Query 040978
Match_columns 104
No_of_seqs 115 out of 2341
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 2.8E-16 9.7E-21 111.0 6.7 96 2-104 625-721 (768)
2 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.9E-20 91.8 8.7 91 5-102 50-141 (192)
3 2wfh_A SLIT homolog 2 protein 99.6 7.2E-15 2.4E-19 88.9 9.7 92 2-100 47-139 (193)
4 2v70_A SLIT-2, SLIT homolog 2 99.6 9.4E-15 3.2E-19 89.9 10.4 91 5-102 53-144 (220)
5 2v9t_B SLIT homolog 2 protein 99.6 9E-15 3.1E-19 90.0 10.2 91 4-101 51-142 (220)
6 3g39_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 85.9 10.1 88 8-102 29-117 (170)
7 4fcg_A Uncharacterized protein 99.6 5.6E-15 1.9E-19 95.6 8.5 96 1-104 198-294 (328)
8 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.4E-19 89.8 9.3 93 3-102 75-168 (220)
9 2r9u_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 85.4 9.9 86 9-101 33-119 (174)
10 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 85.5 9.1 92 4-102 47-139 (177)
11 2v9t_B SLIT homolog 2 protein 99.6 3E-14 1E-18 87.6 9.6 92 2-100 73-165 (220)
12 2o6s_A Variable lymphocyte rec 99.6 6.5E-14 2.2E-18 85.1 10.6 89 5-100 48-137 (208)
13 1ogq_A PGIP-2, polygalacturona 99.6 1.6E-15 5.5E-20 97.5 3.5 94 2-102 69-164 (313)
14 3m19_A Variable lymphocyte rec 99.6 6.9E-14 2.4E-18 87.3 10.8 66 5-73 55-120 (251)
15 1w8a_A SLIT protein; signaling 99.6 4.4E-14 1.5E-18 85.2 9.3 89 9-103 29-118 (192)
16 3m19_A Variable lymphocyte rec 99.6 7.8E-14 2.7E-18 87.0 10.8 89 5-100 79-168 (251)
17 1ogq_A PGIP-2, polygalacturona 99.5 3.1E-15 1.1E-19 96.2 4.0 95 2-103 94-190 (313)
18 3rfs_A Internalin B, repeat mo 99.5 8.5E-14 2.9E-18 87.8 10.5 89 5-100 105-194 (272)
19 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 83.8 10.7 93 4-103 71-164 (208)
20 3v47_A TOLL-like receptor 5B a 99.5 5.3E-14 1.8E-18 93.8 9.7 92 5-103 319-411 (455)
21 4g8a_A TOLL-like receptor 4; l 99.5 6.2E-14 2.1E-18 96.1 10.2 92 3-101 70-162 (635)
22 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 85.3 10.4 89 4-100 59-148 (229)
23 3rgz_A Protein brassinosteroid 99.5 2E-14 6.7E-19 101.6 7.5 96 2-104 459-555 (768)
24 3rfs_A Internalin B, repeat mo 99.5 1.4E-13 4.9E-18 86.8 10.8 92 5-103 129-221 (272)
25 3e6j_A Variable lymphocyte rec 99.5 9.3E-14 3.2E-18 85.8 9.6 92 3-102 82-174 (229)
26 2je0_A Acidic leucine-rich nuc 99.5 5.6E-14 1.9E-18 81.4 8.0 92 2-102 35-128 (149)
27 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.5E-18 83.3 9.8 85 9-101 31-116 (193)
28 3v47_A TOLL-like receptor 5B a 99.5 1.6E-13 5.4E-18 91.5 10.4 93 2-101 292-385 (455)
29 4ezg_A Putative uncharacterize 99.5 2.2E-13 7.4E-18 82.3 10.0 91 3-101 82-173 (197)
30 1p9a_G Platelet glycoprotein I 99.5 2.7E-13 9.3E-18 86.4 10.8 92 2-100 93-185 (290)
31 2ifg_A High affinity nerve gro 99.5 1.5E-13 5.3E-18 89.0 9.5 92 1-101 24-117 (347)
32 4g8a_A TOLL-like receptor 4; l 99.5 1.4E-13 4.9E-18 94.3 9.7 92 2-100 487-580 (635)
33 2z66_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 87.4 9.4 90 5-101 146-237 (306)
34 1ozn_A Reticulon 4 receptor; N 99.5 3.5E-13 1.2E-17 85.3 9.8 18 82-99 196-213 (285)
35 3vq2_A TLR4, TOLL-like recepto 99.5 3.4E-13 1.2E-17 92.7 10.2 90 4-100 51-141 (606)
36 1ozn_A Reticulon 4 receptor; N 99.5 4.2E-13 1.4E-17 84.9 9.8 92 3-101 99-191 (285)
37 2o6r_A Variable lymphocyte rec 99.5 1E-12 3.4E-17 78.1 10.7 87 8-101 27-114 (177)
38 2xot_A Amphoterin-induced prot 99.5 3.8E-13 1.3E-17 87.9 9.5 87 7-100 62-149 (361)
39 2o6q_A Variable lymphocyte rec 99.5 8.5E-13 2.9E-17 83.1 10.7 17 83-99 177-193 (270)
40 2ell_A Acidic leucine-rich nuc 99.5 9.8E-14 3.3E-18 81.8 6.0 92 2-101 42-134 (168)
41 4fcg_A Uncharacterized protein 99.5 9E-14 3.1E-18 89.9 6.2 90 6-104 180-270 (328)
42 3t6q_A CD180 antigen; protein- 99.5 5.4E-13 1.8E-17 91.7 10.4 93 2-101 50-143 (606)
43 2o6q_A Variable lymphocyte rec 99.5 1.1E-12 3.8E-17 82.6 10.9 89 4-99 56-145 (270)
44 2z66_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 85.7 8.9 94 2-102 168-263 (306)
45 2z62_A TOLL-like receptor 4, v 99.5 8.1E-13 2.8E-17 83.3 10.2 90 4-100 47-137 (276)
46 2z63_A TOLL-like receptor 4, v 99.5 3.9E-13 1.3E-17 91.6 9.3 94 3-103 439-534 (570)
47 4b8c_D Glucose-repressible alc 99.5 5.1E-14 1.7E-18 99.3 4.7 92 2-103 240-332 (727)
48 2xot_A Amphoterin-induced prot 99.5 6.4E-13 2.2E-17 86.9 9.6 92 3-101 82-177 (361)
49 1dce_A Protein (RAB geranylger 99.4 3.6E-13 1.2E-17 92.8 8.4 89 5-103 459-549 (567)
50 3vq2_A TLR4, TOLL-like recepto 99.4 7.5E-13 2.6E-17 91.0 9.7 94 2-102 73-168 (606)
51 4ezg_A Putative uncharacterize 99.4 3.6E-13 1.2E-17 81.3 6.8 90 2-101 105-195 (197)
52 2id5_A Lingo-1, leucine rich r 99.4 7.4E-13 2.5E-17 88.9 8.9 91 3-100 50-141 (477)
53 3oja_B Anopheles plasmodium-re 99.4 1.6E-12 5.3E-17 89.8 10.3 91 4-101 94-185 (597)
54 2z63_A TOLL-like receptor 4, v 99.4 1.6E-12 5.4E-17 88.6 10.1 90 4-100 47-137 (570)
55 3o6n_A APL1; leucine-rich repe 99.4 2E-12 7E-17 84.9 10.3 91 4-101 88-179 (390)
56 2z81_A CD282 antigen, TOLL-lik 99.4 1E-12 3.5E-17 89.4 8.4 88 4-98 45-134 (549)
57 4eco_A Uncharacterized protein 99.4 4.8E-13 1.7E-17 93.0 6.9 97 1-104 239-347 (636)
58 2z62_A TOLL-like receptor 4, v 99.4 2E-12 6.9E-17 81.4 9.0 92 3-101 70-163 (276)
59 2je0_A Acidic leucine-rich nuc 99.4 1.5E-12 5E-17 75.3 7.8 86 7-101 15-102 (149)
60 1p9a_G Platelet glycoprotein I 99.4 3.8E-12 1.3E-16 81.1 10.3 87 7-101 75-162 (290)
61 4eco_A Uncharacterized protein 99.4 1.9E-13 6.4E-18 95.1 4.5 96 1-104 198-321 (636)
62 3oja_B Anopheles plasmodium-re 99.4 1.4E-12 4.9E-17 90.0 8.8 92 5-103 71-163 (597)
63 3o6n_A APL1; leucine-rich repe 99.4 1.9E-12 6.7E-17 85.0 8.8 91 5-102 65-156 (390)
64 2z81_A CD282 antigen, TOLL-lik 99.4 2.3E-12 7.9E-17 87.6 9.4 86 9-101 26-112 (549)
65 3zyi_A Leucine-rich repeat-con 99.4 2.5E-12 8.7E-17 86.0 9.2 68 3-73 93-160 (452)
66 2id5_A Lingo-1, leucine rich r 99.4 2.5E-12 8.5E-17 86.4 9.1 93 2-101 73-166 (477)
67 3j0a_A TOLL-like receptor 5; m 99.4 1.7E-12 5.9E-17 92.6 8.6 92 3-101 67-162 (844)
68 1ziw_A TOLL-like receptor 3; i 99.4 2E-12 6.8E-17 90.0 8.5 90 5-101 69-159 (680)
69 3zyj_A Leucine-rich repeat-con 99.4 3.3E-12 1.1E-16 85.2 9.0 67 4-73 83-149 (440)
70 3t6q_A CD180 antigen; protein- 99.4 4.1E-12 1.4E-16 87.3 9.4 93 2-101 74-167 (606)
71 3zyj_A Leucine-rich repeat-con 99.4 3.4E-12 1.2E-16 85.2 8.7 89 4-101 180-269 (440)
72 1ziw_A TOLL-like receptor 3; i 99.4 2.9E-12 1E-16 89.1 8.6 92 4-102 44-136 (680)
73 3zyi_A Leucine-rich repeat-con 99.4 9.2E-12 3.2E-16 83.3 10.7 88 5-101 192-280 (452)
74 4b8c_D Glucose-repressible alc 99.4 1.9E-12 6.5E-17 91.4 7.2 92 2-104 217-309 (727)
75 2z7x_B TOLL-like receptor 1, v 99.3 1.1E-11 3.8E-16 83.9 10.6 91 6-103 321-415 (520)
76 3j0a_A TOLL-like receptor 5; m 99.3 4.5E-12 1.5E-16 90.5 9.1 95 2-102 41-138 (844)
77 2z80_A TOLL-like receptor 2, v 99.3 8.8E-12 3E-16 81.0 9.1 84 10-100 53-137 (353)
78 2ell_A Acidic leucine-rich nuc 99.3 2.6E-12 9E-17 75.6 5.9 86 7-101 22-109 (168)
79 2z7x_B TOLL-like receptor 1, v 99.3 8.5E-12 2.9E-16 84.5 9.1 87 4-100 40-128 (520)
80 3g39_A Variable lymphocyte rec 99.3 2.1E-11 7E-16 72.3 9.6 83 10-102 10-93 (170)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 6.6E-12 2.3E-16 85.9 8.2 89 3-101 70-160 (562)
82 4ecn_A Leucine-rich repeat pro 99.3 7.8E-13 2.7E-17 94.9 3.6 70 2-74 441-530 (876)
83 1wwl_A Monocyte differentiatio 99.3 5.7E-12 2E-16 80.8 6.8 62 9-73 149-214 (312)
84 1xku_A Decorin; proteoglycan, 99.3 2.5E-11 8.7E-16 78.1 9.8 84 10-101 193-277 (330)
85 2z80_A TOLL-like receptor 2, v 99.3 1.3E-11 4.4E-16 80.2 8.5 87 4-97 71-159 (353)
86 1wwl_A Monocyte differentiatio 99.3 1.5E-12 5.2E-17 83.5 4.0 85 7-99 93-185 (312)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.3E-11 1.1E-15 82.5 10.5 90 6-102 350-443 (562)
88 2r9u_A Variable lymphocyte rec 99.3 4E-11 1.4E-15 71.3 9.6 82 11-102 14-96 (174)
89 2ft3_A Biglycan; proteoglycan, 99.3 1.7E-11 5.8E-16 79.0 8.6 87 4-100 73-160 (332)
90 1xku_A Decorin; proteoglycan, 99.3 2.4E-11 8.4E-16 78.2 9.3 89 3-99 210-305 (330)
91 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-11 4.4E-16 73.3 6.9 82 10-100 43-126 (176)
92 2xwt_C Thyrotropin receptor; s 99.3 4.3E-12 1.5E-16 78.5 4.9 85 10-101 32-119 (239)
93 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-11 5.2E-16 73.0 6.9 86 4-100 14-101 (176)
94 4ecn_A Leucine-rich repeat pro 99.3 8.6E-12 2.9E-16 89.6 6.7 95 2-104 482-589 (876)
95 2ft3_A Biglycan; proteoglycan, 99.3 2.3E-11 8E-16 78.4 7.6 65 5-73 213-277 (332)
96 2xwt_C Thyrotropin receptor; s 99.2 4.6E-12 1.6E-16 78.4 4.0 66 4-72 50-117 (239)
97 4glp_A Monocyte differentiatio 99.2 1.9E-11 6.6E-16 78.2 6.9 40 57-100 221-264 (310)
98 4fmz_A Internalin; leucine ric 99.2 5E-11 1.7E-15 77.0 8.6 87 5-102 239-326 (347)
99 4fmz_A Internalin; leucine ric 99.2 7.4E-11 2.5E-15 76.2 9.1 87 4-100 260-346 (347)
100 1xeu_A Internalin C; cellular 99.2 1.4E-10 4.9E-15 72.9 10.2 41 56-101 124-164 (263)
101 1h6t_A Internalin B; cell adhe 99.2 1.1E-10 3.9E-15 74.3 9.8 62 5-73 64-125 (291)
102 1xeu_A Internalin C; cellular 99.2 9.2E-11 3.1E-15 73.8 9.2 85 4-101 58-142 (263)
103 1h6u_A Internalin H; cell adhe 99.2 1.3E-10 4.3E-15 74.6 9.9 84 5-100 59-142 (308)
104 2ifg_A High affinity nerve gro 99.2 9E-11 3.1E-15 76.0 9.1 82 12-102 11-95 (347)
105 1h6t_A Internalin B; cell adhe 99.2 1.3E-10 4.5E-15 74.0 9.7 62 5-73 86-147 (291)
106 1dce_A Protein (RAB geranylger 99.2 7E-11 2.4E-15 81.5 8.9 83 10-103 442-524 (567)
107 1h6u_A Internalin H; cell adhe 99.2 1.7E-10 5.7E-15 74.0 9.7 17 6-22 82-98 (308)
108 4glp_A Monocyte differentiatio 99.2 4.2E-11 1.4E-15 76.7 6.5 85 6-101 221-308 (310)
109 3oja_A Leucine-rich immune mol 99.2 4.5E-11 1.5E-15 81.0 6.2 17 6-22 141-157 (487)
110 1m9s_A Internalin B; cell inva 99.2 2.4E-10 8.2E-15 79.4 9.9 40 56-100 149-188 (605)
111 3o53_A Protein LRIM1, AGAP0063 99.1 2.2E-10 7.4E-15 73.6 8.2 83 7-100 167-250 (317)
112 3oja_A Leucine-rich immune mol 99.1 1.1E-10 3.6E-15 79.2 7.0 86 8-101 119-205 (487)
113 1o6v_A Internalin A; bacterial 99.1 4.7E-10 1.6E-14 75.3 9.6 39 58-101 329-367 (466)
114 1m9s_A Internalin B; cell inva 99.1 3.2E-10 1.1E-14 78.8 8.7 86 5-102 83-168 (605)
115 2ast_B S-phase kinase-associat 99.1 5.2E-11 1.8E-15 76.6 4.1 87 7-100 91-182 (336)
116 2ca6_A RAN GTPase-activating p 99.1 6.1E-11 2.1E-15 77.8 3.8 92 4-102 211-318 (386)
117 1o6v_A Internalin A; bacterial 99.1 1.5E-09 5.1E-14 72.9 9.7 38 6-46 240-277 (466)
118 3o53_A Protein LRIM1, AGAP0063 99.1 4.5E-10 1.5E-14 72.1 6.8 86 6-100 141-227 (317)
119 4ay9_X Follicle-stimulating ho 99.0 5.4E-10 1.8E-14 72.7 5.9 86 9-101 30-118 (350)
120 3bz5_A Internalin-J, INLJ; leu 99.0 3.4E-09 1.2E-13 71.3 9.5 82 5-101 60-141 (457)
121 2ast_B S-phase kinase-associat 99.0 6.1E-10 2.1E-14 71.6 5.2 85 9-101 70-157 (336)
122 2ca6_A RAN GTPase-activating p 99.0 2.2E-10 7.6E-15 75.2 3.1 95 4-101 182-288 (386)
123 1ds9_A Outer arm dynein; leuci 99.0 8.6E-13 2.9E-17 79.7 -7.8 88 4-101 43-154 (198)
124 1ds9_A Outer arm dynein; leuci 99.0 4.7E-13 1.6E-17 80.9 -9.2 86 5-101 89-186 (198)
125 3bz5_A Internalin-J, INLJ; leu 99.0 2E-09 6.7E-14 72.5 7.2 84 4-101 37-120 (457)
126 3cvr_A Invasion plasmid antige 98.9 1.3E-09 4.5E-14 75.3 5.8 80 8-103 159-246 (571)
127 3goz_A Leucine-rich repeat-con 98.9 2.7E-10 9.3E-15 74.3 1.6 88 6-100 47-151 (362)
128 3g06_A SSPH2 (leucine-rich rep 98.8 5.9E-09 2E-13 72.7 6.4 78 9-102 221-299 (622)
129 3goz_A Leucine-rich repeat-con 98.8 3.5E-10 1.2E-14 73.8 0.3 85 9-100 22-122 (362)
130 1jl5_A Outer protein YOPM; leu 98.8 4.2E-08 1.4E-12 66.0 9.8 60 5-73 149-208 (454)
131 4ay9_X Follicle-stimulating ho 98.8 7.7E-09 2.6E-13 67.2 5.4 71 3-75 48-119 (350)
132 3cvr_A Invasion plasmid antige 98.8 4.8E-08 1.6E-12 67.6 9.5 55 8-73 99-153 (571)
133 1z7x_W Ribonuclease inhibitor; 98.8 2.7E-09 9.1E-14 71.2 2.6 85 10-101 314-412 (461)
134 3sb4_A Hypothetical leucine ri 98.8 4E-08 1.4E-12 63.3 7.9 84 8-100 225-310 (329)
135 1jl5_A Outer protein YOPM; leu 98.8 1.5E-08 5.1E-13 68.2 5.8 78 9-101 317-410 (454)
136 1z7x_W Ribonuclease inhibitor; 98.7 3.8E-09 1.3E-13 70.4 1.9 69 4-73 51-126 (461)
137 3e4g_A ATP synthase subunit S, 98.7 1.2E-08 4.2E-13 60.9 3.6 84 8-98 60-150 (176)
138 3sb4_A Hypothetical leucine ri 98.6 1.4E-07 4.7E-12 60.8 7.5 83 3-94 244-328 (329)
139 3rw6_A Nuclear RNA export fact 98.6 7.4E-08 2.5E-12 61.0 5.7 83 7-93 168-257 (267)
140 3un9_A NLR family member X1; l 98.6 1.7E-08 5.8E-13 66.5 2.8 92 7-101 153-253 (372)
141 3rw6_A Nuclear RNA export fact 98.6 7.8E-08 2.7E-12 60.9 5.7 66 31-103 167-236 (267)
142 3g06_A SSPH2 (leucine-rich rep 98.6 2.4E-07 8.3E-12 64.7 8.6 14 9-22 81-94 (622)
143 3ogk_B Coronatine-insensitive 98.5 8.8E-09 3E-13 70.5 0.0 92 5-102 432-528 (592)
144 1io0_A Tropomodulin; LRR prote 98.5 9.3E-08 3.2E-12 57.2 3.8 93 5-100 32-136 (185)
145 1io0_A Tropomodulin; LRR prote 98.5 3.7E-08 1.3E-12 59.0 1.5 95 3-100 59-164 (185)
146 3un9_A NLR family member X1; l 98.4 1.4E-07 4.8E-12 62.1 3.0 88 10-100 127-224 (372)
147 2p1m_B Transport inhibitor res 98.3 4.9E-08 1.7E-12 66.9 -1.1 85 7-99 430-518 (594)
148 4fdw_A Leucine rich hypothetic 98.1 1.7E-05 5.8E-10 52.7 7.7 88 3-99 265-357 (401)
149 3ogk_B Coronatine-insensitive 98.0 6.5E-07 2.2E-11 61.3 0.3 81 7-95 162-251 (592)
150 2p1m_B Transport inhibitor res 98.0 1.6E-06 5.5E-11 59.4 2.1 89 7-98 103-195 (594)
151 2ra8_A Uncharacterized protein 97.7 2.3E-05 7.7E-10 51.6 3.4 92 7-101 217-321 (362)
152 4fdw_A Leucine rich hypothetic 97.7 0.00029 9.9E-09 46.8 8.2 61 3-68 174-234 (401)
153 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.2E-10 47.9 1.3 67 4-73 80-153 (176)
154 4gt6_A Cell surface protein; l 97.7 0.00043 1.5E-08 45.5 8.8 83 5-97 284-367 (394)
155 2ra8_A Uncharacterized protein 97.5 0.00019 6.5E-09 47.2 5.8 57 6-68 169-227 (362)
156 4fs7_A Uncharacterized protein 97.5 0.00035 1.2E-08 46.0 6.8 84 4-97 292-376 (394)
157 4h09_A Hypothetical leucine ri 97.4 0.00061 2.1E-08 44.4 6.8 83 5-96 259-342 (379)
158 3rfe_A Platelet glycoprotein I 97.3 0.00052 1.8E-08 38.7 5.2 56 13-73 12-68 (130)
159 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00039 1.3E-08 42.1 3.4 89 6-97 38-136 (197)
160 4gt6_A Cell surface protein; l 97.1 0.0042 1.4E-07 40.8 8.3 84 4-97 260-344 (394)
161 4h09_A Hypothetical leucine ri 97.0 0.0045 1.5E-07 40.3 7.7 84 5-97 236-320 (379)
162 4fs7_A Uncharacterized protein 97.0 0.0019 6.6E-08 42.4 6.0 79 3-92 314-393 (394)
163 3rfe_A Platelet glycoprotein I 97.0 0.0031 1E-07 35.5 6.0 36 10-46 32-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00042 1.4E-08 42.0 2.2 93 4-99 65-169 (197)
165 2lz0_A Uncharacterized protein 79.7 4.8 0.00017 21.2 4.5 39 28-69 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=2.8e-16 Score=110.98 Aligned_cols=96 Identities=22% Similarity=0.348 Sum_probs=90.3
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|+.|++++|.+.+.+| ..+..++.|+.|++++|.+ .+..|..++.+++|+.|++++|++++.. |
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L~~L~~LdLs~N~l~g~i----p 697 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGRI----P 697 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEECC----C
T ss_pred chhhhccccccEEECcCCcccccCC-HHHhccccCCEEeCcCCcc--CCCCChHHhCCCCCCEEECCCCcccCcC----C
Confidence 4567788999999999999998899 8999999999999999999 6788999999999999999999999998 9
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+..+++|+++++++|.++|.+|
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECC
T ss_pred hHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999887
No 2
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.4e-15 Score=91.79 Aligned_cols=91 Identities=16% Similarity=0.319 Sum_probs=74.8
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..| ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+++.. | .+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~ 122 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKI--KEISNKMFLGLHQLKTLNLYDNQISCVM----PGSF 122 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCC--CEECSSSSTTCTTCCEEECCSSCCCEEC----TTSS
T ss_pred cccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCCeeC----HHHh
Confidence 6778888888998888886556 7788888889999988888 4555556778888899999998888777 7 78
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~ 102 (104)
..+++|+++++++|.+.+.
T Consensus 123 ~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCTTCCEEECTTCCBCCS
T ss_pred hcCCCCCEEEeCCCCccCc
Confidence 8888999999999888764
No 3
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.2e-15 Score=88.90 Aligned_cols=92 Identities=25% Similarity=0.371 Sum_probs=66.9
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|..+++|++|++++|.+.+..+ ..|.++++|+.|++++|++ ....+..|..+++|+.|++++|.+.... +
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l--~~i~~~~f~~l~~L~~L~L~~N~l~~~~----~ 119 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSLRLLSLHGNDISVVP----E 119 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CBCCTTTTTTCTTCCEEECCSSCCCBCC----T
T ss_pred HHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCcc--CEeCHHHhCCCCCCCEEECCCCCCCeeC----h
Confidence 4566777788888888888774444 6677778888888888877 4444556777778888888888877554 4
Q ss_pred -ccCCCCCCcEEEcCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~ 100 (104)
.+..+++|+.+++++|++.
T Consensus 120 ~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 120 GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTCTTCCEEECCSSCEE
T ss_pred hhhhcCccccEEEeCCCCee
Confidence 6777788888888887764
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=9.4e-15 Score=89.89 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=58.3
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 125 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVG----NDSF 125 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCCCBC----TTSS
T ss_pred hccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCCeEC----HhHc
Confidence 5566777777777777763333 4566677777777777776 3444445666667777777777666555 5 56
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~ 102 (104)
..+++|+.|++++|.+++.
T Consensus 126 ~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTCTTCSEEECTTSCCCCB
T ss_pred CCCccCCEEECCCCcCCEE
Confidence 6666666666666666553
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=9e-15 Score=89.97 Aligned_cols=91 Identities=27% Similarity=0.388 Sum_probs=59.0
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..|.++++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~ 123 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLR----VDA 123 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred HhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcC--CccCHhHccCCCCCCEEECCCCCCCEeC----HHH
Confidence 45666777777777777764445 6667777777777777776 3332334566667777777777776555 5 6
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.+++
T Consensus 124 ~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCCCEEECCCCcCCE
Confidence 6666777777777766654
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=1.5e-14 Score=85.87 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=76.5
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNF 86 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~ 86 (104)
.+++++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.+.. + .+..+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQLKSIP----RGAFDNL 101 (170)
T ss_dssp CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTC
T ss_pred CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCc--CccChhhccCCCCCCEEECCCCccCEeC----HHHhcCC
Confidence 3789999999999996556 7899999999999999999 5544556789999999999999999776 6 78999
Q ss_pred CCCcEEEcCCCCCCCC
Q 040978 87 TNLEYLKLNDSPLHIS 102 (104)
Q Consensus 87 ~~L~~l~l~~n~~~~~ 102 (104)
++|++|++++|++...
T Consensus 102 ~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 102 KSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCBCTT
T ss_pred CCCCEEEeCCCCCCCC
Confidence 9999999999998653
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=5.6e-15 Score=95.60 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=76.6
Q ss_pred CccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+|+.+..+++|++|++++|.+. ..| ..+..+++|+.|++++|++ .+..|..+..+++|+.|++++|.+.+..
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~-~l~-~~l~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~~~~~~---- 269 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLS-ALG-PAIHHLPKLEELDLRGCTA--LRNYPPIFGGRAPLKRLILKDCSNLLTL---- 269 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCC-CCC-GGGGGCTTCCEEECTTCTT--CCBCCCCTTCCCCCCEEECTTCTTCCBC----
T ss_pred chHhhcCCCCCCEEEccCCCCC-cCc-hhhccCCCCCEEECcCCcc--hhhhHHHhcCCCCCCEEECCCCCchhhc----
Confidence 3566777888888888888887 456 5677888888888888877 5666777888888888888888887777
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
| .+..+++|+.|++++|.+.+.+|
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred chhhhcCCCCCEEeCCCCCchhhcc
Confidence 7 88888888888888888888776
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=89.76 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=82.8
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.+.. |
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~ 147 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQITTVA----PG 147 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCC--CCBCTTSSTTCTTCSEEECTTSCCCCBC----TT
T ss_pred HHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcC--CeECHhHcCCCccCCEEECCCCcCCEEC----HH
Confidence 468899999999999999995555 7789999999999999999 5666778999999999999999999887 7
Q ss_pred ccCCCCCCcEEEcCCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~~ 102 (104)
.+..+++|+.+++++|++.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECS
T ss_pred HhcCCCCCCEEEecCcCCcCC
Confidence 899999999999999998653
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.4e-14 Score=85.35 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=74.7
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.... + .+..++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKL--TAIPTGVFDKLTQLTQLDLNDNHLKSIP----RGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCC--CccChhHhCCcchhhEEECCCCccceeC----HHHhcccc
Confidence 789999999999996556 7899999999999999999 4443445788999999999999999665 5 689999
Q ss_pred CCcEEEcCCCCCCC
Q 040978 88 NLEYLKLNDSPLHI 101 (104)
Q Consensus 88 ~L~~l~l~~n~~~~ 101 (104)
+|++|++++|++..
T Consensus 106 ~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 106 SLTHIYLYNNPWDC 119 (174)
T ss_dssp TCSEEECCSSCBCT
T ss_pred CCCEEEeCCCCccc
Confidence 99999999999864
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2e-14 Score=85.47 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=67.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.+++++|.+.+.. + .
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~ 119 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKL--QSLPNGVFDKLTQLKELALDTNQLKSVP----DGI 119 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred HhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCc--cccCHHHhhCCcccCEEECcCCcceEeC----HHH
Confidence 35677888888888888874333 5567788888888888888 4433445677788888888888887554 4 5
Q ss_pred cCCCCCCcEEEcCCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~~ 102 (104)
+..+++|+.+++++|.+.+.
T Consensus 120 ~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred hcCCcccCEEEecCCCeecc
Confidence 67788888888888887764
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=3e-14 Score=87.62 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=81.4
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|..+++|++|++++|.+. .++...+.++++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. +
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~ 145 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIA----K 145 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCC----T
T ss_pred HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCC--CEeCHHHcCCCCCCCEEECCCCcCCEEC----H
Confidence 567899999999999999999 55526678999999999999999 5666778999999999999999999776 6
Q ss_pred -ccCCCCCCcEEEcCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~ 100 (104)
.+..+++|+.+++++|++.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEE
T ss_pred HHHhCCCCCCEEEeCCCCcC
Confidence 7899999999999999874
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=6.5e-14 Score=85.12 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=41.3
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+ .+...+..+++|++|++++|++ ....+..+..+++|+.|++++|.+.+.. + .+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~ 120 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLP----DGVF 120 (208)
T ss_dssp TTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcC--CccCHhHhcCccCCCEEEcCCCcCcccC----HhHh
Confidence 3445555555555555552 2213344555555555555555 2222223444455555555555554333 2 33
Q ss_pred CCCCCCcEEEcCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~ 100 (104)
..+++|++|++++|.++
T Consensus 121 ~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred ccCCcCCEEECCCCccc
Confidence 44444444444444443
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=1.6e-15 Score=97.52 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=49.2
Q ss_pred ccccCCCCCCCEEECCC-CCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 2 FAEFNSFNNLELLDMSF-NEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
|+.+..+++|++|++++ |.+.+..| ..+..+++|++|++++|.+ ....|..+..+++|+.|++++|.+.+..
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---- 141 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTL---- 141 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCC----
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCee--CCcCCHHHhCCCCCCEEeCCCCccCCcC----
Confidence 34455555555555553 55554444 4555555555555555555 3344445555555555555555555444
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~ 102 (104)
| .+..+++|++|++++|.+++.
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGA 164 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEE
T ss_pred ChHHhcCCCCCeEECcCCcccCc
Confidence 4 455555555555555555433
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=6.9e-14 Score=87.28 Aligned_cols=66 Identities=24% Similarity=0.479 Sum_probs=31.2
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCcc--cccChhHhcccCCCCEEEcCCCcCC
Confidence 4455555555555555553333 3444555555555555555 2222233444444444444444444
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4.4e-14 Score=85.24 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
.++++|++++|.+.+..+...+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .+..++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEIS----NKMFLGLH 102 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEEC----SSSSTTCT
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC--CCcCHhHcCCcccCCEEECCCCcCCccC----HHHhcCCC
Confidence 38999999999998444312488999999999999999 5666788999999999999999999776 6 789999
Q ss_pred CCcEEEcCCCCCCCCC
Q 040978 88 NLEYLKLNDSPLHISL 103 (104)
Q Consensus 88 ~L~~l~l~~n~~~~~~ 103 (104)
+|++|++++|.+++..
T Consensus 103 ~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVM 118 (192)
T ss_dssp TCCEEECCSSCCCEEC
T ss_pred CCCEEECCCCcCCeeC
Confidence 9999999999998754
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=7.8e-14 Score=87.03 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=44.7
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..+..+++|+.|++++|.+.+.. + .+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 151 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQSIP----AGAF 151 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcC--CCcChhHhccCCcccEEECcCCcCCccC----HHHc
Confidence 4555566666666666553222 4445555555555555555 2222233444555555555555555333 3 44
Q ss_pred CCCCCCcEEEcCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~ 100 (104)
..+++|++|++++|.+.
T Consensus 152 ~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred CcCcCCCEEECCCCcCC
Confidence 44555555555555444
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.54 E-value=3.1e-15 Score=96.15 Aligned_cols=95 Identities=16% Similarity=0.291 Sum_probs=72.5
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|+.|..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+ ....|..+..+++|+.|++++|.+.+.. |
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~----p 166 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAI----P 166 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEE--ESCCCGGGGGCTTCCEEECCSSCCEEEC----C
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCCCEEeCCCCcc--CCcCChHHhcCCCCCeEECcCCcccCcC----C
Confidence 5667788888888888888876666 7777888888888888887 4566777777888888888888887666 6
Q ss_pred -ccCCCC-CCcEEEcCCCCCCCCC
Q 040978 82 -ELHNFT-NLEYLKLNDSPLHISL 103 (104)
Q Consensus 82 -~~~~~~-~L~~l~l~~n~~~~~~ 103 (104)
.+..++ .|+.|++++|.+.+.+
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEEC
T ss_pred HHHhhhhhcCcEEECcCCeeeccC
Confidence 777776 7788888877776544
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=8.5e-14 Score=87.83 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=40.3
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~ 177 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQSLP----EGVF 177 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hcCCcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCcc--CccCHHHhccCccCCEEECCCCCcCccC----HHHh
Confidence 3445555555555555552222 3344455555555555554 2222233344444555555555444333 2 33
Q ss_pred CCCCCCcEEEcCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~ 100 (104)
..+++|+.|++++|.+.
T Consensus 178 ~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred cCCccCCEEECCCCcCC
Confidence 44444444444444443
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.3e-13 Score=83.78 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=71.0
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~ 143 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQL--QSLPDGVFDKLTQLKDLRLYQNQLKSVP----DGV 143 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred hcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcC--cccCHhHhccCCcCCEEECCCCccceeC----HHH
Confidence 35778888888888888884333 5577888888888888888 4444445777888888888888888655 5 6
Q ss_pred cCCCCCCcEEEcCCCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~~~ 103 (104)
+..+++|+.+++++|.+.+..
T Consensus 144 ~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp TTTCTTCCEEECCSCCBCCCT
T ss_pred hccCCCccEEEecCCCeecCC
Confidence 778888888888888877654
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=5.3e-14 Score=93.76 Aligned_cols=92 Identities=26% Similarity=0.323 Sum_probs=44.7
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..+..+++|+.|++++|.+++.. + .+
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~ 391 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTNQLKSVP----DGIF 391 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSCCC----TTTT
T ss_pred hcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcc--cccChhhccccccccEEECCCCccccCC----HhHh
Confidence 3444444444444444442223 3444444555555555544 2333444445555555555555555333 3 44
Q ss_pred CCCCCCcEEEcCCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~~ 103 (104)
..+++|+.+++++|++++..
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCT
T ss_pred ccCCcccEEEccCCCcccCC
Confidence 55556666666666555543
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=6.2e-14 Score=96.14 Aligned_cols=92 Identities=24% Similarity=0.333 Sum_probs=65.6
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..|.++++|++|++++|.+. .++...|.++++|++|++++|++ ....+..|..+++|+.|++++|.+.+.. +
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l--~~l~~~~f~~L~~L~~L~Ls~N~l~~l~----~~ 142 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLE----NF 142 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC--CEECGGGGTTCTTCCEEECTTSCCCCST----TC
T ss_pred HHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC--CCCCHHHhcCCCCCCEEECCCCcCCCCC----hh
Confidence 45777788888888888777 34325677778888888888877 3433456777778888888888777554 4
Q ss_pred ccCCCCCCcEEEcCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~ 101 (104)
.|+.+++|++|++++|.+.+
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCC
T ss_pred hhhcCcccCeeccccCcccc
Confidence 67777777777777777654
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=1.2e-13 Score=85.33 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=44.4
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+. .++...+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+. .+ | .
T Consensus 59 ~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~-~l----p~~ 130 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLT-EL----PRG 130 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC-SC----CTT
T ss_pred HhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcC--CccChhHhCcchhhCeEeccCCccc-cc----Ccc
Confidence 3455555666666666555 23313445555555555555555 2222333445555555555555555 22 3 4
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|++|++++|.+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp GGGCTTCSEEECCSSCCC
T ss_pred cccCCCCCEEECCCCcCC
Confidence 444455555555555443
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=2e-14 Score=101.64 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=57.3
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|++|++++|.+.+..| ..+..+++|+.|++++|++ .+..|..++.+++|+.|++++|.+.+.. |
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~----p 531 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNI----P 531 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEEEC----C
T ss_pred CHHHcCCCCceEEEecCCcccCcCC-HHHhcCCCCCEEEccCCcc--CCcCChHHhcCCCCCEEECCCCcccCcC----C
Confidence 3444555555555565555554455 5555566666666666665 3455555556666666666666666555 5
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+..+++|+.+++++|.+.|.+|
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCC
T ss_pred HHHcCCCCCCEEECCCCccCCcCC
Confidence 66666666666666666666554
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=1.4e-13 Score=86.78 Aligned_cols=92 Identities=25% Similarity=0.400 Sum_probs=52.2
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..+..+++|+.|++++|.+.+.. + .+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~ 201 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKSVP----DGVF 201 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTT
T ss_pred hccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCc--CccCHHHhcCCccCCEEECCCCcCCccC----HHHH
Confidence 4556666666666666653322 4455566666666666666 3333334555666666666666666544 4 45
Q ss_pred CCCCCCcEEEcCCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~~ 103 (104)
..+++|+.+++++|.+.+..
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCT
T ss_pred hCCcCCCEEEccCCCccccC
Confidence 56666666666666655543
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=9.3e-14 Score=85.84 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=80.1
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ..+|..+..+++|+.|++++|.+.... +
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l---~~lp~~~~~l~~L~~L~L~~N~l~~~~----~~ 153 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKL---TELPRGIERLTHLTHLALDQNQLKSIP----HG 153 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC---CSCCTTGGGCTTCSEEECCSSCCCCCC----TT
T ss_pred hhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcc---cccCcccccCCCCCEEECCCCcCCccC----HH
Confidence 346889999999999999994444 6688999999999999999 467778888999999999999999666 5
Q ss_pred ccCCCCCCcEEEcCCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~~ 102 (104)
.+..+++|+.+++++|++...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 789999999999999998754
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=5.6e-14 Score=81.39 Aligned_cols=92 Identities=26% Similarity=0.305 Sum_probs=72.7
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc-ccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET-VTITT 80 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~ 80 (104)
|+.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+ ....|..+..+++|+.+++++|.+.+. .
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~ls~N~i~~~~~---- 105 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGNKIKDLST---- 105 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC--CSCTHHHHHHCTTCCEEECTTSCCCSHHH----
T ss_pred HHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc--cchHHHHhhhCCCCCEEECCCCcCCChHH----
Confidence 45567788899999998888743 4677888899999999988 444677677788899999999988864 2
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~ 102 (104)
+ .+..+++|+++++++|.+++.
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGS
T ss_pred HHHHhhCCCCCEEeCcCCcccch
Confidence 3 678888999999999987664
No 27
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=83.30 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=77.0
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
+++++|++++|.+. .+| ..+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.... + .|..++
T Consensus 31 ~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIP----PRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCT
T ss_pred CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccCEeC----HHHhCCCC
Confidence 58999999999998 778 8899999999999999999 5555667999999999999999999777 7 899999
Q ss_pred CCcEEEcCCCCCCC
Q 040978 88 NLEYLKLNDSPLHI 101 (104)
Q Consensus 88 ~L~~l~l~~n~~~~ 101 (104)
+|++|++++|.+++
T Consensus 103 ~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 103 SLRLLSLHGNDISV 116 (193)
T ss_dssp TCCEEECCSSCCCB
T ss_pred CCCEEECCCCCCCe
Confidence 99999999999875
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=1.6e-13 Score=91.47 Aligned_cols=93 Identities=29% Similarity=0.354 Sum_probs=80.5
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. |
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~ 364 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALG----D 364 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC--CEECGGGGTTCTTCCEEECCSSCCCEEC----T
T ss_pred hhhcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEECCCCcc--CCcChhHhcCcccCCEEECCCCcccccC----h
Confidence 4567888999999999999985555 7888999999999999999 5666778889999999999999998777 7
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|++|++++|.+++
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSC
T ss_pred hhccccccccEEECCCCcccc
Confidence 88999999999999998876
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=2.2e-13 Score=82.34 Aligned_cols=91 Identities=24% Similarity=0.396 Sum_probs=66.6
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCc-CCcccccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNN-FTETVTITTQ 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~ 81 (104)
+.+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|. +.. . +
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i--~~~~~~~l~~l~~L~~L~L~~n~~i~~-~----~ 153 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAH--DDSILTKINTLPKVNSIDLSYNGAITD-I----M 153 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSSBC--BGGGHHHHTTCSSCCEEECCSCTBCCC-C----G
T ss_pred hhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEecCCcc--CcHhHHHHhhCCCCCEEEccCCCCccc-c----H
Confidence 456777888888888888875456 6777888888888888888 45566777778888888888887 543 3 3
Q ss_pred ccCCCCCCcEEEcCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.|++++|.+++
T Consensus 154 ~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp GGGGCSSCCEEECTTBCCCC
T ss_pred hhcCCCCCCEEECCCCCCcC
Confidence 56677777777777777654
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=2.7e-13 Score=86.45 Aligned_cols=92 Identities=28% Similarity=0.351 Sum_probs=60.3
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.++... +
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~ 165 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELP----A 165 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCSCCC----T
T ss_pred chhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCC--CccChhhcccccCCCEEECCCCcCCccC----H
Confidence 4445666777777777777774333 5566777777777777777 3333445566777777777777777444 3
Q ss_pred -ccCCCCCCcEEEcCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~ 100 (104)
.+..+++|+.|++++|.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCC
T ss_pred HHhcCcCCCCEEECCCCcCC
Confidence 5566777777777777665
No 31
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=1.5e-13 Score=89.03 Aligned_cols=92 Identities=23% Similarity=0.346 Sum_probs=77.0
Q ss_pred CccccCCCCCCCEEECCC-CCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccc
Q 040978 1 MFAEFNSFNNLELLDMSF-NEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTIT 79 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 79 (104)
+|. +..+.+|++|++++ |.+.+..+ ..|..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~--- 96 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGL--RFVAPDAFHFTPRLSRLNLSFNALESLS--- 96 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCC--CEECTTGGGSCSCCCEEECCSSCCSCCC---
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcc--ceeCHHHhcCCcCCCEEeCCCCccceeC---
Confidence 466 88889999999996 99985444 7799999999999999999 5666778899999999999999999665
Q ss_pred cc-ccCCCCCCcEEEcCCCCCCC
Q 040978 80 TQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 80 ~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
+ .+..++ |+.|++.+|.+..
T Consensus 97 -~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 -WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -STTTCSCC-CCEEECCSSCCCC
T ss_pred -HHHcccCC-ceEEEeeCCCccC
Confidence 5 555555 9999999998863
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=1.4e-13 Score=94.34 Aligned_cols=92 Identities=25% Similarity=0.345 Sum_probs=66.2
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|..+++|++|++++|.+.+..| ..|.++++|+.|++++|++ ....+..|..+++|+.|++++|++++.. |
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~ 559 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSK----K 559 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCC--CBCCCGGGTTCTTCCEEECTTSCCCBCC----S
T ss_pred chhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcC--CCCChhHHhCCCCCCEEECCCCcCCCCC----H
Confidence 3456677778888888887775445 6677777788888888777 4444556777777888888888777666 6
Q ss_pred -ccCCC-CCCcEEEcCCCCCC
Q 040978 82 -ELHNF-TNLEYLKLNDSPLH 100 (104)
Q Consensus 82 -~~~~~-~~L~~l~l~~n~~~ 100 (104)
.+..+ ++|++|++++|++.
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBC
T ss_pred HHHHhhhCcCCEEEeeCCCCc
Confidence 66666 57788888877764
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=1.8e-13 Score=87.36 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=40.7
Q ss_pred cCCCCCCCEEECCCCCCCC-ccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 5 FNSFNNLELLDMSFNEINN-LVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
+..+++|++|++++|.+.+ ..| ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~ 218 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFP 218 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCSBCC----SGG
T ss_pred cccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCCCc--CCcCHHHhcCCCCCCEEECCCCccCccC----hhh
Confidence 3344444444444444432 123 3444444455555554444 2322334444445555555555444333 3 4
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.+.+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GTTCTTCCEEECTTSCCCB
T ss_pred ccCcccCCEeECCCCCCcc
Confidence 4444555555555554443
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=3.5e-13 Score=85.30 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=7.4
Q ss_pred ccCCCCCCcEEEcCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~ 99 (104)
.+..+++|+.|++++|.+
T Consensus 196 ~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HccCcccccEeeCCCCcC
Confidence 333344444444444433
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=3.4e-13 Score=92.67 Aligned_cols=90 Identities=24% Similarity=0.359 Sum_probs=48.2
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|.++++|++|++++|.+.+..+ ..|..+++|+.|++++|.+ ....|..+..+++|+.|++++|.+.+.. + .
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~ 123 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLE----SFP 123 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC--CCCCTTSSTTCTTCCEEECTTSCCCCSS----SSC
T ss_pred hccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcc--cccChhhcCCcccCCEEEccCCcccccc----ccc
Confidence 45556666666666666553333 4555566666666666655 3333455555555666666555555433 3 4
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|++|++++|.+.
T Consensus 124 ~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp CTTCTTCCEEECCSSCCC
T ss_pred cCCCCCCCEEeCCCCccc
Confidence 444444444444444443
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=4.2e-13 Score=84.91 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=52.0
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... +
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~ 171 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVP----ER 171 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCEEC----TT
T ss_pred HHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcc--cccCHhHhccCCCccEEECCCCcccccC----HH
Confidence 345556666666666666663333 4555566666666666666 3333334555666666666666665443 3
Q ss_pred ccCCCCCCcEEEcCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.|++++|.+.+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCE
T ss_pred HhcCccccCEEECCCCcccc
Confidence 45556666666666665544
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=1e-12 Score=78.09 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNF 86 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~ 86 (104)
.++++.|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+++.. + .+..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLP----NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTC
T ss_pred CCCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCccccC----HHHhhCC
Confidence 4689999999999994444 6678999999999999999 4444556788999999999999999766 5 68899
Q ss_pred CCCcEEEcCCCCCCC
Q 040978 87 TNLEYLKLNDSPLHI 101 (104)
Q Consensus 87 ~~L~~l~l~~n~~~~ 101 (104)
++|++|++++|.+++
T Consensus 100 ~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 100 TQLKELALDTNQLKS 114 (177)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred cccCEEECcCCcceE
Confidence 999999999999875
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=3.8e-13 Score=87.92 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=40.4
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
.+++|++|++++|.+.+..+ ..|..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.... + .|..
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~ 134 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVD----RNAFED 134 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEEC----TTTTTT
T ss_pred cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC--CcCCHHHhCCCcCCCEEECCCCcccEEC----HHHhCC
Confidence 44555555555555552222 3445555555555555555 2222233444455555555555544333 3 4444
Q ss_pred CCCCcEEEcCCCCCC
Q 040978 86 FTNLEYLKLNDSPLH 100 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~ 100 (104)
+++|+.|++++|.++
T Consensus 135 l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 135 MAQLQKLYLSQNQIS 149 (361)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cccCCEEECCCCcCC
Confidence 444444444444443
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=8.5e-13 Score=83.10 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=7.1
Q ss_pred cCCCCCCcEEEcCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~ 99 (104)
+..+++|++|++++|.+
T Consensus 177 ~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQL 193 (270)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hccCCCcCEEECCCCcC
Confidence 33444444444444433
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=9.8e-14 Score=81.80 Aligned_cols=92 Identities=26% Similarity=0.278 Sum_probs=57.0
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. .+
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~ 113 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI--FGGLDMLAEKLPNLTHLNLSGNKLKDIS---TL 113 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC--CSCCCHHHHHCTTCCEEECBSSSCCSSG---GG
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC--chHHHHHHhhCCCCCEEeccCCccCcch---hH
Confidence 33445566677777777766632 3556666777777777776 3334555555667777777777766532 02
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.|++++|.+++
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGT
T ss_pred HHHhcCCCCCEEEeeCCcCcc
Confidence 55667777777777776654
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.47 E-value=9e-14 Score=89.95 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=65.8
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccC
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELH 84 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~ 84 (104)
..+++|++|++++|.+. .+| ..+..+++|+.|++++|.+ ...+..+..+++|+.|++++|.+.+.. | .+.
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N~l---~~l~~~l~~l~~L~~L~Ls~n~~~~~~----p~~~~ 250 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPL---SALGPAIHHLPKLEELDLRGCTALRNY----PPIFG 250 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESSCC---CCCCGGGGGCTTCCEEECTTCTTCCBC----CCCTT
T ss_pred ccCCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCCCC---CcCchhhccCCCCCEEECcCCcchhhh----HHHhc
Confidence 34667777777777766 566 5677777778888877777 335556777778888888887777676 7 778
Q ss_pred CCCCCcEEEcCCCCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+++|+.|++++|.+.+.+|
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCCEEECCCCCchhhcc
Confidence 88888888888887777654
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=5.4e-13 Score=91.71 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=64.8
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|.++++|++|++++|.+.+..| ..|..+++|+.|++++|.+ ....|..+..+++|+.|++++|.+.+.. +
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~l~----~ 122 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSID----F 122 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC--SEECTTTTSSCTTCCEEECTTSCCSCGG----G
T ss_pred hhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcc--cccChhhhcccccccEeeccccCcccCC----c
Confidence 3456777777777777777774445 6677777777777777777 4555666777777777777777777654 4
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|++|++++|.+.+
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCC
T ss_pred chhccCCcccEEECCCCcccc
Confidence 66677777777777776654
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.1e-12 Score=82.58 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=41.4
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+. .++...+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... + .
T Consensus 56 ~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 128 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLP----PRV 128 (270)
T ss_dssp SSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSSCCCCCC----TTT
T ss_pred HhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCCccCeeC----HHH
Confidence 3455555555555555555 23213344555555555555555 2222233444445555555555444333 3 3
Q ss_pred cCCCCCCcEEEcCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~ 99 (104)
+..+++|++|++++|.+
T Consensus 129 ~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hCcCcCCCEEECCCCcC
Confidence 34444444444444433
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=4e-13 Score=85.70 Aligned_cols=94 Identities=24% Similarity=0.334 Sum_probs=81.2
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. +
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~ 240 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSK----K 240 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEECTTSCCCBCS----S
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeECCCCCCcccC----H
Confidence 5567889999999999999995556 7889999999999999999 4544557888999999999999999877 7
Q ss_pred -ccCCCC-CCcEEEcCCCCCCCC
Q 040978 82 -ELHNFT-NLEYLKLNDSPLHIS 102 (104)
Q Consensus 82 -~~~~~~-~L~~l~l~~n~~~~~ 102 (104)
.+..++ +|+.+++++|++.+.
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHHhhhccCCEEEccCCCeecc
Confidence 788874 999999999998653
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=8.1e-13 Score=83.27 Aligned_cols=90 Identities=24% Similarity=0.352 Sum_probs=48.7
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 119 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLE----NFP 119 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCST----TCC
T ss_pred HhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCcc--CccChhhhcCCccccEEECCCCCccccC----chh
Confidence 45556666666666666653222 4555666666666666665 3333344555555555555555555443 3 4
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|++|++++|.+.
T Consensus 120 ~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECcCCccc
Confidence 445555555555555443
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=3.9e-13 Score=91.62 Aligned_cols=94 Identities=28% Similarity=0.391 Sum_probs=62.8
Q ss_pred cccCCCCCCCEEECCCCCCC-CccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 3 AEFNSFNNLELLDMSFNEIN-NLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
..+..+++|++|++++|.+. +..| ..+..+++|+.|++++|.+ ....|..+..+++|+.|++++|.+++.. +
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~ 511 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKSVP----D 511 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSCCC----T
T ss_pred hhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCcc--ccCChhhhhcccCCCEEeCCCCcCCCCC----H
Confidence 34555666666666666665 2355 5666667777777777776 4444566667777777777777777555 5
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
.+..+++|+.+++++|++.+..
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCT
T ss_pred HHhhcccCCcEEEecCCcccCCC
Confidence 6677777777777777777654
No 47
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=5.1e-14 Score=99.33 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=61.4
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|+.+..+++|++|++++|.+. .+| ..+..+++|+.|++++|++ . .+|..+..+++|+.|++++|.+. .+ |
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l--~-~lp~~~~~l~~L~~L~L~~N~l~-~l----p 309 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRL--T-SLPAELGSCFQLKYFYFFDNMVT-TL----P 309 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCC--S-SCCSSGGGGTTCSEEECCSSCCC-CC----C
T ss_pred ChhhcCCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcC--C-ccChhhcCCCCCCEEECCCCCCC-cc----C
Confidence 344455666666666666666 556 5666667777777777776 3 45666666677777777777665 44 6
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
.+..+++|++|++++|.+++.+
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHH
T ss_pred hhhhcCCCccEEeCCCCccCCCC
Confidence 6777777777777777777643
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=6.4e-13 Score=86.86 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=77.9
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..|..+++|++|++++|.+....+ ..|..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.... +
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i--~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~ 154 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRFP----VE 154 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCSCC----GG
T ss_pred hhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcc--cEECHHHhCCcccCCEEECCCCcCCeeC----HH
Confidence 468899999999999999994444 6789999999999999999 5656778999999999999999999654 4
Q ss_pred cc---CCCCCCcEEEcCCCCCCC
Q 040978 82 EL---HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ~~---~~~~~L~~l~l~~n~~~~ 101 (104)
.+ ..+++|+.|++++|.+.+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCC
T ss_pred HhcCcccCCcCCEEECCCCCCCc
Confidence 45 568999999999999875
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=3.6e-13 Score=92.85 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=78.2
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc-cccccc-c
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET-VTITTQ-E 82 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~-~ 82 (104)
++.+++|+.|++++|.+. .+| ..+..+++|+.|++++|.+ + .+| .+..+++|+.|++++|.+++. . | .
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l--~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~----p~~ 528 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNAL--E-NVD-GVANLPRLQELLLCNNRLQQSAA----IQP 528 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCC--C-CCG-GGTTCSSCCEEECCSSCCCSSST----TGG
T ss_pred ccccccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCC--C-CCc-ccCCCCCCcEEECCCCCCCCCCC----cHH
Confidence 788999999999999999 778 8899999999999999999 3 356 788999999999999999866 2 4 7
Q ss_pred cCCCCCCcEEEcCCCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~~~ 103 (104)
+..+++|+.|++++|.+++..
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSS
T ss_pred HhcCCCCCEEEecCCcCCCCc
Confidence 889999999999999987754
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=7.5e-13 Score=91.00 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=81.4
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCc-cccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTE-TVTITT 80 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~ 80 (104)
|..|.++++|++|++++|.+.+..| ..+..+++|++|++++|.+ ....+..++.+++|+.|++++|.+.+ ..
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~l---- 145 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFIHSCKL---- 145 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCC--CCSSSSCCTTCTTCCEEECCSSCCCCCCC----
T ss_pred HHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCcc--ccccccccCCCCCCCEEeCCCCcccceec----
Confidence 4568899999999999999996657 8899999999999999999 44444678899999999999999975 45
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~ 102 (104)
| .+..+++|++|++++|.+.+.
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEE
T ss_pred hHhHhhcCCCCEEEccCCcceec
Confidence 7 899999999999999988764
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3.6e-13 Score=81.34 Aligned_cols=90 Identities=20% Similarity=0.394 Sum_probs=74.9
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCc-ccCCchhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVG-VRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. + ...+ .+..+++|+.|++++|.+.+..
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i---~~~~-~l~~l~~L~~L~l~~n~i~~~~---- 175 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAI---TDIM-PLKTLPELKSLNIQFDGVHDYR---- 175 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBC---CCCG-GGGGCSSCCEEECTTBCCCCCT----
T ss_pred ChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCc---cccH-hhcCCCCCCEEECCCCCCcChH----
Confidence 4567889999999999999996566 788999999999999998 6 4444 5888999999999999998653
Q ss_pred cccCCCCCCcEEEcCCCCCCC
Q 040978 81 QELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 81 ~~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.|++++|.+.+
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 67889999999999999875
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=7.4e-13 Score=88.90 Aligned_cols=91 Identities=24% Similarity=0.350 Sum_probs=50.5
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.... +
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~ 122 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILL----DY 122 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEEC----TT
T ss_pred hHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCC----hh
Confidence 345556666666666666664334 5566666666666666665 2222233555566666666666655444 4
Q ss_pred ccCCCCCCcEEEcCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~ 100 (104)
.+..+++|+.|++++|.+.
T Consensus 123 ~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp TTTTCTTCCEEEECCTTCC
T ss_pred HccccccCCEEECCCCccc
Confidence 4555555555555555443
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.6e-12 Score=89.79 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=59.6
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 166 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIE----DDT 166 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCC----TTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCC----hhh
Confidence 56666777777777777664433 5566677777777777776 3322334566777777777777776655 5 6
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|++|++++|.+++
T Consensus 167 ~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTCTTCCEEECTTSCCSB
T ss_pred hhcCCcCcEEECcCCCCCC
Confidence 6777777777777776654
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=88.64 Aligned_cols=90 Identities=24% Similarity=0.352 Sum_probs=52.6
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ ....+..|..+++|+.|++++|.+.... + .
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~ 119 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLE----NFP 119 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCST----TCS
T ss_pred HhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcC--CccCHhhhcCccccccccccccccccCC----Ccc
Confidence 45666667777777776663333 5566666677777766666 3333445556666666666666655443 3 4
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|++|++++|.+.
T Consensus 120 ~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CTTCTTCCEEECCSSCCC
T ss_pred ccccccccEEecCCCccc
Confidence 455555555555555544
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=2e-12 Score=84.91 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=53.5
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 160 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIE----DDT 160 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCC----TTT
T ss_pred hccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCcc--CcCCHHHhcCCCCCcEEECCCCccCccC----hhh
Confidence 45556666666666666664333 4556666666666666666 2222223455666666666666666544 4 5
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.+++
T Consensus 161 ~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TSSCTTCCEEECCSSCCSB
T ss_pred ccCCCCCCEEECCCCcCCc
Confidence 6666666666666666543
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=1e-12 Score=89.35 Aligned_cols=88 Identities=27% Similarity=0.379 Sum_probs=43.0
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc-cccccc-
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET-VTITTQ- 81 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~- 81 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+. . +
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~ 117 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGV----TS 117 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCS----SC
T ss_pred hhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccch----hh
Confidence 34555555555555555553333 4455555555555555555 333333455555555555555555432 2 2
Q ss_pred ccCCCCCCcEEEcCCCC
Q 040978 82 ELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~ 98 (104)
.+..+++|++|++++|.
T Consensus 118 ~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SCTTCTTCCEEEEEESS
T ss_pred hhhccCCccEEECCCCc
Confidence 34444444444444443
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=4.8e-13 Score=93.01 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=83.9
Q ss_pred CccccC--CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCc-ccCCc-hhhhhcCCC------CCccEEeccCC
Q 040978 1 MFAEFN--SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVG-VRDGS-KLLQSMGSF------PSLNNLYLSSN 70 (104)
Q Consensus 1 ~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~l------~~L~~l~l~~n 70 (104)
+|+.++ ++++|++|++++|.+.+..| ..+..+++|+.|++++|+ + ++ ..|..++.+ ++|+.|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCC--ccccchHHHHhhhccccCCCCCEEECCCC
Confidence 366777 89999999999999998888 899999999999999998 8 55 678777665 89999999999
Q ss_pred cCCcccccccc--ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 71 NFTETVTITTQ--ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+.... . .+..+++|++|++++|.+.|.+|
T Consensus 316 ~l~~ip----~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 316 NLKTFP----VETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CCSSCC----CHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred cCCccC----chhhhccCCCCCEEeCcCCcCccchh
Confidence 999443 2 47899999999999999987775
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=2e-12 Score=81.44 Aligned_cols=92 Identities=25% Similarity=0.363 Sum_probs=74.4
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc-cccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET-VTITTQ 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~ 81 (104)
..|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+. . |
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~l----~ 142 (276)
T 2z62_A 70 GAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKL----P 142 (276)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCC--CCSTTCCCTTCTTCCEEECCSSCCCCCCC----C
T ss_pred HHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCc--cccCchhcccCCCCCEEECcCCccceecC----c
Confidence 357888999999999999885544 7788899999999999988 444444678888999999999988752 4 6
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|++|++++|.+++
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCE
T ss_pred hhhccCCCCCEEECCCCCCCc
Confidence 78888999999999988765
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=1.5e-12 Score=75.35 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCCCCEEECCCCCCC-CccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccC
Q 040978 7 SFNNLELLDMSFNEIN-NLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELH 84 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~ 84 (104)
..++++.|++++|.+. +..| ..+..+++|+.|++++|.+ ... ..+..+++|+.|++++|.+.+.. | .+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGL----EVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCT----HHHHH
T ss_pred CCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchH----HHHhh
Confidence 3578999999999998 5677 7788999999999999999 333 66888999999999999999767 7 777
Q ss_pred CCCCCcEEEcCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~ 101 (104)
.+++|++|++++|.+++
T Consensus 86 ~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HCTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCcCCC
Confidence 89999999999999876
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=3.8e-12 Score=81.13 Aligned_cols=87 Identities=26% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
.+++|++|++++|.+. .+| ..+..+++|+.|++++|++ ....+..|..+++|+.|++++|.+.... + .+..
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~-~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~ 146 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLP----PGLLTP 146 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCC-CCTTTCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCC----TTTTTT
T ss_pred CCCcCCEEECCCCcCC-cCc-hhhccCCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccC----hhhccc
Confidence 3445555555555555 444 4555666666666666666 3333345666666777777777666444 4 5666
Q ss_pred CCCCcEEEcCCCCCCC
Q 040978 86 FTNLEYLKLNDSPLHI 101 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~~ 101 (104)
+++|+.|++++|.+++
T Consensus 147 l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTE 162 (290)
T ss_dssp CTTCCEEECTTSCCSC
T ss_pred ccCCCEEECCCCcCCc
Confidence 7777777777776653
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=1.9e-13 Score=95.06 Aligned_cols=96 Identities=9% Similarity=0.191 Sum_probs=84.8
Q ss_pred CccccCCCCCCCEEECCCCCCCCc-----------------cccCccC--CCCCCCEEeCCCCcccCCchhhhhcCCCCC
Q 040978 1 MFAEFNSFNNLELLDMSFNEINNL-----------------VVPQGYS--GLRKLKSLDLSRVGVRDGSKLLQSMGSFPS 61 (104)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~n~~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~ 61 (104)
+|+.++++++|++|++++|.+.+. +| ..+. .+++|+.|++++|.+ .+..|..+..+++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcC--CccChHHHhcCCC
Confidence 467899999999999999999963 78 8888 999999999999998 6788889999999
Q ss_pred ccEEeccCCc-CCc-ccccccc-ccCCC------CCCcEEEcCCCCCCCCCC
Q 040978 62 LNNLYLSSNN-FTE-TVTITTQ-ELHNF------TNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 62 L~~l~l~~n~-~~~-~~~~~~~-~~~~~------~~L~~l~l~~n~~~~~~~ 104 (104)
|+.|++++|. +++ .. | .+..+ ++|++|++++|.++ .+|
T Consensus 275 L~~L~Ls~n~~l~~~~l----p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 275 MQLINVACNRGISGEQL----KDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp CCEEECTTCTTSCHHHH----HHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred CCEEECcCCCCCccccc----hHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 9999999998 887 66 7 66665 99999999999988 554
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1.4e-12 Score=89.96 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=79.9
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..|+.+++|+.|++++|.+.... + .|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~~ 143 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLP----RGIF 143 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred HccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCC----HHHh
Confidence 5678999999999999995545 7899999999999999999 5655667889999999999999999665 5 67
Q ss_pred CCCCCCcEEEcCCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~~ 103 (104)
..+++|++|++++|.+.+..
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCC
T ss_pred ccCCCCCEEEeeCCcCCCCC
Confidence 89999999999999987754
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.39 E-value=1.9e-12 Score=85.00 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=78.1
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... + .+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~~ 137 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLP----RGIF 137 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCC----HHHh
Confidence 5678999999999999985444 6889999999999999999 5555677889999999999999998554 4 57
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~ 102 (104)
..+++|++|++++|.+.+.
T Consensus 138 ~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCcEEECCCCccCcc
Confidence 8999999999999988764
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.39 E-value=2.3e-12 Score=87.60 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
+++++|++++|.+.+..+ ..+..+++|++|++++|++ ....+..|..+++|+.|++++|.+.+.. + .+..++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLS----SSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCC----HHHHTTCT
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccC----HHHhccCC
Confidence 689999999999995556 7899999999999999999 5666678999999999999999999776 6 799999
Q ss_pred CCcEEEcCCCCCCC
Q 040978 88 NLEYLKLNDSPLHI 101 (104)
Q Consensus 88 ~L~~l~l~~n~~~~ 101 (104)
+|++|++++|.+.+
T Consensus 99 ~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 99 SLKYLNLMGNPYQT 112 (549)
T ss_dssp TCCEEECTTCCCSS
T ss_pred CCcEEECCCCcccc
Confidence 99999999999875
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=2.5e-12 Score=86.05 Aligned_cols=68 Identities=24% Similarity=0.386 Sum_probs=36.6
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
..|..+++|++|++++|.+.+..+ ..+.++++|+.|++++|++ ....+..+..+++|+.|++++|.+.
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC--SBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred HHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcC--CccChhhhcccCCCCEEECCCCCcc
Confidence 345555666666666665553333 4555555666666666655 3322334555555555555555555
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=86.36 Aligned_cols=93 Identities=24% Similarity=0.316 Sum_probs=73.3
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|.++++|++|++++|.+. ..+...+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. +
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~ 145 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYIS----H 145 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEEECCTTCCEEC----T
T ss_pred hhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCcc--ccCChhHccccccCCEEECCCCccceeC----h
Confidence 456788899999999999888 44425678888999999999988 5555667788888888888888887665 6
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.|++++|.+.+
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSS
T ss_pred hhccCCCCCCEEECCCCcCcc
Confidence 77778888888888777654
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=92.59 Aligned_cols=92 Identities=22% Similarity=0.382 Sum_probs=50.3
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhh--cCCCCCccEEeccCCcCCccccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQS--MGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
..|.++++|++|++++|.+.+..| ..+.++++|+.|++++|.+ ....+.. +..+++|+.|++++|.+.+..
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---- 139 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSLY---- 139 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCC--SSCCSTTCCCSSCSSCCEEEEESCCCCCCC----
T ss_pred HHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCC--CcccccCccccccCCCCEEECCCCcccccc----
Confidence 345555556666666655553334 5555555666666666555 2322222 555556666666666555432
Q ss_pred c--ccCCCCCCcEEEcCCCCCCC
Q 040978 81 Q--ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 81 ~--~~~~~~~L~~l~l~~n~~~~ 101 (104)
+ .+..+++|++|++++|.+.+
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCC
T ss_pred cchhHhhCCCCCEEECCCCcCCe
Confidence 2 45566666666666666544
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=2e-12 Score=89.97 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=41.7
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|.++++|++|++++|.+. ..|...+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+.+.. + .+
T Consensus 69 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~ 141 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI--QKIKNNPFVKQKNLITLDLSHNGLSSTK----LGTQ 141 (680)
T ss_dssp HHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC--CCCCSCTTTTCTTCCEEECCSSCCSCCC----CCSS
T ss_pred HhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc--CccChhHccccCCCCEEECCCCcccccC----chhh
Confidence 334444444444444444 22212344444555555555544 2222234444555555555555554443 4 44
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|++|++++|.+++
T Consensus 142 ~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 142 VQLENLQELLLSNNKIQA 159 (680)
T ss_dssp SCCTTCCEEECCSSCCCC
T ss_pred cccccCCEEEccCCcccc
Confidence 555555555555555443
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=3.3e-12 Score=85.22 Aligned_cols=67 Identities=24% Similarity=0.421 Sum_probs=34.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
.|..+++|++|++++|.+.+..+ ..|.++++|+.|++++|++ ....+..|..+++|+.|++++|.+.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred HhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCccc
Confidence 44555555555555555553223 4455555555555555555 2222234455555555555555554
No 70
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.36 E-value=4.1e-12 Score=87.35 Aligned_cols=93 Identities=23% Similarity=0.303 Sum_probs=75.1
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
|..|.++++|++|++++|.+.+..| ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.+.. .
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i--~~l~~~~~~~l~~L~~L~L~~n~l~~~~----~ 146 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESLYLGSNHISSIK----L 146 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCC--SCGGGSCCTTCTTCCEEECCSSCCCCCC----C
T ss_pred hhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCc--ccCCcchhccCCcccEEECCCCcccccC----c
Confidence 5678889999999999999985556 7888999999999999998 4544667888889999999999888643 3
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|++|++++|.+.+
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCE
T ss_pred ccccCCcccCEEEcccCcccc
Confidence 55558888888888887765
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=85.16 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=53.8
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|.++++|++|++++|.+. .+| .+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .
T Consensus 180 ~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 250 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIE----RNA 250 (440)
T ss_dssp TTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC----TTS
T ss_pred hhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCcc--CccChhhhccCccCCEEECCCCceeEEC----hhh
Confidence 4556667777777777666 343 355666666666666666 3444555666666666666666666544 4 5
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.+++
T Consensus 251 ~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp STTCTTCCEEECTTSCCCC
T ss_pred hcCCCCCCEEECCCCCCCc
Confidence 5566666666666665543
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=2.9e-12 Score=89.13 Aligned_cols=92 Identities=25% Similarity=0.304 Sum_probs=64.3
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|.++++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIK----NNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCC----SCT
T ss_pred HHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCCccCccC----hhH
Confidence 46677777777777777775545 6667777777777777777 3332335777777777777777777555 5 6
Q ss_pred cCCCCCCcEEEcCCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~~ 102 (104)
+..+++|++|++++|.+.+.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCC
T ss_pred ccccCCCCEEECCCCccccc
Confidence 77777777777777776654
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=9.2e-12 Score=83.33 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=56.9
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+++|++|++++|.+. ..| .+..+++|+.|++++|.+ ....+..|..+++|+.|++++|.+.+.. + .+
T Consensus 192 ~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 262 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIK-DMP--NLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIE----RNAF 262 (452)
T ss_dssp TTTCTTCCEEECTTSCCS-SCC--CCTTCTTCCEEECTTSCC--SEECGGGGTTCTTCCEEECTTSCCCEEC----TTTT
T ss_pred ccCCCCCCEEECCCCccc-ccc--cccccccccEEECcCCcC--cccCcccccCccCCCEEEeCCCcCceEC----HHHh
Confidence 555666666666666666 333 355666677777777766 4444566666777777777777766555 5 66
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|+.|++++|.+++
T Consensus 263 ~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TTCTTCCEEECCSSCCSC
T ss_pred cCCCCCCEEECCCCcCCc
Confidence 666777777777776654
No 74
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.9e-12 Score=91.41 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=78.2
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
++.+..+..|+.|++++|.+. .++ ..+..+++|+.|++++|.+ . .+|..+..+++|+.|++++|.++ .+ |
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N~l--~-~lp~~~~~l~~L~~L~Ls~N~l~-~l----p 286 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NIS-ANIFKYDFLTRLYLNGNSL--T-ELPAEIKNLSNLRVLDLSHNRLT-SL----P 286 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCC-GGGGGCCSCSCCBCTTSCC--S-CCCGGGGGGTTCCEEECTTSCCS-SC----C
T ss_pred hhhhccCCCCcEEECCCCCCC-CCC-hhhcCCCCCCEEEeeCCcC--c-ccChhhhCCCCCCEEeCcCCcCC-cc----C
Confidence 456788999999999999998 677 6777899999999999999 4 67888999999999999999999 66 8
Q ss_pred -ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+..+++|++|++++|.++ .+|
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCC
T ss_pred hhhcCCCCCCEEECCCCCCC-ccC
Confidence 8999999999999999886 443
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.1e-11 Score=83.94 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=77.1
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCc--hhhhhcCCCCCccEEeccCCcCCcccccccc--
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGS--KLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-- 81 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-- 81 (104)
..+++|++|++++|.+.+..| ..+..+++|+.|++++|++ .. ..|..+..+++|+.|++++|.+.+.. |
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l----~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDE----KKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCC--CBHHHHHHHHTTCTTCCEEECCSSCCBCCG----GGC
T ss_pred hhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCcc--CccccchHHHhhCCCCCEEECCCCcCCccc----ccc
Confidence 678999999999999997677 8889999999999999999 44 55677889999999999999998745 5
Q ss_pred ccCCCCCCcEEEcCCCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
.+..+++|+.|++++|.+++.+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGG
T ss_pred hhccCccCCEEECcCCCCCcch
Confidence 5778888888888888886543
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=90.47 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=70.6
Q ss_pred ccccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 2 FAEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
+..|..+++|++|++++|.....++...+..+++|+.|++++|.+ ....|..|..+++|+.|++++|.+.+.. +
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~n~l~~~~----~ 114 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAV----L 114 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC--CEECTTSSCSCSSCCCEECTTCCCSSCC----S
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC--cccCHhHccCCcccCEeeCcCCCCCccc----c
Confidence 456777888888888888554455326778888888888888888 5556777888888888888888887644 4
Q ss_pred -c--cCCCCCCcEEEcCCCCCCCC
Q 040978 82 -E--LHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 82 -~--~~~~~~L~~l~l~~n~~~~~ 102 (104)
. +..+++|++|++++|.+.+.
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCC
T ss_pred cCccccccCCCCEEECCCCccccc
Confidence 3 77888888888888887654
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.8e-12 Score=80.99 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=39.9
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTN 88 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~ 88 (104)
++++|++++|.+. ..+...+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... + .+..+++
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~ 125 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLS----SSWFKPLSS 125 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCC----HHHHTTCTT
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCC----HhHhCCCcc
Confidence 4555555555554 22213445555555555555555 2333334445555555555555554332 2 3445555
Q ss_pred CcEEEcCCCCCC
Q 040978 89 LEYLKLNDSPLH 100 (104)
Q Consensus 89 L~~l~l~~n~~~ 100 (104)
|++|++++|.+.
T Consensus 126 L~~L~L~~n~l~ 137 (353)
T 2z80_A 126 LTFLNLLGNPYK 137 (353)
T ss_dssp CSEEECTTCCCS
T ss_pred CCEEECCCCCCc
Confidence 555555555443
No 78
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.6e-12 Score=75.62 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCCCEEECCCCCCC-CccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccC
Q 040978 7 SFNNLELLDMSFNEIN-NLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELH 84 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~ 84 (104)
..+++++|++++|.+. +.+| ..+..+++|+.|++++|.+ ... ..+..+++|+.|++++|.+.+.. | .+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGL----DMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCC----CHHHH
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHH----HHHHh
Confidence 4578999999999997 5667 6778899999999999999 333 66888999999999999999766 7 777
Q ss_pred CCCCCcEEEcCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~ 101 (104)
.+++|++|++++|.+++
T Consensus 93 ~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp HCTTCCEEECBSSSCCS
T ss_pred hCCCCCEEeccCCccCc
Confidence 89999999999999876
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=8.5e-12 Score=84.48 Aligned_cols=87 Identities=29% Similarity=0.369 Sum_probs=42.4
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCc-ccccccc-
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTE-TVTITTQ- 81 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~- 81 (104)
.|..+++|++|++++|.+.+..| ..+..+++|++|++++|++ . ..|.. .+++|++|++++|.+.+ .. |
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~-~lp~~--~l~~L~~L~L~~N~l~~~~~----p~ 109 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKL--V-KISCH--PTVNLKHLDLSFNAFDALPI----CK 109 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCC--C-EEECC--CCCCCSEEECCSSCCSSCCC----CG
T ss_pred hccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCce--e-ecCcc--ccCCccEEeccCCccccccc----hh
Confidence 34445555555555555543333 4455555555555555555 2 23322 44555555555555543 23 4
Q ss_pred ccCCCCCCcEEEcCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~ 100 (104)
.++.+++|++|++++|.+.
T Consensus 110 ~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 110 EFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GGGGCTTCCEEEEEESSCC
T ss_pred hhccCCcceEEEecCcccc
Confidence 4555555555555555544
No 80
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=2.1e-11 Score=72.26 Aligned_cols=83 Identities=22% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTN 88 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~ 88 (104)
+.+.+++++|.+. .+| ..+ ..+++.|++++|++ ....+..|..+++|+.|++++|.+.+.. + .|..+++
T Consensus 10 ~~~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLP----AGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCC----TTTTTTCTT
T ss_pred CCCEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccC----hhhccCCCC
Confidence 4678999999998 677 554 37899999999999 5555778999999999999999999766 6 7899999
Q ss_pred CcEEEcCCCCCCCC
Q 040978 89 LEYLKLNDSPLHIS 102 (104)
Q Consensus 89 L~~l~l~~n~~~~~ 102 (104)
|++|++++|.+++.
T Consensus 80 L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 80 LTQLSLNDNQLKSI 93 (170)
T ss_dssp CCEEECCSSCCCCC
T ss_pred CCEEECCCCccCEe
Confidence 99999999998764
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.32 E-value=6.6e-12 Score=85.95 Aligned_cols=89 Identities=27% Similarity=0.365 Sum_probs=54.0
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc-cccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET-VTITTQ 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~ 81 (104)
..|..+++|++|++++|.+.+..| ..+..+++|++|++++|.+ ...|.. .+++|+.|++++|.+.+. . |
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l---~~lp~~--~l~~L~~L~Ls~N~l~~l~~----p 139 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRL---QNISCC--PMASLRHLDLSFNDFDVLPV----C 139 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCC---CEECSC--CCTTCSEEECCSSCCSBCCC----C
T ss_pred hhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcC---CccCcc--ccccCCEEECCCCCccccCc----h
Confidence 355666666666666666664334 5566666666666666666 233333 566666666666666542 2 3
Q ss_pred -ccCCCCCCcEEEcCCCCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|++|++++|.+.+
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCCT
T ss_pred HhhcccCcccEEecCCCcccc
Confidence 56666777777777666543
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=7.8e-13 Score=94.95 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=38.2
Q ss_pred ccccCCCCCCCEEECCCCCCCC-----------------ccccCccC--CCCCCCEEeCCCCcccCCchhhhhcCCCCCc
Q 040978 2 FAEFNSFNNLELLDMSFNEINN-----------------LVVPQGYS--GLRKLKSLDLSRVGVRDGSKLLQSMGSFPSL 62 (104)
Q Consensus 2 ~~~~~~~~~L~~L~l~~n~~~~-----------------~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L 62 (104)
|+.++++++|++|++++|.+.+ .+| ..+. .+++|+.|++++|.+ ....|..+..+++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPEL 517 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTT--CCSCCGGGGGCSSC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCC--CccChHHHhCCCCC
Confidence 4455555666666666665553 144 4444 555566666655555 34455555555555
Q ss_pred cEEeccCCc-CCc
Q 040978 63 NNLYLSSNN-FTE 74 (104)
Q Consensus 63 ~~l~l~~n~-~~~ 74 (104)
+.|++++|. +++
T Consensus 518 ~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 518 QSLNIACNRGISA 530 (876)
T ss_dssp CEEECTTCTTSCH
T ss_pred CEEECcCCCCccc
Confidence 555555555 444
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=5.7e-12 Score=80.82 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCch--hhhhc--CCCCCccEEeccCCcCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSK--LLQSM--GSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~--~~l~~L~~l~l~~n~~~ 73 (104)
++|++|++++|.+.+..+ ..+..+++|+.|++++|++ .+. .+..+ ..+++|+.|++++|.+.
T Consensus 149 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTT--CHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCc--CcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 444444444444443222 3444455555555555544 221 12222 34444555555555444
No 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=2.5e-11 Score=78.13 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=44.5
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTN 88 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~ 88 (104)
+|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+. .. | .+..+++
T Consensus 193 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~-~l----p~~l~~l~~ 264 (330)
T 1xku_A 193 SLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLV-KV----PGGLADHKY 264 (330)
T ss_dssp TCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCC--CEECTTTGGGSTTCCEEECCSSCCS-SC----CTTTTTCSS
T ss_pred cCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcC--ceeChhhccCCCCCCEEECCCCcCc-cC----ChhhccCCC
Confidence 34444444444442223 4455555555555555555 3333334555555666666666555 33 4 5566666
Q ss_pred CcEEEcCCCCCCC
Q 040978 89 LEYLKLNDSPLHI 101 (104)
Q Consensus 89 L~~l~l~~n~~~~ 101 (104)
|+++++++|.+++
T Consensus 265 L~~L~l~~N~i~~ 277 (330)
T 1xku_A 265 IQVVYLHNNNISA 277 (330)
T ss_dssp CCEEECCSSCCCC
T ss_pred cCEEECCCCcCCc
Confidence 6666666666654
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=80.23 Aligned_cols=87 Identities=24% Similarity=0.301 Sum_probs=64.5
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc--
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-- 81 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-- 81 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... .
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~ 143 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLG----ETS 143 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSSSC----SSC
T ss_pred HhccCCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcccC----chh
Confidence 57788888888888888885444 6688888888888888888 4433445778888888888888877543 2
Q ss_pred ccCCCCCCcEEEcCCC
Q 040978 82 ELHNFTNLEYLKLNDS 97 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n 97 (104)
.+..+++|++|++++|
T Consensus 144 ~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 144 LFSHLTKLQILRVGNM 159 (353)
T ss_dssp SCTTCTTCCEEEEEES
T ss_pred hhccCCCCcEEECCCC
Confidence 3566777777777766
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=1.5e-12 Score=83.50 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCCCCCEEECCCCCCCCccccCcc--CCCCCCCEEeCCCCcccCCchhhhhcCCC-----CCccEEeccCCcCCcccccc
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGY--SGLRKLKSLDLSRVGVRDGSKLLQSMGSF-----PSLNNLYLSSNNFTETVTIT 79 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~ 79 (104)
.+++|++|++++|.+.+..| ..+ ..+++|+.|++++|.+ ... |..+..+ ++|+.|++++|.+.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l--~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAP-PPLLEATGPDLNILNLRNVSW--ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS--- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCC-CCSSSCCSCCCSEEEEESCBC--SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC---
T ss_pred CcCCccEEEccCCcccchhH-HHHHHhcCCCccEEEccCCCC--cch-hHHHHHHHHhhcCCCcEEEeeCCCCccch---
Confidence 35555555555555554444 332 4455555555555555 222 2222222 44455555555444333
Q ss_pred cc-ccCCCCCCcEEEcCCCCC
Q 040978 80 TQ-ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 80 ~~-~~~~~~~L~~l~l~~n~~ 99 (104)
+ .+..+++|++|++++|.+
T Consensus 166 -~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 166 -CEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp -TTTCCCCSSCCEEECCSCTT
T ss_pred -HHHhccCCCCCEEECCCCCc
Confidence 3 444444444444444443
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=3.3e-11 Score=82.53 Aligned_cols=90 Identities=26% Similarity=0.290 Sum_probs=75.3
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCc--hhhhhcCCCCCccEEeccCCcCCcccccccc--
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGS--KLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-- 81 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-- 81 (104)
..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++ .. ..+..+..+++|+.|++++|.+.+.. |
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSLNSHA----YDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCC--CBTTHHHHTTTTCTTCCEEECTTSCCBSCC----SSC
T ss_pred cCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCc--CCcccchhhhcCCCCCCEEECCCCcCCCcc----Chh
Confidence 678999999999999997677 8889999999999999999 43 45567888999999999999998744 4
Q ss_pred ccCCCCCCcEEEcCCCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~~~ 102 (104)
.+..+++|+.+++++|.+++.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGG
T ss_pred hhcCcccCCEEECCCCCCCcc
Confidence 577788888888888887654
No 88
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=4e-11 Score=71.32 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCCC
Q 040978 11 LELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTNL 89 (104)
Q Consensus 11 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~L 89 (104)
-+.+++++|.+. .+| ..+. ++++.|++++|++ ....+..|..+++|+.|++++|.+++.. + .|..+++|
T Consensus 14 ~~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIP----TGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTC
T ss_pred CcEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccC----hhHhCCcchh
Confidence 468999999998 677 5553 7899999999999 5555778999999999999999999765 5 67899999
Q ss_pred cEEEcCCCCCCCC
Q 040978 90 EYLKLNDSPLHIS 102 (104)
Q Consensus 90 ~~l~l~~n~~~~~ 102 (104)
++|++++|.+.+-
T Consensus 84 ~~L~L~~N~l~~l 96 (174)
T 2r9u_A 84 TQLDLNDNHLKSI 96 (174)
T ss_dssp CEEECCSSCCCCC
T ss_pred hEEECCCCcccee
Confidence 9999999998763
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=1.7e-11 Score=79.04 Aligned_cols=87 Identities=22% Similarity=0.403 Sum_probs=49.9
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+ ...|..+. ++|+.|++++|.+.... + .
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l---~~l~~~~~--~~L~~L~l~~n~i~~~~----~~~ 142 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKNHL---VEIPPNLP--SSLVELRIHDNRIRKVP----KGV 142 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECCSSCC---CSCCSSCC--TTCCEEECCSSCCCCCC----SGG
T ss_pred HhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECCCCcC---CccCcccc--ccCCEEECCCCccCccC----HhH
Confidence 45555666666666666553334 5555566666666666655 22333222 45556666666555443 3 5
Q ss_pred cCCCCCCcEEEcCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|+.|++++|.+.
T Consensus 143 ~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GSSCSSCCEEECCSCCCB
T ss_pred hCCCccCCEEECCCCccc
Confidence 677777777777777764
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.29 E-value=2.4e-11 Score=78.20 Aligned_cols=89 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+ ...|..+..+++|+.+++++|.++... +
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~N~i~~~~----~~ 281 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNNNISAIG----SN 281 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCC---SSCCTTTTTCSSCCEEECCSSCCCCCC----TT
T ss_pred HHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcC---ccCChhhccCCCcCEEECCCCcCCccC----hh
Confidence 345555666666666666653323 4455556666666666665 244455555566666666666665433 2
Q ss_pred ccCC------CCCCcEEEcCCCCC
Q 040978 82 ELHN------FTNLEYLKLNDSPL 99 (104)
Q Consensus 82 ~~~~------~~~L~~l~l~~n~~ 99 (104)
.|.. ...++.+++.+|++
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hcCCcccccccccccceEeecCcc
Confidence 3321 24555666666654
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=1.3e-11 Score=73.29 Aligned_cols=82 Identities=27% Similarity=0.408 Sum_probs=48.2
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc--ccCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ--ELHNFT 87 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~ 87 (104)
+|++|++++|.+.+ . ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++|.+.... + .+..++
T Consensus 43 ~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~l~~l~ 113 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELG----DLDPLASLK 113 (176)
T ss_dssp CCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCCCCCGG----GGGGGGGCT
T ss_pred CCCEEECCCCCCCc-c--cccccCCCCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCcCCcch----hhHhhhcCC
Confidence 66666666666663 2 3455666666666666666 3222233355666666666666665332 2 455666
Q ss_pred CCcEEEcCCCCCC
Q 040978 88 NLEYLKLNDSPLH 100 (104)
Q Consensus 88 ~L~~l~l~~n~~~ 100 (104)
+|+.+++++|.+.
T Consensus 114 ~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 114 SLTYLCILRNPVT 126 (176)
T ss_dssp TCCEEECCSSGGG
T ss_pred CCCEEEecCCCCC
Confidence 6777777776654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=4.3e-12 Score=78.52 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=44.8
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCc-ccCCchhhhhcCCCCCccEEeccC-CcCCcccccccc-ccCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVG-VRDGSKLLQSMGSFPSLNNLYLSS-NNFTETVTITTQ-ELHNF 86 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~-~~~~~ 86 (104)
++++|++++|.+. .++...+..+++|+.|++++|. + ....+..|..+++|+.|++++ |.+.... + .|..+
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~----~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYID----PDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEEC----TTSEECC
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcC----HHHhCCC
Confidence 4556666666655 3331345555666666666654 5 222233455555666666655 5555443 3 45555
Q ss_pred CCCcEEEcCCCCCCC
Q 040978 87 TNLEYLKLNDSPLHI 101 (104)
Q Consensus 87 ~~L~~l~l~~n~~~~ 101 (104)
++|+.|++++|.+++
T Consensus 105 ~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM 119 (239)
T ss_dssp TTCCEEEEEEECCCS
T ss_pred CCCCEEeCCCCCCcc
Confidence 555555555555443
No 93
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=1.5e-11 Score=72.99 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=58.8
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCC-CCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGL-RKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
.+..+.+|++|++++|.+. .++ . +..+ ++|+.|++++|.+ .. . ..+..+++|+.|++++|.+.+.. +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l--~~-~-~~l~~l~~L~~L~Ls~N~l~~~~----~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEI--RK-L-DGFPLLRRLKTLLVNNNRICRIG----EG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCC--CE-E-CCCCCCSSCCEEECCSSCCCEEC----SC
T ss_pred hcCCcCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCC--Cc-c-cccccCCCCCEEECCCCcccccC----cc
Confidence 3456777788888888777 344 3 3333 3788888888877 33 2 45667777888888888777544 3
Q ss_pred ccCCCCCCcEEEcCCCCCC
Q 040978 82 ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 82 ~~~~~~~L~~l~l~~n~~~ 100 (104)
.+..+++|++|++++|.+.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV 101 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCC
Confidence 4477778888888887764
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=8.6e-12 Score=89.63 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=73.0
Q ss_pred ccccC--CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCc-ccCCc-hhhhhcCC-------CCCccEEeccCC
Q 040978 2 FAEFN--SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVG-VRDGS-KLLQSMGS-------FPSLNNLYLSSN 70 (104)
Q Consensus 2 ~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~-------l~~L~~l~l~~n 70 (104)
|+.++ .+++|++|++++|.+.+..| ..+..+++|+.|++++|+ + +. ..|..+.. +++|+.|++++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~l--sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI--SAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTS--CHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCc--ccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 55655 89999999999998887888 888899999999999997 7 45 56664443 448888888888
Q ss_pred cCCcccccccc--ccCCCCCCcEEEcCCCCCCCCCC
Q 040978 71 NFTETVTITTQ--ELHNFTNLEYLKLNDSPLHISLL 104 (104)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~ 104 (104)
.+.... . .+..+++|+.|++++|.+. .+|
T Consensus 559 ~L~~ip----~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 559 NLEEFP----ASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CCCBCC----CHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred cCCccC----ChhhhhcCCCCCEEECCCCCcc-cch
Confidence 888333 2 3678888888888888776 443
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.25 E-value=2.3e-11 Score=78.41 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=29.6
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+ ..+|..+..+++|+.+++++|.++
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKL---SRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCC---CBCCTTGGGCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcC---eecChhhhcCccCCEEECCCCCCC
Confidence 3444444444444444443222 3344444455555555444 233334444444555555555444
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.25 E-value=4.6e-12 Score=78.36 Aligned_cols=66 Identities=12% Similarity=0.253 Sum_probs=29.7
Q ss_pred ccCCCCCCCEEECCCCC-CCCccccCccCCCCCCCEEeCCC-CcccCCchhhhhcCCCCCccEEeccCCcC
Q 040978 4 EFNSFNNLELLDMSFNE-INNLVVPQGYSGLRKLKSLDLSR-VGVRDGSKLLQSMGSFPSLNNLYLSSNNF 72 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 72 (104)
.|..+++|++|++++|. +. .++...+..+++|+.|++++ |.+ ....+..|..+++|+.|++++|.+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l--~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNL--TYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTC--CEECTTSEECCTTCCEEEEEEECC
T ss_pred HccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCe--eEcCHHHhCCCCCCCEEeCCCCCC
Confidence 34445555555555554 44 22213444555555555554 444 222223344444444444444433
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=78.24 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCCCCccEEeccCCcCCcccccccc-ccCCC---CCCcEEEcCCCCCC
Q 040978 57 GSFPSLNNLYLSSNNFTETVTITTQ-ELHNF---TNLEYLKLNDSPLH 100 (104)
Q Consensus 57 ~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~---~~L~~l~l~~n~~~ 100 (104)
..+++|+.|++++|.+.+.. | .+..+ ++|++|++++|.++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATV----NPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hcCCCCCEEECCCCCCCccc----hhhHHhccCcCcCCEEECCCCCCC
Confidence 34455556666666555543 4 34333 46666666666555
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.24 E-value=5e-11 Score=77.02 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=56.0
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+ .. . ..+..+++|+.|++++|.+.+.. + .+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l--~~-~-~~~~~l~~L~~L~L~~n~l~~~~----~~~l 307 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQI--SD-I-SVLNNLSQLNSLFLNNNQLGNED----MEVI 307 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCC--CC-C-GGGGGCTTCSEEECCSSCCCGGG----HHHH
T ss_pred hhcCCCCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCcc--CC-C-hhhcCCCCCCEEECcCCcCCCcC----hhHh
Confidence 5666777777777777663 2 3456667777777777776 22 2 33556667777777777766555 5 56
Q ss_pred CCCCCCcEEEcCCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~~ 102 (104)
..+++|+.+++++|.+++.
T Consensus 308 ~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp HTCTTCSEEECCSSSCCCC
T ss_pred hccccCCEEEccCCccccc
Confidence 6677777777777766553
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.23 E-value=7.4e-11 Score=76.23 Aligned_cols=87 Identities=21% Similarity=0.434 Sum_probs=52.9
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL 83 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 83 (104)
.+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|.+ ....+..+..+++|+.+++++|.+++.. | +
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L~~n~l~~~~----~-~ 329 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQL--GNEDMEVIGGLTNLTTLFLSQNHITDIR----P-L 329 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCC--CGGGHHHHHTCTTCSEEECCSSSCCCCG----G-G
T ss_pred hHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcC--CCcChhHhhccccCCEEEccCCcccccc----C-h
Confidence 35566667777777766663 22 355666677777777666 4455555666666777777777666554 3 5
Q ss_pred CCCCCCcEEEcCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~ 100 (104)
..+++|+.+++++|.++
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 56666677777666654
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=1.4e-10 Score=72.91 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred cCCCCCccEEeccCCcCCccccccccccCCCCCCcEEEcCCCCCCC
Q 040978 56 MGSFPSLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 56 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCB
T ss_pred hcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcc
Confidence 555566666666666665332 45556666666666666544
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=1.1e-10 Score=74.31 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=29.3
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
+..+++|++|++++|.+. ..+ . +..+++|+.|++++|.+ .. . ..+..+++|+.|++++|.+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l--~~-~-~~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT-DIK-P-LANLKNLGWLFLDENKV--KD-L-SSLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCC--CC-G-GGGTTCTTCCEEECTTSCCC
T ss_pred HhcCCCCCEEEccCCccC-CCc-c-cccCCCCCEEECCCCcC--CC-C-hhhccCCCCCEEECCCCcCC
Confidence 344555555555555555 222 2 44555555555555554 11 1 12444444555555544444
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=9.2e-11 Score=73.80 Aligned_cols=85 Identities=29% Similarity=0.440 Sum_probs=55.8
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL 83 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 83 (104)
.+..+++|++|++++|.+. ..+ . +..+++|+.|++++|++ . ..+. +.. ++|+.|++++|.+.+.. .+
T Consensus 58 ~l~~l~~L~~L~L~~N~i~-~~~-~-l~~l~~L~~L~L~~N~l--~-~l~~-~~~-~~L~~L~L~~N~l~~~~-----~l 124 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQIS-DLS-P-LKDLTKLEELSVNRNRL--K-NLNG-IPS-ACLSRLFLDNNELRDTD-----SL 124 (263)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSSCC--S-CCTT-CCC-SSCCEEECCSSCCSBSG-----GG
T ss_pred HHhhCCCCCEEECCCCccC-CCh-h-hccCCCCCEEECCCCcc--C-CcCc-ccc-CcccEEEccCCccCCCh-----hh
Confidence 3556667777777777766 344 3 66667777777777776 2 2222 222 66777777777776432 57
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|+.|++++|.+++
T Consensus 125 ~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp TTCTTCCEEECTTSCCCB
T ss_pred cCcccccEEECCCCcCCC
Confidence 788888888888888765
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=1.3e-10 Score=74.59 Aligned_cols=84 Identities=25% Similarity=0.365 Sum_probs=43.0
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
+..+++|++|++++|.+. ..+ . +..+++|+.|++++|.+ .. . ..+..+++|+.|++++|.+.+.. .+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~-~~~-~-~~~l~~L~~L~L~~n~l--~~-~-~~~~~l~~L~~L~l~~n~l~~~~-----~l~ 126 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQIT-DLA-P-LKNLTKITELELSGNPL--KN-V-SAIAGLQSIKTLDLTSTQITDVT-----PLA 126 (308)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-G-GTTCCSCCEEECCSCCC--SC-C-GGGTTCTTCCEEECTTSCCCCCG-----GGT
T ss_pred hhccCCCCEEEccCCcCC-CCh-h-HccCCCCCEEEccCCcC--CC-c-hhhcCCCCCCEEECCCCCCCCch-----hhc
Confidence 445566666666666655 333 2 55555666666666655 22 2 23445555555555555554332 344
Q ss_pred CCCCCcEEEcCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLH 100 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~ 100 (104)
.+++|+.|++++|.++
T Consensus 127 ~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQIT 142 (308)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCccC
Confidence 4444444444444443
No 104
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=9e-11 Score=76.02 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CEEECCCC-CCCCccccCccCCCCCCCEEeCCC-CcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCCC
Q 040978 12 ELLDMSFN-EINNLVVPQGYSGLRKLKSLDLSR-VGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFTN 88 (104)
Q Consensus 12 ~~L~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~ 88 (104)
..++.+++ .+. .+| . +..+.+|+.|++++ |.+ ....+..|..+++|+.|++++|.+.+.. + .|..+++
T Consensus 11 ~~v~~~~~n~l~-~ip-~-l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLH-H-LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVA----PDAFHFTPR 81 (347)
T ss_dssp SCEECCSSCCCT-TTT-T-SCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEEC----TTGGGSCSC
T ss_pred CEEEcCCCCCCC-ccC-C-CCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeC----HHHhcCCcC
Confidence 35688887 788 688 6 89999999999996 999 5555578999999999999999999887 7 8999999
Q ss_pred CcEEEcCCCCCCCC
Q 040978 89 LEYLKLNDSPLHIS 102 (104)
Q Consensus 89 L~~l~l~~n~~~~~ 102 (104)
|+.|++++|.+++.
T Consensus 82 L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 82 LSRLNLSFNALESL 95 (347)
T ss_dssp CCEEECCSSCCSCC
T ss_pred CCEEeCCCCcccee
Confidence 99999999999863
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=1.3e-10 Score=74.01 Aligned_cols=62 Identities=31% Similarity=0.527 Sum_probs=30.2
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
+..+++|++|++++|.+. ..+ .+..+++|+.|++++|++ .. . ..+..+++|+.|++++|.+.
T Consensus 86 l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~i--~~-~-~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHNGI--SD-I-NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp GTTCTTCCEEECCSSCCC-CGG--GGTTCTTCCEEECTTSCC--CC-C-GGGGGCTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCCcCC-CCh--hhccCCCCCEEECCCCcC--CC-C-hhhcCCCCCCEEEccCCcCC
Confidence 445555555555555555 222 245555555555555555 11 1 22334444455555444444
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=7e-11 Score=81.52 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccCCCCCC
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELHNFTNL 89 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L 89 (104)
.|+.|++++|.+. .+| . +..+++|+.|++++|.+ ..+|..++.+++|+.|++++|.+++ + |.+..+++|
T Consensus 442 ~L~~L~Ls~n~l~-~lp-~-~~~l~~L~~L~Ls~N~l---~~lp~~~~~l~~L~~L~Ls~N~l~~-l----p~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLC-H-LEQLLLVTHLDLSHNRL---RALPPALAALRCLEVLQASDNALEN-V----DGVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCS-SCC-C-GGGGTTCCEEECCSSCC---CCCCGGGGGCTTCCEEECCSSCCCC-C----GGGTTCSSC
T ss_pred CceEEEecCCCCC-CCc-C-ccccccCcEeecCcccc---cccchhhhcCCCCCEEECCCCCCCC-C----cccCCCCCC
Confidence 5899999999999 567 5 89999999999999999 4678889999999999999999996 4 578899999
Q ss_pred cEEEcCCCCCCCCC
Q 040978 90 EYLKLNDSPLHISL 103 (104)
Q Consensus 90 ~~l~l~~n~~~~~~ 103 (104)
+.|++++|.+++..
T Consensus 511 ~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 511 QELLLCNNRLQQSA 524 (567)
T ss_dssp CEEECCSSCCCSSS
T ss_pred cEEECCCCCCCCCC
Confidence 99999999998763
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.20 E-value=1.7e-10 Score=74.03 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=7.2
Q ss_pred CCCCCCCEEECCCCCCC
Q 040978 6 NSFNNLELLDMSFNEIN 22 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~ 22 (104)
..+++|++|++++|.+.
T Consensus 82 ~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 82 KNLTKITELELSGNPLK 98 (308)
T ss_dssp TTCCSCCEEECCSCCCS
T ss_pred ccCCCCCEEEccCCcCC
Confidence 33444444444444443
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=4.2e-11 Score=76.66 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCC---CCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccc
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGL---RKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQE 82 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 82 (104)
..+++|++|++++|.+.+..| ..+..+ ++|+.|++++|++ . .+|..+. ++|+.|++++|.+++.. .
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l--~-~lp~~~~--~~L~~L~Ls~N~l~~~~-----~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGL--E-QVPKGLP--AKLRVLDLSSNRLNRAP-----Q 289 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCC--C-SCCSCCC--SCCSCEECCSCCCCSCC-----C
T ss_pred hcCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCC--C-chhhhhc--CCCCEEECCCCcCCCCc-----h
Confidence 445666666666666664444 444444 4666666666666 2 3444332 56666677666666432 3
Q ss_pred cCCCCCCcEEEcCCCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~~~ 101 (104)
+..+++|+.|++++|.++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 4556667777777776654
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=4.5e-11 Score=81.02 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=7.4
Q ss_pred CCCCCCCEEECCCCCCC
Q 040978 6 NSFNNLELLDMSFNEIN 22 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~ 22 (104)
..+++|++|++++|.+.
T Consensus 141 ~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEID 157 (487)
T ss_dssp GGGSSEEEEECTTSCCC
T ss_pred cCCCCCCEEECCCCCCC
Confidence 33444444444444444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=2.4e-10 Score=79.43 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=17.4
Q ss_pred cCCCCCccEEeccCCcCCccccccccccCCCCCCcEEEcCCCCCC
Q 040978 56 MGSFPSLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 56 ~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 100 (104)
+..+++|+.|++++|.+.+.. + +..+++|+.|++++|.++
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCC
T ss_pred hcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCCCC
Confidence 334444444444444444333 2 344444444444444443
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=2.2e-10 Score=73.61 Aligned_cols=83 Identities=28% Similarity=0.305 Sum_probs=51.6
Q ss_pred CCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCC
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
.+++|++|++++|.+. ..+ . ...+++|+.|++++|++ ...+..+..+++|+.|++++|.+. .. | .+..
T Consensus 167 ~l~~L~~L~L~~N~l~-~~~-~-~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~L~~L~L~~N~l~-~l----~~~~~~ 235 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIY-DVK-G-QVVFAKLKTLDLSSNKL---AFMGPEFQSAAGVTWISLRNNKLV-LI----EKALRF 235 (317)
T ss_dssp GTTTCCEEECTTSCCC-EEE-C-CCCCTTCCEEECCSSCC---CEECGGGGGGTTCSEEECTTSCCC-EE----CTTCCC
T ss_pred ccCcCCEEECCCCcCc-ccc-c-ccccccCCEEECCCCcC---CcchhhhcccCcccEEECcCCccc-ch----hhHhhc
Confidence 4556666666666665 222 1 22356666777777666 233444666677777777777776 34 5 6667
Q ss_pred CCCCcEEEcCCCCCC
Q 040978 86 FTNLEYLKLNDSPLH 100 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~ 100 (104)
+++|+.+++++|.+.
T Consensus 236 l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 236 SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred CCCCCEEEccCCCcc
Confidence 777777777777765
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=1.1e-10 Score=79.20 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcC-CCCCccEEeccCCcCCccccccccccCCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMG-SFPSLNNLYLSSNNFTETVTITTQELHNF 86 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~ 86 (104)
+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+ ....+..+. .+++|+.|++++|.+.+.. ....+
T Consensus 119 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-----~~~~l 190 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVK-----GQVVF 190 (487)
T ss_dssp CSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEE-----CCCCC
T ss_pred cCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCC--CCcChHHHhhhCCcccEEecCCCcccccc-----ccccC
Confidence 4566677777777765444 5666677777777777777 444444443 4566666666666665332 22235
Q ss_pred CCCcEEEcCCCCCCC
Q 040978 87 TNLEYLKLNDSPLHI 101 (104)
Q Consensus 87 ~~L~~l~l~~n~~~~ 101 (104)
++|+.|++++|.+++
T Consensus 191 ~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF 205 (487)
T ss_dssp TTCCEEECCSSCCCE
T ss_pred CCCCEEECCCCCCCC
Confidence 555555555555543
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.13 E-value=4.7e-10 Score=75.35 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=18.4
Q ss_pred CCCCccEEeccCCcCCccccccccccCCCCCCcEEEcCCCCCCC
Q 040978 58 SFPSLNNLYLSSNNFTETVTITTQELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 58 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+++|+.|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 329 ~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCB
T ss_pred cCccCCEeECCCCccCCch-----hhccCCCCCEEeCCCCccCc
Confidence 3444444444444444221 34455555555555555544
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=3.2e-10 Score=78.78 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=46.5
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
+..+++|+.|++++|.+. .. ..+..+++|+.|++++|.+ .. . ..+..+++|+.|++++|.+.+.. .+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~L~~L~Ls~N~l--~~-l-~~l~~l~~L~~L~Ls~N~l~~l~-----~l~ 150 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIK-DL--SSLKDLKKLKSLSLEHNGI--SD-I-NGLVHLPQLESLYLGNNKITDIT-----VLS 150 (605)
T ss_dssp GGGCTTCCEEECCSSCCC-CC--TTSTTCTTCCEEECTTSCC--CC-C-GGGGGCTTCSEEECCSSCCCCCG-----GGG
T ss_pred hccCCCCCEEECcCCCCC-CC--hhhccCCCCCEEEecCCCC--CC-C-ccccCCCccCEEECCCCccCCch-----hhc
Confidence 344444555555555444 22 2345555555555555555 22 1 23445566666666666655332 456
Q ss_pred CCCCCcEEEcCCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~~ 102 (104)
.+++|+.|++++|.+.+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SCTTCSEEECCSSCCCCC
T ss_pred ccCCCCEEECcCCcCCCc
Confidence 677777777777776653
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=5.2e-11 Score=76.57 Aligned_cols=87 Identities=23% Similarity=0.252 Sum_probs=45.0
Q ss_pred CCCCCCEEECCCCCCCCc-cccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCC-cCCcc-cccccc-c
Q 040978 7 SFNNLELLDMSFNEINNL-VVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSN-NFTET-VTITTQ-E 82 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~-~~~~~~-~ 82 (104)
.+++|++|++++|.+.+. .+ ..+..+++|+.|++++|.+ ....+..+..+++|+.|++++| .+++. . + .
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l----~~~ 163 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFAL----QTL 163 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSCCHHHH----HHH
T ss_pred cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCccc--CHHHHHHHhcCCCCCEEECCCCCCCCHHHH----HHH
Confidence 445555666655555432 33 3445555566666655555 3444455555555566666555 34431 2 3 3
Q ss_pred cCCCCCCcEEEcCCC-CCC
Q 040978 83 LHNFTNLEYLKLNDS-PLH 100 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n-~~~ 100 (104)
+..+++|++|++++| .++
T Consensus 164 ~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHCTTCCEEECCCCTTCC
T ss_pred HhcCCCCCEEcCCCCCCcC
Confidence 445555555555555 443
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.09 E-value=6.1e-11 Score=77.85 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=61.1
Q ss_pred ccCCCCCCCEEECCCCCCC----CccccCccCCCCCCCEEeCCCCcccCCch----hhhhc--CCCCCccEEeccCCcCC
Q 040978 4 EFNSFNNLELLDMSFNEIN----NLVVPQGYSGLRKLKSLDLSRVGVRDGSK----LLQSM--GSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~--~~l~~L~~l~l~~n~~~ 73 (104)
.+..+++|++|++++|.+. ..++ ..+..+++|+.|++++|.+ ... ++..+ ..+++|+.|++++|.+.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLL--SARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCC--CHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCC--chhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 4566777777777777774 2445 5566677777777777777 333 33444 33677778888777777
Q ss_pred c----ccccccc-cc-CCCCCCcEEEcCCCCCCCC
Q 040978 74 E----TVTITTQ-EL-HNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 74 ~----~~~~~~~-~~-~~~~~L~~l~l~~n~~~~~ 102 (104)
+ .. + .+ ..+++|+.|++++|.+++.
T Consensus 288 ~~g~~~l----~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 288 LDAVRTL----KTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHH----HHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHH----HHHHHhcCCCceEEEccCCcCCcc
Confidence 5 24 5 44 5577888888888877664
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.06 E-value=1.5e-09 Score=72.91 Aligned_cols=38 Identities=39% Similarity=0.543 Sum_probs=16.2
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
..+++|++|++++|.+.+ .+ . +..+++|+.|++++|.+
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISN-LA-P-LSGLTKLTELKLGANQI 277 (466)
T ss_dssp GGCTTCSEEECCSSCCCC-CG-G-GTTCTTCSEEECCSSCC
T ss_pred hcCCCCCEEECCCCcccc-ch-h-hhcCCCCCEEECCCCcc
Confidence 334444444444444442 11 1 33444444444444444
No 118
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.06 E-value=4.5e-10 Score=72.15 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=39.8
Q ss_pred CCCCCCCEEECCCCCCCCccccCcc-CCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccC
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGY-SGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
..+++|++|++++|.+.+..+ ..+ ..+++|+.|++++|.+ .. .+. ...+++|+.|++++|.+.+.. +.+.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l--~~-~~~-~~~l~~L~~L~Ls~N~l~~l~----~~~~ 211 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFI--YD-VKG-QVVFAKLKTLDLSSNKLAFMG----PEFQ 211 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCC--CE-EEC-CCCCTTCCEEECCSSCCCEEC----GGGG
T ss_pred hccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcC--cc-ccc-ccccccCCEEECCCCcCCcch----hhhc
Confidence 334444444554444443222 222 2344455555555544 11 111 222455555555555555321 1555
Q ss_pred CCCCCcEEEcCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLH 100 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~ 100 (104)
.+++|+.|++++|.++
T Consensus 212 ~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV 227 (317)
T ss_dssp GGTTCSEEECTTSCCC
T ss_pred ccCcccEEECcCCccc
Confidence 5666666666666554
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=5.4e-10 Score=72.69 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=66.9
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhh-hhcCCCCCccE-EeccCCcCCcccccccc-ccCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLL-QSMGSFPSLNN-LYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~l~~L~~-l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
+++++|++++|.++ .+|...|.++++|+.|++++|.+ .+..+ ..|..++++.. +.+..|++.... + .|..
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i--~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~----~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEKANNLLYIN----PEAFQN 102 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTT--CCEECTTSBCSCTTCCEEEEEEETTCCEEC----TTSBCC
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCC--CCccChhHhhcchhhhhhhcccCCcccccC----chhhhh
Confidence 57899999999998 56635788999999999999987 34343 46777877665 555668888666 6 7888
Q ss_pred CCCCcEEEcCCCCCCC
Q 040978 86 FTNLEYLKLNDSPLHI 101 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~~ 101 (104)
+++|+++++++|.+.+
T Consensus 103 l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKH 118 (350)
T ss_dssp CTTCCEEEEEEECCSS
T ss_pred cccccccccccccccc
Confidence 9999999999888765
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.00 E-value=3.4e-09 Score=71.34 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=42.3
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccccccccC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQELH 84 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 84 (104)
+..+++|++|++++|.+.+ .+ +..+++|+.|++++|.+ .. .+ +..+++|+.|++++|.+.+ . .+.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l--~~-~~--~~~l~~L~~L~L~~N~l~~-l-----~~~ 124 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKL--TN-LD--VTPLTKLTYLNCDTNKLTK-L-----DVS 124 (457)
T ss_dssp GGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC--SC-CC--CTTCTTCCEEECCSSCCSC-C-----CCT
T ss_pred hcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCC--ce-ee--cCCCCcCCEEECCCCcCCe-e-----cCC
Confidence 4455555666666555552 22 44555555666655555 22 11 4455555666665555553 2 144
Q ss_pred CCCCCcEEEcCCCCCCC
Q 040978 85 NFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 85 ~~~~L~~l~l~~n~~~~ 101 (104)
.+++|++|++++|.+++
T Consensus 125 ~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTE 141 (457)
T ss_dssp TCTTCCEEECTTSCCSC
T ss_pred CCCcCCEEECCCCccce
Confidence 55555555555555443
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.99 E-value=6.1e-10 Score=71.58 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCch-hhhhcCCCCCccEEeccCCcCCcccccccc-ccCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSK-LLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNF 86 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~ 86 (104)
++++.+++++|.+.+..+ .+..+++|+.|++++|.+ ... .+..+..+++|+.|++++|.+.+.. + .+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l--~~~~~~~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRLSDPI----VNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBCCHHH----HHHHTTC
T ss_pred ccceEEEcCCccccccch--hhccCCCCCEEEccCCCc--CHHHHHHHHhhCCCCCEEeCcCcccCHHH----HHHHhcC
Confidence 789999999999885544 466789999999999998 544 6778889999999999999998776 7 88899
Q ss_pred CCCcEEEcCCC-CCCC
Q 040978 87 TNLEYLKLNDS-PLHI 101 (104)
Q Consensus 87 ~~L~~l~l~~n-~~~~ 101 (104)
++|++|++++| .+++
T Consensus 142 ~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSE 157 (336)
T ss_dssp TTCSEEECTTCBSCCH
T ss_pred CCCCEEECCCCCCCCH
Confidence 99999999999 5653
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=2.2e-10 Score=75.18 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=58.9
Q ss_pred ccCCCCCCCEEECCCCCCCCc-----cccCccCCCCCCCEEeCCCCcccCC----chhhhhcCCCCCccEEeccCCcCCc
Q 040978 4 EFNSFNNLELLDMSFNEINNL-----VVPQGYSGLRKLKSLDLSRVGVRDG----SKLLQSMGSFPSLNNLYLSSNNFTE 74 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~l~~L~~l~l~~n~~~~ 74 (104)
.+..+++|++|++++|.+... .+ ..+..+++|+.|++++|.+ + ...+..+..+++|+.|++++|.+.+
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~l--~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTF--THLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSSCC--HHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHH-HHhhcCCCccEEECcCCCC--CcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 344566777777777776621 22 2556677777777777777 3 3345566677777777777777765
Q ss_pred ccccccc-cc--CCCCCCcEEEcCCCCCCC
Q 040978 75 TVTITTQ-EL--HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 75 ~~~~~~~-~~--~~~~~L~~l~l~~n~~~~ 101 (104)
.....++ .+ ..+++|+.|++++|.+++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 4100003 44 337777778887777654
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=8.6e-13 Score=79.74 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=48.1
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhh----------------------cCCCCC
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQS----------------------MGSFPS 61 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----------------------~~~l~~ 61 (104)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+ . .+|.. +..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l--~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLI--K-KIENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEE--C-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCc--c-cccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 45556666666666666652 32 444455555555555555 1 22322 333445
Q ss_pred ccEEeccCCcCCcccccccc--ccCCCCCCcEEEcCCCCCCC
Q 040978 62 LNNLYLSSNNFTETVTITTQ--ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 62 L~~l~l~~n~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~ 101 (104)
|+.|++++|.+.+.. + .+..+++|+++++++|.+.+
T Consensus 117 L~~L~l~~N~i~~~~----~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWG----EIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHH----HHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchh----HHHHHhcCCCCCEEEecCCcccc
Confidence 555555555555322 2 45667777777777776543
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=4.7e-13 Score=80.91 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=61.7
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchh-hhhcCCCCCccEEeccCCcCCcccccccc--
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKL-LQSMGSFPSLNNLYLSSNNFTETVTITTQ-- 81 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-- 81 (104)
+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|.+ .... ...+..+++|+.+++++|.+.+.. |
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i--~~~~~~~~l~~l~~L~~L~l~~N~l~~~~----~~~ 159 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDY----KEN 159 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEEC--CCHHHHHHHTTTTTCSEEEECSCHHHHHH----HTT
T ss_pred hhcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcC--CchhHHHHHhcCCCCCEEEecCCcccccc----ccc
Confidence 3445667777777777763 33 456677888888888888 3322 246888999999999999997654 3
Q ss_pred ---------ccCCCCCCcEEEcCCCCCCC
Q 040978 82 ---------ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 82 ---------~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+..+++|+.++ +|.++.
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 277899999887 565543
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=2e-09 Score=72.53 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=71.9
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccccc
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQEL 83 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 83 (104)
.++.+++|++|++++|.+.+ .| .+..+++|+.|++++|.+ .. .+ +..+++|+.|++++|.+.+. .+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l--~~-~~--~~~l~~L~~L~Ls~N~l~~~------~~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNI--TT-LD--LSQNTNLTYLACDSNKLTNL------DV 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCC--SC-CC--CTTCTTCSEEECCSSCCSCC------CC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcC--Ce-Ec--cccCCCCCEEECcCCCCcee------ec
Confidence 45678999999999999984 44 588899999999999999 33 33 78899999999999999853 37
Q ss_pred CCCCCCcEEEcCCCCCCC
Q 040978 84 HNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 84 ~~~~~L~~l~l~~n~~~~ 101 (104)
..+++|++|++++|.+++
T Consensus 103 ~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCEEECCCCcCCe
Confidence 789999999999999876
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=1.3e-09 Score=75.34 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=53.8
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCc-------cEEeccCCcCCccccccc
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSL-------NNLYLSSNNFTETVTITT 80 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L-------~~l~l~~n~~~~~~~~~~ 80 (104)
+++|++|++++|.+. .+| . +. ++|+.|++++|++ ..+|. +.. +| +.|++++|.++. +
T Consensus 159 l~~L~~L~Ls~N~L~-~lp-~-l~--~~L~~L~Ls~N~L---~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-l---- 222 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLT-FLP-E-LP--ESLEALDVSTNLL---ESLPA-VPV--RNHHSEETEIFFRCRENRITH-I---- 222 (571)
T ss_dssp CTTCCEEECCSSCCS-CCC-C-CC--TTCCEEECCSSCC---SSCCC-CC----------CCEEEECCSSCCCC-C----
T ss_pred CCCcCEEECCCCCCC-Ccc-h-hh--CCCCEEECcCCCC---Cchhh-HHH--hhhcccccceEEecCCCccee-c----
Confidence 456667777777666 355 3 43 6677777777777 23444 332 55 888888888873 4
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
| .+..+++|+.|++++|.+++.+
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcC
Confidence 6 6667999999999999987654
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.91 E-value=2.7e-10 Score=74.34 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCCC-CCCEEECCCCCCCCccccCccCCC-----CCCCEEeCCCCcccCCchhhh----hcCCC-CCccEEeccCCcCCc
Q 040978 6 NSFN-NLELLDMSFNEINNLVVPQGYSGL-----RKLKSLDLSRVGVRDGSKLLQ----SMGSF-PSLNNLYLSSNNFTE 74 (104)
Q Consensus 6 ~~~~-~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~----~~~~l-~~L~~l~l~~n~~~~ 74 (104)
..++ +|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+ ....+. .+..+ ++|+.|++++|.+.+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGNFL--SYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCCcC--ChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 3344 45555555555443222 222222 4455555555554 222222 12222 455555555555543
Q ss_pred ccccccc-c----cCC-CCCCcEEEcCCCCCC
Q 040978 75 TVTITTQ-E----LHN-FTNLEYLKLNDSPLH 100 (104)
Q Consensus 75 ~~~~~~~-~----~~~-~~~L~~l~l~~n~~~ 100 (104)
.. + . +.. .++|++|++++|.+.
T Consensus 124 ~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 124 KS----SSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp SC----HHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HH----HHHHHHHHHhCCCceeEEEccCCcCC
Confidence 32 2 1 222 245566666655554
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.85 E-value=5.9e-09 Score=72.75 Aligned_cols=78 Identities=22% Similarity=0.183 Sum_probs=56.1
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-ccCCCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-ELHNFT 87 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~~~~~ 87 (104)
++|+.|++++|.+. .+| ..+++|+.|++++|.+ ..+|. .+++|+.|++++|.+. .+ | .+..++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L---~~lp~---~~~~L~~L~Ls~N~L~-~l----p~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRL---TSLPM---LPSGLLSLSVYRNQLT-RL----PESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCC---SCCCC---CCTTCCEEECCSSCCC-SC----CGGGGGSC
T ss_pred CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCC---CcCCc---ccccCcEEeCCCCCCC-cC----CHHHhhcc
Confidence 55666666666666 333 3346677777777777 23333 4567888888888888 55 7 888999
Q ss_pred CCcEEEcCCCCCCCC
Q 040978 88 NLEYLKLNDSPLHIS 102 (104)
Q Consensus 88 ~L~~l~l~~n~~~~~ 102 (104)
+|+.|++++|.+++.
T Consensus 285 ~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 285 SETTVNLEGNPLSER 299 (622)
T ss_dssp TTCEEECCSCCCCHH
T ss_pred ccCEEEecCCCCCCc
Confidence 999999999998764
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.84 E-value=3.5e-10 Score=73.81 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCCCEEECCCCCCCCcccc----CccCCCC-CCCEEeCCCCcccCCchhhhhcCCC-----CCccEEeccCCcCCccccc
Q 040978 9 NNLELLDMSFNEINNLVVP----QGYSGLR-KLKSLDLSRVGVRDGSKLLQSMGSF-----PSLNNLYLSSNNFTETVTI 78 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~ 78 (104)
.+|++|++++|.+.+ .+. ..+..++ +|+.|++++|.+ ....+..+..+ ++|+.|++++|.+.+..
T Consensus 22 ~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-- 96 (362)
T 3goz_A 22 HGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKS-- 96 (362)
T ss_dssp TTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--
T ss_pred CCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHH--
Confidence 335555555555552 221 1233444 555555555555 23222222221 55555555555555332
Q ss_pred ccc-c----cCCC-CCCcEEEcCCCCCC
Q 040978 79 TTQ-E----LHNF-TNLEYLKLNDSPLH 100 (104)
Q Consensus 79 ~~~-~----~~~~-~~L~~l~l~~n~~~ 100 (104)
+ . +..+ ++|+.|++++|.++
T Consensus 97 --~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 97 --SDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp --HHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred --HHHHHHHHHhCCCCccEEECcCCcCC
Confidence 2 1 2233 45555555555543
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=4.2e-08 Score=66.04 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=28.0
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
++.+++|++|++++|.+. .+| .. ..+|+.|++++|.+ .. .| .+..+++|+.+++++|.+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~-~lp-~~---~~~L~~L~L~~n~l--~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLK-KLP-DL---PPSLEFIAAGNNQL--EE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCTTCCEEECCSSCCS-CCC-CC---CTTCCEEECCSSCC--SS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCCCEEECCCCcCc-ccC-CC---cccccEEECcCCcC--Cc-Cc-cccCCCCCCEEECCCCcCC
Confidence 445555555555555554 233 21 12455555555554 11 22 3444555555555555444
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.80 E-value=7.7e-09 Score=67.24 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=56.5
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCE-EeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKS-LDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTET 75 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 75 (104)
..|.++++|++|++++|.+.+.++...|.++++++. +.+..|++ ....+..|..+++|+.+++++|.+...
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l--~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC--CEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc--cccCchhhhhccccccccccccccccC
Confidence 368899999999999999875666456788888775 45566788 455567888999999999999988754
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=4.8e-08 Score=67.61 Aligned_cols=55 Identities=24% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
+++|++|++++|.+.+ +| . +.. +|+.|++++|.+ .. +|. .+++|+.|++++|.++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip-~-l~~--~L~~L~Ls~N~l--~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LP-E-LPA--SLKHLDVDNNQL--TM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CTTCCEEECCSSCCSC-CC-C-CCT--TCCEEECCSSCC--SC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCCCEEEccCCCCCC-cc-h-hhc--CCCEEECCCCcC--CC-CCC---cCccccEEeCCCCccC
Confidence 3444555555554442 33 2 222 444555555444 11 222 2344455555555444
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.77 E-value=2.7e-09 Score=71.15 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=46.2
Q ss_pred CCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCCchhhhhc----CC-CCCccEEeccCCcCCc----cc
Q 040978 10 NLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSM----GS-FPSLNNLYLSSNNFTE----TV 76 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~----~~-l~~L~~l~l~~n~~~~----~~ 76 (104)
+|++|++++|.+.+. .+ ..+..+++|+.|++++|.+ ....+..+ .. .++|+.|++++|.+++ ..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRL--EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHH-HHHHHCSSCCEEECCSSBC--HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHH-HHHhhCCCccEEEccCCcc--ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 445555555544422 12 2233446666666666666 33222222 11 4567777777776664 33
Q ss_pred ccccc-ccCCCCCCcEEEcCCCCCCC
Q 040978 77 TITTQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 77 ~~~~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
+ .+..+++|+++++++|.+++
T Consensus 391 ----~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 391 ----AATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ----HHHHHHCCCCCEEECCSSSCCH
T ss_pred ----HHHHHhCCCccEEECCCCCCCH
Confidence 4 55667777777777777653
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=4e-08 Score=63.31 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCcc-EEeccCCcCCcccccccc-ccCC
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLN-NLYLSSNNFTETVTITTQ-ELHN 85 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~-~~~~ 85 (104)
+++|+.+++++|.+. .++...|.++.+|+.+++..+ + .......|..+.+|+ .+.+.. .+.... + .|..
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLAGTLELPA-SVTAIE----FGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEEECT-TCCEEC----TTTTTT
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-c--ceehHHHhhCChhccEEEEEcc-cceEEc----hhhhhC
Confidence 789999999999888 566478999999999999987 6 455566788999999 999987 666454 5 8999
Q ss_pred CCCCcEEEcCCCCCC
Q 040978 86 FTNLEYLKLNDSPLH 100 (104)
Q Consensus 86 ~~~L~~l~l~~n~~~ 100 (104)
|++|+.+++.+|.+.
T Consensus 296 c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 296 CDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTEEEEEECSSCCC
T ss_pred CccCCEEEeCCCccC
Confidence 999999999877654
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.75 E-value=1.5e-08 Score=68.21 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCc--ccccccc-ccCC
Q 040978 9 NNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTE--TVTITTQ-ELHN 85 (104)
Q Consensus 9 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~-~~~~ 85 (104)
++|++|++++|.+. .+| . .+++|+.|++++|.+ . ..|. .+++|+.+++++|.+.+ .. | .+..
T Consensus 317 ~~L~~L~Ls~N~l~-~lp-~---~~~~L~~L~L~~N~l--~-~lp~---~l~~L~~L~L~~N~l~~l~~i----p~~l~~ 381 (454)
T 1jl5_A 317 PSLEELNVSNNKLI-ELP-A---LPPRLERLIASFNHL--A-EVPE---LPQNLKQLHVEYNPLREFPDI----PESVED 381 (454)
T ss_dssp TTCCEEECCSSCCS-CCC-C---CCTTCCEEECCSSCC--S-CCCC---CCTTCCEEECCSSCCSSCCCC----CTTCCE
T ss_pred CcCCEEECCCCccc-ccc-c---cCCcCCEEECCCCcc--c-cccc---hhhhccEEECCCCCCCcCCCC----hHHHHh
Confidence 36666677666666 344 2 246677777777777 2 3444 35678888888888776 44 5 5555
Q ss_pred C-------------CCCcEEEcCCCCCCC
Q 040978 86 F-------------TNLEYLKLNDSPLHI 101 (104)
Q Consensus 86 ~-------------~~L~~l~l~~n~~~~ 101 (104)
+ ++|+.|++++|.+.+
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EECCC------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCc
Confidence 5 678888888888776
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.71 E-value=3.8e-09 Score=70.37 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=34.3
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCcc-CCCC----CCCEEeCCCCcccCC--chhhhhcCCCCCccEEeccCCcCC
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGY-SGLR----KLKSLDLSRVGVRDG--SKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~----~L~~l~l~~~~~~~~--~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
.+..+++|++|++++|.+.+..+ ..+ ..+. +|+.|++++|.+++. ...+..+..+++|+.|++++|.+.
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGV-HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHH-HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhCCCcCEEeCCCCcCChHHH-HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 34455666666666666553211 111 1222 466666666665110 123445555666666666666554
No 137
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=1.2e-08 Score=60.90 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=65.5
Q ss_pred CCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCc-ccCCchhhhhcCCC----CCccEEeccCCc-CCcccccccc
Q 040978 8 FNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVG-VRDGSKLLQSMGSF----PSLNNLYLSSNN-FTETVTITTQ 81 (104)
Q Consensus 8 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~~~~~~ 81 (104)
--.|+.||+++|.+++..- ..+.++++|+.|++++|. + ++..-..+..+ ++|+.|++++|. +++.- -
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~I--tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G----l 132 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYI--EDGCLERLSQLENLQKSMLEMEIISCGNVTDKG----I 132 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTC--CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH----H
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCcc--CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH----H
Confidence 3469999999999985544 677899999999999994 7 44444455553 479999999985 77443 2
Q ss_pred -ccCCCCCCcEEEcCCCC
Q 040978 82 -ELHNFTNLEYLKLNDSP 98 (104)
Q Consensus 82 -~~~~~~~L~~l~l~~n~ 98 (104)
.+..+++|+.|++++++
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 66789999999999975
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.4e-07 Score=60.83 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=70.2
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCC-EEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLK-SLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 81 (104)
..|.+|.+|+.+++..| +. .++...|.++.+|+ .+++.. .+ ....+..|..+++|+.+++..|.+.... +
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l--~~I~~~aF~~c~~L~~l~l~~n~i~~I~----~ 314 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SV--TAIEFGAFMGCDNLRYVLATGDKITTLG----D 314 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TC--CEECTTTTTTCTTEEEEEECSSCCCEEC----T
T ss_pred hhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cc--eEEchhhhhCCccCCEEEeCCCccCccc----h
Confidence 35889999999999998 66 45547899999999 999998 66 4555678999999999999999998666 6
Q ss_pred -ccCCCCCCcEEEc
Q 040978 82 -ELHNFTNLEYLKL 94 (104)
Q Consensus 82 -~~~~~~~L~~l~l 94 (104)
.|..+++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 8999999998874
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=7.4e-08 Score=60.99 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=49.5
Q ss_pred CCCCCCEEECCCCCCCCc--cccCccCCCCCCCEEeCCCCcccCCch-hhhhcCCCCCccEEeccCCcCCccccc---cc
Q 040978 7 SFNNLELLDMSFNEINNL--VVPQGYSGLRKLKSLDLSRVGVRDGSK-LLQSMGSFPSLNNLYLSSNNFTETVTI---TT 80 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~---~~ 80 (104)
.+++|+.|++++|.+.+. ++ ..+..+++|+.|++++|+++ .. ....+..+ .|+.|++.+|.+.+.... -.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~--~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELK--SERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCC--SGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccC--CchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 467788888888887742 22 33446777888888888772 22 12233334 777888888877643200 00
Q ss_pred c-ccCCCCCCcEEE
Q 040978 81 Q-ELHNFTNLEYLK 93 (104)
Q Consensus 81 ~-~~~~~~~L~~l~ 93 (104)
. .+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1 345677777665
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.7e-08 Score=66.47 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCCCCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCCch----hhhhcCCCCCccEEeccCCcCCccccc
Q 040978 7 SFNNLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSK----LLQSMGSFPSLNNLYLSSNNFTETVTI 78 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~ 78 (104)
..++|+.|++++|.+.+. +. ..+...++|+.|++++|.+ ... +...+...++|+.|++++|.+++....
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l--~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGL--GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSC--HHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCC--CcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 356788888888887632 22 2335567788888888887 332 234555667888888888888743200
Q ss_pred ccc-ccCCCCCCcEEEcCCCCCCC
Q 040978 79 TTQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 79 ~~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
.+. .+...++|++|++++|.++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 002 44566788888888888753
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=7.8e-08 Score=60.89 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=53.0
Q ss_pred CCCCCCCEEeCCCCcccCCc--hhhhhcCCCCCccEEeccCCcCCcccccccc--ccCCCCCCcEEEcCCCCCCCCC
Q 040978 31 SGLRKLKSLDLSRVGVRDGS--KLLQSMGSFPSLNNLYLSSNNFTETVTITTQ--ELHNFTNLEYLKLNDSPLHISL 103 (104)
Q Consensus 31 ~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~ 103 (104)
..+++|+.|++++|++ .. .++..+..+++|+.|++++|.+.+.. . .+..+ +|+.|++.+|++.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l--~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----~l~~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL--YRLDDMSSIVQKAPNLKILNLSGNELKSER----ELDKIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCC--CCCGGGTTHHHHSTTCCEEECTTSCCCSGG----GGGGGTTS-CCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCC--CCCccchhHHhhCCCCCEEECCCCccCCch----hhhhcccC-CcceEEccCCcCcccc
Confidence 3578999999999999 44 44556678999999999999999664 2 44455 9999999999998743
No 142
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.61 E-value=2.4e-07 Score=64.71 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=5.9
Q ss_pred CCCCEEECCCCCCC
Q 040978 9 NNLELLDMSFNEIN 22 (104)
Q Consensus 9 ~~L~~L~l~~n~~~ 22 (104)
++|++|++++|.+.
T Consensus 81 ~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 81 PELRTLEVSGNQLT 94 (622)
T ss_dssp TTCCEEEECSCCCS
T ss_pred CCCCEEEcCCCcCC
Confidence 34444444444443
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.54 E-value=8.8e-09 Score=70.55 Aligned_cols=92 Identities=15% Similarity=0.238 Sum_probs=60.9
Q ss_pred cCCCCCCCEEECCCCC--CCCccccCcc-CCCCCCCEEeCCCCcccCCc-hhhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 5 FNSFNNLELLDMSFNE--INNLVVPQGY-SGLRKLKSLDLSRVGVRDGS-KLLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+..+++|++|++++|. +.+... ..+ ..+++|+.|++++|.+ +. ..+..+..+++|+.|++++|.+++.. +
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~ 505 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGE--SDEGLMEFSRGCPNLQKLEMRGCCFSERA---I 505 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCCS--SHHHHHHHHTCCTTCCEEEEESCCCBHHH---H
T ss_pred HHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCCC--CHHHHHHHHhcCcccCeeeccCCCCcHHH---H
Confidence 3446777777776543 342222 222 2367788888888888 43 33445677888999999998876442 0
Q ss_pred c-ccCCCCCCcEEEcCCCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLHIS 102 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~~~ 102 (104)
+ ....+++|+.|++++|.++..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCccCeeECcCCcCCHH
Confidence 3 445788899999999887654
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=9.3e-08 Score=57.21 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=53.1
Q ss_pred cCCCCCCCEEECCCC-CCCCc----cccCccCCCCCCCEEeCCCCcccCCchh----hhhcCCCCCccEEeccCCcCCcc
Q 040978 5 FNSFNNLELLDMSFN-EINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSKL----LQSMGSFPSLNNLYLSSNNFTET 75 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~l~~L~~l~l~~n~~~~~ 75 (104)
+...++|++|++++| .+.+. +. ..+...++|+.|++++|.+ .... ...+...++|+.|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i--~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRS--NDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCC--CHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCC--ChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 455677777777777 66532 12 2344456677777777777 3322 22333446677777777777642
Q ss_pred cccccc-ccCCCCCCcEEEc--CCCCCC
Q 040978 76 VTITTQ-ELHNFTNLEYLKL--NDSPLH 100 (104)
Q Consensus 76 ~~~~~~-~~~~~~~L~~l~l--~~n~~~ 100 (104)
.-..+. .+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 100002 4555666777777 666654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=3.7e-08 Score=58.98 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred cccCCCCCCCEEECCCCCCCCcc----ccCccCCCCCCCEEeCCCCcccCCch----hhhhcCCCCCccEEec--cCCcC
Q 040978 3 AEFNSFNNLELLDMSFNEINNLV----VPQGYSGLRKLKSLDLSRVGVRDGSK----LLQSMGSFPSLNNLYL--SSNNF 72 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~l~~L~~l~l--~~n~~ 72 (104)
..+...++|++|++++|.+.+.. . ..+...++|+.|++++|.+ ... +...+....+|+.|++ ++|.+
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~-~~L~~n~~L~~L~L~~N~i--~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALA-EMLKVNNTLKSLNVESNFI--SGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHH-HHHHHCSSCCEEECCSSCC--CHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHH-HHHHhCCCcCEEECcCCcC--CHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 34566789999999999998432 2 2344457899999999999 443 3445667789999999 88999
Q ss_pred Ccccccccc-ccCCCCCCcEEEcCCCCCC
Q 040978 73 TETVTITTQ-ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 73 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~ 100 (104)
....-..+. .+...++|+.|++++|.+.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 853200012 5566789999999999763
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=1.4e-07 Score=62.13 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCCEEECCCCCCCCccccCcc-----CCCCCCCEEeCCCCcccCCch----hhhhcCCCCCccEEeccCCcCCccccccc
Q 040978 10 NLELLDMSFNEINNLVVPQGY-----SGLRKLKSLDLSRVGVRDGSK----LLQSMGSFPSLNNLYLSSNNFTETVTITT 80 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~-----~~~~~L~~l~l~~~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 80 (104)
+|+.|++++|.+.+... ..+ ...++|+.|++++|.+ +.. ++..+...++|+.|++++|.+.+..-..+
T Consensus 127 ~L~~L~Ls~n~l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 127 RARKLGLQLNSLGPEAC-KDLRDLLLHDQCQITTLRLSNNPL--TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp TEEEEECCSSCCCHHHH-HHHHHHHHSTTCCCCEEECCSSCC--HHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHH-HHHHHHHHhcCCccceeeCCCCCC--ChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 45555555555542211 111 2345566666666666 221 22233455667777777776653210000
Q ss_pred c-ccCCCCCCcEEEcCCCCCC
Q 040978 81 Q-ELHNFTNLEYLKLNDSPLH 100 (104)
Q Consensus 81 ~-~~~~~~~L~~l~l~~n~~~ 100 (104)
. .+...++|+.|++++|.++
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCCcCeEECCCCCCC
Confidence 2 4455567777777777664
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.30 E-value=4.9e-08 Score=66.85 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCCCCCEEECCCCCCCCccccCccCC-CCCCCEEeCCCCcccCCchhhhhc-CCCCCccEEeccCCcCCcccccccc--c
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYSG-LRKLKSLDLSRVGVRDGSKLLQSM-GSFPSLNNLYLSSNNFTETVTITTQ--E 82 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~--~ 82 (104)
.+++|+.|++++ .+.+... ..+.. +++|+.|++++|.+ +......+ ..+++|+.|++++|.+++.. . .
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i--~~~~~~~l~~~~~~L~~L~L~~n~~~~~~----~~~~ 501 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGD--SDLGMHHVLSGCDSLRKLEIRDCPFGDKA----LLAN 501 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCS--SHHHHHHHHHHCTTCCEEEEESCSCCHHH----HHHT
T ss_pred hCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCC--cHHHHHHHHhcCCCcCEEECcCCCCcHHH----HHHH
Confidence 345555666544 3332222 22222 55666666666666 33333332 34666777777777764332 2 2
Q ss_pred cCCCCCCcEEEcCCCCC
Q 040978 83 LHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~~ 99 (104)
...+++|+.|++++|.+
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 34466777777777665
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.09 E-value=1.7e-05 Score=52.73 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=61.9
Q ss_pred cccCCCCCCCEEECCCCCCC----CccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCccccc
Q 040978 3 AEFNSFNNLELLDMSFNEIN----NLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTI 78 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 78 (104)
.+|.+|.+|+.+++.++.+. ..++...|.++.+|+.+.+.. .+ .......|..+.+|+.+.+..+ +....
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i--~~I~~~aF~~c~~L~~l~lp~~-l~~I~-- 338 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI--RILGQGLLGGNRKVTQLTIPAN-VTQIN-- 338 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC--CEECTTTTTTCCSCCEEEECTT-CCEEC--
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce--EEEhhhhhcCCCCccEEEECcc-ccEEc--
Confidence 45778888888888776553 013336778888888888884 35 3444567888888888888554 55343
Q ss_pred ccc-ccCCCCCCcEEEcCCCCC
Q 040978 79 TTQ-ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 79 ~~~-~~~~~~~L~~l~l~~n~~ 99 (104)
. .|..+ +|+.+++.+|..
T Consensus 339 --~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 339 --FSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp --TTSSSSS-CCCEEEECCSSC
T ss_pred --HHhCCCC-CCCEEEEcCCCC
Confidence 4 78888 888888888754
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.05 E-value=6.5e-07 Score=61.34 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=50.0
Q ss_pred CCCCCCEEECCCCCCCCc----cccCccCCCCCCCEEeCCCCcccCC----chhhhhcCCCCCccEEeccCCcCCccccc
Q 040978 7 SFNNLELLDMSFNEINNL----VVPQGYSGLRKLKSLDLSRVGVRDG----SKLLQSMGSFPSLNNLYLSSNNFTETVTI 78 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 78 (104)
.+++|++|++++|.+.+. ++ .....+++|+.|+++.+.+ . ...+..+..+++|+.|++++|.+.+ .
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l-- 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEF--AKISPKDLETIARNCRSLVSVKVGDFEILE-L-- 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCC--SSCCHHHHHHHHHHCTTCCEEECSSCBGGG-G--
T ss_pred hCCCCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCC--CccCHHHHHHHHhhCCCCcEEeccCccHHH-H--
Confidence 567788888888876533 22 2334567777888877776 3 2334445567778888887776653 2
Q ss_pred ccc-ccCCCCCCcEEEcC
Q 040978 79 TTQ-ELHNFTNLEYLKLN 95 (104)
Q Consensus 79 ~~~-~~~~~~~L~~l~l~ 95 (104)
+ .+..+++|+.++++
T Consensus 236 --~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 236 --VGFFKAAANLEEFCGG 251 (592)
T ss_dssp --HHHHHHCTTCCEEEEC
T ss_pred --HHHHhhhhHHHhhccc
Confidence 3 44555555555554
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.04 E-value=1.6e-06 Score=59.36 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCCCCCEEECCCCCCCCccccCccC-CCCCCCEEeCCCC-cccCCch-hhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 7 SFNNLELLDMSFNEINNLVVPQGYS-GLRKLKSLDLSRV-GVRDGSK-LLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 7 ~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~-~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.+++|++|++++|.+.+..+ ..+. .+++|+.|++.+| .+ +.. .+.....+++|+.|++++|.+.+.....++ .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 46677777777777664433 3343 4677777777777 44 222 333344567777777777776543200002 2
Q ss_pred cCCCCCCcEEEcCCCC
Q 040978 83 LHNFTNLEYLKLNDSP 98 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n~ 98 (104)
...+++|+.|+++.|.
T Consensus 180 ~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCCCCEEECTTCC
T ss_pred hhcCCcCcEEEecccC
Confidence 2355677777776664
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=2.3e-05 Score=51.56 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=54.8
Q ss_pred CCCCCCEEECCC--CCCCCc-----cccCcc--CCCCCCCEEeCCCCcccCCchhhhhc---CCCCCccEEeccCCcCCc
Q 040978 7 SFNNLELLDMSF--NEINNL-----VVPQGY--SGLRKLKSLDLSRVGVRDGSKLLQSM---GSFPSLNNLYLSSNNFTE 74 (104)
Q Consensus 7 ~~~~L~~L~l~~--n~~~~~-----~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~---~~l~~L~~l~l~~n~~~~ 74 (104)
.+++|+.|+++. +...+. +. ..+ ..+++|+.|++.+|.+ ....+..+ ..+++|+.|+++.|.+.+
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i--~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEE--QNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTT--HHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCC--chHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 578888887743 111101 11 112 2467888888888887 33332222 346788999998888875
Q ss_pred ccccccc-ccCCCCCCcEEEcCCCCCCC
Q 040978 75 TVTITTQ-ELHNFTNLEYLKLNDSPLHI 101 (104)
Q Consensus 75 ~~~~~~~-~~~~~~~L~~l~l~~n~~~~ 101 (104)
.--..+. .+..+++|+.|+++.|.++.
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3200002 33456888999998887653
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.68 E-value=0.00029 Score=46.83 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=29.8
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEecc
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLS 68 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~ 68 (104)
.+|.+|.+|+.+++..|.+. .++...|. +..|+.+.+..+ + .......|..+.+|+.+.+.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l--~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-L--KEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp STTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-C--CEECTTTTTTCTTCCCEECC
T ss_pred HHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-h--heehhhHhhCCCCCCEEecC
Confidence 35667777777777776655 33312232 344555544432 2 12222334444444444443
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.2e-05 Score=47.93 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=51.1
Q ss_pred ccCCCCCCCEEECCCCC-CCCccccCccCCC----CCCCEEeCCCC-cccCCchhhhhcCCCCCccEEeccCCc-CC
Q 040978 4 EFNSFNNLELLDMSFNE-INNLVVPQGYSGL----RKLKSLDLSRV-GVRDGSKLLQSMGSFPSLNNLYLSSNN-FT 73 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~----~~L~~l~l~~~-~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~ 73 (104)
.+..|++|+.|++++|. +++..- ..+..+ ++|+.|++++| ++ +...-..+..+++|+.|+++++. ++
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~I--TD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNV--TDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTC--CHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcC--CHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 46789999999999996 664332 445553 47999999998 48 45445567789999999999986 44
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.00043 Score=45.54 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=49.2
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|.++.+|+.+.+. +.+. .++...|.++.+|+.+.+..+ + .......|..+.+|+.+.+..+ +.... . +|
T Consensus 284 F~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v--~~I~~~aF~~C~~L~~i~ip~s-v~~I~----~~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-I--TQILDDAFAGCEQLERIAIPSS-VTKIP----ESAF 353 (394)
T ss_dssp TTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEECTT-CCBCC----GGGG
T ss_pred cccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-c--cEehHhHhhCCCCCCEEEECcc-cCEEh----HhHh
Confidence 3445555555553 2233 233256667777777777654 3 2333456777777777777543 44333 3 77
Q ss_pred CCCCCCcEEEcCCC
Q 040978 84 HNFTNLEYLKLNDS 97 (104)
Q Consensus 84 ~~~~~L~~l~l~~n 97 (104)
..|.+|+.+++.++
T Consensus 354 ~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 354 SNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECCc
Confidence 78888888777665
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.55 E-value=0.00019 Score=47.19 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcC--CCCCccEEecc
Q 040978 6 NSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMG--SFPSLNNLYLS 68 (104)
Q Consensus 6 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~l~~L~~l~l~ 68 (104)
..+++|+.|++++|.-. ..+ . + .+++|+.|++..+.+ .......+. .+++|+.|+++
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~-~-~-~~~~L~~L~L~~~~l--~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIG-K-K-PRPNLKSLEIISGGL--PDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCC-S-C-BCTTCSEEEEECSBC--CHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCc-eec-c-c-cCCCCcEEEEecCCC--ChHHHHHHHHccCCCCcEEEEe
Confidence 45667777777665311 222 2 2 255666666666655 222222222 45666666553
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.51 E-value=0.00035 Score=45.95 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=58.4
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
.|..+.+|+.+.+..+ +. .++...|.++.+|+.+++..+ + .......|..+.+|+.+.+..+ +.... . +
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v--~~I~~~aF~~c~~L~~i~lp~~-l~~I~----~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-V--EEIGKRSFRGCTSLSNINFPLS-LRKIG----ANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCEECCCTT-CCEEC----TTT
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-c--cEEhHHhccCCCCCCEEEECcc-ccEeh----HHH
Confidence 3566778888877654 44 343367788888888888754 4 3444567888888998888765 55343 4 8
Q ss_pred cCCCCCCcEEEcCCC
Q 040978 83 LHNFTNLEYLKLNDS 97 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n 97 (104)
|..|.+|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 888888888877543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.40 E-value=0.00061 Score=44.43 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=44.7
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|.++.+|+.+.+..+ +. .++...|.++.+|+.+.+.++.+ .......|..+.+|+.+.+..+ ++... . +|
T Consensus 259 F~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~----~~aF 329 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAI--ETLEPRVFMDCVKLSSVTLPTA-LKTIQ----VYAF 329 (379)
T ss_dssp TTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEEC----TTTT
T ss_pred cceeehhcccccccc-ce-ecccccccccccccccccccccc--ceehhhhhcCCCCCCEEEcCcc-ccEEH----HHHh
Confidence 334445555554332 22 22224556666777777766655 3333456666777777777543 33222 3 66
Q ss_pred CCCCCCcEEEcCC
Q 040978 84 HNFTNLEYLKLND 96 (104)
Q Consensus 84 ~~~~~L~~l~l~~ 96 (104)
..|.+|+.+.+..
T Consensus 330 ~~C~~L~~i~ip~ 342 (379)
T 4h09_A 330 KNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCCCCCCT
T ss_pred hCCCCCCEEEECC
Confidence 6777776665543
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.33 E-value=0.00052 Score=38.73 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=36.4
Q ss_pred EEECCCCCCC-CccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCC
Q 040978 13 LLDMSFNEIN-NLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFT 73 (104)
Q Consensus 13 ~L~l~~n~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 73 (104)
.++-+++.++ ..+| ..+ ..+++.|++++|++ +..-+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence 5666666654 1334 222 23588888888888 4433456777788888888888775
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00039 Score=42.14 Aligned_cols=89 Identities=11% Similarity=0.174 Sum_probs=54.0
Q ss_pred CCCCCCCEEECCCC-CCCCc----cccCccCCCCCCCEEeCCCCcccCCchhh----hhcCCCCCccEEeccCCcCCccc
Q 040978 6 NSFNNLELLDMSFN-EINNL----VVPQGYSGLRKLKSLDLSRVGVRDGSKLL----QSMGSFPSLNNLYLSSNNFTETV 76 (104)
Q Consensus 6 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~l~~L~~l~l~~n~~~~~~ 76 (104)
..-++|++|+++++ .+.+. +. ..+..=.+|+.|++++|.+ ..... ..+..-.+|+.|+++.|.+.+.-
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~i--gd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAI--SDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCC--BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCC--ChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 44567888888875 66532 12 2344445688888888888 43322 23334467888888888887431
Q ss_pred ccccc-ccCCCCCCcEEEcCCC
Q 040978 77 TITTQ-ELHNFTNLEYLKLNDS 97 (104)
Q Consensus 77 ~~~~~-~~~~~~~L~~l~l~~n 97 (104)
-..+- .+..-.+|+.|++++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 00002 4455567888888754
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.09 E-value=0.0042 Score=40.81 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=61.6
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-c
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-E 82 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~ 82 (104)
+|.++..|+.+.+..+... ... ..|.++..|+.+.+... + .......|..+.+|+.+.+..+ ++... . +
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~-~aF~~c~~L~~i~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~----~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGT-GAFMNCPALQDIEFSSR-I--TELPESVFAGCISLKSIDIPEG-ITQIL----DDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECT-TTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEECCTT-CCEEC----TTT
T ss_pred eeeecccccEEecccccce-ecC-cccccccccccccCCCc-c--cccCceeecCCCCcCEEEeCCc-ccEeh----HhH
Confidence 5778888999988765543 333 67888899999998753 4 2334457888999999999764 44333 4 8
Q ss_pred cCCCCCCcEEEcCCC
Q 040978 83 LHNFTNLEYLKLNDS 97 (104)
Q Consensus 83 ~~~~~~L~~l~l~~n 97 (104)
|..|.+|+.+.+..+
T Consensus 330 F~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTCTTCCEEEECTT
T ss_pred hhCCCCCCEEEECcc
Confidence 999999999988654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.0045 Score=40.33 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=55.8
Q ss_pred cCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-cc
Q 040978 5 FNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ-EL 83 (104)
Q Consensus 5 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-~~ 83 (104)
|..+..|+.+.+..+ +. .+....+.++..++.+.+..+ + .......|..+.+|+.+.+.++.+.... . .|
T Consensus 236 f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i--~~i~~~aF~~c~~L~~i~l~~~~i~~I~----~~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-V--KTVPYLLCSGCSNLTKVVMDNSAIETLE----PRVF 306 (379)
T ss_dssp TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-C--SEECTTTTTTCTTCCEEEECCTTCCEEC----TTTT
T ss_pred ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-c--eeccccccccccccccccccccccceeh----hhhh
Confidence 445666666666544 33 222255666777777777554 3 2333456778889999999887777454 4 88
Q ss_pred CCCCCCcEEEcCCC
Q 040978 84 HNFTNLEYLKLNDS 97 (104)
Q Consensus 84 ~~~~~L~~l~l~~n 97 (104)
..|.+|+.+.+..+
T Consensus 307 ~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 307 MDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCTTCCEEECCTT
T ss_pred cCCCCCCEEEcCcc
Confidence 99999999988654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.99 E-value=0.0019 Score=42.43 Aligned_cols=79 Identities=11% Similarity=0.291 Sum_probs=59.4
Q ss_pred cccCCCCCCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccCCcCCcccccccc-
Q 040978 3 AEFNSFNNLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSSNNFTETVTITTQ- 81 (104)
Q Consensus 3 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~- 81 (104)
.+|.+|.+|+.+++..+ +. .+....|.++.+|+.+.+..+ + .......|..+.+|+.+.+..+ +. .. .
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~lp~~-~~-~~----~~ 382 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCINLKKVELPKR-LE-QY----RY 382 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCTTCCEEEEEGG-GG-GG----GG
T ss_pred hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCCCCCEEEECCC-CE-Eh----hh
Confidence 35788999999999754 55 444378999999999999876 5 3445568999999999999754 22 23 4
Q ss_pred ccCCCCCCcEE
Q 040978 82 ELHNFTNLEYL 92 (104)
Q Consensus 82 ~~~~~~~L~~l 92 (104)
.|..+.+|+.+
T Consensus 383 ~F~~c~~L~~I 393 (394)
T 4fs7_A 383 DFEDTTKFKWI 393 (394)
T ss_dssp GBCTTCEEEEE
T ss_pred eecCCCCCcEE
Confidence 78888888764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0031 Score=35.51 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=26.9
Q ss_pred CCCEEECCCCCCCCccccCccCCCCCCCEEeCCCCcc
Q 040978 10 NLELLDMSFNEINNLVVPQGYSGLRKLKSLDLSRVGV 46 (104)
Q Consensus 10 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~~ 46 (104)
++++|++++|.++ .++...|..+++|+.+++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 5888888888887 44436677778888888888765
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.93 E-value=0.00042 Score=41.97 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=62.0
Q ss_pred ccCCCCCCCEEECCCCCCCCccccCccC----CCCCCCEEeCCCCcccCCchh----hhhcCCCCCccEEeccCC---cC
Q 040978 4 EFNSFNNLELLDMSFNEINNLVVPQGYS----GLRKLKSLDLSRVGVRDGSKL----LQSMGSFPSLNNLYLSSN---NF 72 (104)
Q Consensus 4 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~l~l~~~~~~~~~~~----~~~~~~l~~L~~l~l~~n---~~ 72 (104)
.+..-.+|+.|++++|.+.+..- ..+. .=..|+.|++++|.+ .... .+.+..-..|+.|+++++ .+
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga-~alA~aL~~N~tL~~L~L~~N~I--g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEA-RGLIELIETSPSLRVLNVESNFL--TPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHH-TTHHHHHHHCSSCCEEECCSSBC--CHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHH-HHHHHHHhcCCccCeEecCCCcC--CHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 45566889999999999985432 3332 236799999999999 4432 334555577999999865 33
Q ss_pred Ccccccccc-ccCCCCCCcEEEcCCCCC
Q 040978 73 TETVTITTQ-ELHNFTNLEYLKLNDSPL 99 (104)
Q Consensus 73 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~ 99 (104)
.......+. .+..-++|+.++++.|.+
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 422100112 455667899999987653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.65 E-value=4.8 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=17.3
Q ss_pred CccCCCCCCCEEeCCCCcccCCchhhhhcCCCCCccEEeccC
Q 040978 28 QGYSGLRKLKSLDLSRVGVRDGSKLLQSMGSFPSLNNLYLSS 69 (104)
Q Consensus 28 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~ 69 (104)
..|.++..|+.+.+..+- .......|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcC
Confidence 344455555555544431 122223455555555555543
Done!