQTNIEDLNIPDELR 345 (362)
T ss_dssp ------------------------
T ss_pred hhhhheeeccccCcchhhCcHHHH
Confidence 234566777653 45777654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=179.98 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=149.9
Q ss_pred CCCEEECCCCcCcccC-Cc--cccCCCCCcEEEccCCcCCCCCCccc--cCCCCCcEEEeeccccCCCCC----ccCCCC
Q 040974 109 NLIHLYFGGNQFSGNI-PP--EVGLMSHLMFLYIDTNHLDGSIPPEL--GQLSSIVELSLFSNHLNGSVP----PSLSNL 179 (369)
Q Consensus 109 ~L~~L~l~~~~~~~~~-~~--~l~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l 179 (369)
.++.+.+.++.+.... .. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566666666553210 00 11134557777777777776666666 667777777777777664333 234457
Q ss_pred CCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC--C--cccccCCCCcceeeccccccccccC--c-cccCCC
Q 040974 180 TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP--I--PLSFGNLSNLNSLHLYGNSVSGSIP--S-SLGKLK 252 (369)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~--~-~l~~~~ 252 (369)
++|++|++++|.+....+..+..+++|++|++++|.+.+. . ...+..+++|++|++++|.++.... . .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7777777777777766666777777788888877765431 1 1223567778888888887752211 1 245667
Q ss_pred CCCEEEccCCCCccccchhhhcC---CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 040974 253 SLFNLQLKGNQLTGYIPSSFRNL---TGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKEL 329 (369)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L 329 (369)
+|++|++++|.+.+..|..+..+ ++|++|++++|.+. ..|..+. ++|+.|++++|.+++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 88888888888876656555554 68888888888887 4555443 7889999999988854 32 5678899999
Q ss_pred EccCCcccc
Q 040974 330 VLLYNNLSG 338 (369)
Q Consensus 330 ~l~~n~~~~ 338 (369)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999998874
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.3e-22 Score=177.04 Aligned_cols=207 Identities=23% Similarity=0.362 Sum_probs=158.4
Q ss_pred eCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccC
Q 040974 90 DLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 90 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
.+..+.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 34444444322 2346789999999999887 455 578899999999999988844 44 888999999999999887
Q ss_pred CCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCcccc
Q 040974 170 GSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLG 249 (369)
Q Consensus 170 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 249 (369)
+. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 170 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence 43 3678889999999999988753 237788899999999988875433 7788888999998888875433 77
Q ss_pred CCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcc
Q 040974 250 KLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKG 314 (369)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 314 (369)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 88888888888888875433 777888888888888887443 36778888888888888764
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.1e-22 Score=170.09 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCcEEEccCCc-CCCCCCccccCCCCCcEEEeec-cccCCCCCccCCCCCCCCEEE
Q 040974 109 NLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNH-LDGSIPPELGQLSSIVELSLFS-NHLNGSVPPSLSNLTDLFILF 186 (369)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 186 (369)
+|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666665554444455555555555555554 4433333455555555555555 455443334444444455554
Q ss_pred ccCcccc
Q 040974 187 LQDNSFS 193 (369)
Q Consensus 187 l~~~~~~ 193 (369)
+++|.++
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 4444443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=178.68 Aligned_cols=227 Identities=21% Similarity=0.195 Sum_probs=179.7
Q ss_pred CCCCcEEEccCCcCCCCCCc---cccCCCCCcEEEeeccccCCCCCccC--CCCCCCCEEEccCccccccCC----cCCc
Q 040974 131 MSHLMFLYIDTNHLDGSIPP---ELGQLSSIVELSLFSNHLNGSVPPSL--SNLTDLFILFLQDNSFSGFIP----PDIG 201 (369)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~ 201 (369)
...++.+.+.++.++..... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 44688889988776532111 12245679999999999998888887 889999999999999886443 2345
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccc---c-CccccCCCCCCEEEccCCCCccccc--h-hhhc
Q 040974 202 NSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGS---I-PSSLGKLKSLFNLQLKGNQLTGYIP--S-SFRN 274 (369)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~ 274 (369)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999877778899999999999999987542 1 2334678999999999999973222 1 3577
Q ss_pred CCCCCEEEccCCcCcccCCccccCC---CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcCCCCCE
Q 040974 275 LTGLLSLLLSQNKLFGSIPDEIGKM---RSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQ 351 (369)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 351 (369)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++.+. |.....++|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccE
Confidence 8999999999999987767666665 79999999999999 5566553 7999999999999964 33333399999
Q ss_pred EEccCCeecc
Q 040974 352 LSLDNNHFTG 361 (369)
Q Consensus 352 L~l~~n~~~~ 361 (369)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999873
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4e-21 Score=165.76 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=134.2
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34677888888777 4555443 57888888888887777777888888888888888888766666778888888888
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGS 243 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (369)
++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888766666777778888888888877766555667777788888877777755555677777777777777777766
Q ss_pred cCccccCCCCCCEEEccCCCCcc
Q 040974 244 IPSSLGKLKSLFNLQLKGNQLTG 266 (369)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~ 266 (369)
.+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 66667777777777777777654
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.5e-21 Score=171.14 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=165.5
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
...+++|++|+++++.++. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ . +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 4568899999999999874 44 57889999999999999984 444 8999999999999999884 3 4688999999
Q ss_pred EEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccc
Q 040974 160 ELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNS 239 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (369)
+|++++|.+.+. + .+..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999998754 3 3889999999999999988543 37889999999999999885433 8889999999999999
Q ss_pred cccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcc
Q 040974 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFG 290 (369)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (369)
+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 985543 788999999999999998654 37889999999999999863
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=4.3e-24 Score=207.14 Aligned_cols=301 Identities=14% Similarity=0.100 Sum_probs=183.3
Q ss_pred CCEEEEEcCCCCCccc----cCCcccCCCCCCCEEeCCCCcccc----cCCcCCCCCCCCCEEECCCCcCcccCCccccC
Q 040974 59 GRVDNITLPAKGLKGK----LHDFSFSLFPHLAYLDLSYNKLFG----TIPPQISNLTNLIHLYFGGNQFSGNIPPEVGL 130 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 130 (369)
+.++.+++++|.+.+. ++.. +..+++|++|+++++.+++ .++..+..+++|++|++++|.+.+ ++..+..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 5789999999876544 2222 4578889999998888762 234445678899999999887763 5566667
Q ss_pred CCCCcEEEccCCcCC--------------------------CCCCccccCCCCCcEEEeeccccCCCCC-ccCCCCCCCC
Q 040974 131 MSHLMFLYIDTNHLD--------------------------GSIPPELGQLSSIVELSLFSNHLNGSVP-PSLSNLTDLF 183 (369)
Q Consensus 131 l~~L~~L~l~~~~~~--------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 183 (369)
+++|++|+++..... ..++..+..+++|++|++++|.+..... ..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 777777777642211 1223333344555555555554321111 2234555555
Q ss_pred EEEccCccccc-cCCcCCcCCCCCcEEEccC-----------CcCCCC-CcccccCCCCcceeeccccccccccCccccC
Q 040974 184 ILFLQDNSFSG-FIPPDIGNSKSMSVLYLSS-----------NKFSGP-IPLSFGNLSNLNSLHLYGNSVSGSIPSSLGK 250 (369)
Q Consensus 184 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 250 (369)
+|++.+ .+.+ .++.....+++|++|++++ +.++.. .......+++|++|++..+.+++..+..+..
T Consensus 322 ~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 555552 2211 1111223456677777763 233221 1112344677777777666666554444443
Q ss_pred -CCCCCEEEcc----CCCCccc-----cchhhhcCCCCCEEEccCCc--CcccCCccc-cCCCCCCEEEccCCcCccc-C
Q 040974 251 -LKSLFNLQLK----GNQLTGY-----IPSSFRNLTGLLSLLLSQNK--LFGSIPDEI-GKMRSLSILDLSQNQFKGV-L 316 (369)
Q Consensus 251 -~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~i~~~-~ 316 (369)
+++|++|+++ .+.+++. .+..+.++++|+.|++++|. +.+.....+ ..+++|+.|++++|++++. +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 7788888886 3445532 22335667888888886543 443322222 3478999999999998753 3
Q ss_pred CccccCCCCCCEEEccCCcccccCC-ccCc-CCCCCEEEccCCeeccc
Q 040974 317 PPSVSNLTNLKELVLLYNNLSGSIP-PLLE-NPMLTQLSLDNNHFTGY 362 (369)
Q Consensus 317 ~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~-~~~L~~L~l~~n~~~~~ 362 (369)
+..+..+++|++|++++|.+++... .... .++|++|++++|+++..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4455788999999999999875433 3322 28999999999998754
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6.6e-24 Score=205.81 Aligned_cols=301 Identities=12% Similarity=0.019 Sum_probs=179.4
Q ss_pred CEEEEEcCCCCC-ccccCCcccCCCCCCCEEeCCCCccccc----CCcCCCCCCCCCEEECCCCcCc----ccCCccccC
Q 040974 60 RVDNITLPAKGL-KGKLHDFSFSLFPHLAYLDLSYNKLFGT----IPPQISNLTNLIHLYFGGNQFS----GNIPPEVGL 130 (369)
Q Consensus 60 ~l~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~ 130 (369)
+++.++++++.. ...........+++|++|++++|.+++. ++..+..+++|++|+++++.+. ..++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 499999998862 2111111135789999999999988755 2234567899999999999886 344555678
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccC---CCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCc
Q 040974 131 MSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLN---GSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMS 207 (369)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 207 (369)
+++|++|++++|.+.+ ++..+..+++|++|+++..... ......+..+++|+.+++.++... .++..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCc
Confidence 9999999999998874 5667778888999988753221 122233444555555555443211 2333344455555
Q ss_pred EEEccCCcCCCCCc-ccccC------------------------CCCcceeeccc-----------ccccccc-CccccC
Q 040974 208 VLYLSSNKFSGPIP-LSFGN------------------------LSNLNSLHLYG-----------NSVSGSI-PSSLGK 250 (369)
Q Consensus 208 ~L~l~~~~~~~~~~-~~~~~------------------------~~~L~~L~l~~-----------~~~~~~~-~~~l~~ 250 (369)
+|++++|.+.+... ..+.. +++|++|++++ +.+++.. ......
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 55555554332111 11233 44555555552 2222111 111223
Q ss_pred CCCCCEEEccCCCCccccchhhhc-CCCCCEEEcc----CCcCccc-----CCccccCCCCCCEEEccCCc--CcccCCc
Q 040974 251 LKSLFNLQLKGNQLTGYIPSSFRN-LTGLLSLLLS----QNKLFGS-----IPDEIGKMRSLSILDLSQNQ--FKGVLPP 318 (369)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--i~~~~~~ 318 (369)
+++|++|++..+.+++.....+.. +++|+.|++. .+.+.+. .+..+..+++|+.|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 556666666555555444444433 6667777775 3334321 11224457788888886543 4433333
Q ss_pred cc-cCCCCCCEEEccCCccccc-CCccCcC-CCCCEEEccCCeeccc
Q 040974 319 SV-SNLTNLKELVLLYNNLSGS-IPPLLEN-PMLTQLSLDNNHFTGY 362 (369)
Q Consensus 319 ~l-~~~~~L~~L~l~~n~~~~~-~~~~~~~-~~L~~L~l~~n~~~~~ 362 (369)
.+ ..+++|+.|++++|++++. ++..+.. ++|++|++++|++++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 33 3478899999999988763 2333333 8899999999998654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.2e-20 Score=156.37 Aligned_cols=186 Identities=23% Similarity=0.323 Sum_probs=146.5
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccC
Q 040974 45 TSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNI 124 (369)
Q Consensus 45 ~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 124 (369)
...|.|.++.|... .+. .++. .-.++|++|++++|++++..+..|..+++|++|++++|.+.+..
T Consensus 4 ~C~C~~~~v~c~~~-----------~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ-----------GRT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS-----------CCS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC-----------Ccc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 34578888888642 222 2232 22468999999999998777777889999999999999998666
Q ss_pred CccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCC
Q 040974 125 PPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSK 204 (369)
Q Consensus 125 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 204 (369)
+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66678899999999999998866666678899999999999998877777788889999999999988876666678888
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCC
Q 040974 205 SMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLK 252 (369)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (369)
+|++|++++|.+.. .++.|+.|++..|.+++.+|..++.++
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 99999998886642 456788888888888888777666554
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.2e-19 Score=164.37 Aligned_cols=244 Identities=14% Similarity=0.103 Sum_probs=181.7
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCC-
Q 040974 47 PCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIP- 125 (369)
Q Consensus 47 ~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 125 (369)
.|.++.|.|+ +++++ .+|.. + .+++++|+|++|+++...+++|.++++|++|+|++|.+.+.++
T Consensus 8 ~C~~~~v~C~-----------~~~Lt-~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 8 HCSNRVFLCQ-----------ESKVT-EIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp EEETTEEEEE-----------STTCC-SCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred EeeCCEEEec-----------CCCCC-ccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 3556556664 34444 44544 3 3689999999999997777889999999999999999865444
Q ss_pred ccccCCCCCcE-EEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccC-ccccccCCcCCcCC
Q 040974 126 PEVGLMSHLMF-LYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQD-NSFSGFIPPDIGNS 203 (369)
Q Consensus 126 ~~l~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l 203 (369)
..|.+++++++ +.+..|.++...+..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......+..+
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 56888988775 56677888877788899999999999999999877666666777888888865 45665555566665
Q ss_pred C-CCcEEEccCCcCCCCCcccccCCCCcceeeccc-cccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEE
Q 040974 204 K-SMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYG-NSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSL 281 (369)
Q Consensus 204 ~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (369)
. .++.|++++|.+....+..+ ...+|+++++.+ |.++...+..|..+++|+.|++++|.++...+.. +.+|+.|
T Consensus 153 ~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L 228 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKL 228 (350)
T ss_dssp BSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEE
T ss_pred chhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHh
Confidence 4 68899999999884333333 456899999975 5666555567888999999999999998554444 4567777
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCC
Q 040974 282 LLSQNKLFGSIPDEIGKMRSLSILDLSQN 310 (369)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (369)
.+.++.-....| .+..+++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 766654444555 3678899999999764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.8e-20 Score=153.38 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=63.0
Q ss_pred EEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcc
Q 040974 112 HLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS 191 (369)
Q Consensus 112 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (369)
.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4444444444 233222 2355555555555553333334455555555555555443333334444444444444444
Q ss_pred ccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCC
Q 040974 192 FSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (369)
++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44333333344444444444444444332223333344444444444333322222333333333333333
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.7e-19 Score=163.22 Aligned_cols=240 Identities=21% Similarity=0.185 Sum_probs=184.8
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCcE-EEee
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIP-PELGQLSSIVE-LSLF 164 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~ 164 (369)
++++.++++++ .+|..+ .+++++|+|++|.++...+..|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 566655 3689999999999996666789999999999999999765444 46788888876 5556
Q ss_pred ccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCC-cCCCCCcccccCCC-Ccceeecccccccc
Q 040974 165 SNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSN-KFSGPIPLSFGNLS-NLNSLHLYGNSVSG 242 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 242 (369)
.|++....+..+.++++|++|++++|.+....+..+....++..+++.++ .+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 68888778888999999999999999998666666666778888888764 45433344555554 68899999999985
Q ss_pred ccCccccCCCCCCEEEccC-CCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040974 243 SIPSSLGKLKSLFNLQLKG-NQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVS 321 (369)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 321 (369)
..+..+ ...+|+++++.+ |.++...+..|..+++|+.|++++|.+.. .|. ..+.+|+.|.+.++.-.+.+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-Cch
Confidence 555444 456799999975 56665556678999999999999999984 443 346778888877776554666 478
Q ss_pred CCCCCCEEEccCC
Q 040974 322 NLTNLKELVLLYN 334 (369)
Q Consensus 322 ~~~~L~~L~l~~n 334 (369)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 8999999999764
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=9.2e-23 Score=197.81 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=79.1
Q ss_pred CCCcceeeccccccccccCcccc-CCCCCCEEEcc--C----CCCccc-----cchhhhcCCCCCEEEccCCcCcccCCc
Q 040974 227 LSNLNSLHLYGNSVSGSIPSSLG-KLKSLFNLQLK--G----NQLTGY-----IPSSFRNLTGLLSLLLSQNKLFGSIPD 294 (369)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 294 (369)
+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.. .+..+..+++|+.|++++ .+.+....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44445554444444332222222 35677777776 2 233311 112245567777777765 44433333
Q ss_pred cccC-CCCCCEEEccCCcCcccCCccc-cCCCCCCEEEccCCcccccCCccC-c-CCCCCEEEccCCeec
Q 040974 295 EIGK-MRSLSILDLSQNQFKGVLPPSV-SNLTNLKELVLLYNNLSGSIPPLL-E-NPMLTQLSLDNNHFT 360 (369)
Q Consensus 295 ~~~~-~~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~-~-~~~L~~L~l~~n~~~ 360 (369)
.+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.....+ . .++|++|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 3333 7888889998888865544444 568899999999998865443322 2 288999999999875
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.2e-19 Score=171.23 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=155.4
Q ss_pred CCCCCc-----cccce-eeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECC
Q 040974 43 SKTSPC-----AWYGI-SCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFG 116 (369)
Q Consensus 43 ~~~~~c-----~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 116 (369)
....+| .|.++ .|. .++++.++++++.+.+ +|.. + +++|++|++++|.++ .+| ..+++|++|+++
T Consensus 38 ~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls 108 (571)
T 3cvr_A 38 KQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALI-SLP---ELPASLEYLDAC 108 (571)
T ss_dssp TTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECC
T ss_pred ccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEcc
Confidence 455666 68888 564 3479999999999876 6654 3 478999999999998 556 457899999999
Q ss_pred CCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccC
Q 040974 117 GNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFI 196 (369)
Q Consensus 117 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 196 (369)
+|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+.+ +|. .+++|++|++++|.++. +
T Consensus 109 ~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 109 DNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 999985 666 654 99999999999885 555 67899999999999885 444 56889999999998886 4
Q ss_pred CcCCcCCCCCcEEEccCCcCCCCCcccccCCCCc-------ceeeccccccccccCccccCCCCCCEEEccCCCCccccc
Q 040974 197 PPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNL-------NSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIP 269 (369)
Q Consensus 197 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 269 (369)
+. +. ++|++|++++|.+. .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 54 88999999999887 4554 443 56 88888888887 456666668888888888888877766
Q ss_pred hhhhcC
Q 040974 270 SSFRNL 275 (369)
Q Consensus 270 ~~~~~~ 275 (369)
..+..+
T Consensus 248 ~~l~~l 253 (571)
T 3cvr_A 248 ESLSQQ 253 (571)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=8.3e-23 Score=198.12 Aligned_cols=303 Identities=14% Similarity=0.064 Sum_probs=154.7
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCC-ccccc-CCcCCCCCCCCCEEECCCCcCcccCCccc----cCCC
Q 040974 59 GRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN-KLFGT-IPPQISNLTNLIHLYFGGNQFSGNIPPEV----GLMS 132 (369)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~ 132 (369)
.+++.++++++.+.+.........+++|++|++++| .+++. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 357777777776655443331225677777777776 44322 23333456777777777776554333222 3556
Q ss_pred CCcEEEccCCc--CCCC-CCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCcc------------------
Q 040974 133 HLMFLYIDTNH--LDGS-IPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNS------------------ 191 (369)
Q Consensus 133 ~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------ 191 (369)
+|++|++++|. +... ....+..+++|++|++++|......+..+..+++|++|++..+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777665 1110 01112345677777776652111122233334444444332221
Q ss_pred --------ccc----cCCcCCcCCCCCcEEEccCCcCCCCC-cccccCCCCcceeecccc--------------------
Q 040974 192 --------FSG----FIPPDIGNSKSMSVLYLSSNKFSGPI-PLSFGNLSNLNSLHLYGN-------------------- 238 (369)
Q Consensus 192 --------~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~-------------------- 238 (369)
+.. .++..+..+++|++|++++|.+.+.. ...+..+++|++|++.+|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEE
Confidence 000 01111113455666666666543211 112334555555555554
Q ss_pred -------------ccccccCccc-cCCCCCCEEEccCCCCccccchhhh-cCCCCCEEEcc--C----CcCccc-----C
Q 040974 239 -------------SVSGSIPSSL-GKLKSLFNLQLKGNQLTGYIPSSFR-NLTGLLSLLLS--Q----NKLFGS-----I 292 (369)
Q Consensus 239 -------------~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~ 292 (369)
.+++.....+ ..+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+.+. .
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 1111111111 1245555555555555433333332 46777777777 2 233211 1
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccC-CCCCCEEEccCCcccccCCccC-c-CCCCCEEEccCCeeccc
Q 040974 293 PDEIGKMRSLSILDLSQNQFKGVLPPSVSN-LTNLKELVLLYNNLSGSIPPLL-E-NPMLTQLSLDNNHFTGY 362 (369)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~-~-~~~L~~L~l~~n~~~~~ 362 (369)
+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.....+ . .++|++|++++|++++.
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 11245567788888866 555443344443 7889999999998876544433 2 38899999999988644
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.7e-18 Score=145.81 Aligned_cols=160 Identities=22% Similarity=0.278 Sum_probs=130.7
Q ss_pred CCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcc
Q 040974 43 SKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSG 122 (369)
Q Consensus 43 ~~~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 122 (369)
.+...|.|.++.|+.. .+ +.+|.. + .++|++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 14 ~~~~~Cs~~~v~c~~~-----------~l-~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK-----------RH-ASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTTS-----------CC-SSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccCC-----------Cc-CccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 4677889988888642 22 234432 2 3789999999999998888899999999999999999986
Q ss_pred cCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcC
Q 040974 123 NIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGN 202 (369)
Q Consensus 123 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 202 (369)
..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 66667789999999999999998666666788999999999999988 56777888899999999999888666667888
Q ss_pred CCCCcEEEccCCcCCC
Q 040974 203 SKSMSVLYLSSNKFSG 218 (369)
Q Consensus 203 l~~L~~L~l~~~~~~~ 218 (369)
+++|+.|++.+|.+..
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 8889999998887764
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4.6e-19 Score=156.13 Aligned_cols=171 Identities=24% Similarity=0.383 Sum_probs=86.0
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
..+++|+.|++++|.+++. + .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+++ + +.+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3455566666666655422 2 24555666666666666553 222 5556666666666665542 2 23555555555
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccc
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSV 240 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (369)
|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 55555555432 2344555555555555555432 334445555555555555443222 44445555555555544
Q ss_pred ccccCccccCCCCCCEEEccCCCCc
Q 040974 241 SGSIPSSLGKLKSLFNLQLKGNQLT 265 (369)
Q Consensus 241 ~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (369)
++. + .+..+++|+.|++++|.+.
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-h-hhccCCCCCEEECcCCccc
Confidence 422 1 2444445555555544443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1e-18 Score=168.36 Aligned_cols=190 Identities=22% Similarity=0.320 Sum_probs=137.0
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEee
Q 040974 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLF 164 (369)
Q Consensus 85 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 164 (369)
.+..+.+..+.+.+... +..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34455666666654332 356788888888888887 344 47788889999998888875433 7788888888888
Q ss_pred ccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccccccc
Q 040974 165 SNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSI 244 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 244 (369)
+|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 8887642 3577788888888888887743 4567778888888888877744 45677778888888888776554
Q ss_pred CccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcc
Q 040974 245 PSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFG 290 (369)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (369)
+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 4 66777788888877777643 346677777777777777653
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=6.9e-18 Score=142.29 Aligned_cols=151 Identities=20% Similarity=0.197 Sum_probs=120.4
Q ss_pred EEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCC
Q 040974 63 NITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN 142 (369)
Q Consensus 63 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 142 (369)
.++++++.+. .+|.. + .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3444455544 34443 2 268999999999998777778899999999999999998778888999999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCC
Q 040974 143 HLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 143 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988555556778888999999988888777788888888888888888888766666777888888888888765
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=9.7e-18 Score=159.92 Aligned_cols=185 Identities=22% Similarity=0.331 Sum_probs=129.2
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEee
Q 040974 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLF 164 (369)
Q Consensus 85 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 164 (369)
+|+.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78999999998875 55544 378999999999888 566 457888999999888885 565 554 88888888
Q ss_pred ccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccccccc
Q 040974 165 SNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSI 244 (369)
Q Consensus 165 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 244 (369)
+|.+.+ +|. .+++|++|++++|.++. ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888875 444 57888888888888775 333 46778888888887775 444 44 77888888888776 44
Q ss_pred CccccCCCCC-------CEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCcccc
Q 040974 245 PSSLGKLKSL-------FNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIG 297 (369)
Q Consensus 245 ~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 297 (369)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 44 432 55 66777777666 3455555566667777766666654444433
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=6.2e-18 Score=148.87 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=153.3
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccC
Q 040974 134 LMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSS 213 (369)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 213 (369)
+..+.+....+.+. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 33444555555432 2245688999999999988744 347889999999999999886443 88999999999999
Q ss_pred CcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCC
Q 040974 214 NKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIP 293 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (369)
|.+.+ .+ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99874 33 488899999999999998753 4578899999999999999855 578889999999999999985544
Q ss_pred ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc
Q 040974 294 DEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~ 339 (369)
+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++.+.
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 7889999999999999985 34 488899999999999998753
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.5e-18 Score=165.69 Aligned_cols=174 Identities=23% Similarity=0.362 Sum_probs=112.3
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+. +. +..+++|++|+|++|.+.+ + +.+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 3456667777777776653 22 366677777777777776633 32 6667777777777776663 2 2566677777
Q ss_pred EEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccc
Q 040974 160 ELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNS 239 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (369)
+|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 777777776532 3466677777777777766643 456667777777777777665444 6667777777777777
Q ss_pred cccccCccccCCCCCCEEEccCCCCccc
Q 040974 240 VSGSIPSSLGKLKSLFNLQLKGNQLTGY 267 (369)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (369)
+.+. ..+..+++|+.|++++|.+.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6643 2466677777777777766543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=7.8e-18 Score=141.97 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=83.5
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeecc
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 166 (369)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 3444332 45666666666666555555666666666666666666555555666666666666666
Q ss_pred ccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccc
Q 040974 167 HLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSV 240 (369)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (369)
.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 65544444455555555555555555544444455555555555555555443333444444444444444443
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=3.1e-18 Score=155.57 Aligned_cols=176 Identities=24% Similarity=0.207 Sum_probs=141.2
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCcccc-CCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeec
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVG-LMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFS 165 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 165 (369)
+.+++++++++ .+|..+. +.++.|+|++|.+.+..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 4565443 4689999999999877777777 899999999999999877777888999999999999
Q ss_pred cccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccc---cCCCCcceeecccccccc
Q 040974 166 NHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSF---GNLSNLNSLHLYGNSVSG 242 (369)
Q Consensus 166 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 242 (369)
|++....+..+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99887777778889999999999999887777888889999999999998885444444 567888888888888875
Q ss_pred ccCccccCCCC--CCEEEccCCCCc
Q 040974 243 SIPSSLGKLKS--LFNLQLKGNQLT 265 (369)
Q Consensus 243 ~~~~~l~~~~~--L~~L~l~~~~~~ 265 (369)
..+..+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55455666665 477888888775
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=8.7e-18 Score=141.68 Aligned_cols=153 Identities=21% Similarity=0.205 Sum_probs=132.6
Q ss_pred EEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCC-cCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 63 NITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIP-PQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 63 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
.++++++.+. .+|.. + .+.+++|++++|.+++..+ +.|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777765 34543 2 3457899999999987644 5688999999999999999987788899999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
|.+++..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999977777799999999999999999988889999999999999999999988888999999999999999988743
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.9e-18 Score=154.94 Aligned_cols=175 Identities=24% Similarity=0.231 Sum_probs=148.7
Q ss_pred EEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCC-CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 63 NITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQIS-NLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 63 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
.++++++.+. .+|.. + .+.++.|+|++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5667777765 34543 2 34689999999999988888887 999999999999999988888899999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCC---cCCCCCcEEEccCCcCCC
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDI---GNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 218 (369)
|.++...+..|..+++|++|++++|.+....+..+.++++|++|++++|.++......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997777788999999999999999998888899999999999999999986554445 568999999999999986
Q ss_pred CCcccccCCCC--cceeeccccccc
Q 040974 219 PIPLSFGNLSN--LNSLHLYGNSVS 241 (369)
Q Consensus 219 ~~~~~~~~~~~--L~~L~l~~~~~~ 241 (369)
..+..+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66567777776 488999999876
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=139.73 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=91.8
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeec
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIP-PEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFS 165 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 165 (369)
+.++++++.++ .+|..+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777766 345433 2345677777777765433 3456667777777777766655555666666666666666
Q ss_pred cccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccc
Q 040974 166 NHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 166 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (369)
|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555666666666666666666555555555566666666666555444555555555555555555443
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2e-19 Score=177.37 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=133.3
Q ss_pred CCCCHHHHHHHHHHHHhcccCCccccCCCcCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcccCCCCC
Q 040974 6 SSESNEEADALLKWKASLQNHNRSLLSSWVKDTTNVSSKTSPCAWYGISCNDAGRVDNITLPAKGLKGKLHDFSFSLFPH 85 (369)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~ 85 (369)
.+..+.++++++.+..++.+..+..-..|. ........|.+..++. ++++.+++.++.+... +.. +.....
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~~-~l~~l~ 197 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQPT------GDSTPSGTATNSAVST-PLTPKIELFANGKDEA-NQA-LLQHKK 197 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCCCc------CCCCccccCCCceecC-CccceEEeeCCCCCcc-hhh-HhhcCc
Confidence 344567789999999998886666555665 3444556787776654 5789999988877643 222 222222
Q ss_pred CC-----EEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 86 LA-----YLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 86 L~-----~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
|+ .+++..+.+. ..++.+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|..+++|++
T Consensus 198 Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred cCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 22 3333344444 56788899999999999999998 77877889999999999999998 78888999999999
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCC-Ccceeeccccc
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLS-NLNSLHLYGNS 239 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 239 (369)
|+|++|.+. .+|..+.++++|++|++++|.+. .+|..|..+++|++|+|++|.+.+..+..+.... .+..+++++|.
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 999999998 66888999999999999999987 5677799999999999999999877776654332 22346778887
Q ss_pred cccccCccccCCCCCCEEEccCC
Q 040974 240 VSGSIPSSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~ 262 (369)
+++..|. .|+.|+++.|
T Consensus 353 l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 353 PEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCCCC------C---------
T ss_pred ccCcCcc------ccceeEeecc
Confidence 7765554 3445555554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=4.9e-17 Score=137.97 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=66.1
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEc
Q 040974 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYL 211 (369)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (369)
++|++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44444444444444433444444444444444444444333333444455555555555444433334445555555555
Q ss_pred cCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCc
Q 040974 212 SSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLT 265 (369)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (369)
++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554 34444455555555555555555444444555556666666665554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=138.12 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=53.0
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEE
Q 040974 107 LTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILF 186 (369)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 186 (369)
+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 223 3444444444444444332 112344444444444444444333333344444444444
Q ss_pred ccCccccccCCcCCcCCCCCcEEEccCCc-CCCCCcccccCCCCcceeeccccccc
Q 040974 187 LQDNSFSGFIPPDIGNSKSMSVLYLSSNK-FSGPIPLSFGNLSNLNSLHLYGNSVS 241 (369)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (369)
+++|.++...+..+..+++|++|++++|. +. ..+ .+..+++|++|++++|.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 44444443333333444444444444443 22 122 2334444444444444433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.7e-17 Score=136.21 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=79.6
Q ss_pred CCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEc
Q 040974 180 TDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQL 259 (369)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (369)
++|++|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344444444444441 22 34445555555555553331 124455556666666666655444555556666666666
Q ss_pred cCCCCccccchhhhcCCCCCEEEccCCc-CcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 260 KGNQLTGYIPSSFRNLTGLLSLLLSQNK-LFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
++|.+.+..+..+..+++|+.|++++|. +. ..+ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 6666655455555666666666666665 43 223 355566666666666666532 2 4555666666666666654
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=6.4e-18 Score=151.58 Aligned_cols=279 Identities=12% Similarity=0.088 Sum_probs=160.6
Q ss_pred CEEEEEcCCCCCccccCCcccCC-CCCCCEEeCCCCccc--ccCCcCCCCCCCCCEEECCCCcCcccCCccccC------
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSL-FPHLAYLDLSYNKLF--GTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGL------ 130 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~------ 130 (369)
+++.+++++.--...+. . +.. +++|++|+|++|++. ......+ +.++.+.+..+.+ .+..|.+
T Consensus 26 ~l~~L~l~g~i~~~~~~-~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFR-H-LRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HCSEEEEEEEECHHHHH-H-HHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred ceeEEEEeccccHHHHH-H-HHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccc
Confidence 57777777531111111 1 333 788999999999887 2232222 2345555555533 3345566
Q ss_pred --CCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccc----cccCCcCCcCCC
Q 040974 131 --MSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF----SGFIPPDIGNSK 204 (369)
Q Consensus 131 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~~~l~~l~ 204 (369)
+++|+.+++.+ .++......|.+|++|+.|++.++.+..+.+..|.++.++..+....... ..+....|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88999999988 77766667788889999999988887767777888888777777655321 222233444555
Q ss_pred CCc-EEEccCCcCCCCCcccc----cCCCCcceeeccccccccccCccc-cCCCCCCEEEccCCCCccccchhhhcCCCC
Q 040974 205 SMS-VLYLSSNKFSGPIPLSF----GNLSNLNSLHLYGNSVSGSIPSSL-GKLKSLFNLQLKGNQLTGYIPSSFRNLTGL 278 (369)
Q Consensus 205 ~L~-~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 278 (369)
.|+ .+.+.... ..+..+ ....+++.+.+.+.-.. .....+ ..+++|+.+++++|.++......|.++++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 555 34443221 111110 11234444444433111 111111 125666666666666665555566666666
Q ss_pred CEEEccCCcCcccCCccccCCCCCC-EEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEE
Q 040974 279 LSLLLSQNKLFGSIPDEIGKMRSLS-ILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLS 353 (369)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~ 353 (369)
+.+++.++ +.......|..+++|+ .+++.+ .++...+.+|..|++|+.+++.+|.+....+..|.. ++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666665 4445555666666666 666666 555455566666666666666666666555555544 6666654
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.73 E-value=7.4e-16 Score=141.33 Aligned_cols=266 Identities=9% Similarity=0.049 Sum_probs=186.1
Q ss_pred CCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcE
Q 040974 81 SLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVE 160 (369)
Q Consensus 81 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 160 (369)
..+..++.+.+.. .++.+-..+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .++......|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 4456777777765 3444566677775 6888888765 554556666664 688888875 455455667788888888
Q ss_pred EEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccccc
Q 040974 161 LSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSV 240 (369)
Q Consensus 161 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (369)
+++.++.+..+....|. +.+|+.+.+..+ +..+...+|..+++|+.+++..+ +......+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88887777755555565 578888888744 55566677778888888888764 33344455666 678888884 345
Q ss_pred ccccCccccCCCCCCEEEccCCCCc-----cccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCccc
Q 040974 241 SGSIPSSLGKLKSLFNLQLKGNQLT-----GYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGV 315 (369)
Q Consensus 241 ~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 315 (369)
+......|.++++|+.+++.++.+. ......|.++++|+.+.+.+ .+.......|..+.+|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5566677888888888888776654 35566788888888888884 365566677888888888888654 6556
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccCcC--CCCCEEEccCCee
Q 040974 316 LPPSVSNLTNLKELVLLYNNLSGSIPPLLEN--PMLTQLSLDNNHF 359 (369)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~L~~L~l~~n~~ 359 (369)
...+|..+ +|+.+++.+|.+.......+.. ..++.|.+-.+.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66778888 8888888888776555555544 5677888877654
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=1.3e-15 Score=139.71 Aligned_cols=264 Identities=11% Similarity=0.064 Sum_probs=202.6
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.+.++.. ...++..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+....+..|.+|++|+.+++
T Consensus 114 ~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3445555542 235666668876 7999999876 665677788885 699999987 566577788999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCC
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGP 219 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (369)
..+.++......|. +.+|+.+.+..+ +..+....|.+|++|+.+.+..+ ++.+...+|.. .+|+.+.+.. .+...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEE
Confidence 99888854444554 689999999854 66567788999999999999875 55556667776 7899999954 35545
Q ss_pred CcccccCCCCcceeeccccccc-----cccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCc
Q 040974 220 IPLSFGNLSNLNSLHLYGNSVS-----GSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPD 294 (369)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 294 (369)
...+|.++++|+.+.+.++.+. ......|.++++|+.+++.+ .+.......|.++.+|+.+.+..+ +......
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 5678899999999999887654 35667888999999999985 476667788999999999999665 5556677
Q ss_pred cccCCCCCCEEEccCCcCcccCCccccCCC-CCCEEEccCCccc
Q 040974 295 EIGKMRSLSILDLSQNQFKGVLPPSVSNLT-NLKELVLLYNNLS 337 (369)
Q Consensus 295 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~L~~L~l~~n~~~ 337 (369)
.|..+ +|+.+++.++.+.......+..++ .++.|++..+.+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88888 999999999988766666777774 7888988877543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.6e-17 Score=143.99 Aligned_cols=147 Identities=23% Similarity=0.365 Sum_probs=56.9
Q ss_pred CCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCE
Q 040974 105 SNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFI 184 (369)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 184 (369)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++.+. +. +.. ++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCE
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccE
Confidence 33444444444444443 222 333444444444444444322 11 34444444444444444321 11 111 34444
Q ss_pred EEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCC
Q 040974 185 LFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQL 264 (369)
Q Consensus 185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (369)
|++++|.++.. ..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 111 L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 111 LFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 44444443321 1233444444444444444321 1 233344444444444444322 2233344444444444443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=8.8e-17 Score=139.31 Aligned_cols=170 Identities=21% Similarity=0.252 Sum_probs=137.8
Q ss_pred CCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceee
Q 040974 155 LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLH 234 (369)
Q Consensus 155 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (369)
+.++..++++++.+.... .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445667777777776432 467789999999999988843 3 67889999999999999885444 88899999999
Q ss_pred ccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcc
Q 040974 235 LYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKG 314 (369)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 314 (369)
+++|.+++. +. +.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 999998754 32 333 8999999999998854 3588899999999999999754 3 57889999999999999986
Q ss_pred cCCccccCCCCCCEEEccCCccccc
Q 040974 315 VLPPSVSNLTNLKELVLLYNNLSGS 339 (369)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~n~~~~~ 339 (369)
. ..+..+++|+.|++++|++.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 5688899999999999998855
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=8e-17 Score=144.42 Aligned_cols=276 Identities=13% Similarity=0.078 Sum_probs=191.9
Q ss_pred CCCCCCEEeCCCCcccccCCcCCCC-CCCCCEEECCCCcCc--ccCCccccCCCCCcEEEccCCcCCCCCCccccC----
Q 040974 82 LFPHLAYLDLSYNKLFGTIPPQISN-LTNLIHLYFGGNQFS--GNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQ---- 154 (369)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---- 154 (369)
.++++++|.+++. +.......+.. +++|++|+|++|.+. ...... ++.++.+.+..+.+. ...|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhcccccc
Confidence 3567899998864 21111112223 789999999999886 222222 233455666655433 345667
Q ss_pred ----CCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCc----CCCCCcccccC
Q 040974 155 ----LSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNK----FSGPIPLSFGN 226 (369)
Q Consensus 155 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~~~~ 226 (369)
+++|+.|.+.+ .+..+....|.+|++|+.+++.++.+..+.+.+|..+.++.++...... ........|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 7877788889999999999999999887888888888888777766532 22223345666
Q ss_pred CCCcc-eeeccccc-cccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040974 227 LSNLN-SLHLYGNS-VSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSI 304 (369)
Q Consensus 227 ~~~L~-~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (369)
+..|+ .+.+.... +.......-....+++.+.+.++-...........+++|+.+++++|.+.......|..+++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 66776 44443321 11111111123467788888775332222222234799999999999998777888999999999
Q ss_pred EEccCCcCcccCCccccCCCCCC-EEEccCCcccccCCccCcC-CCCCEEEccCCeecccCCC-Ccc
Q 040974 305 LDLSQNQFKGVLPPSVSNLTNLK-ELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLPH-NVC 368 (369)
Q Consensus 305 L~l~~~~i~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip~-~~~ 368 (369)
+++.++ +......+|..|++|+ .+++.+ .+....+..|.. ++|+++++++|+++ .|++ .|.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~ 318 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFG 318 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhc
Confidence 999998 7767778899999999 999999 777566667766 99999999999988 5553 553
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.5e-19 Score=173.13 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=83.5
Q ss_pred CcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 040974 229 NLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLS 308 (369)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (369)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ .| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46677777777764 344 667777777777777776 556677777777777777777764 44 56777777777777
Q ss_pred CCcCcccC-CccccCCCCCCEEEccCCcccccCCccCc----CCCCCEEEc
Q 040974 309 QNQFKGVL-PPSVSNLTNLKELVLLYNNLSGSIPPLLE----NPMLTQLSL 354 (369)
Q Consensus 309 ~~~i~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~----~~~L~~L~l 354 (369)
+|.+++.. |..+..+++|+.|++++|++.+..+.... .++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777654 67777777788888888877765543322 267777753
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.7e-16 Score=125.93 Aligned_cols=133 Identities=26% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCCCcEEEccCCcCC-CCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEE
Q 040974 203 SKSMSVLYLSSNKFS-GPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSL 281 (369)
Q Consensus 203 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (369)
.++|++|++++|.+. +.++..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666665 34455555666666666666666533 445556666666666666654455555555566666
Q ss_pred EccCCcCcccC-CccccCCCCCCEEEccCCcCcccCC---ccccCCCCCCEEEccCCccc
Q 040974 282 LLSQNKLFGSI-PDEIGKMRSLSILDLSQNQFKGVLP---PSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 282 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~L~~L~l~~n~~~ 337 (369)
++++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66655554321 1344455555555555555543322 24444555555555555443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.3e-16 Score=124.99 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCCEEeCCCCccc-ccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 040974 84 PHLAYLDLSYNKLF-GTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 84 ~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 162 (369)
++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44455555554444 33344444444444444444444422 3344444444444444444433333333344444444
Q ss_pred eeccccC
Q 040974 163 LFSNHLN 169 (369)
Q Consensus 163 l~~~~~~ 169 (369)
+++|.+.
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 4444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2.8e-15 Score=123.51 Aligned_cols=132 Identities=27% Similarity=0.346 Sum_probs=105.9
Q ss_pred cEEEccCCcCCCCCcccccCCCCcceeeccccccccccCc-cccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccC
Q 040974 207 SVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPS-SLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQ 285 (369)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (369)
++++++++.+. .+|..+. ..+++|++++|.+++..+. .+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888876 4554443 3888899998888766553 477888899999998888877788888888889999988
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 040974 286 NKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888889998888887778888888888888888888875433
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=5e-15 Score=121.98 Aligned_cols=126 Identities=25% Similarity=0.305 Sum_probs=68.6
Q ss_pred EEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCc-CCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 63 NITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPP-QISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 63 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
.++++++.+. .+|.. +. ++|++|++++|.+++..+. .|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRD-IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSC-CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccC-CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4555555553 34433 21 2666666666666644443 355666666666666666655555566666666666666
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccc
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF 192 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 192 (369)
|.+++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 665554444455555555555555555544444444444444444444443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.1e-18 Score=165.20 Aligned_cols=107 Identities=30% Similarity=0.375 Sum_probs=83.9
Q ss_pred CCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 040974 253 SLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLL 332 (369)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~ 332 (369)
.|+.|++++|.+++ +|. +..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47888888888875 454 778888888888888887 667778888888888888888875 45 67888888888888
Q ss_pred CCcccccC-CccCcC-CCCCEEEccCCeecccCC
Q 040974 333 YNNLSGSI-PPLLEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 333 ~n~~~~~~-~~~~~~-~~L~~L~l~~n~~~~~ip 364 (369)
+|++.+.. |..+.. ++|++|++++|++++..|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888765 666655 888888888888875433
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6e-16 Score=122.06 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred CCCCEEeCCCCccc-ccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEE
Q 040974 84 PHLAYLDLSYNKLF-GTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELS 162 (369)
Q Consensus 84 ~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 162 (369)
++|+.|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666555 34555555556666666666555532 4455555555555555555543444444455555555
Q ss_pred eeccccCCC-CCccCCCCCCCCEEEccCccccccCC---cCCcCCCCCcEEEc
Q 040974 163 LFSNHLNGS-VPPSLSNLTDLFILFLQDNSFSGFIP---PDIGNSKSMSVLYL 211 (369)
Q Consensus 163 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l 211 (369)
+++|.+.+. .+..+..+++|++|++++|.++...+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555432 12344445555555555554443322 23444444444444
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.8e-14 Score=118.69 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
++|++|++++|.++ .++..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35566666666555 34455555555555555555555444445555555555555555555444444555555555555
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCcc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNS 191 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (369)
++|.+....+..+..+++|++|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 5555443333334444444444444443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=3.6e-16 Score=154.23 Aligned_cols=180 Identities=20% Similarity=0.254 Sum_probs=78.7
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECC-----CCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCC
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFG-----GNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSI 158 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 158 (369)
+.++.|+|.++.+... +..+-....|+.+.+. .+.+. ..++.+..+++|+.|+|++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5677788877776632 3222222223332222 22222 34555666666777777666665 455555566666
Q ss_pred cEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeecccc
Q 040974 159 VELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGN 238 (369)
Q Consensus 159 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
++|+|++|.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 66666666665 45555666666666666666666 44555666666666666666554 44545666666666666666
Q ss_pred ccccccCccccCCC-CCCEEEccCCCCccccc
Q 040974 239 SVSGSIPSSLGKLK-SLFNLQLKGNQLTGYIP 269 (369)
Q Consensus 239 ~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~ 269 (369)
.+++..|..+.... ....+++++|.+.+..|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66555444432211 11124455555554433
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.5e-15 Score=118.42 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCcEEEccCCcCC-CCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEE
Q 040974 204 KSMSVLYLSSNKFS-GPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLL 282 (369)
Q Consensus 204 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 282 (369)
++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444445555555555555555433 3455555566666666655544454555555566666
Q ss_pred ccCCcCccc-CCccccCCCCCCEEEccCCcCcccCC---ccccCCCCCCEEEcc
Q 040974 283 LSQNKLFGS-IPDEIGKMRSLSILDLSQNQFKGVLP---PSVSNLTNLKELVLL 332 (369)
Q Consensus 283 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~L~~L~l~ 332 (369)
+++|.+.+. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 665555432 12344555555555555555554333 244555555555554
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=2.9e-13 Score=124.30 Aligned_cols=282 Identities=12% Similarity=0.043 Sum_probs=148.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
.++.+.++.. + ..+...+|.+|++|+.+++..+ ++..-..+|..+..|+.+.+..+ +.......|.++..++....
T Consensus 72 ~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 72 KVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 5777777643 2 3555666777777777777643 44345566666776666655443 11122222322222111111
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCC--------------
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKS-------------- 205 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-------------- 205 (369)
.. ........|.++++|+.+.+.++. ..+....|.++.+|+.+.+..+ +..+...++..+..
T Consensus 148 ~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 148 EG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp TT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred cc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence 11 111122345555556555554432 2233344555555555555433 22222333333333
Q ss_pred --------CcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCC
Q 040974 206 --------MSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTG 277 (369)
Q Consensus 206 --------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (369)
|+.+.+... +.......+..+..++.+.+..+... .....|..+..++.+...... .....+..+.+
T Consensus 224 ~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~ 298 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSS 298 (394)
T ss_dssp TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTT
T ss_pred hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccccc
Confidence 444444322 11122234555566666666554322 344455556666666554432 22345666777
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccC
Q 040974 278 LLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDN 356 (369)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~ 356 (369)
|+.+.+.++ +......+|..+.+|+.+++..+ ++.....+|.+|.+|+.+++..+ +.......|.. ++|+++++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 888877654 44355566777888888888653 55455667788888888888765 54344445554 7888888765
Q ss_pred C
Q 040974 357 N 357 (369)
Q Consensus 357 n 357 (369)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.4e-14 Score=116.27 Aligned_cols=133 Identities=28% Similarity=0.301 Sum_probs=92.8
Q ss_pred CcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccC
Q 040974 206 MSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQ 285 (369)
Q Consensus 206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (369)
.+.++++++.+.. .|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777777663 33322 25778888888877765555667777888888888877766566667777788888888
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 040974 286 NKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77775555556777778888888877775555556677777788887777765443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=5.9e-14 Score=113.94 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=68.6
Q ss_pred CCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEe
Q 040974 84 PHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSL 163 (369)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 163 (369)
++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 57777777777777555566677777777777777776554555666677777777777666444444556666666666
Q ss_pred eccccCCCCCccCCCCCCCCEEEccCcccc
Q 040974 164 FSNHLNGSVPPSLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 193 (369)
++|.+.+..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 666655444333444555555555555443
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.4e-14 Score=117.00 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=85.0
Q ss_pred CEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeecc
Q 040974 87 AYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSN 166 (369)
Q Consensus 87 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 166 (369)
+.+++++++++ .+|..+ .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677777766 444433 256777777777776 56666777777777777777777655566777777777777777
Q ss_pred ccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCC
Q 040974 167 HLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFS 217 (369)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (369)
.+....+..+.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 776666666666777777777777666555455666666666666666554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.6e-14 Score=114.48 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=78.0
Q ss_pred cCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCE
Q 040974 201 GNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLS 280 (369)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 280 (369)
..+++|++|++++|.+.. ++......++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345556666666665552 232222223666666666666543 34566666777777776666544444566667777
Q ss_pred EEccCCcCcccCCc--cccCCCCCCEEEccCCcCcccCCc----cccCCCCCCEEEccCCccc
Q 040974 281 LLLSQNKLFGSIPD--EIGKMRSLSILDLSQNQFKGVLPP----SVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 281 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~~~----~l~~~~~L~~L~l~~n~~~ 337 (369)
|++++|.+. ..+. .+..+++|+.|++++|++.+ .+. .+..+++|+.|++++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777776664 3333 45566777777777776663 333 2566677777777776554
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=3e-12 Score=117.48 Aligned_cols=287 Identities=11% Similarity=0.092 Sum_probs=152.0
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCCEEeCCCC---cccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEE
Q 040974 61 VDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYN---KLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFL 137 (369)
Q Consensus 61 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 137 (369)
++.+.++.. ...+...+|.+|.+|+.+.+..+ .++..-..+|..|.+|+.+.+..+ +.......|.++.+|+.+
T Consensus 66 L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555555542 23455555666666666666543 244344555666666666555543 222344455566666666
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCc--
Q 040974 138 YIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNK-- 215 (369)
Q Consensus 138 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-- 215 (369)
.+... +.......|..+.+|+.+.+..+ +..+....|.+ .+|+.+.+.... ......++..+.++.........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccc
Confidence 66533 22233344555666666665543 22122223322 345555443321 11222233333333333221110
Q ss_pred ----------------------------------CCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccC
Q 040974 216 ----------------------------------FSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKG 261 (369)
Q Consensus 216 ----------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (369)
+......+|.++..|+.+.+..... ......|..++.|+.+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC
Confidence 1111223566677777777765433 24555677778888888854
Q ss_pred CCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 040974 262 NQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
.+.......|.++.+|+.+.+.++ +......+|..+.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.... .
T Consensus 298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~ 372 (394)
T 4gt6_A 298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--N 372 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--H
T ss_pred -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--h
Confidence 355455667888888888888754 44455667888888888888654 554556678888888888888875432 1
Q ss_pred ccCcCCCCCEEEccCCeec
Q 040974 342 PLLENPMLTQLSLDNNHFT 360 (369)
Q Consensus 342 ~~~~~~~L~~L~l~~n~~~ 360 (369)
....+.+|+.+.+..+.+.
T Consensus 373 ~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCBCCCCC-----------
T ss_pred hhhccCCCCEEEeCCCCEE
Confidence 2233377888877766544
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=3.1e-14 Score=115.46 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=51.0
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
+.++++|++|++++|+++. ++......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445555556665555552 232222222555555555555532 3445555555555555555533222234455555
Q ss_pred EEEeeccccCCCCCc--cCCCCCCCCEEEccCcccc
Q 040974 160 ELSLFSNHLNGSVPP--SLSNLTDLFILFLQDNSFS 193 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~ 193 (369)
+|++++|.+.. .+. .+..+++|++|++++|.+.
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555432 222 3344444444444444443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=3.1e-12 Score=117.43 Aligned_cols=277 Identities=11% Similarity=-0.013 Sum_probs=181.3
Q ss_pred cccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccc
Q 040974 73 GKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPEL 152 (369)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 152 (369)
..+...+|.+|.+|+.+.+.. .++.+-..+|.+|.+|+.+++.++ +.......|.++.+|+.+.+..+ +.......|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 357777899999999999975 466667889999999999999875 55466678889999998877654 343445566
Q ss_pred cCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcce
Q 040974 153 GQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNS 232 (369)
Q Consensus 153 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 232 (369)
.++..++....... .......|.+|.+|+.+.+.++. ..+....|..+.+|+.+.+..+ +......+|.++..|+.
T Consensus 137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 66654433333222 22445678999999999997653 3356677888999999998766 33233456667777777
Q ss_pred eeccccccc---------------------cccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCccc
Q 040974 233 LHLYGNSVS---------------------GSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGS 291 (369)
Q Consensus 233 L~l~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 291 (369)
+.+..+... ......+..+..++.+.+..+... .....|..+..++.+......+
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i--- 288 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV--- 288 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---
T ss_pred eecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---
Confidence 666544221 111222334444444444443222 3333444555555555444322
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCCeecccCC
Q 040974 292 IPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNNHFTGYLP 364 (369)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n~~~~~ip 364 (369)
....|..+.+|+.+.+..+ +......+|..|.+|+.+++..+ +.......|.. .+|+.+++..+ ++ .|+
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 2235667888999888764 55456678889999999999754 55444455655 89999999776 43 444
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=1.7e-11 Score=112.42 Aligned_cols=276 Identities=11% Similarity=0.108 Sum_probs=196.4
Q ss_pred ccCCcccCCCC-CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCc---CcccCCccccCCCCCcEEEccCCcCCCCCC
Q 040974 74 KLHDFSFSLFP-HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQ---FSGNIPPEVGLMSHLMFLYIDTNHLDGSIP 149 (369)
Q Consensus 74 ~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 149 (369)
.+.+.+|.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..+. +...-...|.++.+|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 56777788885 5999999864 666778899999999999997653 55556678889999999888755 443555
Q ss_pred ccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCC
Q 040974 150 PELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSN 229 (369)
Q Consensus 150 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 229 (369)
..|..+.+|+.+.+... +..+....+.++.+|+.+.+..+ +..+...+|. ...|+.+.+...... ....+|..+..
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccc
Confidence 67889999999999764 33356677889999999999765 4434445554 457888888654221 22233444444
Q ss_pred cceeeccc------------------------------------cccccccCccccCCCCCCEEEccCCCCccccchhhh
Q 040974 230 LNSLHLYG------------------------------------NSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFR 273 (369)
Q Consensus 230 L~~L~l~~------------------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (369)
+....... +.++......|..+..|+.+.+.++... .....|.
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccc
Confidence 44332211 1122233456778889999998765433 5566788
Q ss_pred cCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEE
Q 040974 274 NLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQL 352 (369)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L 352 (369)
+++.|+.+.+.. .+.......|..+.+|+.+++..+ ++.....+|..|.+|+++.+..+ +.......|.. ++|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 899999999964 344456677889999999999864 65566678999999999999754 54333345554 999999
Q ss_pred EccCCee
Q 040974 353 SLDNNHF 359 (369)
Q Consensus 353 ~l~~n~~ 359 (369)
++.++..
T Consensus 363 ~~~~~~~ 369 (394)
T 4gt6_A 363 EYSGSRS 369 (394)
T ss_dssp EESSCHH
T ss_pred EECCcee
Confidence 9998753
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=3.6e-12 Score=102.58 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=59.1
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 62 DNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 62 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
+.++++++.+.. +|.. + .++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 12 ~~l~~s~n~l~~-ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555555542 3332 2 25566666666666655566666666666666666666644444455666666666666
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccC
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
|.+++..+..|..+++|++|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665444444555566666666655543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=5.4e-16 Score=128.46 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccC
Q 040974 103 QISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 103 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
.+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 34444444445544444442 33 4444444444444444444 33333333344444444444443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=1.7e-15 Score=125.41 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=63.0
Q ss_pred cccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCC
Q 040974 223 SFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSL 302 (369)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (369)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.+ .+ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45555556666666655553 33 4555556666666666555 334444445566666666666553 22 34555666
Q ss_pred CEEEccCCcCcccCC-ccccCCCCCCEEEccCCcccccCC
Q 040974 303 SILDLSQNQFKGVLP-PSVSNLTNLKELVLLYNNLSGSIP 341 (369)
Q Consensus 303 ~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~ 341 (369)
+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 666666666653221 245566666666666666655443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=6.1e-12 Score=101.58 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=61.3
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 040974 62 DNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDT 141 (369)
Q Consensus 62 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 141 (369)
+.++++++.+. .+|.. + .++|++|++++|++++..+..|..+++|++|+|++|.+.+..+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666653 44433 2 25666666666666655566666666666666666666644444455666666666666
Q ss_pred CcCCCCCCccccCCCCCcEEEeeccccC
Q 040974 142 NHLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
|.+++..+..|..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666433334555666666666665554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=6.5e-12 Score=101.06 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEc
Q 040974 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYL 211 (369)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (369)
++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444333334444444444444444444333333444444444444444444333333444455555555
Q ss_pred cCCcCC
Q 040974 212 SSNKFS 217 (369)
Q Consensus 212 ~~~~~~ 217 (369)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1e-11 Score=100.21 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=37.0
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEc
Q 040974 132 SHLMFLYIDTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYL 211 (369)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (369)
++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444333334444444444444444444333333344444444444444444333333444445555555
Q ss_pred cCCcCC
Q 040974 212 SSNKFS 217 (369)
Q Consensus 212 ~~~~~~ 217 (369)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 554443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.1e-14 Score=128.46 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCCcEEEccCCcCCCCCcccc-cCCCCcceeeccccccccccCccc-----cCCCCCCEEEccCCCCccc----cchhhh
Q 040974 204 KSMSVLYLSSNKFSGPIPLSF-GNLSNLNSLHLYGNSVSGSIPSSL-----GKLKSLFNLQLKGNQLTGY----IPSSFR 273 (369)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~----~~~~~~ 273 (369)
++|++|++++|.+.......+ ..+++|++|++++|.++......+ ...++|++|++++|.++.. ....+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666665542211111 223456666666666543322222 2345677777777766532 223335
Q ss_pred cCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcccccCCccCc
Q 040974 274 NLTGLLSLLLSQNKLFGS----IPDEIGKMRSLSILDLSQNQFKGV----LPPSVSNLTNLKELVLLYNNLSGSIPPLLE 345 (369)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 345 (369)
..++|++|++++|.+.+. ++..+..+++|+.|++++|.+++. +...+..+++|++|+|++|.+.+.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 566677777777766532 133445566777777777777643 223344567777777777777654333222
Q ss_pred C---CC---CCEEE--ccCCeec
Q 040974 346 N---PM---LTQLS--LDNNHFT 360 (369)
Q Consensus 346 ~---~~---L~~L~--l~~n~~~ 360 (369)
. .. |+.+. +.++.+.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 1 12 55555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.9e-13 Score=124.12 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=117.7
Q ss_pred CCCCcEEEccCCcCCCCCcccc----c-CCCCcceeeccccccccccCccc-cCCCCCCEEEccCCCCccccchhh----
Q 040974 203 SKSMSVLYLSSNKFSGPIPLSF----G-NLSNLNSLHLYGNSVSGSIPSSL-GKLKSLFNLQLKGNQLTGYIPSSF---- 272 (369)
Q Consensus 203 l~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 272 (369)
.+.|++|++++|.+.......+ . ..+.|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4568899999998764333332 2 23699999999999864433222 345689999999999975544443
Q ss_pred -hcCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcccccCCcc
Q 040974 273 -RNLTGLLSLLLSQNKLFGS----IPDEIGKMRSLSILDLSQNQFKGV----LPPSVSNLTNLKELVLLYNNLSGSIPPL 343 (369)
Q Consensus 273 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 343 (369)
...++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+. +...+..+++|+.|+|++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2468899999999998643 333456789999999999999753 2456677889999999999998643322
Q ss_pred ----Cc-CCCCCEEEccCCeeccc
Q 040974 344 ----LE-NPMLTQLSLDNNHFTGY 362 (369)
Q Consensus 344 ----~~-~~~L~~L~l~~n~~~~~ 362 (369)
+. .++|++|+|++|+++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 22 28899999999998743
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.3e-09 Score=97.65 Aligned_cols=262 Identities=9% Similarity=-0.005 Sum_probs=147.2
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 040974 60 RVDNITLPAKGLKGKLHDFSFSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYI 139 (369)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 139 (369)
+++.+.++.. ...+...+|.+|.+|+.+.|..+ ++.+-..+|.++ +|+.+.+..+ +.......|.. .+|+.+.+
T Consensus 47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 5777777653 34677777999999999998754 555667778877 5777777654 33344445544 37888888
Q ss_pred cCCcCCCCCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccCccc---------------------------
Q 040974 140 DTNHLDGSIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSF--------------------------- 192 (369)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--------------------------- 192 (369)
..+- +......|.++ +|+.+.+..+ +.......+.++..++.+.+.....
T Consensus 121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 6542 21222333333 4555555432 2223334445555555554432211
Q ss_pred --------cccCCcCCcCCCCCcEEEccCCcCCCCCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCC
Q 040974 193 --------SGFIPPDIGNSKSMSVLYLSSNKFSGPIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQL 264 (369)
Q Consensus 193 --------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (369)
.......+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred ccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 0111223334445555555433 22122344556666666666554 34344455666667777766543 3
Q ss_pred ccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 040974 265 TGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYN 334 (369)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n 334 (369)
.......|.++.+|+.+.+.++.+.......|..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 3344556666777777777666665455556667777777777543 44344556667777777766543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=2.6e-10 Score=102.66 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=83.9
Q ss_pred EcCCC-CCccccCCcccCCCCCCCEEeCCC-CcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCC
Q 040974 65 TLPAK-GLKGKLHDFSFSLFPHLAYLDLSY-NKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTN 142 (369)
Q Consensus 65 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 142 (369)
+++++ .+. .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 33444 454 4665 78889999999996 9999777788999999999999999999888889999999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEeeccccC
Q 040974 143 HLDGSIPPELGQLSSIVELSLFSNHLN 169 (369)
Q Consensus 143 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 169 (369)
.+++..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99865555555555 999999999875
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3.7e-10 Score=101.68 Aligned_cols=104 Identities=27% Similarity=0.282 Sum_probs=83.2
Q ss_pred ceeecccc-ccccccCccccCCCCCCEEEccC-CCCccccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 040974 231 NSLHLYGN-SVSGSIPSSLGKLKSLFNLQLKG-NQLTGYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLS 308 (369)
Q Consensus 231 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (369)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 776 4666 88888899999986 88887777788888899999999998887777788888999999999
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCccc
Q 040974 309 QNQFKGVLPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 309 ~~~i~~~~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+|.+.+..+..+..++ |+.|+|.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9988865555555555 888998888876
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=2.7e-08 Score=90.59 Aligned_cols=266 Identities=10% Similarity=0.013 Sum_probs=175.9
Q ss_pred cCCCCCCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCc
Q 040974 80 FSLFPHLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYIDTNHLDGSIPPELGQLSSIV 159 (369)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 159 (369)
+....+|+.+.+.. .++.+-..+|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++......|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 55667899999975 455567889999999999999865 665666778777 6888887644 44333445554 4899
Q ss_pred EEEeeccccCCCCCccCCCCCCCCEEEccCccccccCCcCCcCCCCCcEEEccCCcCCC---------------------
Q 040974 160 ELSLFSNHLNGSVPPSLSNLTDLFILFLQDNSFSGFIPPDIGNSKSMSVLYLSSNKFSG--------------------- 218 (369)
Q Consensus 160 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------- 218 (369)
.+.+..+- .......+.++ +++.+.+..+ ++......+....+++.+.+.......
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 99998653 22344455555 5666665443 333444556666667666654332110
Q ss_pred --------------CCcccccCCCCcceeeccccccccccCccccCCCCCCEEEccCCCCccccchhhhcCCCCCEEEcc
Q 040974 219 --------------PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLS 284 (369)
Q Consensus 219 --------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (369)
.....+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++......|..+..|+.+.+.
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 01112334455666665443 33344556677888888888765 444556678888889999886
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCccCcC-CCCCEEEccCC
Q 040974 285 QNKLFGSIPDEIGKMRSLSILDLSQNQFKGVLPPSVSNLTNLKELVLLYNNLSGSIPPLLEN-PMLTQLSLDNN 357 (369)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~l~~n 357 (369)
.+ +.......|..+.+|+.+.+.++.+......+|..|.+|+.+.|..+ +.......|.. ++|+++.+..+
T Consensus 272 ~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 272 AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 54 44355567888999999999988888777788999999999999754 44333445544 78888777543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1.2e-09 Score=98.44 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=100.3
Q ss_pred CCCcEEEeeccccCC-CC-------CccCCCCCCCCEEEccCccccc---------cCCcCCcCCCCCcEEEccCCcCCC
Q 040974 156 SSIVELSLFSNHLNG-SV-------PPSLSNLTDLFILFLQDNSFSG---------FIPPDIGNSKSMSVLYLSSNKFSG 218 (369)
Q Consensus 156 ~~L~~L~l~~~~~~~-~~-------~~~l~~l~~L~~L~l~~~~~~~---------~~~~~l~~l~~L~~L~l~~~~~~~ 218 (369)
..++.|.+......+ .. ..+...+++|+.|.+.+..... .+...+..+|+|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777777544331 11 1223346788888775542210 12223345677777777666211
Q ss_pred CCcccccCCCCcceeeccccccccccCcccc--CCCCCCEEEccCC--CCccc-----cchhh--hcCCCCCEEEccCCc
Q 040974 219 PIPLSFGNLSNLNSLHLYGNSVSGSIPSSLG--KLKSLFNLQLKGN--QLTGY-----IPSSF--RNLTGLLSLLLSQNK 287 (369)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~ 287 (369)
..+. + .+++|++|++..+.+.......+. .+|+|++|+|+.+ ...+. ....+ ..+|+|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1221 2 256777777776665433322232 4677777776421 11000 01111 235677777777766
Q ss_pred CcccCCccc---cCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcccccCCccCcCCCCCEEEccCCe
Q 040974 288 LFGSIPDEI---GKMRSLSILDLSQNQFKGVL----PPSVSNLTNLKELVLLYNNLSGSIPPLLENPMLTQLSLDNNH 358 (369)
Q Consensus 288 ~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 358 (369)
+.+..+..+ ..+++|+.|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+...-..++++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 653221111 24567777777777665432 222234567777777777666433222221112346666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.6e-09 Score=97.51 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCCCEEEccCCCCccccchhhh---cCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcCcccCCccccC
Q 040974 250 KLKSLFNLQLKGNQLTGYIPSSFR---NLTGLLSLLLSQNKLFGSI----PDEIGKMRSLSILDLSQNQFKGVLPPSVSN 322 (369)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 322 (369)
.+++|+.|++.+|.+.+.....+. .+++|+.|+++.|.+.+.. +..+..+++|+.|++++|.+.+.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356777777777766533222222 3567777777777665421 222234577788888777776443332322
Q ss_pred -CCCCCEEEccCCc
Q 040974 323 -LTNLKELVLLYNN 335 (369)
Q Consensus 323 -~~~L~~L~l~~n~ 335 (369)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 2457777765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3.4e-08 Score=80.22 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=57.5
Q ss_pred cccCCCCcceeecccc-ccccc----cCccccCCCCCCEEEccCCCCcccc----chhhhcCCCCCEEEccCCcCccc--
Q 040974 223 SFGNLSNLNSLHLYGN-SVSGS----IPSSLGKLKSLFNLQLKGNQLTGYI----PSSFRNLTGLLSLLLSQNKLFGS-- 291 (369)
Q Consensus 223 ~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~-- 291 (369)
.+...+.|++|++++| .+... +...+...++|++|++++|.+.... ...+...+.|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 55422 2223344566666666666665321 22333445566666666655432
Q ss_pred --CCccccCCCCCCEEEc--cCCcCccc----CCccccCCCCCCEEEccCCccc
Q 040974 292 --IPDEIGKMRSLSILDL--SQNQFKGV----LPPSVSNLTNLKELVLLYNNLS 337 (369)
Q Consensus 292 --~~~~~~~~~~L~~L~l--~~~~i~~~----~~~~l~~~~~L~~L~l~~n~~~ 337 (369)
+...+...++|++|++ ++|.+.+. +...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2223344455555555 55555432 1223334455555555555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=5.3e-08 Score=79.09 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=62.8
Q ss_pred cccCCCCCCEEEccCC-CCccc----cchhhhcCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcCccc--
Q 040974 247 SLGKLKSLFNLQLKGN-QLTGY----IPSSFRNLTGLLSLLLSQNKLFGS----IPDEIGKMRSLSILDLSQNQFKGV-- 315 (369)
Q Consensus 247 ~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~-- 315 (369)
.+...+.|++|++++| .+... ....+...++|++|++++|.+.+. +...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566777777666 65532 223344456677777776666432 122333446667777777766543
Q ss_pred --CCccccCCCCCCEEEc--cCCcccccCCc----cCcC-CCCCEEEccCCeec
Q 040974 316 --LPPSVSNLTNLKELVL--LYNNLSGSIPP----LLEN-PMLTQLSLDNNHFT 360 (369)
Q Consensus 316 --~~~~l~~~~~L~~L~l--~~n~~~~~~~~----~~~~-~~L~~L~l~~n~~~ 360 (369)
+...+...+.|++|+| ++|.+.+.... .+.. ++|++|++++|++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555666777777 66666543221 2212 56777777766653
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=2e-07 Score=74.07 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=16.4
Q ss_pred CcceeeccccccccccCccccCCCCCCEEEccCC
Q 040974 229 NLNSLHLYGNSVSGSIPSSLGKLKSLFNLQLKGN 262 (369)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (369)
.|++|++++|.++......+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544433333444455555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=5.3e-07 Score=71.61 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=42.8
Q ss_pred CCCEEEccCCCCccccchhhhcCCCCCEEEccCCc-CcccCCccccCC----CCCCEEEccCCc-CcccCCccccCCCCC
Q 040974 253 SLFNLQLKGNQLTGYIPSSFRNLTGLLSLLLSQNK-LFGSIPDEIGKM----RSLSILDLSQNQ-FKGVLPPSVSNLTNL 326 (369)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-i~~~~~~~l~~~~~L 326 (369)
+|++|+++++.++......+.++++|+.|++++|. +++.....+..+ ++|+.|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665554444445555666666666553 333222223332 346666666653 544433444555666
Q ss_pred CEEEccCCc
Q 040974 327 KELVLLYNN 335 (369)
Q Consensus 327 ~~L~l~~n~ 335 (369)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=5.8e-07 Score=76.84 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=16.8
Q ss_pred CCCCCEEEccCCCCccc--cchhhhcCCCCCEEEccCCcCc
Q 040974 251 LKSLFNLQLKGNQLTGY--IPSSFRNLTGLLSLLLSQNKLF 289 (369)
Q Consensus 251 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 289 (369)
+++|+.|+|++|.+.+. .+..+..+++|+.|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34444555554444431 1233334444444444444443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=3.6e-06 Score=71.93 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=34.1
Q ss_pred eecCCCCHHHHHHHHHHHHhcccCCccc--------cCCCcCCCCCCCCCCCCccccceeeCCCC-CEEEEEcCC
Q 040974 3 ITVSSESNEEADALLKWKASLQNHNRSL--------LSSWVKDTTNVSSKTSPCAWYGISCNDAG-RVDNITLPA 68 (369)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~W~~~~~~~~~~~~~c~~~~~~~~~~~-~l~~l~l~~ 68 (369)
|+++-+..++..-|+++.......+..- ...|-|.+++ .+...|.|.|+.|...+ +|..+...+
T Consensus 27 v~I~~g~ky~k~~ll~~i~~~~~~~f~p~~~~~~~~~~~ffV~~~~--~A~~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 27 ITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDAS--TASALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp EEETTGGGSCHHHHHHHHHHTCSSCCCCEEEEEETTEEEEEESCHH--HHHHHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred EEecCccccCHHHHHHHHHHhCCCCcEeEEEEEeCCEEEEEeCChH--HHHHHHhcCcEEECCCCCEEEEEEecC
Confidence 4455566666777787777654222111 0123333331 22346889999997543 555544433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=8.8e-05 Score=59.98 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=38.5
Q ss_pred cCCCCcceeecccc-ccccc----cCccccCCCCCCEEEccCCCCcccc----chhhhcCCCCCEEEccCCcCccc----
Q 040974 225 GNLSNLNSLHLYGN-SVSGS----IPSSLGKLKSLFNLQLKGNQLTGYI----PSSFRNLTGLLSLLLSQNKLFGS---- 291 (369)
Q Consensus 225 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~---- 291 (369)
.+-+.|++|+++++ .+... +...+..-+.|+.|+|++|.+.+.. ...+..-+.|+.|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666553 43321 2223334455566666665554321 22233345555555555555421
Q ss_pred CCccccCCCCCCEEEccC
Q 040974 292 IPDEIGKMRSLSILDLSQ 309 (369)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~ 309 (369)
+...+.....|+.|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 122233344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00035 Score=56.47 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=35.1
Q ss_pred CCCCCEEEccCC-CCccc----cchhhhcCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcCccc----CC
Q 040974 251 LKSLFNLQLKGN-QLTGY----IPSSFRNLTGLLSLLLSQNKLFGSI----PDEIGKMRSLSILDLSQNQFKGV----LP 317 (369)
Q Consensus 251 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~----~~ 317 (369)
-+.|++|+|+++ .+... +...+..-..|+.|+|++|.+.+.. ...+..-..|+.|+|++|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 43321 1223333445555555555544221 11222334555555555555432 12
Q ss_pred ccccCCCCCCEEEccC
Q 040974 318 PSVSNLTNLKELVLLY 333 (369)
Q Consensus 318 ~~l~~~~~L~~L~l~~ 333 (369)
..+.....|++|+|++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2333444455555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.02 E-value=0.015 Score=43.52 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=38.6
Q ss_pred CEEEccCCCCc-cccchhhhcCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCc
Q 040974 255 FNLQLKGNQLT-GYIPSSFRNLTGLLSLLLSQNKLFGSIPDEIGKMRSLSILDLSQNQFK 313 (369)
Q Consensus 255 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 313 (369)
..++.+++.++ ..+|..+. ++|+.|+|++|.+....+..|..+++|+.|+|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777665 23343332 46888888888887666666777788888888887764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.02 E-value=0.018 Score=43.11 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=17.1
Q ss_pred CCCEEeCCCCcccccCCcCCCCCCCCCEEECCCCc
Q 040974 85 HLAYLDLSYNKLFGTIPPQISNLTNLIHLYFGGNQ 119 (369)
Q Consensus 85 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 119 (369)
+|+.|+|++|+|+...++.|..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35555555555544444444444555555554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.97 E-value=6.3 Score=27.45 Aligned_cols=41 Identities=10% Similarity=-0.109 Sum_probs=17.5
Q ss_pred cCCcCCCCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 040974 99 TIPPQISNLTNLIHLYFGGNQFSGNIPPEVGLMSHLMFLYID 140 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 140 (369)
+-..+|..|.+|+.+.|..+ ++.+-...|.+|.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33444444444444444442 222333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.35 E-value=7.7 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.069 Sum_probs=20.5
Q ss_pred CCCccccCCCCCcEEEeeccccCCCCCccCCCCCCCCEEEccC
Q 040974 147 SIPPELGQLSSIVELSLFSNHLNGSVPPSLSNLTDLFILFLQD 189 (369)
Q Consensus 147 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 189 (369)
+....|.+|.+|+.+.+..+ +..+....|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344555555555555542 2223444555555555555543
Done!