BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040977
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 27 GVLVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYG 86
G L +Y TCP A ++R IV+ A D R+ ASL+RLHFHDCF++GCDA +LL++ G
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 87 GMVTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSC 124
+++EK AGPN NS RGF V+D IK LE+ACP VSC
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSC 99
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 33 YYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEK 92
+Y TCP A I+R ++ A+ D R+ ASL+RLHFHDCF+ GCDA +LL+ G + +EK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 93 QAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
AGPNVNS RGF V+D IK LE+ACP VSC+
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCS 99
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 65/99 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L ++Y CP A ++ V +AV K+ RM ASLLRLHFHDCF+ GCDA VLL+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCALI 127
EK AGPN NS+RGFEVID IK +E CP VSCA I
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADI 100
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHFHDCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 63/97 (64%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+LRLHF DCF+ GCDA +LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 99
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 70/99 (70%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y+ETCP I+ ++ +A DPR+ ASL+RLHFHDCF+ GCD VLL + +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCALI 127
+E+ A PN+NS+RG +V+++IK +E++CP TVSCA I
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADI 100
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L D Y ++CP +I+R+ V A+ + RMAASL+RLHFHDCF+ GCDA +LL+ G
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---GA 58
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCALIF 128
+EK A PN+NS RGFEVID IK +E+ACP VSCA I
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADIL 98
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 62/97 (63%)
Query: 29 LVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGM 88
L +Y +CP I+R + N + DPR+AAS+L LHF DCF+ GCDA +LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 89 VTEKQAGPNVNSVRGFEVIDEIKFILEDACPHTVSCA 125
TEK A N NS RGF VID +K +E ACP TVSCA
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCA 98
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 61/96 (63%)
Query: 33 YYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEK 92
+Y +CP AE ++++ V A + +A L+R+HFHDCF+ GCDA VLL+S EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 93 QAGPNVNSVRGFEVIDEIKFILEDACPHTVSCALIF 128
A PN S+RGFEVI K +E ACP TVSCA I
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADIL 101
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 32 DYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTE 91
D+Y +TCP AE I+R V+ AV KD +AA LLRLHFHDCF+ GCDA VLL+ E
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGE 71
Query: 92 KQAGPNVN-SVRGFEVIDEIKFILEDACPHT-VSCALI 127
+QA PN+ F+ +++I+ LE C VSC+ I
Sbjct: 72 QQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDI 109
>pdb|3ACS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
pdb|3ACS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
Length = 842
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 39 PLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEKQAGPNV 98
PL E + R + P + R F+DC + C + ES+ TE QAG
Sbjct: 479 PLFEHLTRSFQFTVQNRGPHGLPLIGRADFNDCLNLNCFSTTPGESF--QTTENQAGGVA 536
Query: 99 NSV 101
SV
Sbjct: 537 ESV 539
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4- Piperidino-Piperidine
Length = 534
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 2 ENVRILLLIVLMFMLHGRKISGEGDGVLVQDYYKETCPLAEEI 44
++V ILLL L L R IS G +L + K T LAE+I
Sbjct: 203 QSVSILLLSPLTKNLFHRAISESGVALLSSLFRKNTKSLAEKI 245
>pdb|2DWU|A Chain A, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|B Chain B, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|C Chain C, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
Length = 276
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 34 YKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHD--CFLMGCDALVLLESYGGMVTE 91
+ CP ++ +E+ ++ +LL L D ++GC LLESY +
Sbjct: 144 HSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESY----IK 199
Query: 92 KQAGPNVNSVRGFE 105
K+ G +V + E
Sbjct: 200 KELGEDVTIISSAE 213
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 48 IVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEKQAGPNVNSVRGF 104
I N P+ L+ L ++G D ++++++ +V EKQA N ++ F
Sbjct: 112 IAANEPCPQPQTKEHLMALE-----ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,623,035
Number of Sequences: 62578
Number of extensions: 128162
Number of successful extensions: 417
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 24
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)