BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040978
MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFP
SLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPLHISLL

High Scoring Gene Products

Symbol, full name Information P value
RLP56
AT5G49290 		protein from Arabidopsis thaliana 0.00094

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040978
        (104 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2155909 - symbol:RLP56 "AT5G49290" species:370...    86  0.00094   2


>TAIR|locus:2155909 [details] [associations]
            symbol:RLP56 "AT5G49290" species:3702 "Arabidopsis
            thaliana" [GO:0007165 "signal transduction" evidence=IC]
            Pfam:PF00560 InterPro:IPR001611 PROSITE:PS51450 EMBL:CP002688
            InterPro:IPR013210 Pfam:PF08263 IPI:IPI00518781 RefSeq:NP_199740.4
            UniGene:At.55450 ProteinModelPortal:F4K4T3 SMR:F4K4T3
            EnsemblPlants:AT5G49290.1 GeneID:834989 KEGG:ath:AT5G49290
            OMA:RCEECEY ArrayExpress:F4K4T3 Uniprot:F4K4T3
        Length = 908

 Score = 86 (35.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query:     4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46
             E  +  NLELLD+S N I+  +  + +  L+KLK+LDLS  G+
Sbjct:   165 ELKNLTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGI 207

 Score = 34 (17.0 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query:    85 NFTNLEYLKLNDS 97
             NFT+L  L++N++
Sbjct:   485 NFTSLIVLRINNN 497


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        93   0.00091  102 3  11 22  0.50    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  464 (49 KB)
  Total size of DFA:  85 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.30u 0.09s 10.39t   Elapsed:  00:00:02
  Total cpu time:  10.30u 0.09s 10.39t   Elapsed:  00:00:02
  Start:  Tue May 21 01:10:13 2013   End:  Tue May 21 01:10:15 2013

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