Query 040977
Match_columns 128
No_of_seqs 109 out of 1087
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3.4E-48 7.4E-53 323.0 7.1 101 24-128 20-120 (324)
2 cd00693 secretory_peroxidase H 100.0 1.8E-42 3.9E-47 285.4 5.8 100 28-128 1-100 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1E-29 2.3E-34 202.3 2.3 78 45-128 1-80 (230)
4 cd00691 ascorbate_peroxidase A 99.9 4.5E-23 9.7E-28 167.0 2.7 80 40-128 11-94 (253)
5 PLN02608 L-ascorbate peroxidas 99.8 2.5E-22 5.5E-27 165.7 3.1 75 40-128 13-95 (289)
6 PLN02364 L-ascorbate peroxidas 99.8 1.2E-21 2.6E-26 158.7 3.6 85 31-128 3-97 (250)
7 cd00314 plant_peroxidase_like 99.8 1.7E-21 3.7E-26 155.6 1.8 77 44-128 2-86 (255)
8 cd00692 ligninase Ligninase an 99.8 1.1E-19 2.3E-24 152.3 3.1 78 41-128 16-108 (328)
9 cd08201 plant_peroxidase_like_ 99.6 2.1E-18 4.5E-23 141.1 -5.4 63 52-128 34-104 (264)
10 PLN02879 L-ascorbate peroxidas 99.4 1.1E-13 2.4E-18 112.5 3.6 71 45-128 20-98 (251)
11 TIGR00198 cat_per_HPI catalase 96.3 0.0035 7.5E-08 58.0 3.6 90 28-128 38-146 (716)
12 cd00649 catalase_peroxidase_1 90.5 0.32 6.9E-06 42.7 3.8 90 28-128 28-136 (409)
13 PF07172 GRP: Glycine rich pro 81.1 1.1 2.4E-05 31.7 1.8 13 1-13 1-13 (95)
14 cd08200 catalase_peroxidase_2 68.4 4.8 0.0001 34.1 2.8 75 47-128 17-104 (297)
15 PRK15061 catalase/hydroperoxid 61.7 7.4 0.00016 36.6 2.9 90 28-128 40-148 (726)
16 PF08782 c-SKI_SMAD_bind: c-SK 44.2 9 0.00019 27.4 0.4 16 67-83 4-19 (96)
17 PF01816 LRV: Leucine rich rep 42.1 21 0.00045 19.6 1.6 23 48-70 2-24 (26)
18 KOG0427 Ubiquitin conjugating 39.4 32 0.00069 26.4 2.7 28 26-70 131-158 (161)
19 PF04202 Mfp-3: Foot protein 3 33.8 42 0.00091 22.8 2.3 22 1-22 1-22 (71)
20 TIGR00198 cat_per_HPI catalase 33.5 29 0.00062 32.8 2.0 71 49-128 437-517 (716)
21 PF06764 DUF1223: Protein of u 30.8 38 0.00082 26.9 2.1 25 36-69 11-35 (202)
22 PF05782 ECM1: Extracellular m 27.9 67 0.0015 29.3 3.3 22 1-22 1-22 (544)
23 PF12276 DUF3617: Protein of u 27.4 65 0.0014 23.5 2.7 14 24-37 22-35 (162)
24 PF10731 Anophelin: Thrombin i 27.2 1E+02 0.0022 20.6 3.2 17 4-20 3-19 (65)
25 PHA03163 hypothetical protein; 27.1 86 0.0019 22.3 3.1 34 6-39 10-46 (92)
26 TIGR00412 redox_disulf_2 small 25.9 59 0.0013 20.9 2.0 14 31-44 3-16 (76)
27 COG3763 Uncharacterized protei 23.8 50 0.0011 22.5 1.4 25 44-68 24-48 (71)
28 KOG3803 Transcription factor c 22.4 51 0.0011 31.4 1.6 35 37-84 671-705 (968)
29 COG3262 HycE Ni,Fe-hydrogenase 21.9 64 0.0014 25.3 1.8 31 45-75 113-143 (165)
30 PRK15061 catalase/hydroperoxid 21.5 67 0.0015 30.5 2.1 76 47-128 442-529 (726)
31 PF01530 zf-C2HC: Zinc finger, 21.2 41 0.00088 19.4 0.5 15 70-84 3-17 (31)
32 COG5342 Invasion protein B, in 20.8 35 0.00076 27.0 0.2 22 63-84 116-137 (181)
33 PF03076 GP3: Equine arteritis 20.2 26 0.00056 26.6 -0.6 22 58-79 6-27 (160)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.4e-48 Score=323.04 Aligned_cols=101 Identities=47% Similarity=0.823 Sum_probs=96.2
Q ss_pred CCCCCCCcCcccCCCccHHHHHHHHHHHHHHhccccccchhheeeccccccccCchhhhhcCCCCcccccCCCCCCccch
Q 040977 24 EGDGVLVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEKQAGPNVNSVRG 103 (128)
Q Consensus 24 ~~~~~L~~~fY~~sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHDCFV~GCDaSiLLd~~~~~~~ek~a~~n~~~lrg 103 (128)
.+.++|+++||++|||++|+||+++|++++++||+++|++||||||||||+||||||||+++ .+||++.+|. ++||
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~G 95 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRG 95 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-Ccch
Confidence 45577999999999999999999999999999999999999999999999999999999964 3699999998 8999
Q ss_pred HHHHHHHHHHHhhhCCCcccccccC
Q 040977 104 FEVIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 104 f~~Id~iKa~lE~~CPg~VSCADIl 128 (128)
||+||+||++||++|||+|||||||
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADil 120 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADIL 120 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHH
Confidence 9999999999999999999999996
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.8e-42 Score=285.38 Aligned_cols=100 Identities=58% Similarity=0.984 Sum_probs=97.0
Q ss_pred CCCcCcccCCCccHHHHHHHHHHHHHHhccccccchhheeeccccccccCchhhhhcCCCCcccccCCCCCCccchHHHH
Q 040977 28 VLVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGGMVTEKQAGPNVNSVRGFEVI 107 (128)
Q Consensus 28 ~L~~~fY~~sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHDCFV~GCDaSiLLd~~~~~~~ek~a~~n~~~lrgf~~I 107 (128)
||+++||++|||++|+||++.|++.+++|++++|++|||+||||||+||||||||+++++..+|+++++|. ++|||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 69999999999999999999999999999999999999999999999999999999987778999999998 79999999
Q ss_pred HHHHHHHhhhCCCcccccccC
Q 040977 108 DEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 108 d~iKa~lE~~CPg~VSCADIl 128 (128)
|+||++||+.||++|||||||
T Consensus 80 ~~iK~~~e~~cp~~VScADii 100 (298)
T cd00693 80 DDIKAALEAACPGVVSCADIL 100 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHH
Confidence 999999999999999999996
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=99.95 E-value=1e-29 Score=202.35 Aligned_cols=78 Identities=56% Similarity=0.919 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccccccchhheeeccccc-cccCchhhhhcCCCCcccccCCCCCCccc-hHHHHHHHHHHHhhhCCCcc
Q 040977 45 MRRIVENAVVKDPRMAASLLRLHFHDCFL-MGCDALVLLESYGGMVTEKQAGPNVNSVR-GFEVIDEIKFILEDACPHTV 122 (128)
Q Consensus 45 V~~~v~~~~~~d~~~aa~lLRL~FHDCFV-~GCDaSiLLd~~~~~~~ek~a~~n~~~lr-gf~~Id~iKa~lE~~CPg~V 122 (128)
||+.|++++..+++++|++|||+|||||+ +|||||||+ ...|+++++|. +|+ ||++|+.||+++|+.|||+|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~-----~~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILL-----FSAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGG-----STTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceec-----ccccccccccc-CcceeeechhhHHhhhcccccCCC
Confidence 78999999999999999999999999999 999999999 35799999998 788 99999999999999999999
Q ss_pred cccccC
Q 040977 123 SCALIF 128 (128)
Q Consensus 123 SCADIl 128 (128)
||||||
T Consensus 75 S~ADii 80 (230)
T PF00141_consen 75 SCADII 80 (230)
T ss_dssp -HHHHH
T ss_pred CHHHHH
Confidence 999985
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=99.87 E-value=4.5e-23 Score=166.97 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHHhccccccchhheeeccccccccCchhhhhcCCC---CcccccCCCCCCcc-chHHHHHHHHHHHh
Q 040977 40 LAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLESYGG---MVTEKQAGPNVNSV-RGFEVIDEIKFILE 115 (128)
Q Consensus 40 ~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHDCFV~GCDaSiLLd~~~~---~~~ek~a~~n~~~l-rgf~~Id~iKa~lE 115 (128)
..++||++.|++.++ ||+++|++|||+||||| +||+|+++++.++ ..+|+++++|. +| +||++||.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHc-
Confidence 578899999999999 99999999999999999 5999998875433 24699999998 78 9999999999986
Q ss_pred hhCCCcccccccC
Q 040977 116 DACPHTVSCALIF 128 (128)
Q Consensus 116 ~~CPg~VSCADIl 128 (128)
| +|||||||
T Consensus 86 ---~-~VScADil 94 (253)
T cd00691 86 ---P-DISYADLW 94 (253)
T ss_pred ---C-CCCHHHHH
Confidence 4 89999996
No 5
>PLN02608 L-ascorbate peroxidase
Probab=99.85 E-value=2.5e-22 Score=165.72 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHHhccccccchhheeecccc-------ccccCchhhhhcCCCCcccccCCCCCCcc-chHHHHHHHH
Q 040977 40 LAEEIMRRIVENAVVKDPRMAASLLRLHFHDCF-------LMGCDALVLLESYGGMVTEKQAGPNVNSV-RGFEVIDEIK 111 (128)
Q Consensus 40 ~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHDCF-------V~GCDaSiLLd~~~~~~~ek~a~~n~~~l-rgf~~Id~iK 111 (128)
++|.+.+++ ..+.+||+.+|.+|||+||||| ++||||||+++ +|+++++|. +| +||++||.||
T Consensus 13 ~~~~~~~~~--~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK 83 (289)
T PLN02608 13 EIEKARRDL--RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVK 83 (289)
T ss_pred HHHHHHHHH--HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHH
Confidence 367766666 4477899999999999999999 99999999983 599999998 79 6999999999
Q ss_pred HHHhhhCCCcccccccC
Q 040977 112 FILEDACPHTVSCALIF 128 (128)
Q Consensus 112 a~lE~~CPg~VSCADIl 128 (128)
+++ ++|||||||
T Consensus 84 ~~~-----~~VScADil 95 (289)
T PLN02608 84 AKH-----PKITYADLY 95 (289)
T ss_pred HHc-----CCcCHHHHH
Confidence 987 589999996
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=99.83 E-value=1.2e-21 Score=158.68 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=74.2
Q ss_pred cCcccC--CCccHHHHHHHHHHHHHHhccccccchhheeec-----ccccc--ccCchhhhhcCCCCcccccCCCCCCcc
Q 040977 31 QDYYKE--TCPLAEEIMRRIVENAVVKDPRMAASLLRLHFH-----DCFLM--GCDALVLLESYGGMVTEKQAGPNVNSV 101 (128)
Q Consensus 31 ~~fY~~--sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FH-----DCFV~--GCDaSiLLd~~~~~~~ek~a~~n~~~l 101 (128)
.+||.. -||.+++.+++.+++.+ .||+++|++|||+|| |||++ ||||||. ..+|+++++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~------~~~E~~~~~N~-gl 74 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMR------FDAEQAHGANS-GI 74 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccc------ccccccCCCcc-CH
Confidence 356654 48889998999998877 889999999999999 99999 9999982 34699999998 67
Q ss_pred -chHHHHHHHHHHHhhhCCCcccccccC
Q 040977 102 -RGFEVIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 102 -rgf~~Id~iKa~lE~~CPg~VSCADIl 128 (128)
+||++||.||+++ ++|||||||
T Consensus 75 ~~~~~~i~~ik~~~-----~~VScADil 97 (250)
T PLN02364 75 HIALRLLDPIREQF-----PTISFADFH 97 (250)
T ss_pred HHHHHHHHHHHHHc-----CCcCHHHHH
Confidence 8999999999998 699999996
No 7
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.82 E-value=1.7e-21 Score=155.57 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhccccccchhheeecccccc--------ccCchhhhhcCCCCcccccCCCCCCccchHHHHHHHHHHHh
Q 040977 44 IMRRIVENAVVKDPRMAASLLRLHFHDCFLM--------GCDALVLLESYGGMVTEKQAGPNVNSVRGFEVIDEIKFILE 115 (128)
Q Consensus 44 iV~~~v~~~~~~d~~~aa~lLRL~FHDCFV~--------GCDaSiLLd~~~~~~~ek~a~~n~~~lrgf~~Id~iKa~lE 115 (128)
.|++.|++.+.+++..++++|||+|||||+. ||||||++++ |++.++|.+..++|++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 4788889999999999999999999999998 9999999974 9999999832499999999999999
Q ss_pred hhCCCcccccccC
Q 040977 116 DACPHTVSCALIF 128 (128)
Q Consensus 116 ~~CPg~VSCADIl 128 (128)
. |++||||||+
T Consensus 76 ~--~~~vS~ADli 86 (255)
T cd00314 76 G--GNPVSRADLI 86 (255)
T ss_pred C--CCcccHHHHH
Confidence 8 9999999985
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=99.77 E-value=1.1e-19 Score=152.32 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHh---ccccccchhheeeccccc------------cccCchhhhhcCCCCcccccCCCCCCccchHH
Q 040977 41 AEEIMRRIVENAVVK---DPRMAASLLRLHFHDCFL------------MGCDALVLLESYGGMVTEKQAGPNVNSVRGFE 105 (128)
Q Consensus 41 ~E~iV~~~v~~~~~~---d~~~aa~lLRL~FHDCFV------------~GCDaSiLLd~~~~~~~ek~a~~n~~~lrgf~ 105 (128)
++.-|++.+++.+.. ....++.+|||+|||||+ +||||||||+++ .|+++++|. +|+ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 788899999999874 445788899999999997 799999999843 699999998 788 9
Q ss_pred HHHHHHHHHhhhCCCcccccccC
Q 040977 106 VIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 106 ~Id~iKa~lE~~CPg~VSCADIl 128 (128)
+|+.+|..+|+.| |||||||
T Consensus 89 vvd~lk~~~e~~c---VScADii 108 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFI 108 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHH
Confidence 9999999999999 9999986
No 9
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.65 E-value=2.1e-18 Score=141.10 Aligned_cols=63 Identities=29% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHhccccccchhheeecccc-------ccccCchhhhhcCCCCccccc-CCCCCCccchHHHHHHHHHHHhhhCCCccc
Q 040977 52 AVVKDPRMAASLLRLHFHDCF-------LMGCDALVLLESYGGMVTEKQ-AGPNVNSVRGFEVIDEIKFILEDACPHTVS 123 (128)
Q Consensus 52 ~~~~d~~~aa~lLRL~FHDCF-------V~GCDaSiLLd~~~~~~~ek~-a~~n~~~lrgf~~Id~iKa~lE~~CPg~VS 123 (128)
....++++++++|||+||||| ++||||||+++. +.+|+. ..+|. ++++|+.|+.+ +||
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~---~~~En~G~~~n~-~l~~~~~i~~~----------~VS 99 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYEL---DRPENIGSGFNT-TLNFFVNFYSP----------RSS 99 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecC---CChhhccCchhh-ccccceeeccC----------ccC
Confidence 335799999999999999999 999999999984 356887 44554 79999998765 599
Q ss_pred ccccC
Q 040977 124 CALIF 128 (128)
Q Consensus 124 CADIl 128 (128)
||||+
T Consensus 100 cADii 104 (264)
T cd08201 100 MADLI 104 (264)
T ss_pred HHHHH
Confidence 99985
No 10
>PLN02879 L-ascorbate peroxidase
Probab=99.41 E-value=1.1e-13 Score=112.53 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhccccccchhheeeccc-------cccccCchhhhhcCCCCcccccCCCCCCccc-hHHHHHHHHHHHhh
Q 040977 45 MRRIVENAVVKDPRMAASLLRLHFHDC-------FLMGCDALVLLESYGGMVTEKQAGPNVNSVR-GFEVIDEIKFILED 116 (128)
Q Consensus 45 V~~~v~~~~~~d~~~aa~lLRL~FHDC-------FV~GCDaSiLLd~~~~~~~ek~a~~n~~~lr-gf~~Id~iKa~lE~ 116 (128)
++..+.+.+ .+...+|.+|||-|||| --.||||||... .|++.++|. +|+ +|++||.||+++
T Consensus 20 ~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~-gL~~~~~~i~~iK~~~-- 89 (251)
T PLN02879 20 CKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANN-GLDIAVRLLDPIKELF-- 89 (251)
T ss_pred HHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcC-ChHHHHHHHHHHHHHc--
Confidence 345555554 56789999999999999 346999998752 489999998 788 999999999998
Q ss_pred hCCCcccccccC
Q 040977 117 ACPHTVSCALIF 128 (128)
Q Consensus 117 ~CPg~VSCADIl 128 (128)
++|||||||
T Consensus 90 ---~~VScADil 98 (251)
T PLN02879 90 ---PILSYADFY 98 (251)
T ss_pred ---CCcCHHHHH
Confidence 689999985
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=96.33 E-value=0.0035 Score=57.99 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCcCc-ccCCCccHH-HHHHHHHHHHHHhc--------cccccchhheeeccccc-c------cc-CchhhhhcCCCCc
Q 040977 28 VLVQDY-YKETCPLAE-EIMRRIVENAVVKD--------PRMAASLLRLHFHDCFL-M------GC-DALVLLESYGGMV 89 (128)
Q Consensus 28 ~L~~~f-Y~~sCP~~E-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCFV-~------GC-DaSiLLd~~~~~~ 89 (128)
.+..+| |++-+-+.. +-|++-+++.+... ..-+|-++||-+|+.=- + |+ .|+|=+ .
T Consensus 38 p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~ 111 (716)
T TIGR00198 38 PMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------A 111 (716)
T ss_pred CCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------c
Confidence 455666 766554321 13666666666653 35789999999998631 1 33 233322 1
Q ss_pred ccccCCCCCCcc-chHHHHHHHHHHHhhhCCCcccccccC
Q 040977 90 TEKQAGPNVNSV-RGFEVIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 90 ~ek~a~~n~~~l-rgf~~Id~iKa~lE~~CPg~VSCADIl 128 (128)
+|++-+.|. .| +...++..|| +.||++||||||+
T Consensus 112 P~~sw~~N~-~Ldka~~lL~pIk----~kyp~~VS~ADLi 146 (716)
T TIGR00198 112 PLNSWPDNV-NLDKARRLLWPIK----KKYGNKLSWADLI 146 (716)
T ss_pred cccCchhhh-hHHHHHHHHHHHH----HHCCCceeHHHHH
Confidence 345555565 23 3444455444 4799999999985
No 12
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=90.50 E-value=0.32 Score=42.67 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCcCc-ccCCCccHH-HHHHHHHHHHHHhc--------cccccchhheeeccccc-------cccC-chhhhhcCCCCc
Q 040977 28 VLVQDY-YKETCPLAE-EIMRRIVENAVVKD--------PRMAASLLRLHFHDCFL-------MGCD-ALVLLESYGGMV 89 (128)
Q Consensus 28 ~L~~~f-Y~~sCP~~E-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCFV-------~GCD-aSiLLd~~~~~~ 89 (128)
.+..+| |++..-++. +-|++-+++.+... ..-+|-++||-+||.-- .|+. |+|-+.
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------ 101 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------ 101 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------
Confidence 466666 666554433 45677777777654 36889999999998742 1443 444332
Q ss_pred ccccCCCCCCcc-chHHHHHHHHHHHhhhCCCcccccccC
Q 040977 90 TEKQAGPNVNSV-RGFEVIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 90 ~ek~a~~n~~~l-rgf~~Id~iKa~lE~~CPg~VSCADIl 128 (128)
+|++-+.|. +| +..++++.||++. |..||.||++
T Consensus 102 pe~~~~~N~-gL~~a~~~L~pik~k~----~~~iS~ADL~ 136 (409)
T cd00649 102 PLNSWPDNV-NLDKARRLLWPIKQKY----GNKISWADLM 136 (409)
T ss_pred cccCcHhhh-hHHHHHHHHHHHHHHc----CCCccHHHHH
Confidence 366667776 45 4667777777754 4579999963
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.06 E-value=1.1 Score=31.66 Aligned_cols=13 Identities=38% Similarity=0.513 Sum_probs=8.4
Q ss_pred CchHHHHHHHHHH
Q 040977 1 MENVRILLLIVLM 13 (128)
Q Consensus 1 m~~~~~~~~~~~~ 13 (128)
|+|++++|+.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8887766664443
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=68.42 E-value=4.8 Score=34.07 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHHhccccccchhheeeccccc-------cccCch-hhhhcCCCCcccccCCCCCCc--c-chHHHHHHHHHHHh
Q 040977 47 RIVENAVVKDPRMAASLLRLHFHDCFL-------MGCDAL-VLLESYGGMVTEKQAGPNVNS--V-RGFEVIDEIKFILE 115 (128)
Q Consensus 47 ~~v~~~~~~d~~~aa~lLRL~FHDCFV-------~GCDaS-iLLd~~~~~~~ek~a~~n~~~--l-rgf~~Id~iKa~lE 115 (128)
+.+++.+.......+-++|+-+|+.-- .|+.|+ |=+ .+|++-..|. + | +...+++.||++--
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~-~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNE-PEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccC-cHHHHHHHHHHHHHHHHhc
Confidence 456777777778899999999998742 144444 222 2366667776 3 4 56778888887752
Q ss_pred -hhCCC-cccccccC
Q 040977 116 -DACPH-TVSCALIF 128 (128)
Q Consensus 116 -~~CPg-~VSCADIl 128 (128)
..-+| .||-||.+
T Consensus 90 ~~~~~~~~vS~ADLi 104 (297)
T cd08200 90 ESQSGGKKVSLADLI 104 (297)
T ss_pred ccccCCccccHHHHH
Confidence 22222 68999863
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=61.71 E-value=7.4 Score=36.62 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCcCc-ccCCCccHH-HHHHHHHHHHHHhc--------cccccchhheeeccccc-------cccC-chhhhhcCCCCc
Q 040977 28 VLVQDY-YKETCPLAE-EIMRRIVENAVVKD--------PRMAASLLRLHFHDCFL-------MGCD-ALVLLESYGGMV 89 (128)
Q Consensus 28 ~L~~~f-Y~~sCP~~E-~iV~~~v~~~~~~d--------~~~aa~lLRL~FHDCFV-------~GCD-aSiLLd~~~~~~ 89 (128)
.+..+| |++-+-... +-|++-++..+... ..-+|-++||-+|+.=- .|+. |+|-+ .
T Consensus 40 p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~ 113 (726)
T PRK15061 40 PMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------A 113 (726)
T ss_pred CCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------c
Confidence 455666 766554321 23666666666543 35789999999998732 1443 33322 2
Q ss_pred ccccCCCCCCcc-chHHHHHHHHHHHhhhCCCcccccccC
Q 040977 90 TEKQAGPNVNSV-RGFEVIDEIKFILEDACPHTVSCALIF 128 (128)
Q Consensus 90 ~ek~a~~n~~~l-rgf~~Id~iKa~lE~~CPg~VSCADIl 128 (128)
+|++-+.|. +| +..+++..||++- |..||-||.+
T Consensus 114 pe~~w~~N~-gL~ka~~~L~pik~ky----~~~iS~ADLi 148 (726)
T PRK15061 114 PLNSWPDNV-NLDKARRLLWPIKQKY----GNKISWADLM 148 (726)
T ss_pred ccccchhhh-hHHHHHHHHHHHHHHh----CCCccHHHHH
Confidence 355666676 45 5677777777765 4568999853
No 16
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=44.19 E-value=9 Score=27.42 Aligned_cols=16 Identities=38% Similarity=0.982 Sum_probs=10.9
Q ss_pred eeccccccccCchhhhh
Q 040977 67 HFHDCFLMGCDALVLLE 83 (128)
Q Consensus 67 ~FHDCFV~GCDaSiLLd 83 (128)
.+|+|| .||.|+.+..
T Consensus 4 V~HeC~-g~c~G~f~P~ 19 (96)
T PF08782_consen 4 VYHECF-GGCRGSFIPE 19 (96)
T ss_dssp EEE-ST-T-EEEEE-GG
T ss_pred eEEeec-CccceEechh
Confidence 479999 8999998765
No 17
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=42.08 E-value=21 Score=19.62 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=15.8
Q ss_pred HHHHHHHhccccccchhheeecc
Q 040977 48 IVENAVVKDPRMAASLLRLHFHD 70 (128)
Q Consensus 48 ~v~~~~~~d~~~aa~lLRL~FHD 70 (128)
.|+..+.++|.+++.+|+-.-||
T Consensus 2 ~VR~avA~~P~~P~~~L~~La~D 24 (26)
T PF01816_consen 2 EVRAAVARRPNLPPEVLEQLAHD 24 (26)
T ss_dssp HHHHHHHHH--S-GGGGGGGTT-
T ss_pred HHHHHHHHccCCCHHHHHHhccC
Confidence 47888899999999999877766
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=32 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCCCcCcccCCCccHHHHHHHHHHHHHHhccccccchhheeecc
Q 040977 26 DGVLVQDYYKETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHD 70 (128)
Q Consensus 26 ~~~L~~~fY~~sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHD 70 (128)
+..-..++|-++|-+- ..|.=.|-||||
T Consensus 131 qrP~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHD 158 (161)
T KOG0427|consen 131 QRPTDNDRYVKNCKNG-----------------RSPKETRWWFHD 158 (161)
T ss_pred cCCCccchhhhhccCC-----------------CCcccceeeecc
Confidence 3446778999999642 235667999998
No 19
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=33.75 E-value=42 Score=22.75 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHHHHhhhcC
Q 040977 1 MENVRILLLIVLMFMLHGRKIS 22 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (128)
|.|.++..++.++|+-+.++.+
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred CCchhHHHHHHHHHHhhheeee
Confidence 7888876666666653334433
No 20
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=33.53 E-value=29 Score=32.80 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHhccccccchhheeeccccc-c------ccCch-hhhhcCCCCcccccCCCCCC-cc-chHHHHHHHHHHHhhhC
Q 040977 49 VENAVVKDPRMAASLLRLHFHDCFL-M------GCDAL-VLLESYGGMVTEKQAGPNVN-SV-RGFEVIDEIKFILEDAC 118 (128)
Q Consensus 49 v~~~~~~d~~~aa~lLRL~FHDCFV-~------GCDaS-iLLd~~~~~~~ek~a~~n~~-~l-rgf~~Id~iKa~lE~~C 118 (128)
+++.+.......+-|+|+-+|+.-- + |+.|+ |=+ .+|++-..|.. +| +..++.+.||++--.
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~-- 508 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRLAKVLAVLEKIQAEFAK-- 508 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHHHHHHHHHHHHHHHcCC--
Confidence 4444556777889999999998741 1 33333 222 23777777731 23 466677777776531
Q ss_pred CCcccccccC
Q 040977 119 PHTVSCALIF 128 (128)
Q Consensus 119 Pg~VSCADIl 128 (128)
+.||=||++
T Consensus 509 -~~vS~ADLi 517 (716)
T TIGR00198 509 -GPVSLADLI 517 (716)
T ss_pred -CcccHHHHH
Confidence 268888853
No 21
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=30.81 E-value=38 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.720 Sum_probs=19.6
Q ss_pred CCCccHHHHHHHHHHHHHHhccccccchhheeec
Q 040977 36 ETCPLAEEIMRRIVENAVVKDPRMAASLLRLHFH 69 (128)
Q Consensus 36 ~sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FH 69 (128)
+|||.|+..+.+...+ +.+|=|-||
T Consensus 11 sSCPpAD~~L~~l~~~---------~~Vi~LafH 35 (202)
T PF06764_consen 11 SSCPPADRLLSELAAR---------PDVIALAFH 35 (202)
T ss_dssp TT-HHHHHHHHHHHHH---------TSSEEEEEE
T ss_pred CCCcHHHHHHHHhhcC---------CCEEEEEec
Confidence 5899999988877666 477889999
No 22
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=27.91 E-value=67 Score=29.31 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHHHhhhcC
Q 040977 1 MENVRILLLIVLMFMLHGRKIS 22 (128)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (128)
|+.++..++++.+|.+.++++.
T Consensus 1 MGt~srAALvLacLAvaSaASe 22 (544)
T PF05782_consen 1 MGTMSRAALVLACLAVASAASE 22 (544)
T ss_pred CchHHHHHHHHHHHHHHHHhhc
Confidence 8889988888888877766665
No 23
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=27.40 E-value=65 Score=23.46 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=9.3
Q ss_pred CCCCCCCcCcccCC
Q 040977 24 EGDGVLVQDYYKET 37 (128)
Q Consensus 24 ~~~~~L~~~fY~~s 37 (128)
+....+++|-|..+
T Consensus 22 a~~~~~kpGlWe~t 35 (162)
T PF12276_consen 22 AAAPDIKPGLWEVT 35 (162)
T ss_pred cccCCCCCcccEEE
Confidence 44566888887643
No 24
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.21 E-value=1e+02 Score=20.60 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040977 4 VRILLLIVLMFMLHGRK 20 (128)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (128)
.|++++.+||+.+++.+
T Consensus 3 ~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 3 SKLIVIALLCVALVAIV 19 (65)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 35677777787765543
No 25
>PHA03163 hypothetical protein; Provisional
Probab=27.07 E-value=86 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=18.8
Q ss_pred HHHHHHHHHH--HHhhh-cCCCCCCCCCcCcccCCCc
Q 040977 6 ILLLIVLMFM--LHGRK-ISGEGDGVLVQDYYKETCP 39 (128)
Q Consensus 6 ~~~~~~~~~~--~~~~~-~~~~~~~~L~~~fY~~sCP 39 (128)
+++++.+|++ +.+.. ..-.-.++-..+||+.+|-
T Consensus 10 i~~li~lcl~~nv~~~~~~~n~t~p~~~~~FYs~~C~ 46 (92)
T PHA03163 10 IFLLICLCLLDNVSQVLCQNNSTTPHDFDMFHQYDCN 46 (92)
T ss_pred HHHHHHHHHhhhhHHHHHhcCCCCCCCCcccccCCCC
Confidence 4556666775 22111 1111224567889999994
No 26
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=25.88 E-value=59 Score=20.92 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=10.5
Q ss_pred cCcccCCCccHHHH
Q 040977 31 QDYYKETCPLAEEI 44 (128)
Q Consensus 31 ~~fY~~sCP~~E~i 44 (128)
..||..+||.-..+
T Consensus 3 i~~~a~~C~~C~~~ 16 (76)
T TIGR00412 3 IQIYGTGCANCQMT 16 (76)
T ss_pred EEEECCCCcCHHHH
Confidence 46999999975543
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.79 E-value=50 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.501 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhccccccchhheee
Q 040977 44 IMRRIVENAVVKDPRMAASLLRLHF 68 (128)
Q Consensus 44 iV~~~v~~~~~~d~~~aa~lLRL~F 68 (128)
|.|..+++.++++|++-+..+|+.+
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~ 48 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMM 48 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 7889999999999999999999654
No 28
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=22.39 E-value=51 Score=31.39 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=26.7
Q ss_pred CCccHHHHHHHHHHHHHHhccccccchhheeeccccccccCchhhhhc
Q 040977 37 TCPLAEEIMRRIVENAVVKDPRMAASLLRLHFHDCFLMGCDALVLLES 84 (128)
Q Consensus 37 sCP~~E~iV~~~v~~~~~~d~~~aa~lLRL~FHDCFV~GCDaSiLLd~ 84 (128)
-||-+++++|+.|...-+. --|---|||||--+.+
T Consensus 671 gcpladks~Rslma~~sqe-------------LkCPTPGCDGSGHiTG 705 (968)
T KOG3803|consen 671 GCPLADKSLRSLMAAGSQE-------------LKCPTPGCDGSGHITG 705 (968)
T ss_pred CCchhHHHHHHHHhccccc-------------ccCCCCCCCCCCcccc
Confidence 5999999999887655333 1366779999998865
No 29
>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion]
Probab=21.91 E-value=64 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccccccchhheeeccccccc
Q 040977 45 MRRIVENAVVKDPRMAASLLRLHFHDCFLMG 75 (128)
Q Consensus 45 V~~~v~~~~~~d~~~aa~lLRL~FHDCFV~G 75 (128)
....++..+.-++.-++.==||+.||||..|
T Consensus 113 fEREi~Dm~Gl~~vg~PD~RRLvLpddwPeg 143 (165)
T COG3262 113 FEREIRDMYGLDPVGAPDPRRLVLPDDWPEG 143 (165)
T ss_pred HHHHHHHhhCcccCCCCCcceeeccccCCcc
Confidence 3456888888899999999999999999765
No 30
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=21.46 E-value=67 Score=30.48 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHhccccccchhheeeccccc-------cccCch-hhhhcCCCCcccccCCCCCC-cc-chHHHHHHHHHHHhh
Q 040977 47 RIVENAVVKDPRMAASLLRLHFHDCFL-------MGCDAL-VLLESYGGMVTEKQAGPNVN-SV-RGFEVIDEIKFILED 116 (128)
Q Consensus 47 ~~v~~~~~~d~~~aa~lLRL~FHDCFV-------~GCDaS-iLLd~~~~~~~ek~a~~n~~-~l-rgf~~Id~iKa~lE~ 116 (128)
..++..+.......+-|+|+-+|+.-- .|+.|+ |-+ .+|++-..|.. .| +..++++.||++-..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 356777777788899999999998731 133333 222 23677777761 23 467788899987633
Q ss_pred h-CC-CcccccccC
Q 040977 117 A-CP-HTVSCALIF 128 (128)
Q Consensus 117 ~-CP-g~VSCADIl 128 (128)
. -. ..||=||++
T Consensus 516 ~~~~~~~vS~ADLi 529 (726)
T PRK15061 516 AQSGGKKVSLADLI 529 (726)
T ss_pred ccCCCCceeHHHHH
Confidence 2 12 248988863
No 31
>PF01530 zf-C2HC: Zinc finger, C2HC type; InterPro: IPR002515 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (C2HC) type zinc finger domain found in eukaryotes. Proteins containing these domains include: MYST family histone acetyltransferases [, [] Myelin transcription factor Myt1 [] Suppressor of tumourigenicity protein 18 (ST18) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2CS8_A 1PXE_A 2JX1_A 2JYD_A.
Probab=21.23 E-value=41 Score=19.43 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=10.3
Q ss_pred cccccccCchhhhhc
Q 040977 70 DCFLMGCDALVLLES 84 (128)
Q Consensus 70 DCFV~GCDaSiLLd~ 84 (128)
-|-+.||||+--+.+
T Consensus 3 ~CPtpGCdg~GHi~G 17 (31)
T PF01530_consen 3 KCPTPGCDGSGHITG 17 (31)
T ss_dssp SSSSTT--SCSTTTS
T ss_pred cCCCCCCCccccccC
Confidence 377889999988865
No 32
>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only]
Probab=20.82 E-value=35 Score=27.01 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=18.9
Q ss_pred hhheeeccccccccCchhhhhc
Q 040977 63 LLRLHFHDCFLMGCDALVLLES 84 (128)
Q Consensus 63 lLRL~FHDCFV~GCDaSiLLd~ 84 (128)
+-|+.|--||+.||=|.+-|+.
T Consensus 116 ~~~~~f~~C~p~GC~A~v~l~~ 137 (181)
T COG5342 116 IGKLYFVTCFPDGCYAEVPLDD 137 (181)
T ss_pred ceeEEEEEecCCceEEEeeCCH
Confidence 3578999999999999998864
No 33
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=20.18 E-value=26 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.239 Sum_probs=19.5
Q ss_pred ccccchhheeeccccccccCch
Q 040977 58 RMAASLLRLHFHDCFLMGCDAL 79 (128)
Q Consensus 58 ~~aa~lLRL~FHDCFV~GCDaS 79 (128)
..+.++|-++||=||+.|-.||
T Consensus 6 ~~pva~lcfff~~lfi~g~~gs 27 (160)
T PF03076_consen 6 NRPVAFLCFFFYFLFICGSVGS 27 (160)
T ss_pred cccHHHHHHHHHHHheecccCC
Confidence 4578899999999999998887
Done!