Query 040978
Match_columns 104
No_of_seqs 115 out of 2341
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.4 2.7E-13 5.9E-18 98.8 6.2 96 2-104 492-588 (968)
2 PLN00113 leucine-rich repeat r 99.4 1.2E-12 2.7E-17 95.5 6.7 91 4-101 159-250 (968)
3 PLN03150 hypothetical protein; 99.3 3.7E-12 7.9E-17 89.7 7.0 87 11-104 420-507 (623)
4 PLN03150 hypothetical protein; 99.2 5.5E-11 1.2E-15 83.9 7.5 92 1-99 434-527 (623)
5 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 5.9E-16 73.1 4.3 86 7-101 40-127 (175)
6 PF13855 LRR_8: Leucine rich r 99.2 3.2E-11 6.9E-16 60.9 3.4 57 36-98 3-60 (61)
7 PF13855 LRR_8: Leucine rich r 99.2 4.3E-11 9.3E-16 60.5 3.7 61 9-72 1-61 (61)
8 KOG0617 Ras suppressor protein 99.1 8.1E-13 1.8E-17 79.5 -3.7 89 3-99 73-162 (264)
9 KOG0617 Ras suppressor protein 99.1 4.1E-12 8.9E-17 76.5 -1.4 92 1-101 48-141 (264)
10 KOG4194 Membrane glycoprotein 99.0 7.9E-12 1.7E-16 86.5 -3.1 87 7-100 291-378 (873)
11 KOG4194 Membrane glycoprotein 98.9 8E-10 1.7E-14 76.8 1.8 90 5-101 241-331 (873)
12 KOG4237 Extracellular matrix p 98.8 2.6E-09 5.7E-14 71.2 2.5 90 4-100 269-359 (498)
13 PF14580 LRR_9: Leucine-rich r 98.8 4.2E-09 9.2E-14 63.7 3.0 85 6-101 16-102 (175)
14 KOG0472 Leucine-rich repeat pr 98.7 6.8E-10 1.5E-14 74.2 -1.9 90 1-101 198-289 (565)
15 KOG0472 Leucine-rich repeat pr 98.7 2E-09 4.3E-14 72.1 0.2 93 2-100 428-541 (565)
16 KOG0618 Serine/threonine phosp 98.6 4.1E-09 8.9E-14 76.1 -0.8 90 2-98 376-487 (1081)
17 KOG0444 Cytoskeletal regulator 98.6 4.5E-09 9.7E-14 74.1 -1.3 93 1-101 47-140 (1255)
18 KOG0444 Cytoskeletal regulator 98.6 2.4E-09 5.2E-14 75.4 -2.9 44 1-46 214-257 (1255)
19 cd00116 LRR_RI Leucine-rich re 98.5 7.1E-08 1.5E-12 62.6 3.1 89 9-100 137-234 (319)
20 cd00116 LRR_RI Leucine-rich re 98.5 3.7E-08 8.1E-13 63.9 1.6 94 4-100 76-178 (319)
21 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.7E-13 70.6 -1.6 91 1-102 158-249 (722)
22 PLN03210 Resistant to P. syrin 98.5 1.3E-06 2.9E-11 65.7 8.6 85 5-98 630-715 (1153)
23 PLN03210 Resistant to P. syrin 98.4 1.4E-06 3E-11 65.6 8.1 87 8-103 610-697 (1153)
24 KOG1259 Nischarin, modulator o 98.4 7.7E-08 1.7E-12 62.8 1.0 38 6-46 304-341 (490)
25 PF12799 LRR_4: Leucine Rich r 98.3 1.4E-06 3E-11 41.1 4.1 35 10-46 2-36 (44)
26 KOG4658 Apoptotic ATPase [Sign 98.3 2.7E-07 5.8E-12 67.6 1.7 86 4-97 566-652 (889)
27 KOG4237 Extracellular matrix p 98.3 5.6E-08 1.2E-12 65.0 -1.6 83 10-99 68-152 (498)
28 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.2E-11 41.6 3.1 40 34-76 1-40 (44)
29 KOG1644 U2-associated snRNP A' 98.3 1.5E-06 3.3E-11 53.6 4.6 82 10-100 43-126 (233)
30 PRK15387 E3 ubiquitin-protein 98.3 1E-06 2.2E-11 63.9 4.3 58 35-103 403-461 (788)
31 KOG0618 Serine/threonine phosp 98.3 7.9E-08 1.7E-12 69.7 -1.4 82 7-97 428-510 (1081)
32 KOG1259 Nischarin, modulator o 98.2 1.6E-07 3.5E-12 61.3 -0.7 91 4-102 324-414 (490)
33 KOG1644 U2-associated snRNP A' 98.1 8.8E-06 1.9E-10 50.3 4.6 88 3-96 58-149 (233)
34 KOG0531 Protein phosphatase 1, 98.0 3.1E-06 6.8E-11 57.4 2.2 85 5-100 91-175 (414)
35 PRK15370 E3 ubiquitin-protein 98.0 2.9E-05 6.4E-10 56.4 6.9 34 61-101 263-297 (754)
36 KOG1859 Leucine-rich repeat pr 97.9 2.1E-07 4.6E-12 66.5 -4.6 83 6-100 184-267 (1096)
37 PRK15370 E3 ubiquitin-protein 97.9 5.6E-05 1.2E-09 55.0 6.9 77 9-101 199-276 (754)
38 PRK15387 E3 ubiquitin-protein 97.9 5.2E-05 1.1E-09 55.3 6.6 15 60-74 302-316 (788)
39 KOG4579 Leucine-rich repeat (L 97.9 1.1E-06 2.4E-11 51.4 -1.8 79 10-98 54-134 (177)
40 COG4886 Leucine-rich repeat (L 97.9 6.5E-06 1.4E-10 55.3 1.4 82 9-99 116-198 (394)
41 COG4886 Leucine-rich repeat (L 97.8 1.9E-05 4.1E-10 53.1 3.0 87 3-98 133-220 (394)
42 KOG3207 Beta-tubulin folding c 97.8 8.1E-06 1.8E-10 55.4 0.9 87 7-99 170-258 (505)
43 KOG0532 Leucine-rich repeat (L 97.8 6.8E-07 1.5E-11 62.3 -4.5 93 1-100 113-224 (722)
44 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.3E-11 63.1 -3.8 86 4-100 204-292 (1096)
45 KOG2739 Leucine-rich acidic nu 97.7 3.4E-05 7.5E-10 49.1 2.6 66 30-99 61-128 (260)
46 KOG3665 ZYG-1-like serine/thre 97.7 4.1E-05 8.8E-10 55.3 3.0 91 6-101 170-264 (699)
47 KOG2739 Leucine-rich acidic nu 97.5 4.3E-05 9.4E-10 48.7 1.6 89 3-95 59-151 (260)
48 KOG1909 Ran GTPase-activating 97.5 1.4E-05 3E-10 52.9 -0.7 95 4-99 208-310 (382)
49 KOG0531 Protein phosphatase 1, 97.5 2.8E-05 6E-10 52.9 0.4 84 8-101 71-154 (414)
50 KOG4658 Apoptotic ATPase [Sign 97.5 5.5E-05 1.2E-09 55.9 1.7 84 7-98 543-629 (889)
51 KOG3207 Beta-tubulin folding c 97.4 7E-05 1.5E-09 51.1 1.3 88 6-98 143-233 (505)
52 KOG4579 Leucine-rich repeat (L 97.4 5.2E-06 1.1E-10 48.6 -3.4 63 6-73 74-136 (177)
53 KOG3665 ZYG-1-like serine/thre 97.3 0.00014 3E-09 52.6 2.4 85 8-98 147-231 (699)
54 KOG1909 Ran GTPase-activating 97.0 0.00042 9.1E-09 46.1 1.7 95 4-101 180-284 (382)
55 KOG2123 Uncharacterized conser 97.0 4.1E-05 9E-10 49.8 -2.9 65 6-75 38-103 (388)
56 KOG2982 Uncharacterized conser 96.7 0.00034 7.3E-09 46.1 -0.4 14 84-97 143-156 (418)
57 KOG2123 Uncharacterized conser 96.6 4.8E-05 1E-09 49.5 -4.6 84 8-102 18-103 (388)
58 PF13306 LRR_5: Leucine rich r 96.5 0.013 2.8E-07 33.1 5.6 59 5-68 8-66 (129)
59 PF00560 LRR_1: Leucine Rich R 96.4 0.0015 3.3E-08 25.9 0.9 15 11-26 2-16 (22)
60 COG5238 RNA1 Ran GTPase-activa 96.4 0.0037 8.1E-08 40.9 2.8 94 3-100 86-227 (388)
61 PF13306 LRR_5: Leucine rich r 96.3 0.02 4.4E-07 32.3 5.6 82 4-96 30-112 (129)
62 KOG2982 Uncharacterized conser 96.0 0.0051 1.1E-07 40.7 2.1 64 33-100 70-134 (418)
63 PF13504 LRR_7: Leucine rich r 95.4 0.013 2.8E-07 21.7 1.4 13 10-22 2-14 (17)
64 KOG2120 SCF ubiquitin ligase, 95.1 0.0063 1.4E-07 40.3 0.1 57 32-96 311-372 (419)
65 KOG2120 SCF ubiquitin ligase, 95.1 0.0008 1.7E-08 44.4 -3.9 85 10-100 186-273 (419)
66 COG5238 RNA1 Ran GTPase-activa 94.3 0.028 6E-07 37.0 1.6 91 5-99 26-132 (388)
67 PRK15386 type III secretion pr 93.5 0.32 6.9E-06 33.8 5.6 57 5-70 48-104 (426)
68 smart00370 LRR Leucine-rich re 93.4 0.11 2.4E-06 21.0 2.2 14 9-22 2-15 (26)
69 smart00369 LRR_TYP Leucine-ric 93.4 0.11 2.4E-06 21.0 2.2 14 9-22 2-15 (26)
70 KOG3864 Uncharacterized conser 93.1 0.015 3.4E-07 36.2 -1.0 80 11-96 103-185 (221)
71 PF13516 LRR_6: Leucine Rich r 91.6 0.14 3.1E-06 20.3 1.3 12 35-46 3-14 (24)
72 KOG1947 Leucine rich repeat pr 91.5 0.17 3.7E-06 34.6 2.4 89 5-98 210-306 (482)
73 KOG3864 Uncharacterized conser 91.0 0.041 8.8E-07 34.4 -0.9 65 4-70 120-186 (221)
74 smart00368 LRR_RI Leucine rich 89.1 0.45 9.7E-06 19.7 1.8 14 87-100 2-15 (28)
75 smart00365 LRR_SD22 Leucine-ri 89.0 0.49 1.1E-05 19.5 1.9 14 87-100 2-15 (26)
76 KOG0473 Leucine-rich repeat pr 88.6 0.0045 9.7E-08 39.7 -6.5 81 9-99 42-123 (326)
77 KOG3763 mRNA export factor TAP 86.3 0.62 1.3E-05 33.4 2.2 11 60-70 244-254 (585)
78 PRK15386 type III secretion pr 84.5 2.4 5.2E-05 29.6 4.3 56 30-97 48-104 (426)
79 KOG1947 Leucine rich repeat pr 81.4 0.96 2.1E-05 31.0 1.5 66 6-73 240-308 (482)
80 smart00364 LRR_BAC Leucine-ric 81.1 1.4 3E-05 18.2 1.4 13 10-22 3-15 (26)
81 smart00367 LRR_CC Leucine-rich 79.9 1.7 3.6E-05 17.5 1.5 11 34-44 2-12 (26)
82 KOG3763 mRNA export factor TAP 73.4 2.1 4.5E-05 30.9 1.3 66 7-75 216-285 (585)
83 TIGR00864 PCC polycystin catio 66.7 4.9 0.00011 34.4 2.2 35 40-76 1-35 (2740)
84 KOG0473 Leucine-rich repeat pr 56.2 0.099 2.1E-06 33.8 -6.9 60 9-73 65-124 (326)
85 TIGR00864 PCC polycystin catio 55.0 12 0.00026 32.4 2.5 31 15-46 1-31 (2740)
86 KOG4341 F-box protein containi 38.4 19 0.00042 25.5 1.2 65 7-71 318-383 (483)
87 KOG4308 LRR-containing protein 29.7 2.6 5.7E-05 29.9 -4.0 14 33-46 114-127 (478)
88 smart00446 LRRcap occurring C- 28.0 19 0.0004 14.8 -0.1 11 6-16 10-20 (26)
89 TIGR02167 Liste_lipo_26 bacter 25.8 37 0.0008 13.7 0.6 13 6-18 3-15 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.43 E-value=2.7e-13 Score=98.84 Aligned_cols=96 Identities=28% Similarity=0.374 Sum_probs=71.4
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+ .+..|..+..+++|+.+++++|.+.+.. |
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----p 564 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQL--SGQIPASFSEMPVLSQLDLSQNQLSGEI----P 564 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcc--cccCChhHhCcccCCEEECCCCcccccC----C
Confidence 3455667777777777777776666 6777777777888877777 5666777777777888888888877777 7
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+..+.+|+.+++++|.+.|.+|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 77777788888888888777665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1.2e-12 Score=95.49 Aligned_cols=91 Identities=25% Similarity=0.385 Sum_probs=44.8
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.++.+++|++|++++|.+.+..| ..+..+++|++|++++|.+ ....|..+..+.+|+.|++++|.+.+.. | .
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~ 231 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQL--VGQIPRELGQMKSLKWIYLGYNNLSGEI----PYE 231 (968)
T ss_pred HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCC--cCcCChHHcCcCCccEEECcCCccCCcC----Chh
Confidence 34445555555555555544444 4445555555555555554 3334444444555555555555544444 4 4
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|++|++++|.+.+
T Consensus 232 l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred HhcCCCCCEEECcCceecc
Confidence 4444455555554444443
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=3.7e-12 Score=89.70 Aligned_cols=87 Identities=29% Similarity=0.417 Sum_probs=67.7
Q ss_pred CCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCCC
Q 040978 11 LELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTNL 89 (104)
Q Consensus 11 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L 89 (104)
++.|++++|.+.+..| ..+..+++|+.|++++|.+ .+..|..+..+++|+.|++++|.+.+.. | .+..+++|
T Consensus 420 v~~L~L~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l--~g~iP~~~~~l~~L~~LdLs~N~lsg~i----P~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYNSFNGSI----PESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCccccCC-HHHhCCCCCCEEECCCCcc--cCcCChHHhCCCCCCEEECCCCCCCCCC----chHHhcCCCC
Confidence 5667788888777777 7777788888888888887 5667777777888888888888887777 7 77788888
Q ss_pred cEEEcCCCCCCCCCC
Q 040978 90 EYLKLNDSPLHISLL 104 (104)
Q Consensus 90 ~~l~l~~n~~~~~~~ 104 (104)
+.|++++|.++|.+|
T Consensus 493 ~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 493 RILNLNGNSLSGRVP 507 (623)
T ss_pred CEEECcCCcccccCC
Confidence 888888888877765
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=5.5e-11 Score=83.85 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=80.2
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+|+.+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|++ .+..|..+..+++|+.|++++|.+.+..
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~l--sg~iP~~l~~L~~L~~L~Ls~N~l~g~i---- 506 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSF--NGSIPESLGQLTSLRILNLNGNSLSGRV---- 506 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCC--CCCCchHHhcCCCCCEEECcCCcccccC----
Confidence 35677889999999999999998888 8899999999999999999 6788999999999999999999999888
Q ss_pred c-ccCC-CCCCcEEEcCCCCC
Q 040978 81 Q-ELHN-FTNLEYLKLNDSPL 99 (104)
Q Consensus 81 ~-~~~~-~~~L~~l~l~~n~~ 99 (104)
| .+.. ...+..+++.+|..
T Consensus 507 P~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 507 PAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ChHHhhccccCceEEecCCcc
Confidence 8 6654 34667788888753
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.7e-11 Score=73.13 Aligned_cols=86 Identities=34% Similarity=0.540 Sum_probs=41.5
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc--ccC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ--ELH 84 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~ 84 (104)
.+.+|+.|++++|.+. .+ ..+..++.|+.|++++|++ ....+.....+++|+.|++++|.+.... . .++
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I--~~i~~~l~~~lp~L~~L~L~~N~I~~l~----~l~~L~ 110 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRI--SSISEGLDKNLPNLQELYLSNNKISDLN----ELEPLS 110 (175)
T ss_dssp T-TT--EEE-TTS--S-----TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCC----CCGGGG
T ss_pred hhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCC--CccccchHHhCCcCCEEECcCCcCCChH----HhHHHH
Confidence 4678999999999999 44 4688899999999999999 3322222235889999999999998553 3 677
Q ss_pred CCCCCcEEEcCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~ 101 (104)
.+++|+.|++.+|+++.
T Consensus 111 ~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp G-TT--EEE-TT-GGGG
T ss_pred cCCCcceeeccCCcccc
Confidence 89999999999999864
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=3.2e-11 Score=60.93 Aligned_cols=57 Identities=37% Similarity=0.519 Sum_probs=26.3
Q ss_pred CCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCCCcEEEcCCCC
Q 040978 36 LKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 36 L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L~~l~l~~n~ 98 (104)
|+.+++++|++ ....+..|..+++|+.+++++|.+.... + .|..+++|+.+++++|.
T Consensus 3 L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIP----PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEE----TTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccC----HHHHcCCCCCCEEeCcCCc
Confidence 44444444444 2222234444455555555555554333 3 44555555555555544
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=4.3e-11 Score=60.46 Aligned_cols=61 Identities=38% Similarity=0.541 Sum_probs=53.7
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNF 72 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 72 (104)
++|++|++++|.+. .++...|.++++|+.+++++|.+ ....+..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l--~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNL--TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSE--SEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCcc--CccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999 55547889999999999999999 566667899999999999999975
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=8.1e-13 Score=79.49 Aligned_cols=89 Identities=27% Similarity=0.516 Sum_probs=39.6
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..+..+++|+.|+++.|.+. ..| ..|+.++-|+.|+++.|++. ...+|..|..+..|+.|++++|.|. .. |
T Consensus 73 ~~issl~klr~lnvgmnrl~-~lp-rgfgs~p~levldltynnl~-e~~lpgnff~m~tlralyl~dndfe-~l----p~ 144 (264)
T KOG0617|consen 73 TSISSLPKLRILNVGMNRLN-ILP-RGFGSFPALEVLDLTYNNLN-ENSLPGNFFYMTTLRALYLGDNDFE-IL----PP 144 (264)
T ss_pred hhhhhchhhhheecchhhhh-cCc-cccCCCchhhhhhccccccc-cccCCcchhHHHHHHHHHhcCCCcc-cC----Ch
Confidence 33344444444444444443 334 44444444444444444441 1223333333444444444444444 22 4
Q ss_pred ccCCCCCCcEEEcCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~ 99 (104)
.++.+.+|++|.+.+|.+
T Consensus 145 dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhhhcceeEEeeccCch
Confidence 555566666666665543
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=4.1e-12 Score=76.49 Aligned_cols=92 Identities=30% Similarity=0.459 Sum_probs=80.5
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC-cccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT-ETVTIT 79 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~ 79 (104)
+|+.++.+.+|+.|++.+|.++ .+| ..++.++.|+.|+++.|++ ...|..|+.+|.|+.|++..|++. ...
T Consensus 48 vppnia~l~nlevln~~nnqie-~lp-~~issl~klr~lnvgmnrl---~~lprgfgs~p~levldltynnl~e~~l--- 119 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIE-ELP-TSISSLPKLRILNVGMNRL---NILPRGFGSFPALEVLDLTYNNLNENSL--- 119 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhh-hcC-hhhhhchhhhheecchhhh---hcCccccCCCchhhhhhccccccccccC---
Confidence 4777888999999999999999 788 8889999999999999998 678889999999999999999886 345
Q ss_pred cc-ccCCCCCCcEEEcCCCCCCC
Q 040978 80 TQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 80 ~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
| .|..+..|+.|++++|.+..
T Consensus 120 -pgnff~m~tlralyl~dndfe~ 141 (264)
T KOG0617|consen 120 -PGNFFYMTTLRALYLGDNDFEI 141 (264)
T ss_pred -CcchhHHHHHHHHHhcCCCccc
Confidence 7 88899999999999998754
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=7.9e-12 Score=86.47 Aligned_cols=87 Identities=29% Similarity=0.399 Sum_probs=39.7
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
++.+|++|++++|.|....+ .....++.|+.|+++.|++ ....++.|..+..|+.|.++.|.++... . .|.+
T Consensus 291 gLt~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i--~~l~~~sf~~L~~Le~LnLs~Nsi~~l~----e~af~~ 363 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRI--TRLDEGSFRVLSQLEELNLSHNSIDHLA----EGAFVG 363 (873)
T ss_pred ccchhhhhccchhhhheeec-chhhhcccceeEecccccc--ccCChhHHHHHHHhhhhcccccchHHHH----hhHHHH
Confidence 34445555555555553333 4444445555555555555 2222334444444444444444444333 3 4444
Q ss_pred CCCCcEEEcCCCCCC
Q 040978 86 FTNLEYLKLNDSPLH 100 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~ 100 (104)
+++|+.|+++.|.++
T Consensus 364 lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELS 378 (873)
T ss_pred hhhhhhhcCcCCeEE
Confidence 444444444444443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.87 E-value=8e-10 Score=76.82 Aligned_cols=90 Identities=22% Similarity=0.248 Sum_probs=64.6
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|.++++|+.|.+..|.+..... ..|.++..++.|++..|++ ...-.+++..+..|++|+++.|.+.+.. + .|
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~NaI~rih----~d~W 313 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNAIQRIH----IDSW 313 (873)
T ss_pred hcCchhhhhhhhhhcCcccccC-cceeeecccceeecccchh--hhhhcccccccchhhhhccchhhhheee----cchh
Confidence 4566666666677777663333 6667777777777777777 3333456667788888888888888777 7 88
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|+.|+++.|.+..
T Consensus 314 sftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcccceeEecccccccc
Confidence 888888888888887754
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=2.6e-09 Score=71.15 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=78.8
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|+++++|+.+++++|.+++.-+ ..|.+...++.|.+.+|++ .......|..+..|+.|++.+|+++.+. | .
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L~~N~it~~~----~~a 341 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSLYDNQITTVA----PGA 341 (498)
T ss_pred HHhhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeeecCCeeEEEe----ccc
Confidence 47889999999999999996556 8899999999999999999 4444456888999999999999999888 8 9
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
|..+.+|..+.+-.|++.
T Consensus 342 F~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccccceeeeeehccCccc
Confidence 999999999999988863
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=4.2e-09 Score=63.66 Aligned_cols=85 Identities=31% Similarity=0.438 Sum_probs=28.2
Q ss_pred CCCCCCCEEECCCCCCCCccccCccC-CCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc-
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYS-GLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL- 83 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~- 83 (104)
-+...+++|++++|.+. .+ +.+. .+.+|+.|++++|.+ ..+ +.+..++.|+.|++++|.++... +.+
T Consensus 16 ~n~~~~~~L~L~~n~I~-~I--e~L~~~l~~L~~L~Ls~N~I---~~l-~~l~~L~~L~~L~L~~N~I~~i~----~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TI--ENLGATLDKLEVLDLSNNQI---TKL-EGLPGLPRLKTLDLSNNRISSIS----EGLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS-----S---TT----TT--EEE--SS---S-C----HHHH
T ss_pred ccccccccccccccccc-cc--cchhhhhcCCCEEECCCCCC---ccc-cCccChhhhhhcccCCCCCCccc----cchH
Confidence 34556899999999998 44 3555 578999999999999 333 34667899999999999999653 334
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|+.|++++|.|..
T Consensus 85 ~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISD 102 (175)
T ss_dssp HH-TT--EEE-TTS---S
T ss_pred HhCCcCCEEECcCCcCCC
Confidence 468999999999999854
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.74 E-value=6.8e-10 Score=74.22 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=50.2
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhc-CCCCCccEEeccCCcCCcccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSM-GSFPSLNNLYLSSNNFTETVTIT 79 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~ 79 (104)
+|+.++.+.+|..|++..|.+. ..| .|.++..|..++++.|.+ ...|... ..++++..+++.+|+++ ..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i---~~lpae~~~~L~~l~vLDLRdNklk-e~--- 267 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQI---EMLPAEHLKHLNSLLVLDLRDNKLK-EV--- 267 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHH---HhhHHHHhcccccceeeeccccccc-cC---
Confidence 3556666666666666666665 443 455555555555555555 3333332 25555666666666655 33
Q ss_pred cc-ccCCCCCCcEEEcCCCCCCC
Q 040978 80 TQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 80 ~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
| .+-.+++|..+|+++|.+++
T Consensus 268 -Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 268 -PDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred -chHHHHhhhhhhhcccCCcccc
Confidence 4 55555556666666665554
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.73 E-value=2e-09 Score=72.07 Aligned_cols=93 Identities=29% Similarity=0.384 Sum_probs=72.6
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccC---------------------CchhhhhcCCCC
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRD---------------------GSKLLQSMGSFP 60 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------------------~~~~~~~~~~l~ 60 (104)
|..++.+++|..|++++|.+. .+| ..++.+..||.++++.|++.. ....++.+..+.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP-~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLP-EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcc-hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 455677888999999998888 778 777888889999998887621 111223356778
Q ss_pred CccEEeccCCcCCccccccccccCCCCCCcEEEcCCCCCC
Q 040978 61 SLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 61 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 100 (104)
.|..|++.+|.+..+. |.+++|.+|++|.+.+|+|.
T Consensus 506 nL~tLDL~nNdlq~IP----p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQIP----PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchhhCC----hhhccccceeEEEecCCccC
Confidence 8999999999998443 39999999999999999987
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=4.1e-09 Score=76.07 Aligned_cols=90 Identities=30% Similarity=0.479 Sum_probs=57.5
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhh----------------------cCCC
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQS----------------------MGSF 59 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----------------------~~~l 59 (104)
.+.+.++.+|+.|++++|.+. ..|...+..+..|+.|++++|++ ..+|.. +.++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL---~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l 451 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKL---TTLPDTVANLGRLHTLRAHSNQLLSFPELAQL 451 (1081)
T ss_pred hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchh---hhhhHHHHhhhhhHHHhhcCCceeechhhhhc
Confidence 456677888888888888887 55646677788888888888887 333333 3345
Q ss_pred CCccEEeccCCcCCccccccccccCCCCCCcEEEcCCCC
Q 040978 60 PSLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 60 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 98 (104)
+.|+.+|++.|+++... ++.-...++|++|++++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~---l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVT---LPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhh---hhhhCCCcccceeeccCCc
Confidence 55666666666665322 0111122566777766664
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.60 E-value=4.5e-09 Score=74.10 Aligned_cols=93 Identities=24% Similarity=0.273 Sum_probs=71.6
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+|+.++.+.+|++|.+++|.+. .+. ..+..++.|+.+.++.|++++ ...|..+..+.-|..|++++|.+. ..
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R~N~LKn-sGiP~diF~l~dLt~lDLShNqL~-Ev---- 118 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQLR-EV---- 118 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhhcccccc-CCCCchhcccccceeeecchhhhh-hc----
Confidence 4777888888899999888887 455 677888888888888888853 334555667788888888888887 55
Q ss_pred c-ccCCCCCCcEEEcCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
| .+...+++.+|+++.|.|..
T Consensus 119 P~~LE~AKn~iVLNLS~N~Iet 140 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIET 140 (1255)
T ss_pred chhhhhhcCcEEEEcccCcccc
Confidence 7 77788888888888887654
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.58 E-value=2.4e-09 Score=75.42 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=27.7
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
+|+.+..+.+|..+|++.|++. ..| ..+..+++|+.|++++|.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCce
Confidence 3555666666666666666666 556 5555666666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=7.1e-08 Score=62.60 Aligned_cols=89 Identities=27% Similarity=0.380 Sum_probs=41.8
Q ss_pred CCCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCCch----hhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 9 NNLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSK----LLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
++|+.|++++|.+.+. .. ..+..+.+|+.|++++|.+ ... .+..+...++|+.+++++|.+.+..-..+
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~l--~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALA-KALRANRDLKELNLANNGI--GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHH-HHHHhCCCcCEEECcCCCC--chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 5566666666655521 11 2233444566666666655 211 12223334456666666665542210000
Q ss_pred c-ccCCCCCCcEEEcCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~ 100 (104)
. .+..+++|++|++++|.+.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHhcccCCCCEEecCCCcCc
Confidence 2 3344555666666665554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.52 E-value=3.7e-08 Score=63.89 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=46.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCC---CCEEeCCCCcccCCch----hhhhcCCC-CCccEEeccCCcCCcc
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRK---LKSLDLSRVGVRDGSK----LLQSMGSF-PSLNNLYLSSNNFTET 75 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~---L~~l~l~~~~~~~~~~----~~~~~~~l-~~L~~l~l~~n~~~~~ 75 (104)
.+..+++|+.|++++|.+.+..+ ..+..+.. |+.|++++|++ ... ....+..+ ++|+.+++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGL--GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCcc--chHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 34456667777776666653222 33333333 66666666666 211 11223344 5666666666666522
Q ss_pred cccccc-ccCCCCCCcEEEcCCCCCC
Q 040978 76 VTITTQ-ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 76 ~~~~~~-~~~~~~~L~~l~l~~n~~~ 100 (104)
....+. .+..+..|+++++++|.+.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 100002 3344455555555555554
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=1.3e-08 Score=70.62 Aligned_cols=91 Identities=25% Similarity=0.382 Sum_probs=75.4
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+|+.++...+|.+||.+.|.+. .+| ..+.++..|+.|.+++|++ ..+|..+..+ .|..||++.|++. .+
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn~l---~~lp~El~~L-pLi~lDfScNkis-~i---- 226 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRNHL---EDLPEELCSL-PLIRLDFSCNKIS-YL---- 226 (722)
T ss_pred CCcccccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhhhh---hhCCHHHhCC-ceeeeecccCcee-ec----
Confidence 3666777788888888888888 667 7788888888888888888 6677777754 4889999999998 56
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~ 102 (104)
| .|..|+.|++|.|.+|++.+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCC
Confidence 8 999999999999999998654
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=1.3e-06 Score=65.71 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=41.5
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
+..+++|+.++++++......| .+..+++|+.|++++|.. -...|..+..+.+|+.|++++|...... | .+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~L----p~~i 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEIL----PTGI 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCcc----CCcC
Confidence 3445555555555543222333 244455555555555533 2444555555666666666655433233 3 22
Q ss_pred CCCCCCcEEEcCCCC
Q 040978 84 HNFTNLEYLKLNDSP 98 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~ 98 (104)
.+++|+.|++++|.
T Consensus 702 -~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 702 -NLKSLYRLNLSGCS 715 (1153)
T ss_pred -CCCCCCEEeCCCCC
Confidence 44555555555543
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.44 E-value=1.4e-06 Score=65.62 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNF 86 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~ 86 (104)
..+|+.|++.+|.+. .++ ..+..+++|+.++++++.. -...| .+..+++|+.|++++|...... | .+..+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~~~--l~~ip-~ls~l~~Le~L~L~~c~~L~~l----p~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGSKN--LKEIP-DLSMATNLETLKLSDCSSLVEL----PSSIQYL 680 (1153)
T ss_pred ccCCcEEECcCcccc-ccc-cccccCCCCCEEECCCCCC--cCcCC-ccccCCcccEEEecCCCCcccc----chhhhcc
Confidence 467888888888877 556 6667788888888887653 24444 3667788888988887665566 7 88888
Q ss_pred CCCcEEEcCCCCCCCCC
Q 040978 87 TNLEYLKLNDSPLHISL 103 (104)
Q Consensus 87 ~~L~~l~l~~n~~~~~~ 103 (104)
++|+.|++++|...+.+
T Consensus 681 ~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 681 NKLEDLDMSRCENLEIL 697 (1153)
T ss_pred CCCCEEeCCCCCCcCcc
Confidence 99999999886543333
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=7.7e-08 Score=62.79 Aligned_cols=38 Identities=34% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
.-.|.++.|+++.|.+. .+ +.+..+++|+.|++++|.+
T Consensus 304 KL~Pkir~L~lS~N~i~-~v--~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIR-TV--QNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred hhccceeEEecccccee-ee--hhhhhcccceEeecccchh
Confidence 33566677777777766 33 3466677777777777766
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=1.4e-06 Score=41.08 Aligned_cols=35 Identities=40% Similarity=0.471 Sum_probs=14.3
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
+|++|++++|.+. .++ ..+..+++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCC
Confidence 3444444444444 333 2344444444444444444
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=2.7e-07 Score=67.64 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=71.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..++.|.+||+++|.-.+.+| ..++.+.+|++|+++...+ ..+|..++.+..|.+|++..+...... + .
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I---~~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i 637 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGI---SHLPSGLGNLKKLIYLNLEVTGRLESI----PGI 637 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCc---cccchHHHHHHhhheeccccccccccc----cch
Confidence 36779999999999887766788 8899999999999999998 578888999999999999887765455 5 5
Q ss_pred cCCCCCCcEEEcCCC
Q 040978 83 LHNFTNLEYLKLNDS 97 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n 97 (104)
...+.+|++|.+-..
T Consensus 638 ~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccEEEeecc
Confidence 566889998887554
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.30 E-value=5.6e-08 Score=64.99 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=60.3
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccC-CcCCcccccccc-ccCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSS-NNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~-~~~~~~ 87 (104)
....+++..|.|+ .+|+..|..+++|+.+++++|++ +...|.+|..+..+..+-+.+ |++++.. . .|+++.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~----k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLP----KGAFGGLS 140 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhh----hhHhhhHH
Confidence 4567788888888 66657888888899999999888 667788888887776665555 7777554 3 666666
Q ss_pred CCcEEEcCCCCC
Q 040978 88 NLEYLKLNDSPL 99 (104)
Q Consensus 88 ~L~~l~l~~n~~ 99 (104)
+++.|.+..|.+
T Consensus 141 slqrLllNan~i 152 (498)
T KOG4237|consen 141 SLQRLLLNANHI 152 (498)
T ss_pred HHHHHhcChhhh
Confidence 666665555443
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=1e-06 Score=41.55 Aligned_cols=40 Identities=30% Similarity=0.533 Sum_probs=32.7
Q ss_pred CCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccc
Q 040978 34 RKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETV 76 (104)
Q Consensus 34 ~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 76 (104)
++|+.|++++|++ ..++..+..+++|+.|++++|++++..
T Consensus 1 ~~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC---cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4689999999999 456777999999999999999998543
No 29
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.30 E-value=1.5e-06 Score=53.59 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=55.0
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc--ccCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ--ELHNFT 87 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~ 87 (104)
....+|+++|.+. .. ..|..++.|.+|.+.+|++ ....|..-..++.|..|.+.+|++.... . .+..|+
T Consensus 43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~----dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELG----DLDPLASCP 113 (233)
T ss_pred ccceecccccchh-hc--ccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhh----hcchhccCC
Confidence 4556677777766 33 4667777788888888887 3444443344567778888888777443 2 566777
Q ss_pred CCcEEEcCCCCCC
Q 040978 88 NLEYLKLNDSPLH 100 (104)
Q Consensus 88 ~L~~l~l~~n~~~ 100 (104)
.|+.|.+-+|+++
T Consensus 114 ~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 114 KLEYLTLLGNPVE 126 (233)
T ss_pred ccceeeecCCchh
Confidence 8888887777764
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.29 E-value=1e-06 Score=63.86 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCCCcEEEcCCCCCCCCC
Q 040978 35 KLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 35 ~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
+|+.|++++|++ ..+|.. ..+|+.|++++|.++ .+ | .+..+++|+.+++++|++++.+
T Consensus 403 ~L~~LdLS~N~L---ssIP~l---~~~L~~L~Ls~NqLt-~L----P~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 403 ELKELMVSGNRL---TSLPML---PSGLLSLSVYRNQLT-RL----PESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCCEEEccCCcC---CCCCcc---hhhhhhhhhccCccc-cc----ChHHhhccCCCeEECCCCCCCchH
Confidence 455555555555 223321 134566677777776 44 7 8888999999999999998764
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.28 E-value=7.9e-08 Score=69.71 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
.+..|+.|...+|.+. ..| .+..+++|+.+|++.|++ +..........++|+.|++++|.....- - .+..
T Consensus 428 ~~~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L--~~~~l~~~~p~p~LkyLdlSGN~~l~~d----~~~l~~ 498 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNL--SEVTLPEALPSPNLKYLDLSGNTRLVFD----HKTLKV 498 (1081)
T ss_pred hhhhhHHHhhcCCcee-ech--hhhhcCcceEEecccchh--hhhhhhhhCCCcccceeeccCCcccccc----hhhhHH
Confidence 3334444444444443 233 456788899999999999 3322222223489999999999854222 1 5666
Q ss_pred CCCCcEEEcCCC
Q 040978 86 FTNLEYLKLNDS 97 (104)
Q Consensus 86 ~~~L~~l~l~~n 97 (104)
++.+..+++.-|
T Consensus 499 l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 499 LKSLSQMDITLN 510 (1081)
T ss_pred hhhhhheecccC
Confidence 666666665544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=1.6e-07 Score=61.32 Aligned_cols=91 Identities=32% Similarity=0.366 Sum_probs=70.4
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL 83 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 83 (104)
.++.+++|+.||+++|.+. .+. .--..+.+++.|.++.|.+ ..+ ..++.+.+|..|++.+|++...- +|..+
T Consensus 324 nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIKtL~La~N~i---E~L-SGL~KLYSLvnLDl~~N~Ie~ld--eV~~I 395 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIKTLKLAQNKI---ETL-SGLRKLYSLVNLDLSSNQIEELD--EVNHI 395 (490)
T ss_pred hhhhcccceEeecccchhH-hhh-hhHhhhcCEeeeehhhhhH---hhh-hhhHhhhhheeccccccchhhHH--Hhccc
Confidence 4667899999999999988 332 2223467899999999988 332 44667888999999999998443 00178
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~ 102 (104)
+.+++|+++.+.+|++.+.
T Consensus 396 G~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccHHHHHhhcCCCcccc
Confidence 9999999999999998774
No 33
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=8.8e-06 Score=50.32 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=66.5
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhh--hhcCCCCCccEEeccCCcCCccccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLL--QSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+.|..++.|.+|.+..|.|+...| .--..+++++.|.+.+|.+ ..+. ..+..+|+|+.|.+-+|.+.... .-
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi---~~l~dl~pLa~~p~L~~Ltll~Npv~~k~--~Y 131 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSI---QELGDLDPLASCPKLEYLTLLGNPVEHKK--NY 131 (233)
T ss_pred ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcch---hhhhhcchhccCCccceeeecCCchhccc--Cc
Confidence 456778999999999999995444 3334457899999999998 3332 35678899999999999987432 00
Q ss_pred c--ccCCCCCCcEEEcCC
Q 040978 81 Q--ELHNFTNLEYLKLND 96 (104)
Q Consensus 81 ~--~~~~~~~L~~l~l~~ 96 (104)
. .+..+++|++||.+.
T Consensus 132 R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeEEEEecCcceEeehhh
Confidence 1 567899999999764
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=3.1e-06 Score=57.42 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=62.6
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
+..+.+++.+++..|.+. .+. ..+..+++|+.|++++|.+ ... ..+..+..|+.|++.+|.+.... .+.
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N~I--~~i--~~l~~l~~L~~L~l~~N~i~~~~-----~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFNKI--TKL--EGLSTLTLLKELNLSGNLISDIS-----GLE 159 (414)
T ss_pred cccccceeeeeccccchh-hcc-cchhhhhcchheecccccc--ccc--cchhhccchhhheeccCcchhcc-----CCc
Confidence 566788888999999888 443 3367788899999999988 222 23445566888889988888554 566
Q ss_pred CCCCCcEEEcCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLH 100 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~ 100 (104)
.+..|+.+++++|.+.
T Consensus 160 ~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV 175 (414)
T ss_pred cchhhhcccCCcchhh
Confidence 6888888888888764
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.00 E-value=2.9e-05 Score=56.40 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=19.1
Q ss_pred CccEEeccCCcCCcccccccc-ccCCCCCCcEEEcCCCCCCC
Q 040978 61 SLNNLYLSSNNFTETVTITTQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 61 ~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
+|+.|++++|.+.. + | .+ ..+|+.|++++|.+++
T Consensus 263 ~L~~L~Ls~N~L~~-L----P~~l--~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKISC-L----PENL--PEELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECcCCccCc-c----cccc--CCCCcEEECCCCcccc
Confidence 45666666666552 3 3 22 2366677777766553
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=2.1e-07 Score=66.53 Aligned_cols=83 Identities=31% Similarity=0.318 Sum_probs=41.7
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhh-cCCCCCccEEeccCCcCCccccccccccC
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQS-MGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
.-++.++.|++++|.+.+ + ..+..+++|++||++.|.+ ..+|.- ... .+|+.|.+.+|.++... ++.
T Consensus 184 qll~ale~LnLshNk~~~-v--~~Lr~l~~LkhLDlsyN~L---~~vp~l~~~g-c~L~~L~lrnN~l~tL~-----gie 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-V--DNLRRLPKLKHLDLSYNCL---RHVPQLSMVG-CKLQLLNLRNNALTTLR-----GIE 251 (1096)
T ss_pred HHHHHhhhhccchhhhhh-h--HHHHhcccccccccccchh---ccccccchhh-hhheeeeecccHHHhhh-----hHH
Confidence 334555666666666552 2 3455555666666666655 333331 111 12555555555555322 445
Q ss_pred CCCCCcEEEcCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLH 100 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~ 100 (104)
++++|+.||++.|-+.
T Consensus 252 ~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhhhccchhHhhhh
Confidence 5555555555555443
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.90 E-value=5.6e-05 Score=54.99 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=56.0
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
++++.|++++|.+. .+| ..+. .+|+.|++++|++ ..+|..+. .+|+.|++++|.+. .+ | .+. .
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP-~~l~--~nL~~L~Ls~N~L---tsLP~~l~--~~L~~L~Ls~N~L~-~L----P~~l~--s 262 (754)
T PRK15370 199 EQITTLILDNNELK-SLP-ENLQ--GNIKTLYANSNQL---TSIPATLP--DTIQEMELSINRIT-EL----PERLP--S 262 (754)
T ss_pred cCCcEEEecCCCCC-cCC-hhhc--cCCCEEECCCCcc---ccCChhhh--ccccEEECcCCccC-cC----ChhHh--C
Confidence 46888888888888 566 4432 4788999998888 34555432 46888999999887 44 5 432 5
Q ss_pred CCcEEEcCCCCCCC
Q 040978 88 NLEYLKLNDSPLHI 101 (104)
Q Consensus 88 ~L~~l~l~~n~~~~ 101 (104)
+|+.|++++|.++.
T Consensus 263 ~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 263 ALQSLDLFHNKISC 276 (754)
T ss_pred CCCEEECcCCccCc
Confidence 78999999998774
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.89 E-value=5.2e-05 Score=55.31 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=8.4
Q ss_pred CCccEEeccCCcCCc
Q 040978 60 PSLNNLYLSSNNFTE 74 (104)
Q Consensus 60 ~~L~~l~l~~n~~~~ 74 (104)
++|+.|++++|.+..
T Consensus 302 ~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 302 PGLQELSVSDNQLAS 316 (788)
T ss_pred cccceeECCCCcccc
Confidence 345566666665553
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=1.1e-06 Score=51.41 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=45.7
Q ss_pred CCCEEECCCCCCCCccccCccC-CCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYS-GLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
.|...++++|.+. ..| ..|. .++.++.+++++|.+ .++|..+..++.|+.++++.|.+... | .+..+.
T Consensus 54 el~~i~ls~N~fk-~fp-~kft~kf~t~t~lNl~~nei---sdvPeE~Aam~aLr~lNl~~N~l~~~-----p~vi~~L~ 123 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFP-KKFTIKFPTATTLNLANNEI---SDVPEELAAMPALRSLNLRFNPLNAE-----PRVIAPLI 123 (177)
T ss_pred eEEEEecccchhh-hCC-HHHhhccchhhhhhcchhhh---hhchHHHhhhHHhhhcccccCccccc-----hHHHHHHH
Confidence 3445566666666 344 3333 334666677777766 45666666667777777777766632 3 344455
Q ss_pred CCcEEEcCCCC
Q 040978 88 NLEYLKLNDSP 98 (104)
Q Consensus 88 ~L~~l~l~~n~ 98 (104)
++..|+..+|.
T Consensus 124 ~l~~Lds~~na 134 (177)
T KOG4579|consen 124 KLDMLDSPENA 134 (177)
T ss_pred hHHHhcCCCCc
Confidence 55555555543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.85 E-value=6.5e-06 Score=55.29 Aligned_cols=82 Identities=33% Similarity=0.445 Sum_probs=37.2
Q ss_pred CCCCEEECCCCCCCCccccCccCCCC-CCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLR-KLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 87 (104)
+.++.+++.+|.+. .++ ....... +|+.+++++|.+ ...+.....++.|+.|+++.|++.... +.....+
T Consensus 116 ~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSFNDLSDLP----KLLSNLS 186 (394)
T ss_pred cceeEEecCCcccc-cCc-cccccchhhcccccccccch---hhhhhhhhccccccccccCCchhhhhh----hhhhhhh
Confidence 34555555555555 333 2223332 455555555555 233333444555555555555555222 1222444
Q ss_pred CCcEEEcCCCCC
Q 040978 88 NLEYLKLNDSPL 99 (104)
Q Consensus 88 ~L~~l~l~~n~~ 99 (104)
.|+.+++++|.+
T Consensus 187 ~L~~L~ls~N~i 198 (394)
T COG4886 187 NLNNLDLSGNKI 198 (394)
T ss_pred hhhheeccCCcc
Confidence 555555555544
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.80 E-value=1.9e-05 Score=53.06 Aligned_cols=87 Identities=32% Similarity=0.411 Sum_probs=67.3
Q ss_pred cccCCCC-CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 3 AEFNSFN-NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 3 ~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
+....+. +|+.|++++|.+. ..+ ..+..++.|+.|+++.|.+ ...+...+..+.|+.+++++|.+.... +
T Consensus 133 ~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~~~L~~L~ls~N~i~~l~----~ 203 (394)
T COG4886 133 PLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFNDL---SDLPKLLSNLSNLNNLDLSGNKISDLP----P 203 (394)
T ss_pred cccccchhhcccccccccchh-hhh-hhhhccccccccccCCchh---hhhhhhhhhhhhhhheeccCCccccCc----h
Confidence 3344453 8999999999998 665 5678899999999999999 555555557888999999999999443 1
Q ss_pred ccCCCCCCcEEEcCCCC
Q 040978 82 ELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~ 98 (104)
.......|..+.+++|.
T Consensus 204 ~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 204 EIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhcCCc
Confidence 44566668888888884
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.1e-06 Score=55.43 Aligned_cols=87 Identities=29% Similarity=0.370 Sum_probs=39.5
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhh-hhcCCCCCccEEeccCCcCCcccccccc-ccC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLL-QSMGSFPSLNNLYLSSNNFTETVTITTQ-ELH 84 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~ 84 (104)
.+++|+.|+++.|.+.-...+..-..+++++.|.++.|++ ++..- .....+|+++.|++..|...... . ...
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~----~~~~~ 243 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL--SWKDVQWILLTFPSLEVLYLEANEIILIK----ATSTK 243 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCC--CHHHHHHHHHhCCcHHHhhhhccccccee----cchhh
Confidence 3555556666655554221101112345566666666666 33222 22334555555555555322111 1 233
Q ss_pred CCCCCcEEEcCCCCC
Q 040978 85 NFTNLEYLKLNDSPL 99 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~ 99 (104)
.++.|+.|++++|.+
T Consensus 244 i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNL 258 (505)
T ss_pred hhhHHhhccccCCcc
Confidence 444555555555543
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.75 E-value=6.8e-07 Score=62.34 Aligned_cols=93 Identities=24% Similarity=0.316 Sum_probs=54.9
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccc---
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVT--- 77 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--- 77 (104)
+|+.++.+..|+++|++.|.++ ..| ..++.++ |+.|-+++|++ ..+|..++..++|..++.+.|.+.....
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp-~~lC~lp-Lkvli~sNNkl---~~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLP-DGLCDLP-LKVLIVSNNKL---TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCC-hhhhcCc-ceeEEEecCcc---ccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 3566677777777777777777 666 6666665 66666677666 4445555545555555555555542210
Q ss_pred ---c------------ccc-ccCCCCCCcEEEcCCCCCC
Q 040978 78 ---I------------TTQ-ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 78 ---~------------~~~-~~~~~~~L~~l~l~~n~~~ 100 (104)
+ .+| .+. .-.|..||++.|+++
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee
Confidence 0 113 333 445667888887765
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.1e-06 Score=63.08 Aligned_cols=86 Identities=29% Similarity=0.407 Sum_probs=65.6
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCc-cCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQG-YSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
.+..|+.|++||+++|.+. .+| .. ..++. |+.|.+++|-+ ..+ ..+.++.+|+.|+++.|-+.+.. .
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~-~vp-~l~~~gc~-L~~L~lrnN~l---~tL-~gie~LksL~~LDlsyNll~~hs----eL 272 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLR-HVP-QLSMVGCK-LQLLNLRNNAL---TTL-RGIENLKSLYGLDLSYNLLSEHS----EL 272 (1096)
T ss_pred HHHhcccccccccccchhc-ccc-ccchhhhh-heeeeecccHH---Hhh-hhHHhhhhhhccchhHhhhhcch----hh
Confidence 4677999999999999998 555 21 22333 99999999988 333 33557889999999999887543 3
Q ss_pred -ccCCCCCCcEEEcCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~ 100 (104)
-++.+..|+.|.+.+|++.
T Consensus 273 ~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 273 EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHHHHHHHHHHhhcCCccc
Confidence 4567788999999999863
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=3.4e-05 Score=49.10 Aligned_cols=66 Identities=32% Similarity=0.392 Sum_probs=27.7
Q ss_pred cCCCCCCCEEeCCCC--cccCCchhhhhcCCCCCccEEeccCCcCCccccccccccCCCCCCcEEEcCCCCC
Q 040978 30 YSGLRKLKSLDLSRV--GVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 30 ~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 99 (104)
+..++.|+.|.++.| ++ ...++-....+|+|+++++++|+++... .++.+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~--~~~l~vl~e~~P~l~~l~ls~Nki~~ls--tl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV--SGGLEVLAEKAPNLKVLNLSGNKIKDLS--TLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccc--cccceehhhhCCceeEEeecCCcccccc--ccchhhhhcchhhhhcccCCc
Confidence 444455555555555 22 2222222223355555555555554221 001333444444555544443
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=4.1e-05 Score=55.27 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc----
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ---- 81 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~---- 81 (104)
.++++|..||+++++++. + .+++.+.+|+.|.+.+=.+. +...-..+.++.+|+.||++........ .++.
T Consensus 170 ~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYle 244 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN-L--SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLE 244 (699)
T ss_pred hccCccceeecCCCCccC-c--HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCCeeeccccccccch-HHHHHHHH
Confidence 456777777777777773 2 45666777777766665552 1122234557888999999877655321 0001
Q ss_pred ccCCCCCCcEEEcCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~ 101 (104)
.-..+++||.||.+++.+..
T Consensus 245 c~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCccccEEecCCcchhH
Confidence 22458899999998877654
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=4.3e-05 Score=48.65 Aligned_cols=89 Identities=22% Similarity=0.224 Sum_probs=60.3
Q ss_pred cccCCCCCCCEEECCCC--CCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 3 AEFNSFNNLELLDMSFN--EINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
..|..+++|+.|.++.| ++...++ ...-.+++|++++++.|++++-..+ .....+.+|..|++..|.....- . -
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~-d-y 134 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTNLD-D-Y 134 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccccc-c-H
Confidence 35677899999999999 5554444 3445569999999999998210111 23445677888999988877532 0 0
Q ss_pred c--ccCCCCCCcEEEcC
Q 040978 81 Q--ELHNFTNLEYLKLN 95 (104)
Q Consensus 81 ~--~~~~~~~L~~l~l~ 95 (104)
. .|.-+++|++++-.
T Consensus 135 re~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHHHhhhhcccccc
Confidence 1 56677888877643
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.53 E-value=1.4e-05 Score=52.88 Aligned_cols=95 Identities=24% Similarity=0.348 Sum_probs=52.7
Q ss_pred ccCCCCCCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCCch--hhhhcC-CCCCccEEeccCCcCCccc
Q 040978 4 EFNSFNNLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSK--LLQSMG-SFPSLNNLYLSSNNFTETV 76 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~-~l~~L~~l~l~~n~~~~~~ 76 (104)
.|..|++|++||+..|.++.. +. ..++.+++|+.++++.|.+++.+. +...+. ..|+|+.+.+.+|.++...
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 455677777777777766622 22 345566677777777777732111 112222 2467777777777776321
Q ss_pred ccccc-ccCCCCCCcEEEcCCCCC
Q 040978 77 TITTQ-ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 77 ~~~~~-~~~~~~~L~~l~l~~n~~ 99 (104)
--.+. .....+.|..|++.+|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 00001 334466777777777766
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=2.8e-05 Score=52.87 Aligned_cols=84 Identities=27% Similarity=0.329 Sum_probs=65.1
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccCCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELHNFT 87 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 87 (104)
+..++.+.+..|.+.. .- ..+..+.++..+++.+|.+ ......+..+++|++++++.|.+.... .+..++
T Consensus 71 l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i---~~i~~~l~~~~~L~~L~ls~N~I~~i~-----~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKI---EKIENLLSSLVNLQVLDLSFNKITKLE-----GLSTLT 140 (414)
T ss_pred hHhHHhhccchhhhhh-hh-cccccccceeeeeccccch---hhcccchhhhhcchheecccccccccc-----chhhcc
Confidence 4556666777788773 22 4577889999999999998 333333667899999999999999665 667777
Q ss_pred CCcEEEcCCCCCCC
Q 040978 88 NLEYLKLNDSPLHI 101 (104)
Q Consensus 88 ~L~~l~l~~n~~~~ 101 (104)
.|+.|++.+|.++.
T Consensus 141 ~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 141 LLKELNLSGNLISD 154 (414)
T ss_pred chhhheeccCcchh
Confidence 89999999998864
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.48 E-value=5.5e-05 Score=55.92 Aligned_cols=84 Identities=29% Similarity=0.300 Sum_probs=67.2
Q ss_pred CCCCCCEEECCCCC--CCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 7 SFNNLELLDMSFNE--INNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 7 ~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
.++.|+.|-+.+|. +. ..+...|..++.|+.||+++|.- ...+|..++.+-+|+.|++++..+. .. | .+
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~-~L----P~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS-HL----PSGL 614 (889)
T ss_pred CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc-cc----chHH
Confidence 35567788888875 44 34424578899999999998754 4788999999999999999999998 55 7 99
Q ss_pred CCCCCCcEEEcCCCC
Q 040978 84 HNFTNLEYLKLNDSP 98 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~ 98 (104)
+.++.|.+|++..+.
T Consensus 615 ~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTG 629 (889)
T ss_pred HHHHhhheecccccc
Confidence 999999999988765
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=7e-05 Score=51.06 Aligned_cols=88 Identities=25% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCCCCCCEEECCCCCCCCcccc-CccCCCCCCCEEeCCCCcccCCchhhh-hcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 6 NSFNNLELLDMSFNEINNLVVP-QGYSGLRKLKSLDLSRVGVRDGSKLLQ-SMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
..|++++.||++.|-+..+.+. +-+..+++|+.|+++.|++ ...... .-..+++++.|.+++|.++ |++|. .
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl--~~~~~s~~~~~l~~lK~L~l~~CGls---~k~V~~~ 217 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL--SNFISSNTTLLLSHLKQLVLNSCGLS---WKDVQWI 217 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc--cCCccccchhhhhhhheEEeccCCCC---HHHHHHH
Confidence 4466777777777766543221 2234567777777777766 211111 1113466777777777766 22234 5
Q ss_pred cCCCCCCcEEEcCCCC
Q 040978 83 LHNFTNLEYLKLNDSP 98 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~ 98 (104)
...+++|+.|++..|.
T Consensus 218 ~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANE 233 (505)
T ss_pred HHhCCcHHHhhhhccc
Confidence 6678888888888874
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=5.2e-06 Score=48.65 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=51.7
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
.+++.++.+++++|.+. .+| ..+..++.|+.++++.|.+ ...|.-+..+.++..|+..+|...
T Consensus 74 ~kf~t~t~lNl~~neis-dvP-eE~Aam~aLr~lNl~~N~l---~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 74 IKFPTATTLNLANNEIS-DVP-EELAAMPALRSLNLRFNPL---NAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hccchhhhhhcchhhhh-hch-HHHhhhHHhhhcccccCcc---ccchHHHHHHHhHHHhcCCCCccc
Confidence 34668899999999999 788 7799999999999999998 555666666777888888777765
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=0.00014 Score=52.61 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccCCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELHNFT 87 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 87 (104)
+|+|+.|.+++-.+....-...+.++++|..||++++++ + .. ...+.+.+|+.|.+.+=.+.... .+..+..++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI--~-nl-~GIS~LknLq~L~mrnLe~e~~~--~l~~LF~L~ 220 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI--S-NL-SGISRLKNLQVLSMRNLEFESYQ--DLIDLFNLK 220 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc--c-Cc-HHHhccccHHHHhccCCCCCchh--hHHHHhccc
Confidence 455555555544433111102334455555555555555 1 11 22344455555554443333211 000445677
Q ss_pred CCcEEEcCCCC
Q 040978 88 NLEYLKLNDSP 98 (104)
Q Consensus 88 ~L~~l~l~~n~ 98 (104)
+|++||++...
T Consensus 221 ~L~vLDIS~~~ 231 (699)
T KOG3665|consen 221 KLRVLDISRDK 231 (699)
T ss_pred CCCeeeccccc
Confidence 77777777643
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.97 E-value=0.00042 Score=46.11 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=62.3
Q ss_pred ccCCCCCCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCCch----hhhhcCCCCCccEEeccCCcCCcc
Q 040978 4 EFNSFNNLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSK----LLQSMGSFPSLNNLYLSSNNFTET 75 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~ 75 (104)
.|...+.|+.+.++.|.|... .. ..+..+++|+.|+++.|.+ +.. +...+..+++|+.+++++|.+...
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~-eal~~~~~LevLdl~DNtf--t~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALA-EALEHCPHLEVLDLRDNTF--TLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHH-HHHHhCCcceeeecccchh--hhHHHHHHHHHhcccchheeecccccccccc
Confidence 345567788888888876621 22 3467788888888888887 332 234566677888888888888643
Q ss_pred cccccc-cc-CCCCCCcEEEcCCCCCCC
Q 040978 76 VTITTQ-EL-HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 76 ~~~~~~-~~-~~~~~L~~l~l~~n~~~~ 101 (104)
-...+. .+ ...++|+++.+.+|.++.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHH
Confidence 100001 22 357888888888887753
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=4.1e-05 Score=49.76 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=39.6
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchh-hhhcCCCCCccEEeccCCcCCcc
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKL-LQSMGSFPSLNNLYLSSNNFTET 75 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~ 75 (104)
.+|+.|++|.++-|.|+.. ..+..|..|+.|+++.|.+ .... ...+.++++|+.|-+..|...+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I--~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCI--ESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhccc--ccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3566777777777777633 2355666677777777766 2211 12456677777777777766644
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00034 Score=46.07 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=6.8
Q ss_pred CCCCCCcEEEcCCC
Q 040978 84 HNFTNLEYLKLNDS 97 (104)
Q Consensus 84 ~~~~~L~~l~l~~n 97 (104)
..++.++.++++.|
T Consensus 143 ~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 143 DDLPKVTELHMSDN 156 (418)
T ss_pred hcchhhhhhhhccc
Confidence 34444455555554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=4.8e-05 Score=49.49 Aligned_cols=84 Identities=23% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc--ccCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ--ELHN 85 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~ 85 (104)
+.+.+.|+.-+|.+.+. +.+..++.|+.|.++-|.+ ++ + ..+..|.+|+.|++..|.+.+.- . .+.+
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkI--ss-L-~pl~rCtrLkElYLRkN~I~sld----EL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKI--SS-L-APLQRCTRLKELYLRKNCIESLD----ELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeecccc--cc-c-hhHHHHHHHHHHHHHhcccccHH----HHHHHhc
Confidence 44566777778887733 3456788999999999999 33 2 44778899999999999998654 3 6789
Q ss_pred CCCCcEEEcCCCCCCCC
Q 040978 86 FTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~~~ 102 (104)
+++|+.|-+..|+=.|.
T Consensus 87 lpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGE 103 (388)
T ss_pred CchhhhHhhccCCcccc
Confidence 99999999999987665
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.54 E-value=0.013 Score=33.11 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=22.0
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEecc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLS 68 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~ 68 (104)
|.++.+|+.+.+.. .+. .++...|.++.+++.+.+..+ + .......|..+..++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~--~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-L--TSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-T--SCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-c--cccceeeeeccccccccccc
Confidence 44555566655543 233 222244555555555555443 3 12222334444455555554
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.43 E-value=0.0015 Score=25.86 Aligned_cols=15 Identities=40% Similarity=0.518 Sum_probs=8.5
Q ss_pred CCEEECCCCCCCCccc
Q 040978 11 LELLDMSFNEINNLVV 26 (104)
Q Consensus 11 L~~L~l~~n~~~~~~~ 26 (104)
|++|++++|.++ .+|
T Consensus 2 L~~Ldls~n~l~-~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIP 16 (22)
T ss_dssp ESEEEETSSEES-EEG
T ss_pred ccEEECCCCcCE-eCC
Confidence 555666666555 444
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.37 E-value=0.0037 Score=40.88 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=60.4
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCc----cCCCCCCCEEeCCCCcccCCchhhh--------------hcCCCCCccE
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQG----YSGLRKLKSLDLSRVGVRDGSKLLQ--------------SMGSFPSLNN 64 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~~~~~~--------------~~~~l~~L~~ 64 (104)
+++.+|+.|+.++++.|.+....| .. ++....+.+|.+.+|.+ . .... ....-|.|+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~-e~L~d~is~~t~l~HL~l~NnGl--G-p~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFP-EELGDLISSSTDLVHLKLNNNGL--G-PIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHhcCCcceeeeccccccCcccc-hHHHHHHhcCCCceeEEeecCCC--C-ccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 567889999999999999886554 33 34556789999999887 3 1111 1123366777
Q ss_pred EeccCCcCCccc---cc------------------ccc---------ccCCCCCCcEEEcCCCCCC
Q 040978 65 LYLSSNNFTETV---TI------------------TTQ---------ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 65 l~l~~n~~~~~~---~~------------------~~~---------~~~~~~~L~~l~l~~n~~~ 100 (104)
....+|++.... ++ +-| .+..+.+|++|++++|.++
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 777777664211 00 001 2345678888999888764
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.34 E-value=0.02 Score=32.28 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=49.2
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+.+++.+.+..+ +. .++...|.++..++.+.+.. .+ .......|..+..++.+.+..+ +.... . .
T Consensus 30 ~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~--~~i~~~~F~~~~~l~~i~~~~~-~~~i~----~~~ 99 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NL--KSIGDNAFSNCTNLKNIDIPSN-ITEIG----SSS 99 (129)
T ss_dssp TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEEETTT--BEEH----TTT
T ss_pred hccccccccccccccc-cc-ccceeeeecccccccccccc-cc--cccccccccccccccccccCcc-ccEEc----hhh
Confidence 5677889999999875 55 44436788888899999976 33 2333456777899999999765 44333 3 6
Q ss_pred cCCCCCCcEEEcCC
Q 040978 83 LHNFTNLEYLKLND 96 (104)
Q Consensus 83 ~~~~~~L~~l~l~~ 96 (104)
+..+ .++.+.+..
T Consensus 100 f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 100 FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--T--EEE-TT
T ss_pred hcCC-CceEEEECC
Confidence 7777 888888765
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0051 Score=40.73 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=40.3
Q ss_pred CCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc-CCCCCCcEEEcCCCCCC
Q 040978 33 LRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL-HNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 33 ~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~ 100 (104)
+..++.+++.+|.+++..+....+.++|.|+.|+++.|.+...+ ..+ ....+|+.+-+.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I----~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI----KSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc----ccCcccccceEEEEEcCCCCC
Confidence 35577778888887543445556667788888888888776333 222 34556777766665543
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.42 E-value=0.013 Score=21.66 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=5.3
Q ss_pred CCCEEECCCCCCC
Q 040978 10 NLELLDMSFNEIN 22 (104)
Q Consensus 10 ~L~~L~l~~n~~~ 22 (104)
+|+.|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.0063 Score=40.33 Aligned_cols=57 Identities=28% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCCCCCEEeCCCCc-ccCCchhhhhcCCCCCccEEeccCCcCCcccccccc----ccCCCCCCcEEEcCC
Q 040978 32 GLRKLKSLDLSRVG-VRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ----ELHNFTNLEYLKLND 96 (104)
Q Consensus 32 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~----~~~~~~~L~~l~l~~ 96 (104)
.++++..||++.+. + +..+...|.+++.|+++.+++|.-. . | .+...++|.+|+..+
T Consensus 311 rcp~l~~LDLSD~v~l--~~~~~~~~~kf~~L~~lSlsRCY~i--~----p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVML--KNDCFQEFFKFNYLQHLSLSRCYDI--I----PETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeecccccccc--CchHHHHHHhcchheeeehhhhcCC--C----hHHeeeeccCcceEEEEecc
Confidence 34555555655543 3 2233444555555555555554322 1 1 334555555555443
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.0008 Score=44.38 Aligned_cols=85 Identities=28% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCCEEECCCCCCCCc-cccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCc-CCcccccccc-ccCCC
Q 040978 10 NLELLDMSFNEINNL-VVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNN-FTETVTITTQ-ELHNF 86 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~-~~~~~ 86 (104)
.++++|+++..++.. +. .-+.+|.+|+.+.+.++++ ++.....+..-..|+.++++.+. ++... +. .+..|
T Consensus 186 Rlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~---~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRL--DDPIVNTIAKNSNLVRLNLSMCSGFTENA---LQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHH-HHHHHHHhhhhcccccccc--CcHHHHHHhccccceeeccccccccchhH---HHHHHHhh
Confidence 367777777777621 22 2345667788888888877 55555556666677777777653 43111 12 56677
Q ss_pred CCCcEEEcCCCCCC
Q 040978 87 TNLEYLKLNDSPLH 100 (104)
Q Consensus 87 ~~L~~l~l~~n~~~ 100 (104)
+.|..|+++.+...
T Consensus 260 s~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 260 SRLDELNLSWCFLF 273 (419)
T ss_pred hhHhhcCchHhhcc
Confidence 77777777766543
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.29 E-value=0.028 Score=36.99 Aligned_cols=91 Identities=25% Similarity=0.330 Sum_probs=56.7
Q ss_pred cCCCCCCCEEECCCCCCCCccc---cCccCCCCCCCEEeCCCCccc-CCchhh-------hhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVV---PQGYSGLRKLKSLDLSRVGVR-DGSKLL-------QSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~~~~~-~~~~~~-------~~~~~l~~L~~l~l~~n~~~ 73 (104)
+..+..+..+++++|.+..... ...+..-.+|+..+++.-... +..+++ ..+..||+++..++++|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3446788899999999874321 023344455666655542210 012222 24456789999999999887
Q ss_pred cccccccc-----ccCCCCCCcEEEcCCCCC
Q 040978 74 ETVTITTQ-----ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 74 ~~~~~~~~-----~~~~~~~L~~l~l~~n~~ 99 (104)
... | .++.-..|.+|.+++|.+
T Consensus 106 ~~~----~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEF----PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccc----chHHHHHHhcCCCceeEEeecCCC
Confidence 554 4 345667888898888864
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.50 E-value=0.32 Score=33.75 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=36.6
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSN 70 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n 70 (104)
+..+.++..|++++|.+. .+| . -..+|+.|.+.+|.- -...|+.+ .++|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~n--LtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNN--LTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCC--cccCCchh--hhhhhheEccCc
Confidence 345678899999999777 455 2 123588888887532 14444433 246777888776
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.41 E-value=0.11 Score=21.04 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=8.7
Q ss_pred CCCCEEECCCCCCC
Q 040978 9 NNLELLDMSFNEIN 22 (104)
Q Consensus 9 ~~L~~L~l~~n~~~ 22 (104)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.41 E-value=0.11 Score=21.04 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=8.7
Q ss_pred CCCCEEECCCCCCC
Q 040978 9 NNLELLDMSFNEIN 22 (104)
Q Consensus 9 ~~L~~L~l~~n~~~ 22 (104)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.015 Score=36.23 Aligned_cols=80 Identities=30% Similarity=0.283 Sum_probs=40.2
Q ss_pred CCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcC-CCCCccEEeccCCcCCcccccccc--ccCCCC
Q 040978 11 LELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMG-SFPSLNNLYLSSNNFTETVTITTQ--ELHNFT 87 (104)
Q Consensus 11 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~ 87 (104)
++.+|-++..|...-- ..+..++.++.+.+.+|.-- .....+.++ -.++|+.|++++|.-.... . .+..++
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~-dD~~L~~l~~~~~~L~~L~lsgC~rIT~~----GL~~L~~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYF-DDWCLERLGGLAPSLQDLDLSGCPRITDG----GLACLLKLK 176 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheeccccch-hhHHHHHhcccccchheeeccCCCeechh----HHHHHHHhh
Confidence 4455555555543322 44555666666666666431 111222233 3467777777766532222 2 455666
Q ss_pred CCcEEEcCC
Q 040978 88 NLEYLKLND 96 (104)
Q Consensus 88 ~L~~l~l~~ 96 (104)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666555443
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.61 E-value=0.14 Score=20.26 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=5.1
Q ss_pred CCCEEeCCCCcc
Q 040978 35 KLKSLDLSRVGV 46 (104)
Q Consensus 35 ~L~~l~l~~~~~ 46 (104)
+|+.|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 445555555554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.54 E-value=0.17 Score=34.61 Aligned_cols=89 Identities=33% Similarity=0.254 Sum_probs=50.0
Q ss_pred cCCCCCCCEEECCCC-CCCCccc---cCccCCCCCCCEEeCCCCc-ccCCchhhhhcC-CCCCccEEeccCCc-CCcccc
Q 040978 5 FNSFNNLELLDMSFN-EINNLVV---PQGYSGLRKLKSLDLSRVG-VRDGSKLLQSMG-SFPSLNNLYLSSNN-FTETVT 77 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n-~~~~~~~---~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~-~l~~L~~l~l~~n~-~~~~~~ 77 (104)
...++.|+.|+++++ ......+ ......+++++.++++.+. + +...-..+. .++.|+.+.+.++. +++..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--sd~~l~~l~~~c~~L~~L~l~~c~~lt~~g- 286 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--TDIGLSALASRCPNLETLSLSNCSNLTDEG- 286 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc--CchhHHHHHhhCCCcceEccCCCCccchhH-
Confidence 345777888888763 1110111 0223445677888888776 5 233223332 36788888866666 44321
Q ss_pred cccc-ccCCCCCCcEEEcCCCC
Q 040978 78 ITTQ-ELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 78 ~~~~-~~~~~~~L~~l~l~~n~ 98 (104)
+. ....++.|+.|+++++.
T Consensus 287 --l~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 287 --LVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred --HHHHHHhcCcccEEeeecCc
Confidence 01 34567778888887654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=0.041 Score=34.43 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=42.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCC-CCCCCEEeCCCC-cccCCchhhhhcCCCCCccEEeccCC
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSG-LRKLKSLDLSRV-GVRDGSKLLQSMGSFPSLNNLYLSSN 70 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~l~l~~~-~~~~~~~~~~~~~~l~~L~~l~l~~n 70 (104)
-+..++.++.|.+.+|.--+...-+.+++ .++|+.|+++.| +|| ...-..+..+++|+.|.+.+-
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--DGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec--hhHHHHHHHhhhhHHHHhcCc
Confidence 45677888888888876543322134444 478999999987 673 333344556777777776543
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.08 E-value=0.45 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=9.9
Q ss_pred CCCcEEEcCCCCCC
Q 040978 87 TNLEYLKLNDSPLH 100 (104)
Q Consensus 87 ~~L~~l~l~~n~~~ 100 (104)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777764
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.03 E-value=0.49 Score=19.49 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=9.9
Q ss_pred CCCcEEEcCCCCCC
Q 040978 87 TNLEYLKLNDSPLH 100 (104)
Q Consensus 87 ~~L~~l~l~~n~~~ 100 (104)
.+|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777764
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.60 E-value=0.0045 Score=39.68 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
...+.||++.|.+. ... ..|+-+..+..++++.|.+ ...|..+++...+..++.-.|... .. | .++..+
T Consensus 42 kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~---~~~~~d~~q~~e~~~~~~~~n~~~-~~----p~s~~k~~ 111 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQI---KFLPKDAKQQRETVNAASHKNNHS-QQ----PKSQKKEP 111 (326)
T ss_pred ceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhH---hhChhhHHHHHHHHHHHhhccchh-hC----CccccccC
Confidence 34445566555544 233 3444445555666666555 344555555555555555555444 33 5 666777
Q ss_pred CCcEEEcCCCCC
Q 040978 88 NLEYLKLNDSPL 99 (104)
Q Consensus 88 ~L~~l~l~~n~~ 99 (104)
.++.+++-+|++
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 777776666654
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.34 E-value=0.62 Score=33.40 Aligned_cols=11 Identities=55% Similarity=0.727 Sum_probs=5.3
Q ss_pred CCccEEeccCC
Q 040978 60 PSLNNLYLSSN 70 (104)
Q Consensus 60 ~~L~~l~l~~n 70 (104)
|+|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.45 E-value=2.4 Score=29.59 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=35.9
Q ss_pred cCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCCCcEEEcCCC
Q 040978 30 YSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTNLEYLKLNDS 97 (104)
Q Consensus 30 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L~~l~l~~n 97 (104)
+..+.++..|++++|.+ ..+|. -..+|+.|.+.++.-.... | .+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L---~sLP~---LP~sLtsL~Lsnc~nLtsL----P~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDI---ESLPV---LPNELTEITIENCNNLTTL----PGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCC---cccCC---CCCCCcEEEccCCCCcccC----Cchh--hhhhhheEccCc
Confidence 34467899999999988 44552 1236999999875443233 3 22 246666777666
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.39 E-value=0.96 Score=31.00 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCCCCCCEEECCCCC-CCCccccCccC-CCCCCCEEeCCCCc-ccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 6 NSFNNLELLDMSFNE-INNLVVPQGYS-GLRKLKSLDLSRVG-VRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~-~~~~~~~~~~~-~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
..+.+++.++++++. +++..- ..+. .++.|+.|.+.++. ++ +..+......++.|+.++++.+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence 345777788887777 553322 2222 26778888877665 52 1223334445677888888876653
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.10 E-value=1.4 Score=18.20 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=7.0
Q ss_pred CCCEEECCCCCCC
Q 040978 10 NLELLDMSFNEIN 22 (104)
Q Consensus 10 ~L~~L~l~~n~~~ 22 (104)
+|++|++++|.+.
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.86 E-value=1.7 Score=17.47 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=6.0
Q ss_pred CCCCEEeCCCC
Q 040978 34 RKLKSLDLSRV 44 (104)
Q Consensus 34 ~~L~~l~l~~~ 44 (104)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.39 E-value=2.1 Score=30.89 Aligned_cols=66 Identities=27% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCCCEEECCCCCCCCcccc-CccCCCCCCCEEeCCCC--cccCCchhh-hhcCCCCCccEEeccCCcCCcc
Q 040978 7 SFNNLELLDMSFNEINNLVVP-QGYSGLRKLKSLDLSRV--GVRDGSKLL-QSMGSFPSLNNLYLSSNNFTET 75 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~~--~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~ 75 (104)
+.+.+..+.++.|.+...... .-....+.+..|+|++| .+ +.... ..++ ...|+.|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~--~~~~el~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKI--SSESELDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhh--cchhhhhhhc-CCCHHHeeecCCccccc
Confidence 456777888999987732110 11233578999999998 55 22111 1222 34588899999998754
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=66.66 E-value=4.9 Score=34.40 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=27.6
Q ss_pred eCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccc
Q 040978 40 DLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETV 76 (104)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 76 (104)
||++|+| ...-+..|..+++|+.|+|.+|.+.-..
T Consensus 1 DLSnN~L--stLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKI--STIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcC--CccChHHhccCCCceEEEeeCCcccccc
Confidence 5788999 4444567888999999999999987443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=56.19 E-value=0.099 Score=33.76 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
..+..|+++.|.+. ..| ..+.....+..+++-.|+. ...|.+++..++++.++...+.+.
T Consensus 65 t~~~rl~~sknq~~-~~~-~d~~q~~e~~~~~~~~n~~---~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLP-KDAKQQRETVNAASHKNNH---SQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHhccHhhHh-hCh-hhHHHHHHHHHHHhhccch---hhCCccccccCCcchhhhccCcch
Confidence 34556677777766 666 6666666666666666666 556777777788877777777765
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.99 E-value=12 Score=32.38 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=25.9
Q ss_pred ECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 15 DMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 15 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
||++|.+. .++...|..+.+|+.|+|.+|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 57899999 55547788899999999999876
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=38.39 E-value=19 Score=25.49 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCCCCEEECCCCCCCCcc-ccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCc
Q 040978 7 SFNNLELLDMSFNEINNLV-VPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNN 71 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~ 71 (104)
.+.+|+.+.++.+.--... -...-.++++|+.+++..+....+..+...-.+++.|+.+.++.+.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 4567777777666522111 1011134556666666666541112222333355666666666554
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=29.70 E-value=2.6 Score=29.86 Aligned_cols=14 Identities=43% Similarity=0.482 Sum_probs=6.4
Q ss_pred CCCCCEEeCCCCcc
Q 040978 33 LRKLKSLDLSRVGV 46 (104)
Q Consensus 33 ~~~L~~l~l~~~~~ 46 (104)
.++|+.+++++|.+
T Consensus 114 ~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNL 127 (478)
T ss_pred cccHhHhhcccCCC
Confidence 34444444444444
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.04 E-value=19 Score=14.80 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=6.2
Q ss_pred CCCCCCCEEEC
Q 040978 6 NSFNNLELLDM 16 (104)
Q Consensus 6 ~~~~~L~~L~l 16 (104)
..+++|+.||.
T Consensus 10 ~~LPqL~~LD~ 20 (26)
T smart00446 10 RLLPQLRKLDX 20 (26)
T ss_pred HHCCccceecc
Confidence 44566666654
No 89
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=25.76 E-value=37 Score=13.68 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=6.7
Q ss_pred CCCCCCCEEECCC
Q 040978 6 NSFNNLELLDMSF 18 (104)
Q Consensus 6 ~~~~~L~~L~l~~ 18 (104)
.++.++..|+++.
T Consensus 3 ~~~~~~~~ldls~ 15 (26)
T TIGR02167 3 SGCSSLTSLDVSN 15 (26)
T ss_pred Ccccccccccccc
Confidence 4455555555543
Done!