Query 040979
Match_columns 292
No_of_seqs 218 out of 2162
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.1E-52 2.4E-57 430.2 25.0 281 1-292 12-304 (1153)
2 PLN03194 putative disease resi 100.0 1E-38 2.2E-43 255.8 10.5 151 1-172 26-178 (187)
3 smart00255 TIR Toll - interleu 99.9 2.2E-21 4.8E-26 153.3 12.2 134 1-136 1-138 (140)
4 PF01582 TIR: TIR domain; Int 99.9 1.2E-22 2.6E-27 160.9 2.8 130 4-133 1-140 (141)
5 PF13676 TIR_2: TIR domain; PD 99.7 2.4E-18 5.3E-23 128.5 3.3 91 4-103 1-91 (102)
6 PF00931 NB-ARC: NB-ARC domain 99.7 2E-16 4.3E-21 139.7 11.1 103 186-292 1-109 (287)
7 KOG4658 Apoptotic ATPase [Sign 99.6 2.6E-15 5.6E-20 149.3 10.7 103 184-292 161-269 (889)
8 TIGR02928 orc1/cdc6 family rep 98.9 2.8E-08 6E-13 90.8 11.9 113 176-292 10-137 (365)
9 PRK00411 cdc6 cell division co 98.8 3.3E-08 7.2E-13 91.3 12.2 113 176-292 25-146 (394)
10 KOG3678 SARM protein (with ste 98.8 1.1E-08 2.5E-13 92.6 8.3 91 1-97 612-710 (832)
11 PF13401 AAA_22: AAA domain; P 98.6 5.9E-08 1.3E-12 75.2 5.5 86 203-292 3-95 (131)
12 PF13191 AAA_16: AAA ATPase do 98.6 8.6E-08 1.9E-12 78.7 6.6 50 182-231 1-51 (185)
13 PTZ00202 tuzin; Provisional 98.6 5.2E-07 1.1E-11 82.5 11.3 79 175-263 256-335 (550)
14 PF08937 DUF1863: MTH538 TIR-l 98.6 1.3E-07 2.8E-12 73.6 6.5 88 2-94 1-105 (130)
15 COG1474 CDC6 Cdc6-related prot 98.5 6.3E-07 1.4E-11 81.6 10.3 113 176-292 12-131 (366)
16 TIGR03015 pepcterm_ATPase puta 98.5 8.8E-07 1.9E-11 77.4 9.4 85 203-292 42-131 (269)
17 PF01637 Arch_ATPase: Archaeal 98.4 4.7E-07 1E-11 76.8 5.0 55 183-239 1-55 (234)
18 cd01128 rho_factor Transcripti 98.3 4.3E-07 9.3E-12 78.4 4.3 86 203-292 15-111 (249)
19 PTZ00112 origin recognition co 98.3 3.6E-06 7.9E-11 82.8 10.3 114 175-292 749-877 (1164)
20 PRK09376 rho transcription ter 98.3 1.5E-06 3.4E-11 78.7 6.6 85 204-292 169-264 (416)
21 PF05729 NACHT: NACHT domain 98.2 5.3E-06 1.2E-10 66.5 7.6 83 205-292 1-89 (166)
22 cd00009 AAA The AAA+ (ATPases 98.2 1.6E-05 3.4E-10 61.9 9.8 52 185-238 2-53 (151)
23 TIGR00767 rho transcription te 98.2 5.2E-06 1.1E-10 75.6 7.8 88 203-292 167-263 (415)
24 PF08357 SEFIR: SEFIR domain; 98.2 2.8E-06 6E-11 67.7 5.3 65 3-67 2-70 (150)
25 PF05496 RuvB_N: Holliday junc 98.1 1.1E-05 2.4E-10 67.8 7.9 56 178-233 21-79 (233)
26 PRK00080 ruvB Holliday junctio 98.1 5.2E-06 1.1E-10 74.9 5.8 54 178-231 22-78 (328)
27 TIGR00635 ruvB Holliday juncti 98.0 8.9E-06 1.9E-10 72.5 5.2 51 181-231 4-57 (305)
28 KOG2543 Origin recognition com 97.9 9.6E-05 2.1E-09 66.3 10.1 76 180-262 5-81 (438)
29 COG2256 MGS1 ATPase related to 97.8 6.4E-05 1.4E-09 67.8 7.5 53 179-233 22-77 (436)
30 PRK13342 recombination factor 97.8 5.1E-05 1.1E-09 70.7 7.3 52 179-232 10-64 (413)
31 PRK04195 replication factor C 97.7 0.00014 3E-09 69.1 8.8 51 178-228 11-63 (482)
32 PRK04841 transcriptional regul 97.7 0.00017 3.8E-09 73.6 10.0 74 176-262 9-83 (903)
33 PRK09361 radB DNA repair and r 97.7 0.00014 3E-09 61.9 7.4 49 191-239 10-58 (225)
34 KOG0744 AAA+-type ATPase [Post 97.7 0.00011 2.4E-09 64.5 6.7 71 204-287 177-251 (423)
35 PRK07261 topology modulation p 97.7 0.00024 5.2E-09 57.9 8.1 33 206-238 2-37 (171)
36 PF00308 Bac_DnaA: Bacterial d 97.7 0.00037 8.1E-09 59.1 9.5 30 203-232 33-62 (219)
37 PRK11331 5-methylcytosine-spec 97.6 0.00019 4.1E-09 66.6 8.2 66 181-254 175-242 (459)
38 smart00382 AAA ATPases associa 97.6 0.00014 3E-09 55.9 6.2 34 205-238 3-36 (148)
39 CHL00095 clpC Clp protease ATP 97.6 0.0002 4.4E-09 72.3 8.9 47 181-229 179-225 (821)
40 TIGR02639 ClpA ATP-dependent C 97.6 0.00026 5.6E-09 70.7 9.5 49 180-230 181-229 (731)
41 PRK08118 topology modulation p 97.6 0.0002 4.4E-09 58.1 7.1 33 206-238 3-38 (167)
42 PRK08116 hypothetical protein; 97.6 0.00032 7E-09 61.4 8.6 34 205-238 115-148 (268)
43 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00035 7.5E-09 60.9 8.5 87 204-292 69-171 (274)
44 PRK10865 protein disaggregatio 97.6 0.00039 8.4E-09 70.4 10.1 49 180-230 177-225 (857)
45 KOG2028 ATPase related to the 97.6 0.00015 3.3E-09 64.7 6.2 50 180-231 137-189 (554)
46 PRK06893 DNA replication initi 97.6 0.00034 7.3E-09 59.8 8.1 36 204-239 39-74 (229)
47 PF04665 Pox_A32: Poxvirus A32 97.6 0.00019 4.1E-09 61.4 6.3 35 205-239 14-48 (241)
48 TIGR01242 26Sp45 26S proteasom 97.6 0.00029 6.2E-09 64.6 7.9 53 180-232 121-184 (364)
49 PRK12377 putative replication 97.5 0.00066 1.4E-08 58.6 9.6 36 204-239 101-136 (248)
50 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00021 4.5E-09 61.1 6.5 48 192-239 7-60 (235)
51 PLN03025 replication factor C 97.5 0.0004 8.7E-09 62.4 8.5 50 178-229 10-59 (319)
52 PRK00149 dnaA chromosomal repl 97.5 0.00054 1.2E-08 64.6 9.6 30 204-233 148-177 (450)
53 PRK07952 DNA replication prote 97.5 0.00099 2.1E-08 57.4 10.4 35 204-238 99-133 (244)
54 PRK03992 proteasome-activating 97.5 0.00034 7.3E-09 64.6 8.0 51 181-231 131-192 (389)
55 PRK13341 recombination factor 97.5 0.00023 5.1E-09 70.4 7.3 53 178-232 25-80 (725)
56 PRK14088 dnaA chromosomal repl 97.5 0.00089 1.9E-08 62.8 10.7 29 204-232 130-158 (440)
57 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 56.2 3.6 23 206-228 1-23 (121)
58 PF00004 AAA: ATPase family as 97.5 0.00048 1E-08 52.8 7.4 23 207-229 1-23 (132)
59 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00063 1.4E-08 68.8 10.0 50 179-230 185-234 (852)
60 TIGR03689 pup_AAA proteasome A 97.5 0.00042 9.1E-09 65.7 8.1 51 181-231 182-243 (512)
61 COG1484 DnaC DNA replication p 97.4 0.0007 1.5E-08 58.8 8.6 37 203-239 104-140 (254)
62 TIGR02237 recomb_radB DNA repa 97.4 0.00034 7.4E-09 58.7 6.5 44 196-239 4-47 (209)
63 PF01695 IstB_IS21: IstB-like 97.4 0.00054 1.2E-08 56.2 7.4 36 204-239 47-82 (178)
64 TIGR00362 DnaA chromosomal rep 97.4 0.00078 1.7E-08 62.6 9.4 29 204-232 136-164 (405)
65 PF05673 DUF815: Protein of un 97.4 0.00069 1.5E-08 57.8 8.2 56 176-231 22-79 (249)
66 COG2255 RuvB Holliday junction 97.4 0.0002 4.4E-09 61.9 4.6 55 178-232 23-80 (332)
67 PF13173 AAA_14: AAA domain 97.4 0.00062 1.3E-08 52.6 7.0 35 204-239 2-36 (128)
68 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00093 2E-08 67.8 9.8 49 180-230 172-220 (852)
69 cd01394 radB RadB. The archaea 97.4 0.00065 1.4E-08 57.4 7.5 50 190-239 5-54 (218)
70 PF05621 TniB: Bacterial TniB 97.4 0.0014 3E-08 57.7 9.5 107 182-292 35-153 (302)
71 KOG2227 Pre-initiation complex 97.4 0.0018 3.8E-08 59.8 10.2 111 178-292 147-264 (529)
72 PRK12608 transcription termina 97.4 0.00093 2E-08 60.7 8.4 85 205-292 134-228 (380)
73 PRK14962 DNA polymerase III su 97.3 0.0016 3.5E-08 61.5 10.4 50 178-228 11-60 (472)
74 PRK14087 dnaA chromosomal repl 97.3 0.0013 2.8E-08 61.9 9.7 28 204-231 141-168 (450)
75 cd01393 recA_like RecA is a b 97.3 0.0021 4.5E-08 54.5 10.0 49 191-239 6-60 (226)
76 PRK08727 hypothetical protein; 97.3 0.0015 3.3E-08 56.0 9.1 36 204-239 41-76 (233)
77 PRK08939 primosomal protein Dn 97.3 0.0025 5.5E-08 56.8 10.6 37 203-239 155-191 (306)
78 PRK14961 DNA polymerase III su 97.3 0.0023 4.9E-08 58.6 10.5 51 178-229 13-63 (363)
79 PRK07667 uridine kinase; Provi 97.3 0.00075 1.6E-08 56.1 6.7 40 191-230 4-43 (193)
80 PRK14957 DNA polymerase III su 97.3 0.0018 3.9E-08 62.1 10.1 51 178-229 13-63 (546)
81 PRK08181 transposase; Validate 97.3 0.0011 2.4E-08 57.9 7.9 36 204-239 106-141 (269)
82 PRK06696 uridine kinase; Valid 97.3 0.00048 1E-08 58.6 5.5 45 186-230 3-48 (223)
83 COG1618 Predicted nucleotide k 97.3 0.00037 8.1E-09 55.3 4.2 31 205-235 6-37 (179)
84 COG2607 Predicted ATPase (AAA+ 97.2 0.0054 1.2E-07 52.0 11.2 61 176-236 55-117 (287)
85 PRK00440 rfc replication facto 97.2 0.0016 3.4E-08 58.2 8.8 50 179-230 15-64 (319)
86 COG2909 MalT ATP-dependent tra 97.2 0.0017 3.6E-08 63.9 9.3 79 178-266 16-95 (894)
87 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00043 9.2E-09 62.5 4.8 50 181-230 51-104 (361)
88 cd00983 recA RecA is a bacter 97.2 0.0013 2.8E-08 58.9 7.8 49 191-239 41-90 (325)
89 PRK07003 DNA polymerase III su 97.2 0.0019 4.2E-08 63.4 9.5 50 178-228 13-62 (830)
90 PF00448 SRP54: SRP54-type pro 97.2 0.0013 2.8E-08 54.8 7.3 36 204-239 1-36 (196)
91 PRK14963 DNA polymerase III su 97.2 0.0023 5.1E-08 60.9 9.8 51 178-229 11-61 (504)
92 TIGR02012 tigrfam_recA protein 97.2 0.0015 3.2E-08 58.4 7.9 49 191-239 41-90 (321)
93 PF10137 TIR-like: Predicted n 97.2 0.0015 3.2E-08 50.1 6.6 61 3-66 1-61 (125)
94 PRK09354 recA recombinase A; P 97.2 0.0018 3.8E-08 58.5 8.1 49 191-239 46-95 (349)
95 PRK06921 hypothetical protein; 97.2 0.0019 4E-08 56.5 8.1 37 203-239 116-153 (266)
96 PRK14949 DNA polymerase III su 97.2 0.0023 5.1E-08 64.0 9.6 51 178-229 13-63 (944)
97 PRK14958 DNA polymerase III su 97.1 0.003 6.5E-08 60.3 9.9 50 178-228 13-62 (509)
98 PRK06526 transposase; Provisio 97.1 0.001 2.2E-08 57.7 6.0 27 204-230 98-124 (254)
99 PRK05541 adenylylsulfate kinas 97.1 0.00078 1.7E-08 55.0 4.7 37 203-239 6-42 (176)
100 PRK12402 replication factor C 97.1 0.00071 1.5E-08 61.0 4.9 50 179-230 13-62 (337)
101 PRK11034 clpA ATP-dependent Cl 97.1 0.0024 5.2E-08 63.6 8.9 46 181-228 186-231 (758)
102 PF13238 AAA_18: AAA domain; P 97.1 0.0005 1.1E-08 52.5 3.4 22 207-228 1-22 (129)
103 PRK08903 DnaA regulatory inact 97.1 0.0024 5.2E-08 54.3 7.8 50 178-228 15-66 (227)
104 PRK14960 DNA polymerase III su 97.1 0.0036 7.9E-08 60.8 9.7 50 178-228 12-61 (702)
105 PTZ00454 26S protease regulato 97.1 0.0023 4.9E-08 59.2 8.0 52 181-232 145-207 (398)
106 PRK14969 DNA polymerase III su 97.1 0.0043 9.4E-08 59.5 10.1 50 178-228 13-62 (527)
107 PRK06835 DNA replication prote 97.0 0.0052 1.1E-07 55.4 10.0 36 204-239 183-218 (329)
108 TIGR00602 rad24 checkpoint pro 97.0 0.00044 9.5E-09 67.3 3.2 53 176-228 79-134 (637)
109 COG3903 Predicted ATPase [Gene 97.0 0.00035 7.6E-09 63.4 2.2 84 203-292 13-96 (414)
110 PRK09183 transposase/IS protei 97.0 0.0038 8.3E-08 54.4 8.6 26 204-229 102-127 (259)
111 cd01120 RecA-like_NTPases RecA 97.0 0.0055 1.2E-07 48.5 8.9 33 207-239 2-34 (165)
112 PRK12422 chromosomal replicati 97.0 0.0037 8.1E-08 58.7 8.9 35 204-238 141-175 (445)
113 PRK12323 DNA polymerase III su 97.0 0.0045 9.8E-08 60.1 9.5 50 178-228 13-62 (700)
114 PF00485 PRK: Phosphoribulokin 97.0 0.00081 1.8E-08 55.9 3.9 26 206-231 1-26 (194)
115 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0019 4.2E-08 54.7 6.4 49 188-238 24-72 (226)
116 COG0466 Lon ATP-dependent Lon 97.0 0.0012 2.5E-08 63.9 5.2 53 181-233 323-379 (782)
117 PRK14964 DNA polymerase III su 97.0 0.0065 1.4E-07 57.5 10.2 50 178-228 10-59 (491)
118 PHA02544 44 clamp loader, smal 96.9 0.0016 3.5E-08 58.2 5.8 52 177-229 17-68 (316)
119 PF01583 APS_kinase: Adenylyls 96.9 0.0017 3.8E-08 51.8 5.2 36 204-239 2-37 (156)
120 TIGR02881 spore_V_K stage V sp 96.9 0.0013 2.9E-08 57.3 4.9 47 182-228 7-66 (261)
121 COG0572 Udk Uridine kinase [Nu 96.9 0.0014 3.1E-08 54.9 4.6 30 202-231 6-35 (218)
122 CHL00176 ftsH cell division pr 96.9 0.0034 7.3E-08 61.5 7.9 51 180-230 182-242 (638)
123 TIGR02903 spore_lon_C ATP-depe 96.9 0.0056 1.2E-07 59.9 9.5 49 178-228 151-199 (615)
124 TIGR02238 recomb_DMC1 meiotic 96.9 0.0022 4.8E-08 57.4 6.1 67 191-262 83-155 (313)
125 PRK14086 dnaA chromosomal repl 96.9 0.0068 1.5E-07 58.6 9.7 29 204-232 314-342 (617)
126 TIGR01241 FtsH_fam ATP-depende 96.8 0.003 6.4E-08 60.3 7.1 52 180-231 54-115 (495)
127 PRK05480 uridine/cytidine kina 96.8 0.0012 2.7E-08 55.4 4.1 27 202-228 4-30 (209)
128 PLN03187 meiotic recombination 96.8 0.0023 4.9E-08 57.9 5.9 67 191-262 113-185 (344)
129 TIGR02880 cbbX_cfxQ probable R 96.8 0.005 1.1E-07 54.4 7.9 48 182-229 23-83 (284)
130 PRK00771 signal recognition pa 96.8 0.009 2E-07 55.8 9.9 29 203-231 94-122 (437)
131 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0065 1.4E-07 61.8 9.6 51 181-231 565-622 (852)
132 PRK08233 hypothetical protein; 96.8 0.0011 2.4E-08 54.0 3.5 26 204-229 3-28 (182)
133 PRK08691 DNA polymerase III su 96.8 0.0082 1.8E-07 58.8 9.7 50 178-228 13-62 (709)
134 PRK14970 DNA polymerase III su 96.8 0.011 2.4E-07 54.1 10.3 51 178-229 14-64 (367)
135 PRK06762 hypothetical protein; 96.8 0.0013 2.9E-08 53.0 3.7 24 205-228 3-26 (166)
136 PF08423 Rad51: Rad51; InterP 96.8 0.0016 3.5E-08 56.6 4.5 65 191-260 25-95 (256)
137 PRK07994 DNA polymerase III su 96.8 0.0079 1.7E-07 58.8 9.6 50 178-228 13-62 (647)
138 COG0468 RecA RecA/RadA recombi 96.8 0.0054 1.2E-07 53.7 7.7 58 192-253 48-105 (279)
139 PRK14951 DNA polymerase III su 96.8 0.0085 1.8E-07 58.3 9.7 50 178-228 13-62 (618)
140 PRK06067 flagellar accessory p 96.8 0.0065 1.4E-07 51.9 8.1 50 190-239 11-60 (234)
141 TIGR01243 CDC48 AAA family ATP 96.8 0.0029 6.2E-08 63.4 6.6 52 180-231 177-239 (733)
142 PF08433 KTI12: Chromatin asso 96.8 0.003 6.6E-08 55.3 5.9 26 205-230 2-27 (270)
143 PLN00020 ribulose bisphosphate 96.8 0.006 1.3E-07 55.3 7.8 31 202-232 146-176 (413)
144 PRK10865 protein disaggregatio 96.7 0.011 2.3E-07 60.2 10.5 50 181-230 568-624 (857)
145 PRK10536 hypothetical protein; 96.7 0.013 2.7E-07 50.7 9.4 54 181-238 55-110 (262)
146 PRK00131 aroK shikimate kinase 96.7 0.0015 3.2E-08 52.8 3.6 26 204-229 4-29 (175)
147 cd03115 SRP The signal recogni 96.7 0.0066 1.4E-07 49.3 7.4 26 206-231 2-27 (173)
148 PF13671 AAA_33: AAA domain; P 96.7 0.0015 3.3E-08 51.1 3.5 23 206-228 1-23 (143)
149 PRK03839 putative kinase; Prov 96.7 0.0015 3.2E-08 53.6 3.5 24 206-229 2-25 (180)
150 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0029 6.2E-08 60.2 5.8 53 180-232 189-251 (802)
151 cd01121 Sms Sms (bacterial rad 96.7 0.0066 1.4E-07 55.7 8.0 50 190-239 68-117 (372)
152 CHL00095 clpC Clp protease ATP 96.7 0.0075 1.6E-07 61.1 9.2 50 181-230 509-565 (821)
153 TIGR03499 FlhF flagellar biosy 96.7 0.0057 1.2E-07 54.0 7.4 28 203-230 193-220 (282)
154 TIGR02236 recomb_radA DNA repa 96.7 0.0073 1.6E-07 54.0 8.2 59 192-254 83-147 (310)
155 TIGR00235 udk uridine kinase. 96.7 0.0019 4.1E-08 54.2 4.2 28 202-229 4-31 (207)
156 PRK14722 flhF flagellar biosyn 96.7 0.01 2.3E-07 54.2 9.2 37 203-239 136-174 (374)
157 PTZ00301 uridine kinase; Provi 96.7 0.0017 3.7E-08 54.7 3.8 28 204-231 3-30 (210)
158 COG0542 clpA ATP-binding subun 96.7 0.0069 1.5E-07 59.9 8.5 102 181-291 491-600 (786)
159 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0057 1.2E-07 52.9 7.2 25 206-230 1-25 (249)
160 PRK11889 flhF flagellar biosyn 96.7 0.0075 1.6E-07 55.3 8.0 28 203-230 240-267 (436)
161 cd02019 NK Nucleoside/nucleoti 96.7 0.0017 3.7E-08 44.4 3.0 23 206-228 1-23 (69)
162 COG4088 Predicted nucleotide k 96.7 0.0044 9.5E-08 51.4 5.8 27 205-231 2-28 (261)
163 COG1224 TIP49 DNA helicase TIP 96.7 0.0068 1.5E-07 54.3 7.4 57 178-234 36-95 (450)
164 TIGR02639 ClpA ATP-dependent C 96.7 0.0091 2E-07 59.7 9.3 49 181-229 454-509 (731)
165 PRK04040 adenylate kinase; Pro 96.7 0.0021 4.6E-08 53.2 4.1 25 205-229 3-27 (188)
166 PRK00625 shikimate kinase; Pro 96.6 0.0018 3.9E-08 52.8 3.4 24 206-229 2-25 (173)
167 PTZ00361 26 proteosome regulat 96.6 0.0027 5.8E-08 59.4 4.9 52 181-232 183-245 (438)
168 PF06068 TIP49: TIP49 C-termin 96.6 0.0051 1.1E-07 55.6 6.4 80 179-260 22-105 (398)
169 COG1222 RPT1 ATP-dependent 26S 96.6 0.0019 4.2E-08 57.7 3.7 47 182-228 152-209 (406)
170 KOG2004 Mitochondrial ATP-depe 96.6 0.0026 5.7E-08 61.5 4.6 53 181-233 411-467 (906)
171 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0074 1.6E-07 61.2 8.0 51 181-231 566-623 (852)
172 PRK07940 DNA polymerase III su 96.6 0.019 4E-07 53.1 10.0 48 181-228 5-60 (394)
173 PRK14952 DNA polymerase III su 96.6 0.016 3.5E-07 56.1 10.0 51 178-229 10-60 (584)
174 TIGR02239 recomb_RAD51 DNA rep 96.6 0.006 1.3E-07 54.7 6.5 38 190-227 82-119 (316)
175 PRK15455 PrkA family serine pr 96.6 0.0033 7.2E-08 60.1 5.0 51 181-231 76-130 (644)
176 PRK13947 shikimate kinase; Pro 96.6 0.0021 4.6E-08 52.0 3.3 26 206-231 3-28 (171)
177 COG0467 RAD55 RecA-superfamily 96.6 0.0079 1.7E-07 52.3 7.1 47 193-239 12-58 (260)
178 COG0563 Adk Adenylate kinase a 96.5 0.0031 6.7E-08 51.7 4.2 23 206-228 2-24 (178)
179 PRK08084 DNA replication initi 96.5 0.0082 1.8E-07 51.5 7.0 29 203-231 44-72 (235)
180 PF07726 AAA_3: ATPase family 96.5 0.0017 3.7E-08 49.9 2.4 31 207-237 2-32 (131)
181 PRK06547 hypothetical protein; 96.5 0.0033 7.2E-08 51.2 4.2 28 201-228 12-39 (172)
182 cd02028 UMPK_like Uridine mono 96.5 0.0037 8.1E-08 51.3 4.5 25 206-230 1-25 (179)
183 PRK05896 DNA polymerase III su 96.5 0.0037 7.9E-08 60.4 4.9 50 178-228 13-62 (605)
184 PRK00889 adenylylsulfate kinas 96.5 0.0048 1E-07 50.2 5.1 28 203-230 3-30 (175)
185 PRK09270 nucleoside triphospha 96.5 0.0054 1.2E-07 52.3 5.6 30 201-230 30-59 (229)
186 PTZ00035 Rad51 protein; Provis 96.5 0.01 2.2E-07 53.7 7.6 39 190-228 104-142 (337)
187 TIGR00064 ftsY signal recognit 96.5 0.019 4.1E-07 50.4 9.0 30 202-231 70-99 (272)
188 PRK03846 adenylylsulfate kinas 96.5 0.0054 1.2E-07 51.1 5.4 37 202-238 22-58 (198)
189 COG4608 AppF ABC-type oligopep 96.5 0.01 2.2E-07 51.4 7.0 89 202-292 37-135 (268)
190 TIGR01360 aden_kin_iso1 adenyl 96.4 0.003 6.6E-08 51.8 3.6 25 204-228 3-27 (188)
191 PF00910 RNA_helicase: RNA hel 96.4 0.002 4.3E-08 48.1 2.3 22 207-228 1-22 (107)
192 cd00227 CPT Chloramphenicol (C 96.4 0.0032 6.9E-08 51.3 3.7 25 205-229 3-27 (175)
193 COG0470 HolB ATPase involved i 96.4 0.031 6.6E-07 49.9 10.4 47 183-229 3-49 (325)
194 cd01131 PilT Pilus retraction 96.4 0.007 1.5E-07 50.5 5.8 33 205-237 2-34 (198)
195 PRK11034 clpA ATP-dependent Cl 96.4 0.012 2.6E-07 58.8 8.2 49 181-229 458-513 (758)
196 PF13086 AAA_11: AAA domain; P 96.4 0.01 2.2E-07 50.0 6.8 63 189-259 6-75 (236)
197 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0057 1.2E-07 47.5 4.8 40 189-228 7-46 (133)
198 PRK09519 recA DNA recombinatio 96.4 0.012 2.7E-07 58.4 8.2 93 190-291 45-145 (790)
199 PRK10867 signal recognition pa 96.4 0.014 2.9E-07 54.6 8.0 29 203-231 99-127 (433)
200 PHA00729 NTP-binding motif con 96.4 0.0042 9.1E-08 52.6 4.2 27 203-229 16-42 (226)
201 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.007 1.5E-07 52.7 5.7 38 202-239 34-71 (259)
202 KOG1969 DNA replication checkp 96.4 0.013 2.7E-07 57.1 7.6 54 202-262 324-377 (877)
203 PRK14955 DNA polymerase III su 96.4 0.0055 1.2E-07 56.8 5.2 50 178-228 13-62 (397)
204 KOG0735 AAA+-type ATPase [Post 96.4 0.014 3.1E-07 56.6 8.0 28 204-231 431-458 (952)
205 COG0003 ArsA Predicted ATPase 96.4 0.0079 1.7E-07 53.9 5.9 35 204-238 2-36 (322)
206 PRK11823 DNA repair protein Ra 96.3 0.016 3.4E-07 54.6 8.2 51 189-239 65-115 (446)
207 PF00006 ATP-synt_ab: ATP synt 96.3 0.015 3.2E-07 49.2 7.2 80 205-292 16-113 (215)
208 PRK14953 DNA polymerase III su 96.3 0.034 7.3E-07 52.9 10.5 50 178-228 13-62 (486)
209 TIGR00416 sms DNA repair prote 96.3 0.017 3.7E-07 54.5 8.4 52 188-239 78-129 (454)
210 KOG0991 Replication factor C, 96.3 0.0046 9.9E-08 52.3 3.9 74 178-257 24-99 (333)
211 PRK14956 DNA polymerase III su 96.3 0.0048 1E-07 58.0 4.5 51 178-229 15-65 (484)
212 PF07728 AAA_5: AAA domain (dy 96.3 0.0035 7.6E-08 48.9 3.1 22 207-228 2-23 (139)
213 cd02020 CMPK Cytidine monophos 96.3 0.0036 7.7E-08 49.0 3.1 24 206-229 1-24 (147)
214 PRK06217 hypothetical protein; 96.3 0.0034 7.4E-08 51.6 3.1 24 206-229 3-26 (183)
215 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0032 7E-08 51.5 2.9 23 206-228 1-23 (183)
216 cd00464 SK Shikimate kinase (S 96.3 0.0042 9.1E-08 49.2 3.4 24 207-230 2-25 (154)
217 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.018 4E-07 49.4 7.6 50 190-239 7-56 (237)
218 cd02023 UMPK Uridine monophosp 96.3 0.0032 7E-08 52.3 2.8 23 206-228 1-23 (198)
219 PRK14959 DNA polymerase III su 96.2 0.031 6.7E-07 54.3 9.6 49 179-228 14-62 (624)
220 cd02024 NRK1 Nicotinamide ribo 96.2 0.0036 7.7E-08 51.7 2.9 23 206-228 1-23 (187)
221 TIGR00678 holB DNA polymerase 96.2 0.059 1.3E-06 44.3 10.2 26 204-229 14-39 (188)
222 PRK13948 shikimate kinase; Pro 96.2 0.0046 1E-07 50.9 3.5 29 203-231 9-37 (182)
223 PF00625 Guanylate_kin: Guanyl 96.2 0.0056 1.2E-07 50.3 4.0 36 204-239 2-37 (183)
224 PRK09280 F0F1 ATP synthase sub 96.2 0.024 5.1E-07 53.2 8.5 87 204-292 144-246 (463)
225 PRK05564 DNA polymerase III su 96.2 0.037 8.1E-07 49.5 9.6 47 181-228 4-50 (313)
226 cd02025 PanK Pantothenate kina 96.2 0.0037 8E-08 53.1 2.9 24 206-229 1-24 (220)
227 PRK08927 fliI flagellum-specif 96.2 0.021 4.6E-07 53.2 8.0 85 203-292 157-256 (442)
228 PRK13949 shikimate kinase; Pro 96.2 0.0047 1E-07 50.2 3.4 24 206-229 3-26 (169)
229 PRK07764 DNA polymerase III su 96.2 0.03 6.5E-07 56.5 9.7 50 178-228 12-61 (824)
230 PF03205 MobB: Molybdopterin g 96.2 0.0091 2E-07 46.9 4.9 35 205-239 1-36 (140)
231 TIGR02322 phosphon_PhnN phosph 96.2 0.0046 1E-07 50.5 3.3 25 205-229 2-26 (179)
232 PRK05703 flhF flagellar biosyn 96.2 0.026 5.6E-07 52.8 8.6 26 204-229 221-246 (424)
233 PRK13946 shikimate kinase; Pro 96.2 0.0045 9.9E-08 50.9 3.3 27 204-230 10-36 (184)
234 TIGR01243 CDC48 AAA family ATP 96.2 0.015 3.2E-07 58.3 7.5 52 181-232 453-515 (733)
235 PRK08972 fliI flagellum-specif 96.2 0.012 2.6E-07 54.7 6.3 85 203-292 161-260 (444)
236 PRK12597 F0F1 ATP synthase sub 96.2 0.025 5.5E-07 53.1 8.5 86 204-292 143-245 (461)
237 TIGR00959 ffh signal recogniti 96.2 0.029 6.3E-07 52.3 8.9 27 203-229 98-124 (428)
238 PRK04301 radA DNA repair and r 96.2 0.019 4.1E-07 51.5 7.5 60 191-254 89-154 (317)
239 PF00158 Sigma54_activat: Sigm 96.2 0.022 4.7E-07 46.2 7.1 45 183-227 1-45 (168)
240 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.013 2.8E-07 49.9 6.0 50 190-239 6-55 (229)
241 COG3640 CooC CO dehydrogenase 96.1 0.011 2.4E-07 50.0 5.3 26 206-231 2-27 (255)
242 TIGR00390 hslU ATP-dependent p 96.1 0.017 3.7E-07 53.3 7.1 52 181-232 12-75 (441)
243 PRK12726 flagellar biosynthesi 96.1 0.023 5.1E-07 51.9 7.8 37 203-239 205-241 (407)
244 COG0593 DnaA ATPase involved i 96.1 0.044 9.6E-07 50.5 9.6 32 203-234 112-143 (408)
245 COG1428 Deoxynucleoside kinase 96.1 0.0054 1.2E-07 51.0 3.3 26 204-229 4-29 (216)
246 COG1936 Predicted nucleotide k 96.1 0.0045 9.8E-08 49.8 2.7 20 206-225 2-21 (180)
247 PRK05201 hslU ATP-dependent pr 96.1 0.02 4.3E-07 52.9 7.2 52 181-232 15-78 (443)
248 cd02021 GntK Gluconate kinase 96.1 0.0046 9.9E-08 48.9 2.8 23 206-228 1-23 (150)
249 TIGR02397 dnaX_nterm DNA polym 96.1 0.011 2.4E-07 53.7 5.5 51 178-229 11-61 (355)
250 PRK05642 DNA replication initi 96.0 0.0097 2.1E-07 51.0 4.8 36 204-239 45-80 (234)
251 PF02374 ArsA_ATPase: Anion-tr 96.0 0.011 2.4E-07 52.7 5.3 26 205-230 2-27 (305)
252 PF03215 Rad17: Rad17 cell cyc 96.0 0.0096 2.1E-07 56.9 5.1 56 182-239 20-78 (519)
253 PRK10751 molybdopterin-guanine 96.0 0.0087 1.9E-07 48.7 4.0 28 203-230 5-32 (173)
254 TIGR01287 nifH nitrogenase iro 96.0 0.0084 1.8E-07 52.6 4.2 26 205-230 1-26 (275)
255 COG3899 Predicted ATPase [Gene 96.0 0.027 5.8E-07 57.2 8.3 49 183-231 2-51 (849)
256 TIGR01039 atpD ATP synthase, F 96.0 0.038 8.3E-07 51.7 8.6 87 204-292 143-245 (461)
257 PF03308 ArgK: ArgK protein; 96.0 0.015 3.3E-07 50.0 5.5 41 191-231 16-56 (266)
258 cd00071 GMPK Guanosine monopho 96.0 0.0054 1.2E-07 48.0 2.6 26 206-231 1-26 (137)
259 PF14516 AAA_35: AAA-like doma 95.9 0.13 2.7E-06 46.6 11.7 113 175-292 5-135 (331)
260 PRK12723 flagellar biosynthesi 95.9 0.024 5.1E-07 52.2 7.1 27 203-229 173-199 (388)
261 PF03266 NTPase_1: NTPase; In 95.9 0.0066 1.4E-07 49.3 3.1 23 207-229 2-24 (168)
262 COG0529 CysC Adenylylsulfate k 95.9 0.014 3.1E-07 47.2 4.9 37 202-238 21-57 (197)
263 PF12775 AAA_7: P-loop contain 95.9 0.0054 1.2E-07 53.8 2.7 25 204-228 33-57 (272)
264 PRK03731 aroL shikimate kinase 95.9 0.0074 1.6E-07 48.8 3.4 24 206-229 4-27 (171)
265 COG1102 Cmk Cytidylate kinase 95.9 0.0069 1.5E-07 48.2 3.0 24 206-229 2-25 (179)
266 PRK09087 hypothetical protein; 95.9 0.016 3.4E-07 49.5 5.4 25 204-228 44-68 (226)
267 PRK06645 DNA polymerase III su 95.9 0.011 2.3E-07 56.4 4.8 50 178-228 18-67 (507)
268 TIGR01313 therm_gnt_kin carboh 95.9 0.0055 1.2E-07 49.2 2.5 22 207-228 1-22 (163)
269 PRK12339 2-phosphoglycerate ki 95.9 0.0086 1.9E-07 49.9 3.7 25 204-228 3-27 (197)
270 PRK14530 adenylate kinase; Pro 95.9 0.0074 1.6E-07 50.9 3.4 23 206-228 5-27 (215)
271 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.024 5.2E-07 49.5 6.6 52 204-259 69-121 (274)
272 PF03029 ATP_bind_1: Conserved 95.9 0.01 2.2E-07 51.0 4.2 23 209-231 1-23 (238)
273 PRK13975 thymidylate kinase; P 95.9 0.0085 1.9E-07 49.6 3.7 26 205-230 3-28 (196)
274 PRK05057 aroK shikimate kinase 95.9 0.008 1.7E-07 49.0 3.4 26 204-229 4-29 (172)
275 PF13245 AAA_19: Part of AAA d 95.9 0.03 6.4E-07 39.0 5.8 25 204-228 10-35 (76)
276 PRK14974 cell division protein 95.9 0.038 8.3E-07 49.9 8.0 29 203-231 139-167 (336)
277 CHL00181 cbbX CbbX; Provisiona 95.9 0.013 2.8E-07 51.8 4.9 47 182-228 24-83 (287)
278 cd01672 TMPK Thymidine monopho 95.9 0.025 5.5E-07 46.5 6.4 25 206-230 2-26 (200)
279 KOG1532 GTPase XAB1, interacts 95.9 0.011 2.4E-07 51.1 4.2 33 202-234 17-49 (366)
280 cd01135 V_A-ATPase_B V/A-type 95.9 0.045 9.8E-07 47.8 8.1 85 204-292 69-174 (276)
281 PRK04182 cytidylate kinase; Pr 95.9 0.0083 1.8E-07 48.7 3.4 23 206-228 2-24 (180)
282 TIGR02640 gas_vesic_GvpN gas v 95.8 0.011 2.3E-07 51.7 4.2 25 205-229 22-46 (262)
283 TIGR03263 guanyl_kin guanylate 95.8 0.0067 1.5E-07 49.5 2.8 24 205-228 2-25 (180)
284 PRK00300 gmk guanylate kinase; 95.8 0.0081 1.8E-07 50.1 3.3 26 203-228 4-29 (205)
285 TIGR00764 lon_rel lon-related 95.8 0.023 5.1E-07 55.5 6.9 75 180-263 17-92 (608)
286 PRK04296 thymidine kinase; Pro 95.8 0.01 2.2E-07 49.1 3.9 34 205-238 3-36 (190)
287 PRK14954 DNA polymerase III su 95.8 0.013 2.8E-07 57.2 5.0 50 178-228 13-62 (620)
288 TIGR00763 lon ATP-dependent pr 95.8 0.014 2.9E-07 58.9 5.3 52 181-232 320-375 (775)
289 PRK06620 hypothetical protein; 95.8 0.0066 1.4E-07 51.3 2.6 23 205-227 45-67 (214)
290 PRK09111 DNA polymerase III su 95.8 0.012 2.7E-07 57.2 4.7 50 178-228 21-70 (598)
291 KOG1514 Origin recognition com 95.8 0.058 1.2E-06 52.4 9.0 108 178-292 393-516 (767)
292 PRK12727 flagellar biosynthesi 95.8 0.041 8.8E-07 52.4 8.0 28 203-230 349-376 (559)
293 PF06745 KaiC: KaiC; InterPro 95.8 0.014 3E-07 49.6 4.5 49 191-239 6-55 (226)
294 PRK13531 regulatory ATPase Rav 95.8 0.0099 2.1E-07 55.9 3.9 45 181-229 20-64 (498)
295 PRK13765 ATP-dependent proteas 95.8 0.02 4.3E-07 56.1 6.1 76 179-263 29-105 (637)
296 PF06309 Torsin: Torsin; Inte 95.8 0.021 4.6E-07 43.7 5.0 48 181-228 25-77 (127)
297 PRK09112 DNA polymerase III su 95.7 0.019 4.2E-07 52.2 5.6 53 176-229 18-70 (351)
298 COG1066 Sms Predicted ATP-depe 95.7 0.045 9.7E-07 50.1 7.8 95 189-291 78-175 (456)
299 PRK05439 pantothenate kinase; 95.7 0.017 3.7E-07 51.5 5.1 29 202-230 84-112 (311)
300 PRK12678 transcription termina 95.7 0.021 4.4E-07 54.7 5.8 29 204-232 416-444 (672)
301 PRK05922 type III secretion sy 95.7 0.024 5.3E-07 52.7 6.3 26 203-228 156-181 (434)
302 PF13521 AAA_28: AAA domain; P 95.7 0.0086 1.9E-07 48.1 2.9 21 207-227 2-22 (163)
303 KOG3347 Predicted nucleotide k 95.7 0.0083 1.8E-07 47.1 2.7 24 204-227 7-30 (176)
304 PRK15453 phosphoribulokinase; 95.7 0.019 4.2E-07 50.2 5.2 27 203-229 4-30 (290)
305 TIGR00176 mobB molybdopterin-g 95.7 0.0092 2E-07 47.7 3.1 34 206-239 1-35 (155)
306 COG0703 AroK Shikimate kinase 95.7 0.01 2.2E-07 48.0 3.3 87 205-291 3-102 (172)
307 PRK05537 bifunctional sulfate 95.7 0.017 3.7E-07 56.0 5.3 49 182-230 370-418 (568)
308 PF00154 RecA: recA bacterial 95.7 0.03 6.4E-07 50.2 6.4 91 192-291 40-138 (322)
309 PRK14493 putative bifunctional 95.7 0.018 3.9E-07 50.5 5.0 33 205-238 2-34 (274)
310 PRK04328 hypothetical protein; 95.7 0.024 5.2E-07 49.1 5.8 49 191-239 10-58 (249)
311 TIGR02173 cyt_kin_arch cytidyl 95.7 0.011 2.3E-07 47.7 3.3 23 206-228 2-24 (171)
312 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.01 2.2E-07 42.5 2.9 25 206-230 1-25 (99)
313 PRK13230 nitrogenase reductase 95.7 0.014 3E-07 51.3 4.3 27 205-231 2-28 (279)
314 cd02117 NifH_like This family 95.7 0.01 2.2E-07 50.0 3.3 26 205-230 1-26 (212)
315 TIGR01425 SRP54_euk signal rec 95.7 0.061 1.3E-06 50.1 8.6 29 203-231 99-127 (429)
316 cd02027 APSK Adenosine 5'-phos 95.7 0.01 2.2E-07 47.1 3.1 24 206-229 1-24 (149)
317 cd01122 GP4d_helicase GP4d_hel 95.7 0.045 9.7E-07 47.8 7.5 38 202-239 28-66 (271)
318 COG0194 Gmk Guanylate kinase [ 95.7 0.014 2.9E-07 47.8 3.8 25 204-228 4-28 (191)
319 cd02040 NifH NifH gene encodes 95.6 0.02 4.4E-07 49.8 5.3 26 205-230 2-27 (270)
320 PF01078 Mg_chelatase: Magnesi 95.6 0.02 4.3E-07 47.8 4.8 43 180-226 2-44 (206)
321 TIGR00073 hypB hydrogenase acc 95.6 0.021 4.7E-07 47.8 5.1 30 201-230 19-48 (207)
322 PRK08533 flagellar accessory p 95.6 0.031 6.7E-07 47.8 6.1 46 193-239 13-59 (230)
323 PRK14738 gmk guanylate kinase; 95.6 0.012 2.6E-07 49.4 3.4 27 201-227 10-36 (206)
324 PLN02318 phosphoribulokinase/u 95.6 0.017 3.8E-07 55.5 4.8 33 196-228 57-89 (656)
325 TIGR01420 pilT_fam pilus retra 95.6 0.03 6.6E-07 50.8 6.3 35 204-238 122-156 (343)
326 PRK10463 hydrogenase nickel in 95.6 0.03 6.6E-07 49.3 6.0 36 202-237 102-137 (290)
327 PRK13768 GTPase; Provisional 95.6 0.022 4.7E-07 49.5 5.1 26 205-230 3-28 (253)
328 PRK10078 ribose 1,5-bisphospho 95.6 0.01 2.3E-07 48.8 3.0 24 205-228 3-26 (186)
329 PRK14527 adenylate kinase; Pro 95.6 0.013 2.9E-07 48.4 3.6 26 203-228 5-30 (191)
330 PLN02200 adenylate kinase fami 95.5 0.014 3.1E-07 50.0 3.8 26 203-228 42-67 (234)
331 PRK05800 cobU adenosylcobinami 95.5 0.084 1.8E-06 42.9 8.1 23 206-228 3-25 (170)
332 COG0237 CoaE Dephospho-CoA kin 95.5 0.013 2.7E-07 49.0 3.3 23 204-226 2-24 (201)
333 cd01124 KaiC KaiC is a circadi 95.5 0.019 4.1E-07 46.9 4.4 33 207-239 2-34 (187)
334 TIGR03305 alt_F1F0_F1_bet alte 95.5 0.052 1.1E-06 50.8 7.6 85 204-292 138-240 (449)
335 PRK09435 membrane ATPase/prote 95.5 0.024 5.3E-07 51.1 5.3 30 201-230 53-82 (332)
336 PF14532 Sigma54_activ_2: Sigm 95.5 0.01 2.3E-07 46.3 2.6 44 184-227 1-44 (138)
337 PRK08149 ATP synthase SpaL; Va 95.5 0.047 1E-06 50.8 7.2 85 203-292 150-249 (428)
338 TIGR00554 panK_bact pantothena 95.5 0.017 3.6E-07 51.1 4.1 28 202-229 60-87 (290)
339 TIGR03498 FliI_clade3 flagella 95.5 0.04 8.6E-07 51.2 6.8 85 203-292 139-238 (418)
340 cd00984 DnaB_C DnaB helicase C 95.5 0.049 1.1E-06 46.6 7.0 40 200-239 9-49 (242)
341 cd00544 CobU Adenosylcobinamid 95.5 0.089 1.9E-06 42.7 8.0 77 207-291 2-80 (169)
342 TIGR00041 DTMP_kinase thymidyl 95.5 0.048 1E-06 45.0 6.7 26 205-230 4-29 (195)
343 cd01130 VirB11-like_ATPase Typ 95.5 0.024 5.1E-07 46.7 4.7 27 203-229 24-50 (186)
344 cd01136 ATPase_flagellum-secre 95.5 0.06 1.3E-06 48.4 7.6 27 203-229 68-94 (326)
345 COG1124 DppF ABC-type dipeptid 95.5 0.012 2.7E-07 49.9 3.0 25 202-226 31-55 (252)
346 PRK13695 putative NTPase; Prov 95.4 0.02 4.3E-07 46.6 4.2 24 206-229 2-25 (174)
347 cd01428 ADK Adenylate kinase ( 95.4 0.013 2.9E-07 48.2 3.2 22 207-228 2-23 (194)
348 PRK05342 clpX ATP-dependent pr 95.4 0.024 5.1E-07 52.7 5.1 51 182-232 72-136 (412)
349 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.071 1.5E-06 45.2 7.7 48 192-239 4-51 (224)
350 cd02034 CooC The accessory pro 95.4 0.029 6.2E-07 42.6 4.7 32 207-238 2-33 (116)
351 PRK06761 hypothetical protein; 95.4 0.021 4.6E-07 50.2 4.5 27 205-231 4-30 (282)
352 COG1419 FlhF Flagellar GTP-bin 95.4 0.12 2.5E-06 47.5 9.3 37 203-239 202-240 (407)
353 PRK13233 nifH nitrogenase redu 95.4 0.022 4.9E-07 49.9 4.7 26 205-230 3-28 (275)
354 PRK08154 anaerobic benzoate ca 95.4 0.022 4.8E-07 50.9 4.7 27 202-228 131-157 (309)
355 PRK06002 fliI flagellum-specif 95.4 0.049 1.1E-06 50.9 7.0 85 203-292 164-262 (450)
356 COG1223 Predicted ATPase (AAA+ 95.4 0.017 3.6E-07 49.8 3.6 48 180-227 120-174 (368)
357 PF08477 Miro: Miro-like prote 95.4 0.015 3.3E-07 43.6 3.2 21 207-227 2-22 (119)
358 PRK13236 nitrogenase reductase 95.4 0.028 6.1E-07 49.9 5.3 31 201-231 3-33 (296)
359 PRK12724 flagellar biosynthesi 95.4 0.084 1.8E-06 49.0 8.4 25 204-228 223-247 (432)
360 TIGR02655 circ_KaiC circadian 95.4 0.053 1.1E-06 51.6 7.4 50 190-239 7-57 (484)
361 PHA02244 ATPase-like protein 95.4 0.024 5.2E-07 51.6 4.7 27 205-231 120-146 (383)
362 KOG1970 Checkpoint RAD17-RFC c 95.4 0.083 1.8E-06 50.0 8.3 49 188-238 89-142 (634)
363 PRK14950 DNA polymerase III su 95.4 0.024 5.3E-07 55.2 5.1 51 178-229 13-63 (585)
364 PRK09825 idnK D-gluconate kina 95.4 0.016 3.4E-07 47.4 3.3 25 205-229 4-28 (176)
365 PF13604 AAA_30: AAA domain; P 95.4 0.041 8.9E-07 45.8 5.9 40 189-231 6-45 (196)
366 smart00072 GuKc Guanylate kina 95.3 0.015 3.3E-07 47.8 3.2 30 204-233 2-31 (184)
367 TIGR02902 spore_lonB ATP-depen 95.3 0.019 4.2E-07 55.2 4.4 46 180-227 64-109 (531)
368 PRK14737 gmk guanylate kinase; 95.3 0.016 3.5E-07 47.8 3.3 26 203-228 3-28 (186)
369 PRK10787 DNA-binding ATP-depen 95.3 0.024 5.3E-07 57.0 5.1 52 181-232 322-377 (784)
370 COG1763 MobB Molybdopterin-gua 95.3 0.017 3.6E-07 46.4 3.2 28 204-231 2-29 (161)
371 cd02022 DPCK Dephospho-coenzym 95.3 0.013 2.9E-07 47.9 2.7 21 206-226 1-21 (179)
372 KOG0727 26S proteasome regulat 95.3 0.021 4.5E-07 48.9 3.9 46 182-227 156-212 (408)
373 PRK14532 adenylate kinase; Pro 95.3 0.015 3.2E-07 47.9 3.0 22 207-228 3-24 (188)
374 TIGR01650 PD_CobS cobaltochela 95.3 0.037 7.9E-07 49.6 5.6 47 182-232 46-92 (327)
375 PRK00698 tmk thymidylate kinas 95.3 0.059 1.3E-06 44.7 6.7 27 204-230 3-29 (205)
376 PRK06305 DNA polymerase III su 95.3 0.029 6.3E-07 52.9 5.2 50 178-228 14-63 (451)
377 PRK06936 type III secretion sy 95.3 0.037 8.1E-07 51.6 5.8 86 202-292 160-260 (439)
378 PLN03186 DNA repair protein RA 95.3 0.048 1E-06 49.4 6.4 68 190-262 109-182 (342)
379 cd02032 Bchl_like This family 95.3 0.03 6.5E-07 48.8 5.0 26 206-231 2-27 (267)
380 PRK13232 nifH nitrogenase redu 95.3 0.028 6E-07 49.3 4.8 26 205-230 2-27 (273)
381 PRK14531 adenylate kinase; Pro 95.2 0.019 4.2E-07 47.1 3.5 23 206-228 4-26 (183)
382 TIGR00750 lao LAO/AO transport 95.2 0.05 1.1E-06 48.5 6.4 31 200-230 30-60 (300)
383 PRK05973 replicative DNA helic 95.2 0.068 1.5E-06 45.8 6.9 38 202-239 62-99 (237)
384 cd00820 PEPCK_HprK Phosphoenol 95.2 0.021 4.5E-07 42.6 3.3 23 203-225 14-36 (107)
385 PRK06995 flhF flagellar biosyn 95.2 0.12 2.6E-06 48.9 9.1 26 204-229 256-281 (484)
386 PHA02530 pseT polynucleotide k 95.2 0.018 3.8E-07 51.1 3.4 24 205-228 3-26 (300)
387 cd03114 ArgK-like The function 95.2 0.028 6E-07 44.6 4.2 26 206-231 1-26 (148)
388 COG1703 ArgK Putative periplas 95.2 0.029 6.3E-07 49.2 4.6 39 193-231 40-78 (323)
389 PF07693 KAP_NTPase: KAP famil 95.2 0.092 2E-06 47.0 8.1 42 190-231 5-47 (325)
390 KOG0989 Replication factor C, 95.2 0.027 5.9E-07 49.5 4.4 59 178-238 33-93 (346)
391 COG0378 HypB Ni2+-binding GTPa 95.2 0.032 7E-07 45.9 4.6 37 204-240 13-49 (202)
392 cd03116 MobB Molybdenum is an 95.2 0.036 7.8E-07 44.5 4.8 27 205-231 2-28 (159)
393 TIGR03496 FliI_clade1 flagella 95.2 0.061 1.3E-06 49.9 7.0 26 203-228 136-161 (411)
394 PRK10416 signal recognition pa 95.2 0.037 8E-07 49.7 5.4 28 203-230 113-140 (318)
395 TIGR02016 BchX chlorophyllide 95.2 0.029 6.2E-07 49.9 4.6 27 205-231 1-27 (296)
396 PRK09302 circadian clock prote 95.2 0.082 1.8E-06 50.7 8.1 52 188-239 15-67 (509)
397 PRK06820 type III secretion sy 95.2 0.078 1.7E-06 49.6 7.6 26 203-228 162-187 (440)
398 PRK05563 DNA polymerase III su 95.2 0.033 7.1E-07 54.0 5.3 51 177-228 12-62 (559)
399 COG4240 Predicted kinase [Gene 95.2 0.072 1.6E-06 45.0 6.6 37 202-238 48-85 (300)
400 PLN02348 phosphoribulokinase 95.2 0.024 5.2E-07 51.9 4.2 30 201-230 46-75 (395)
401 PRK08356 hypothetical protein; 95.2 0.021 4.5E-07 47.5 3.5 22 204-225 5-26 (195)
402 KOG1942 DNA helicase, TBP-inte 95.2 0.044 9.6E-07 48.0 5.5 56 179-234 36-94 (456)
403 PRK01184 hypothetical protein; 95.1 0.019 4.1E-07 47.1 3.2 22 205-227 2-23 (184)
404 COG0464 SpoVK ATPases of the A 95.1 0.031 6.7E-07 53.3 5.1 32 202-233 274-305 (494)
405 PTZ00088 adenylate kinase 1; P 95.1 0.019 4.2E-07 49.0 3.3 22 207-228 9-30 (229)
406 PRK14490 putative bifunctional 95.1 0.028 6.1E-07 51.6 4.6 34 203-236 4-37 (369)
407 PRK12338 hypothetical protein; 95.1 0.021 4.5E-07 51.0 3.6 25 204-228 4-28 (319)
408 TIGR02974 phageshock_pspF psp 95.1 0.11 2.4E-06 46.8 8.4 46 183-228 1-46 (329)
409 PRK07471 DNA polymerase III su 95.1 0.038 8.3E-07 50.6 5.4 51 177-228 15-65 (365)
410 TIGR00455 apsK adenylylsulfate 95.1 0.04 8.8E-07 45.1 5.1 28 202-229 16-43 (184)
411 PRK13185 chlL protochlorophyll 95.1 0.043 9.4E-07 47.9 5.5 27 205-231 3-29 (270)
412 cd02029 PRK_like Phosphoribulo 95.1 0.031 6.7E-07 48.6 4.4 25 206-230 1-25 (277)
413 PRK13407 bchI magnesium chelat 95.1 0.026 5.6E-07 51.0 4.1 50 176-228 3-53 (334)
414 PF09848 DUF2075: Uncharacteri 95.1 0.056 1.2E-06 49.3 6.4 35 205-239 2-38 (352)
415 PRK07721 fliI flagellum-specif 95.1 0.1 2.2E-06 48.9 8.0 27 202-228 156-182 (438)
416 PRK08099 bifunctional DNA-bind 95.1 0.019 4.2E-07 53.1 3.3 27 202-228 217-243 (399)
417 PRK13235 nifH nitrogenase redu 95.0 0.028 6.1E-07 49.2 4.2 26 205-230 2-27 (274)
418 PF07088 GvpD: GvpD gas vesicl 95.0 0.046 1E-06 49.8 5.5 36 203-238 9-44 (484)
419 PLN02165 adenylate isopentenyl 95.0 0.021 4.7E-07 51.2 3.4 28 202-229 41-68 (334)
420 PRK14721 flhF flagellar biosyn 95.0 0.19 4.1E-06 46.8 9.7 25 203-227 190-214 (420)
421 PF00142 Fer4_NifH: 4Fe-4S iro 95.0 0.03 6.5E-07 48.4 4.1 34 205-238 1-34 (273)
422 COG0714 MoxR-like ATPases [Gen 95.0 0.033 7.1E-07 50.3 4.6 49 182-234 25-73 (329)
423 PRK07133 DNA polymerase III su 95.0 0.031 6.7E-07 55.2 4.6 50 178-228 15-64 (725)
424 TIGR01026 fliI_yscN ATPase Fli 95.0 0.076 1.6E-06 49.8 7.0 26 203-228 162-187 (440)
425 TIGR01040 V-ATPase_V1_B V-type 95.0 0.12 2.6E-06 48.4 8.2 26 204-229 141-166 (466)
426 TIGR02655 circ_KaiC circadian 95.0 0.052 1.1E-06 51.7 6.0 52 188-239 247-298 (484)
427 PLN02796 D-glycerate 3-kinase 94.9 0.024 5.3E-07 51.1 3.5 28 203-230 99-126 (347)
428 PF03796 DnaB_C: DnaB-like hel 94.9 0.13 2.9E-06 44.6 8.1 67 190-263 6-73 (259)
429 PRK02496 adk adenylate kinase; 94.9 0.024 5.3E-07 46.4 3.3 23 206-228 3-25 (184)
430 PRK06647 DNA polymerase III su 94.9 0.037 8E-07 53.6 4.9 50 178-228 13-62 (563)
431 TIGR01281 DPOR_bchL light-inde 94.9 0.043 9.3E-07 47.8 5.0 25 206-230 2-26 (268)
432 PF03193 DUF258: Protein of un 94.9 0.039 8.5E-07 44.3 4.3 33 189-226 25-57 (161)
433 CHL00081 chlI Mg-protoporyphyr 94.9 0.03 6.5E-07 50.8 4.0 49 177-227 13-61 (350)
434 PF00005 ABC_tran: ABC transpo 94.9 0.02 4.4E-07 44.3 2.6 24 204-227 11-34 (137)
435 TIGR03497 FliI_clade2 flagella 94.9 0.081 1.8E-06 49.2 6.9 27 202-228 135-161 (413)
436 TIGR00382 clpX endopeptidase C 94.9 0.037 8.1E-07 51.3 4.7 52 181-232 77-144 (413)
437 TIGR01351 adk adenylate kinase 94.9 0.023 5E-07 47.7 3.1 22 207-228 2-23 (210)
438 KOG0726 26S proteasome regulat 94.9 0.025 5.5E-07 49.4 3.3 47 181-227 185-242 (440)
439 PRK00279 adk adenylate kinase; 94.9 0.025 5.4E-07 47.7 3.3 23 206-228 2-24 (215)
440 PRK14723 flhF flagellar biosyn 94.9 0.14 3E-06 51.1 8.8 25 204-228 185-209 (767)
441 COG0542 clpA ATP-binding subun 94.9 0.033 7E-07 55.3 4.4 48 181-230 170-217 (786)
442 TIGR00101 ureG urease accessor 94.9 0.043 9.4E-07 45.8 4.6 27 206-232 3-29 (199)
443 PF01926 MMR_HSR1: 50S ribosom 94.9 0.025 5.4E-07 42.5 2.9 20 207-226 2-21 (116)
444 TIGR01041 ATP_syn_B_arch ATP s 94.8 0.091 2E-06 49.4 7.1 87 204-292 141-246 (458)
445 PF07724 AAA_2: AAA domain (Cd 94.8 0.071 1.5E-06 43.4 5.7 42 204-246 3-45 (171)
446 KOG0733 Nuclear AAA ATPase (VC 94.8 0.021 4.5E-07 54.6 2.8 25 204-228 545-569 (802)
447 TIGR00017 cmk cytidylate kinas 94.8 0.031 6.6E-07 47.4 3.6 25 205-229 3-27 (217)
448 PF00406 ADK: Adenylate kinase 94.8 0.025 5.5E-07 44.7 2.9 20 209-228 1-20 (151)
449 COG1100 GTPase SAR1 and relate 94.8 0.022 4.7E-07 47.8 2.6 23 205-227 6-28 (219)
450 KOG0730 AAA+-type ATPase [Post 94.8 0.035 7.6E-07 53.4 4.2 52 182-233 435-497 (693)
451 cd04139 RalA_RalB RalA/RalB su 94.8 0.026 5.6E-07 44.7 2.9 21 206-226 2-22 (164)
452 PRK13231 nitrogenase reductase 94.8 0.041 8.9E-07 47.9 4.4 33 205-239 3-35 (264)
453 PF00437 T2SE: Type II/IV secr 94.8 0.06 1.3E-06 47.0 5.5 49 183-231 106-154 (270)
454 PF02562 PhoH: PhoH-like prote 94.7 0.051 1.1E-06 45.5 4.7 48 188-239 7-56 (205)
455 PRK07594 type III secretion sy 94.7 0.051 1.1E-06 50.6 5.2 26 203-228 154-179 (433)
456 CHL00072 chlL photochlorophyll 94.7 0.039 8.4E-07 48.9 4.2 25 207-231 3-27 (290)
457 TIGR03600 phage_DnaB phage rep 94.7 0.13 2.7E-06 48.2 7.8 71 183-260 174-245 (421)
458 PF02367 UPF0079: Uncharacteri 94.7 0.059 1.3E-06 41.3 4.6 27 202-228 13-39 (123)
459 PRK09281 F0F1 ATP synthase sub 94.7 0.084 1.8E-06 50.2 6.5 50 204-259 162-214 (502)
460 COG2019 AdkA Archaeal adenylat 94.7 0.038 8.2E-07 44.4 3.5 25 204-228 4-28 (189)
461 PRK14528 adenylate kinase; Pro 94.7 0.034 7.3E-07 45.8 3.5 24 205-228 2-25 (186)
462 cd03225 ABC_cobalt_CbiO_domain 94.7 0.03 6.6E-07 46.9 3.3 25 203-227 26-50 (211)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.028 6.2E-07 47.3 3.1 25 203-227 29-53 (218)
464 TIGR02782 TrbB_P P-type conjug 94.7 0.062 1.3E-06 47.8 5.4 27 204-230 132-158 (299)
465 PRK14948 DNA polymerase III su 94.6 0.05 1.1E-06 53.3 5.0 50 179-229 14-63 (620)
466 KOG1051 Chaperone HSP104 and r 94.6 0.24 5.2E-06 50.0 9.7 100 181-292 562-668 (898)
467 COG1157 FliI Flagellar biosynt 94.6 0.094 2E-06 48.1 6.3 96 189-291 150-260 (441)
468 PRK14965 DNA polymerase III su 94.6 0.054 1.2E-06 52.7 5.1 50 178-228 13-62 (576)
469 PRK06793 fliI flagellum-specif 94.6 0.073 1.6E-06 49.6 5.8 53 203-260 155-207 (432)
470 PF01935 DUF87: Domain of unkn 94.6 0.055 1.2E-06 46.0 4.7 25 205-229 24-48 (229)
471 COG1116 TauB ABC-type nitrate/ 94.6 0.031 6.8E-07 47.7 3.1 25 202-226 27-51 (248)
472 TIGR02030 BchI-ChlI magnesium 94.6 0.054 1.2E-06 49.0 4.8 46 181-228 4-49 (337)
473 PRK09099 type III secretion sy 94.6 0.1 2.2E-06 48.9 6.7 27 202-228 161-187 (441)
474 PRK11608 pspF phage shock prot 94.6 0.047 1E-06 49.2 4.4 47 181-227 6-52 (326)
475 PRK05688 fliI flagellum-specif 94.5 0.083 1.8E-06 49.5 6.1 25 203-227 167-191 (451)
476 TIGR01817 nifA Nif-specific re 94.5 0.079 1.7E-06 51.1 6.2 50 179-228 194-243 (534)
477 KOG3354 Gluconate kinase [Carb 94.5 0.042 9.1E-07 43.6 3.4 29 204-232 12-40 (191)
478 cd02026 PRK Phosphoribulokinas 94.5 0.031 6.8E-07 49.0 3.1 25 206-230 1-25 (273)
479 TIGR01166 cbiO cobalt transpor 94.5 0.033 7.1E-07 45.9 3.1 25 203-227 17-41 (190)
480 PRK14730 coaE dephospho-CoA ki 94.5 0.036 7.8E-07 46.1 3.3 23 205-227 2-24 (195)
481 KOG0738 AAA+-type ATPase [Post 94.5 0.033 7.1E-07 50.5 3.2 49 181-229 212-270 (491)
482 TIGR00960 3a0501s02 Type II (G 94.5 0.032 6.9E-07 47.0 3.0 25 203-227 28-52 (216)
483 PLN02772 guanylate kinase 94.5 0.11 2.3E-06 47.7 6.6 30 203-232 134-163 (398)
484 CHL00059 atpA ATP synthase CF1 94.5 0.11 2.4E-06 48.9 6.8 52 204-259 141-193 (485)
485 PRK05748 replicative DNA helic 94.5 0.14 3E-06 48.4 7.5 71 183-260 183-254 (448)
486 CHL00195 ycf46 Ycf46; Provisio 94.5 0.062 1.3E-06 51.1 5.1 30 202-231 257-286 (489)
487 TIGR03324 alt_F1F0_F1_al alter 94.5 0.17 3.6E-06 48.0 7.9 83 204-292 162-262 (497)
488 PRK06731 flhF flagellar biosyn 94.4 0.17 3.7E-06 44.3 7.4 27 203-229 74-100 (270)
489 PRK07960 fliI flagellum-specif 94.4 0.065 1.4E-06 50.1 5.0 26 203-228 174-199 (455)
490 PRK06851 hypothetical protein; 94.4 0.039 8.4E-07 50.4 3.5 36 204-239 214-250 (367)
491 PRK04220 2-phosphoglycerate ki 94.4 0.04 8.7E-07 48.8 3.5 26 203-228 91-116 (301)
492 cd03269 ABC_putative_ATPase Th 94.4 0.037 8.1E-07 46.3 3.2 25 203-227 25-49 (210)
493 cd03261 ABC_Org_Solvent_Resist 94.4 0.036 7.8E-07 47.3 3.1 25 203-227 25-49 (235)
494 PRK06851 hypothetical protein; 94.4 0.068 1.5E-06 48.8 5.0 37 203-239 29-66 (367)
495 PRK07429 phosphoribulokinase; 94.4 0.067 1.5E-06 48.2 5.0 29 202-230 6-34 (327)
496 COG1126 GlnQ ABC-type polar am 94.4 0.037 7.9E-07 46.4 3.0 25 202-226 26-50 (240)
497 COG2842 Uncharacterized ATPase 94.4 0.18 3.9E-06 44.3 7.3 102 180-291 71-172 (297)
498 PRK14494 putative molybdopteri 94.4 0.047 1E-06 46.5 3.7 33 205-237 2-35 (229)
499 cd03229 ABC_Class3 This class 94.3 0.04 8.6E-07 45.0 3.2 25 203-227 25-49 (178)
500 PRK13234 nifH nitrogenase redu 94.3 0.069 1.5E-06 47.4 4.9 28 203-230 3-30 (295)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-52 Score=430.23 Aligned_cols=281 Identities=40% Similarity=0.662 Sum_probs=244.6
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|||||||+|+|+++.|++||+.+|.++||.+|.|+ ++.+|+.+..++.+||++|+++|+|+|++|++|.||++||+++
T Consensus 12 ~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i 90 (1153)
T PLN03210 12 VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEI 90 (1153)
T ss_pred CCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHH
Confidence 599999999999999999999999999999999987 7999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEeEEEEecccccccccccHHHHHHHHHhhh-hhhHHHHHHHHHHhhcccCCCCCCCccccccccCCCcc
Q 040979 81 LDSKKMNGQIVIPVFYQVDPSDVRKQKGSFGEAFIHLENNF-AGKVKKWRDAVTEASNLSGYDSTESRLCLLFWSGNKKC 159 (292)
Q Consensus 81 ~~~~~~~~~~vipif~~~~~~~vr~~~g~~~~~~~~~~~~~-~~~v~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (292)
+++++..++.|+||||+|+|++||+|+|.|+++|.++.++. .+++++|+.||.++++++|++...+.+ |+++
T Consensus 91 ~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~-------E~~~ 163 (1153)
T PLN03210 91 VRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN-------EAKM 163 (1153)
T ss_pred HHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC-------HHHH
Confidence 99999999999999999999999999999999999987664 368999999999999999998877666 9999
Q ss_pred ccCCccccccccccCCCCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 160 EFFPLPYISKKLEDASDLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 160 ~~~i~~~v~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+++|+..|.+.+.. .++.+..+++|++.+++++..+|..+.+++++++|+||||+||||||+++|+++..+|+..+|+.
T Consensus 164 i~~Iv~~v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 164 IEEIANDVLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred HHHHHHHHHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 99999999999877 66777889999999999999999877788999999999999999999999999999999999885
Q ss_pred cc--cccc---cc-----c-cHHHHHHHHHHHHhccccCCCCCCcHHHHHHHhCCceEEEEEeC
Q 040979 240 NV--RDES---NK-----K-GVVHVRDEVICEVLEENLKIGTSIIPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 240 ~~--~~~~---~~-----~-~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDD 292 (292)
.. .... .. . ....++.+++..+..... ... .....+++.|.++|+||||||
T Consensus 243 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~~~-~~~~~~~~~L~~krvLLVLDd 304 (1153)
T PLN03210 243 RAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-IKI-YHLGAMEERLKHRKVLIFIDD 304 (1153)
T ss_pred ccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-ccc-CCHHHHHHHHhCCeEEEEEeC
Confidence 31 1110 00 1 123456666666544322 111 123668899999999999998
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1e-38 Score=255.84 Aligned_cols=151 Identities=28% Similarity=0.488 Sum_probs=135.0
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|||||||+|.|++..|++||+.+|+++||++|+|++++.+|+.+.+.|.+||++|+++|+|||++|++|.||++||+++
T Consensus 26 ~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I 105 (187)
T PLN03194 26 PCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALI 105 (187)
T ss_pred CCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEeEEEEecccccccc-cccHHHHHHHHHhhhhhhHHHHHHHHHHhhcccCCCCCC-CccccccccCCCc
Q 040979 81 LDSKKMNGQIVIPVFYQVDPSDVRKQ-KGSFGEAFIHLENNFAGKVKKWRDAVTEASNLSGYDSTE-SRLCLLFWSGNKK 158 (292)
Q Consensus 81 ~~~~~~~~~~vipif~~~~~~~vr~~-~g~~~~~~~~~~~~~~~~v~~w~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (292)
+++. ..|+||||+++|++||+| .+. ...+++++|+.||.+++++.|+.+.. ..+ +++
T Consensus 106 ~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~-------e~e 164 (187)
T PLN03194 106 MESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN-------WSE 164 (187)
T ss_pred HHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCCCCCC-------HHH
Confidence 9864 479999999999999997 332 12468999999999999999987653 233 888
Q ss_pred cccCCccccccccc
Q 040979 159 CEFFPLPYISKKLE 172 (292)
Q Consensus 159 ~~~~i~~~v~~~~~ 172 (292)
++++|+..|.+++.
T Consensus 165 ~i~~iv~~v~k~l~ 178 (187)
T PLN03194 165 VVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 89888888877653
No 3
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.86 E-value=2.2e-21 Score=153.30 Aligned_cols=134 Identities=40% Similarity=0.676 Sum_probs=110.6
Q ss_pred CCcEEEcccc-ccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHH
Q 040979 1 KYEVFLNFRG-KDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVK 79 (292)
Q Consensus 1 ~~dvFiSy~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~ 79 (292)
.|||||||++ .+....|+.+|...|...|+.+|.|++.. |.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 4999999999 44456899999999999999999987543 33333499999999999999999999999999999999
Q ss_pred HHHhhhc-CCcEEEeEEEEecccccccccccHHHHHHHHHhhhhhhH--HHHHHHHHHhh
Q 040979 80 ILDSKKM-NGQIVIPVFYQVDPSDVRKQKGSFGEAFIHLENNFAGKV--KKWRDAVTEAS 136 (292)
Q Consensus 80 ~~~~~~~-~~~~vipif~~~~~~~vr~~~g~~~~~~~~~~~~~~~~v--~~w~~~l~~~~ 136 (292)
+...... ....||||+++..|..+..+.+.+...+..+.....+.. ..|+..+..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 9988744 567999999999888888898889888877744444433 58888776654
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.86 E-value=1.2e-22 Score=160.94 Aligned_cols=130 Identities=34% Similarity=0.608 Sum_probs=107.4
Q ss_pred EEEccccccCccchHHHHHHHHHhC--CCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHHH
Q 040979 4 VFLNFRGKDTRNGFTSHLAAALHRK--QIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKIL 81 (292)
Q Consensus 4 vFiSy~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 81 (292)
|||||++.+.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999333456999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--cEEEeEEEEecccccc-cccccHHHHHHHHHhhhh-----hhHHHHHHHHH
Q 040979 82 DSKKMNG--QIVIPVFYQVDPSDVR-KQKGSFGEAFIHLENNFA-----GKVKKWRDAVT 133 (292)
Q Consensus 82 ~~~~~~~--~~vipif~~~~~~~vr-~~~g~~~~~~~~~~~~~~-----~~v~~w~~~l~ 133 (292)
.+....+ ..|+|+||++.+.+++ .+.+.+...+.......+ .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996544 8999999999999999 576666665555433322 35778887653
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.72 E-value=2.4e-18 Score=128.50 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=76.8
Q ss_pred EEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHHHHh
Q 040979 4 VFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKILDS 83 (292)
Q Consensus 4 vFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~ 83 (292)
|||||+++|. .++++|...|+++|+++|+|. ++.+|+.+.+.|.++|++|++.|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 8999999996 789999999999999999997 999999999999999999999999999999999999999998843
Q ss_pred hhcCCcEEEeEEEEeccccc
Q 040979 84 KKMNGQIVIPVFYQVDPSDV 103 (292)
Q Consensus 84 ~~~~~~~vipif~~~~~~~v 103 (292)
.+..++||. +++.++
T Consensus 77 ---~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 77 ---RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp ---TSESEEEEE--CSGGGS
T ss_pred ---CCCEEEEEE--ECCcCC
Confidence 445799996 444443
No 6
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.68 E-value=2e-16 Score=139.67 Aligned_cols=103 Identities=31% Similarity=0.473 Sum_probs=86.2
Q ss_pred cchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH--HhCCCCceEEEeccccccccccHHHHHHHHHHHHhc
Q 040979 186 LNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ--ISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLE 263 (292)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 263 (292)
||.++++|.+.|....++.++|+|+||||+||||||..++++ ++.+|+.++|+. ++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 678999999998865578999999999999999999999997 888999999998 66667779999999999987
Q ss_pred cccCC-C--CCC-cHHHHHHHhCCceEEEEEeC
Q 040979 264 ENLKI-G--TSI-IPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 264 ~~~~~-~--~~~-~~~~l~~~L~~kr~LlVLDD 292 (292)
..... . +.+ ....+++.|.++++||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDd 109 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDD 109 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEE
T ss_pred cccccccccccccccccchhhhccccceeeeee
Confidence 64433 1 222 68889999999999999997
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.61 E-value=2.6e-15 Score=149.33 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=89.8
Q ss_pred cccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH---HhCCCCceEEEeccccccccccHHHHHHHHHHH
Q 040979 184 VGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ---ISGDFQGKCFMRNVRDESNKKGVVHVRDEVICE 260 (292)
Q Consensus 184 ~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~ 260 (292)
||.+..++.+.+.|...+. .+++|+||||+||||||+.++++ +..+|+..+|++ +|+.++...++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999888874433 89999999999999999999994 667899999999 99999999999999999
Q ss_pred HhccccCCCC--CC-cHHHHHHHhCCceEEEEEeC
Q 040979 261 VLEENLKIGT--SI-IPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 261 l~~~~~~~~~--~~-~~~~l~~~L~~kr~LlVLDD 292 (292)
++.......+ .+ ++..+.+.|++||+||||||
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDD 269 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDD 269 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEec
Confidence 9875553322 24 88899999999999999998
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.85 E-value=2.8e-08 Score=90.84 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=74.7
Q ss_pred CCCCCCCccccchhHHHHHHhhhh--cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC------ceEEEecccccccc
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRL--ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ------GKCFMRNVRDESNK 247 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~------~~~~~~~~~~~~~~ 247 (292)
+.+.|..++||+.+++.|...+.. .+.....+.|+|++|+|||++++.+++++..... ..+++. ....
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 345566899999999999988863 2334567899999999999999999997653322 234443 3334
Q ss_pred ccHHHHHHHHHHHHhc--cccCCCCC--C-cHHHHHHHhC--CceEEEEEeC
Q 040979 248 KGVVHVRDEVICEVLE--ENLKIGTS--I-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 248 ~~~~~~~~~il~~l~~--~~~~~~~~--~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
.+...++..++.++.. ........ . ....+.+.+. +++++||||+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE 137 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDE 137 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 5667888888888842 11111111 1 3344555553 4678999996
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.84 E-value=3.3e-08 Score=91.29 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCCCCCCccccchhHHHHHHhhhhc--CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC--ceEEEeccccccccccHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLE--LHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ--GKCFMRNVRDESNKKGVV 251 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~ 251 (292)
+...|..++||+.+++.+...+... +.....+.|+|++|+|||++++.+++++..... ..+++. .....+..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHH
Confidence 3345678999999999999888532 334456789999999999999999998765432 233343 33345677
Q ss_pred HHHHHHHHHHhccccCCC--CCC-cHHHHHHHhC--CceEEEEEeC
Q 040979 252 HVRDEVICEVLEENLKIG--TSI-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 252 ~~~~~il~~l~~~~~~~~--~~~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
.++..++.++........ +.+ ....+.+.+. +++++||||+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE 146 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDD 146 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 888889888865222111 112 4555666665 3568999996
No 10
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.83 E-value=1.1e-08 Score=92.56 Aligned_cols=91 Identities=23% Similarity=0.465 Sum_probs=76.7
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCc--------Cchh
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYA--------SSKW 72 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~--------~S~w 72 (292)
..||||||+..-. ...++-|...|.-+||+||+|-+.+..| .+.+.+.+.|..++.+|+|+||+.+ .-.|
T Consensus 612 q~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AG-KFdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDW 689 (832)
T KOG3678|consen 612 QIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAG-KFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDW 689 (832)
T ss_pred CcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhcc-cccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHH
Confidence 3699999987643 4689999999999999999999887777 4668888999999999999999754 3468
Q ss_pred hHHHHHHHHHhhhcCCcEEEeEEEE
Q 040979 73 CLNELVKILDSKKMNGQIVIPVFYQ 97 (292)
Q Consensus 73 c~~El~~~~~~~~~~~~~vipif~~ 97 (292)
...|+..+++++++ |+|||..
T Consensus 690 VHKEl~~Afe~~KN----IiPI~D~ 710 (832)
T KOG3678|consen 690 VHKELKCAFEHQKN----IIPIFDT 710 (832)
T ss_pred HHHHHHHHHHhcCC----eeeeecc
Confidence 88999999988854 9999865
No 11
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=5.9e-08 Score=75.19 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC-----CCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCC-cHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD-----FQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSI-IPPR 276 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~-~~~~ 276 (292)
+.+.+.|+|.+|+|||++++.+.+..... -...+|+. .....+...+...++..++.......+.+ +.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 35788999999999999999999975432 23445665 55555889999999999987655412222 5577
Q ss_pred HHHHhCCce-EEEEEeC
Q 040979 277 IQKRLQLMK-VLIVLDD 292 (292)
Q Consensus 277 l~~~L~~kr-~LlVLDD 292 (292)
+.+.+...+ .+||+||
T Consensus 79 ~~~~l~~~~~~~lviDe 95 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDE 95 (131)
T ss_dssp HHHHHHHCTEEEEEEET
T ss_pred HHHHHHhcCCeEEEEeC
Confidence 777776654 5999997
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=8.6e-08 Score=78.69 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=35.1
Q ss_pred CccccchhHHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 182 GFVGLNSRIEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.|+||+.+++.+...+. ......+.+.|+|.+|+|||+|.+.++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999995 234457999999999999999999999977665
No 13
>PTZ00202 tuzin; Provisional
Probab=98.59 E-value=5.2e-07 Score=82.50 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCCCCCCccccchhHHHHHHhhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHH
Q 040979 175 SDLTDLDGFVGLNSRIEDLKSLLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 175 ~~~~~~~~~~gr~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 253 (292)
..|.+...|+||+.++..+...|.. +....+++.|.|++|+|||||++.+..... ..+++. +..+..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~v------Nprg~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFV------DVRGTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEE------CCCCHHHH
Confidence 5677888999999999999998863 333467999999999999999999997653 224443 22367999
Q ss_pred HHHHHHHHhc
Q 040979 254 RDEVICEVLE 263 (292)
Q Consensus 254 ~~~il~~l~~ 263 (292)
+..++.+|+.
T Consensus 326 Lr~LL~ALGV 335 (550)
T PTZ00202 326 LRSVVKALGV 335 (550)
T ss_pred HHHHHHHcCC
Confidence 9999999986
No 14
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.58 E-value=1.3e-07 Score=73.58 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=47.4
Q ss_pred CcEEEccccccCccchHHHHHHHHHhC-------CCeE----------EeeCCCCCCCCcchHHHHHHHhhcceEEEEEc
Q 040979 2 YEVFLNFRGKDTRNGFTSHLAAALHRK-------QIQF----------FIDDEELRKGDEISPAFSNAIQNSDISIVIFS 64 (292)
Q Consensus 2 ~dvFiSy~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 64 (292)
|.|||||++.|.. ..++.|...+... .+.. +.+..+......+...|.++|..|.++|+++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999874 2678787777763 2211 11222223345889999999999999999999
Q ss_pred cCCcCchhhHHHHHHHHHhhhcCCcEEEeE
Q 040979 65 KDYASSKWCLNELVKILDSKKMNGQIVIPV 94 (292)
Q Consensus 65 ~~y~~S~wc~~El~~~~~~~~~~~~~vipi 94 (292)
++...|.|+..|+.++++ .+..|+.|
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEE
Confidence 999999999999998876 33556666
No 15
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.3e-07 Score=81.63 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCCCCCCccccchhHHHHHHhhhh--cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc--eEEEeccccccccccHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRL--ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG--KCFMRNVRDESNKKGVV 251 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~ 251 (292)
+.+.|..+.+|+.+++++...|.. .++.+..+.|+|.+|+|||+.++.+++++...... .+.+. +....++.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHH
Confidence 334556699999999999887762 23334458999999999999999999987766432 34554 45567889
Q ss_pred HHHHHHHHHHhcccc-CCCCCCcHHHHHHHhCC--ceEEEEEeC
Q 040979 252 HVRDEVICEVLEENL-KIGTSIIPPRIQKRLQL--MKVLIVLDD 292 (292)
Q Consensus 252 ~~~~~il~~l~~~~~-~~~~~~~~~~l~~~L~~--kr~LlVLDD 292 (292)
.+..+|+.+++.... +....+....+.+.+.. +.++||||+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDE 131 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDE 131 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 999999999862211 22222256667777755 788999995
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.47 E-value=8.8e-07 Score=77.38 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCCcHHHHHHH--
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSIIPPRIQKR-- 280 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~-- 280 (292)
+...+.|+|++|+|||||++.+++.+...=-..+++. ....+..+++..++..++..............+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3558899999999999999999988653201122332 223456677888887775432211111122333332
Q ss_pred ---hCCceEEEEEeC
Q 040979 281 ---LQLMKVLIVLDD 292 (292)
Q Consensus 281 ---L~~kr~LlVLDD 292 (292)
..+++++||+||
T Consensus 117 ~~~~~~~~~vliiDe 131 (269)
T TIGR03015 117 EQFAAGKRALLVVDE 131 (269)
T ss_pred HHHhCCCCeEEEEEC
Confidence 256889999997
No 17
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.36 E-value=4.7e-07 Score=76.85 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=39.9
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
|+||+.+++.|.+++..+ ....+.|+|+.|+|||+|++.+.+.....-...+++.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 689999999999988743 3568899999999999999999998744322334443
No 18
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.34 E-value=4.3e-07 Score=78.39 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=56.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEecccccccc--ccHHHHHHHHHHHHhccccCCCCC------C-
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMRNVRDESNK--KGVVHVRDEVICEVLEENLKIGTS------I- 272 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~~--~~~~~~~~~il~~l~~~~~~~~~~------~- 272 (292)
....++|.|.+|+|||||++.+++.+.. +|+..+|+. +..+ .++.++++.+...+-....+.+.. .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~----vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVL----LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEE----EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 3567899999999999999999997654 689999987 4443 688888888833332222211110 0
Q ss_pred cHHHHHHH-hCCceEEEEEeC
Q 040979 273 IPPRIQKR-LQLMKVLIVLDD 292 (292)
Q Consensus 273 ~~~~l~~~-L~~kr~LlVLDD 292 (292)
..+..... -.+++++|++|+
T Consensus 91 ~~~~a~~~~~~G~~vll~iDe 111 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDS 111 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEEC
Confidence 11222221 247899999996
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.32 E-value=3.6e-06 Score=82.78 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=71.8
Q ss_pred CCCCCCCCccccchhHHHHHHhhhh---cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC-----CCC--ceEEEeccccc
Q 040979 175 SDLTDLDGFVGLNSRIEDLKSLLRL---ELHDVRVIGIWGMGGIGKTTIASVVFHQISG-----DFQ--GKCFMRNVRDE 244 (292)
Q Consensus 175 ~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-----~f~--~~~~~~~~~~~ 244 (292)
.+.+.|..+.||+.+++.|...|.. +.....++-|+|++|+|||++++.+.+++.. ..+ ..+.+. .
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----C 824 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----G 824 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----C
Confidence 3445678899999999999988863 2333467789999999999999999987642 122 123443 2
Q ss_pred cccccHHHHHHHHHHHHhccccC--CCCCCcHHHHHHHhC---CceEEEEEeC
Q 040979 245 SNKKGVVHVRDEVICEVLEENLK--IGTSIIPPRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 245 ~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~l~~~L~---~kr~LlVLDD 292 (292)
..-..+..+...|..++....+. .........+.+.+. ....+||||+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDE 877 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDE 877 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeeh
Confidence 23345667777777777544331 111112333333332 1245899996
No 20
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=1.5e-06 Score=78.71 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=55.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEeccccccccc--cHHHHHHHHHHHHhccccCCCCC-C------c
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMRNVRDESNKK--GVVHVRDEVICEVLEENLKIGTS-I------I 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~~~--~~~~~~~~il~~l~~~~~~~~~~-~------~ 273 (292)
..-.+|+|++|+|||||++.+++.+.. +|+..+|+. +.++. .+.+++++++..+.....+.+.. . .
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~Vv----LIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVL----LIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEE----EeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 456789999999999999999997654 699999998 44444 77788887764322221111100 0 0
Q ss_pred HHHHHHH-hCCceEEEEEeC
Q 040979 274 PPRIQKR-LQLMKVLIVLDD 292 (292)
Q Consensus 274 ~~~l~~~-L~~kr~LlVLDD 292 (292)
.+.-... -.++.+||++|+
T Consensus 245 ie~Ae~~~e~G~dVlL~iDs 264 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEC
Confidence 1111111 356999999996
No 21
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=5.3e-06 Score=66.51 Aligned_cols=83 Identities=25% Similarity=0.291 Sum_probs=45.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCC--C---ceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDF--Q---GKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSIIPPRIQK 279 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f--~---~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~ 279 (292)
|++.|+|.+|+||||+++.++.++.... . ...++...+..........+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 5789999999999999999999765543 1 1233333333333222223333333333221110 1111222
Q ss_pred H-hCCceEEEEEeC
Q 040979 280 R-LQLMKVLIVLDD 292 (292)
Q Consensus 280 ~-L~~kr~LlVLDD 292 (292)
. ...++++||||+
T Consensus 76 ~~~~~~~~llilDg 89 (166)
T PF05729_consen 76 LLEKNKRVLLILDG 89 (166)
T ss_pred HHHcCCceEEEEec
Confidence 2 256899999995
No 22
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=1.6e-05 Score=61.88 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=37.4
Q ss_pred ccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 185 GLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
|++..+..+...+.. ...+.+.|+|.+|+|||+|++.+++.....-...+++
T Consensus 2 ~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 2 GQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred chHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 566677777766652 2456889999999999999999999864322333444
No 23
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=5.2e-06 Score=75.63 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCC---c----H
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSI---I----P 274 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~----~ 274 (292)
....++|+|.+|+|||||++.+++.+..+ |+..+|+..+. ..+..+.++++.++..+-....+.+... . .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIg--ER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLID--ERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcC--CCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 35678999999999999999999987665 99899988322 1136888998888655443332221110 1 1
Q ss_pred HHHHH-HhCCceEEEEEeC
Q 040979 275 PRIQK-RLQLMKVLIVLDD 292 (292)
Q Consensus 275 ~~l~~-~L~~kr~LlVLDD 292 (292)
+.... .-.+++++|++|+
T Consensus 245 e~Ae~~~~~GkdVVLlIDE 263 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDS 263 (415)
T ss_pred HHHHHHHHcCCCeEEEEEC
Confidence 11111 1357899999995
No 24
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.18 E-value=2.8e-06 Score=67.69 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=57.5
Q ss_pred cEEEccccccCc-cchHHHHHHHHHhC-CCeEEeeCCCCCC--CCcchHHHHHHHhhcceEEEEEccCC
Q 040979 3 EVFLNFRGKDTR-NGFTSHLAAALHRK-QIQFFIDDEELRK--GDEISPAFSNAIQNSDISIVIFSKDY 67 (292)
Q Consensus 3 dvFiSy~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 67 (292)
-|||||+++... ..+|..|+..|++. |+.|.+|.++... +..+..-+.+.++++..+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 489999986553 47899999999999 9999999999854 77899999999999999999999766
No 25
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.12 E-value=1.1e-05 Score=67.78 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=39.0
Q ss_pred CCCCCccccchhHHHHHHhhhh---cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL---ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
....+|+|.+.-+..+.-++.. .++....+.+||++|+||||||..++++...+|.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 4567899999887776655542 2345788999999999999999999999877763
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.09 E-value=5.2e-06 Score=74.89 Aligned_cols=54 Identities=26% Similarity=0.485 Sum_probs=43.6
Q ss_pred CCCCCccccchhHHHHHHhhhh---cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL---ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....+|+|++..++.+..++.. .......+.++|++|+||||||+.+++.+...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 4556799999999998877753 23446678899999999999999999987544
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.98 E-value=8.9e-06 Score=72.50 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=40.9
Q ss_pred CCccccchhHHHHHHhhhhc---CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE---LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+|+|++..++.+..++... ......+.++|++|+|||+||+.+++++...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45999999999988877631 2335568899999999999999999987544
No 28
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=9.6e-05 Score=66.25 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=61.5
Q ss_pred CCCccccchhHHHHHHhhhhcCCC-eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHD-VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVI 258 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~-~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il 258 (292)
.+.+.+|+.++..+..++...+.. +..+-|+|-.|+|||.+.+.+++.... ..+|++ +-..++...+...|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 456889999999999988755443 556699999999999999999997632 348887 555688999999999
Q ss_pred HHHh
Q 040979 259 CEVL 262 (292)
Q Consensus 259 ~~l~ 262 (292)
.+..
T Consensus 78 ~~~~ 81 (438)
T KOG2543|consen 78 NKSQ 81 (438)
T ss_pred HHhc
Confidence 9885
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.82 E-value=6.4e-05 Score=67.85 Aligned_cols=53 Identities=26% Similarity=0.499 Sum_probs=37.3
Q ss_pred CCCCccccchhH---HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 179 DLDGFVGLNSRI---EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 179 ~~~~~~gr~~~~---~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
...+++|.+--+ ..|..++. ..+...+.+||++|+||||||+.++......|.
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence 344566655332 12334443 456788899999999999999999998777664
No 30
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.82 E-value=5.1e-05 Score=70.68 Aligned_cols=52 Identities=27% Similarity=0.506 Sum_probs=39.0
Q ss_pred CCCCccccchhHHH---HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 179 DLDGFVGLNSRIED---LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 179 ~~~~~~gr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+++|.+..+.. +..++.. .....+.++|++|+||||||+.+++.....|
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34568888766555 6666653 3455788899999999999999999865544
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=97.72 E-value=0.00014 Score=69.14 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=42.1
Q ss_pred CCCCCccccchhHHHHHHhhhh--cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL--ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+..++.+..|+.. .+...+.+.|+|++|+||||+|+.+++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3445699999999999998863 22336889999999999999999999986
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.72 E-value=0.00017 Score=73.56 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=50.6
Q ss_pred CCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEecccccc-ccccHHHHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDES-NKKGVVHVR 254 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~ 254 (292)
+|..+..++-|..-.+ .|. .....+++.|+|++|.||||++..+.++. ..++|+. .. ...++..+.
T Consensus 9 ~p~~~~~~~~R~rl~~----~l~-~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLA----KLS-GANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFA 75 (903)
T ss_pred CCCCccccCcchHHHH----HHh-cccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHH
Confidence 3444566777764433 343 23457899999999999999999988642 3688996 43 234556666
Q ss_pred HHHHHHHh
Q 040979 255 DEVICEVL 262 (292)
Q Consensus 255 ~~il~~l~ 262 (292)
..++..+.
T Consensus 76 ~~l~~~l~ 83 (903)
T PRK04841 76 SYLIAALQ 83 (903)
T ss_pred HHHHHHHH
Confidence 77777774
No 33
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.68 E-value=0.00014 Score=61.87 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|.++|..+-....++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566666544456789999999999999999999987655556778876
No 34
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00011 Score=64.51 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=47.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh----CCCCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS----GDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSIIPPRIQK 279 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~ 279 (292)
-|+|.++|++|+|||+|++++++++. +.|..+..+. -+..++..++++.-+.... . ....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE--------inshsLFSKWFsESgKlV~----k-mF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE--------INSHSLFSKWFSESGKLVA----K-MFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE--------EehhHHHHHHHhhhhhHHH----H-HHHHHHH
Confidence 48899999999999999999999643 4566666664 3556666666655432111 0 4455666
Q ss_pred HhCCceEE
Q 040979 280 RLQLMKVL 287 (292)
Q Consensus 280 ~L~~kr~L 287 (292)
.+.++.+|
T Consensus 244 Lv~d~~~l 251 (423)
T KOG0744|consen 244 LVEDRGNL 251 (423)
T ss_pred HHhCCCcE
Confidence 66665543
No 35
>PRK07261 topology modulation protein; Provisional
Probab=97.66 E-value=0.00024 Score=57.90 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=25.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC---CCCceEEE
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG---DFQGKCFM 238 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~---~f~~~~~~ 238 (292)
.|.|+|++|+||||||+.+.....- +.+...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 4789999999999999999886432 24445554
No 36
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.65 E-value=0.00037 Score=59.13 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
....+-|+|..|+|||.|.+++++++....
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 356689999999999999999999876543
No 37
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.65 E-value=0.00019 Score=66.57 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC--CCCceEEEeccccccccccHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG--DFQGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .|..+.|+. +.+..+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHh
Confidence 4466667777777766652 356888999999999999999997654 456667776 55555555543
No 38
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.64 E-value=0.00014 Score=55.87 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=26.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
..+.|+|.+|+||||+++.++..+.......+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999765544233444
No 39
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.0002 Score=72.28 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++||+.+++.+.+.|... ..+-+.++|.+|+|||++|+.++.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999988733 234567999999999999999999764
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00026 Score=70.68 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++||+.+++.+...|... ...-+.++|.+|+|||++|+.+++++..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346999999999988887633 3445679999999999999999998643
No 41
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=0.0002 Score=58.08 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC---CCCceEEE
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG---DFQGKCFM 238 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~---~f~~~~~~ 238 (292)
.|.|+|++|+||||||+.+++.+.- +|+...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5889999999999999999997543 36666654
No 42
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00032 Score=61.40 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
..+.++|.+|+|||.||.++++.+..+-..++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4588999999999999999999876553334444
No 43
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.59 E-value=0.00035 Score=60.93 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=54.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c-----
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I----- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~----- 273 (292)
..-++|.|-+|+|||||++.++++++.+|+..+++.-+.+ ......++.+++.+.-..... ...+.. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4568999999999999999999998888877776653322 234556666666543111111 111111 1
Q ss_pred ---HHHHHHHh---CCceEEEEEeC
Q 040979 274 ---PPRIQKRL---QLMKVLIVLDD 292 (292)
Q Consensus 274 ---~~~l~~~L---~~kr~LlVLDD 292 (292)
.-.+.+++ .++.+||++||
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 11233555 37899999997
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.59 E-value=0.00039 Score=70.41 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++||+.+++.+...|... ....+.++|.+|+|||+||+.++.++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 356999999999999888632 3345669999999999999999998643
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.58 E-value=0.00015 Score=64.67 Aligned_cols=50 Identities=30% Similarity=0.561 Sum_probs=34.5
Q ss_pred CCCccccchhHHH---HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIED---LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.||.+.-+.+ |.+++. .+....+.+||++|+||||||+.+...-+.+
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~ 189 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH 189 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC
Confidence 3456666544332 233333 4567889999999999999999999865544
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.00034 Score=59.81 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.+.++|.+|+|||+|++++++....+...+.++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 456899999999999999999998765555556665
No 47
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.55 E-value=0.00019 Score=61.36 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=30.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
-.+.|.|..|+|||||...+.......|.++.+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35789999999999999999998888897766665
No 48
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.55 E-value=0.00029 Score=64.55 Aligned_cols=53 Identities=25% Similarity=0.504 Sum_probs=41.0
Q ss_pred CCCccccchhHHHHHHhhhh--c---------CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL--E---------LHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~--~---------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+.|++.+++.+.+.+.. . -...+-+.++|++|+|||+||++++++....|
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 35688999999998876642 1 12356689999999999999999999876554
No 49
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00066 Score=58.64 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+.++|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 467899999999999999999998766544455554
No 50
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00021 Score=61.11 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC------CCceEEEe
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD------FQGKCFMR 239 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~~~ 239 (292)
.+.++|..+-....++.|+|.+|+|||+||..++-..... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 4555565444567899999999999999999997653222 25678876
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=97.53 E-value=0.0004 Score=62.39 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=38.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+..++.+..++..+ ....+-++|++|+||||+|..+++.+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456888887777777776532 334477999999999999999999863
No 52
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.52 E-value=0.00054 Score=64.57 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
.+.+.|+|.+|+|||+|++++++++..+++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~ 177 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP 177 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999998876653
No 53
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.52 E-value=0.00099 Score=57.39 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=27.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...+.++|.+|+|||+||.++++.+...-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999999999999999999876544444444
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.52 E-value=0.00034 Score=64.64 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=39.9
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.|++.+++.+.+.+.. +-...+-+.++|++|+|||++|++++++....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 4577999999998876632 11345678999999999999999999986544
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.52 E-value=0.00023 Score=70.35 Aligned_cols=53 Identities=26% Similarity=0.507 Sum_probs=38.9
Q ss_pred CCCCCccccchhHH---HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 178 TDLDGFVGLNSRIE---DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 178 ~~~~~~~gr~~~~~---~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
....+++|.+..+. .+..++. ......+.++|++|+||||||+.+++.....|
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 34456889887664 3445554 33455678999999999999999999876555
No 56
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.00089 Score=62.83 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+.|+|.+|+|||+|++++++.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~ 158 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC
Confidence 45699999999999999999999876654
No 57
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=0.0001 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00048 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEcCCcccHHHHHHHHHHHHh
Q 040979 207 IGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
|.|+|.+|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999874
No 59
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.48 E-value=0.00063 Score=68.80 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++||+.++..+...|... ....+.++|.+|+||||||+.+++++..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 3457999999999988877632 3345679999999999999999998743
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.47 E-value=0.00042 Score=65.69 Aligned_cols=51 Identities=29% Similarity=0.485 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.|.+..++.+.+.+.. +-...+-+.++|++|+|||++|+++++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4577888888888776531 11235668999999999999999999987554
No 61
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0007 Score=58.78 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...-+.++|.+|+|||.||.++.+++...--.+.|++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5667899999999999999999998774323344443
No 62
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.45 E-value=0.00034 Score=58.71 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=34.6
Q ss_pred hhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 196 LLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 196 ~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+|..+-...+++.|+|.+|+|||++|..++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34433355789999999999999999999887655556778886
No 63
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.00054 Score=56.21 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=25.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..-+.++|.+|+|||.||.++.++...+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456999999999999999999997554333345554
No 64
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.44 E-value=0.00078 Score=62.60 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+.|+|..|+|||+|++++++++..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999876654
No 65
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.44 E-value=0.00069 Score=57.80 Aligned_cols=56 Identities=21% Similarity=0.441 Sum_probs=42.5
Q ss_pred CCCCCCCccccchhHHHHHHhhh--hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLR--LELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+.....++|.+.+++.+.+=.. ........+-+||..|+|||+|++++.++....
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34455679999999988765322 234457788899999999999999999986553
No 66
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0002 Score=61.90 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=43.8
Q ss_pred CCCCCccccchhHHHHHHhhh---hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLR---LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
....+|+|.+.-++.+.-.+. ...+..-.+.++|++|.||||||..+++++..++
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 345679999988887776665 2345578899999999999999999999876654
No 67
>PF13173 AAA_14: AAA domain
Probab=97.40 E-value=0.00062 Score=52.58 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=26.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+++.|.|+.|+|||||++.++++.. .-+..+++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 36789999999999999999998765 223344443
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.38 E-value=0.00093 Score=67.81 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++||+.+++.+...|... ....+.++|.+|+|||++|..+++++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346999999999999888642 3345568999999999999999998644
No 69
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.38 E-value=0.00065 Score=57.43 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...|.++|..+=...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666544456789999999999999999999987655444566664
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.37 E-value=0.0014 Score=57.70 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=67.5
Q ss_pred Cccccchh---HHHHHHhhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC------ceEEEeccccccccccHH
Q 040979 182 GFVGLNSR---IEDLKSLLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ------GKCFMRNVRDESNKKGVV 251 (292)
Q Consensus 182 ~~~gr~~~---~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~~ 251 (292)
.++|-... ++.+.+++.. .......+.|+|-+|.|||++++.+.......++ .++.+. ....++..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDER 110 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChH
Confidence 45554333 3445555552 3344678999999999999999999986443332 222332 56678999
Q ss_pred HHHHHHHHHHhccccCCCCCC-cHHHHHHHhCC-ceEEEEEeC
Q 040979 252 HVRDEVICEVLEENLKIGTSI-IPPRIQKRLQL-MKVLIVLDD 292 (292)
Q Consensus 252 ~~~~~il~~l~~~~~~~~~~~-~~~~l~~~L~~-kr~LlVLDD 292 (292)
.+-..||.+++.+........ +.......|+. +-=+||+|.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE 153 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDE 153 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeec
Confidence 999999999987655333333 34444445544 223667773
No 71
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0018 Score=59.79 Aligned_cols=111 Identities=16% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCCccccchhHHHHHHhhh--hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc--eEEEeccccccccccHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLR--LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG--KCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~--~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 253 (292)
..+..+.||+.++..+.+++. ...+....+-|.|.+|+|||.+...++.+....... ++.+.+ ..-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc----~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC----TSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee----ccccchHHH
Confidence 456789999999999999876 344557889999999999999999999876554332 233432 212355566
Q ss_pred HHHHHHHHhccccCC-CCCCcHHHHHHHhCC--ceEEEEEeC
Q 040979 254 RDEVICEVLEENLKI-GTSIIPPRIQKRLQL--MKVLIVLDD 292 (292)
Q Consensus 254 ~~~il~~l~~~~~~~-~~~~~~~~l~~~L~~--kr~LlVLDD 292 (292)
...|++.+......- ...+..+.+.++..+ ..+|||||.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDE 264 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDE 264 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEech
Confidence 667766663322211 112245566666655 368999984
No 72
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.00093 Score=60.68 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=53.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCC-Cce-EEEeccccccccccHHHHHHHHHHHHhccccCCCCCC---c---HHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDF-QGK-CFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSI---I---PPR 276 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~-~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~---~~~ 276 (292)
.-+.|+|.+|+|||||++.+++.+..+. +.. +|+. + ......+.++.+.++..+.....+..... . ...
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l-I--gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL-I--DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE-e--cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999876654 332 3433 1 13356778888888776654322111111 0 111
Q ss_pred HHHHh--CCceEEEEEeC
Q 040979 277 IQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 277 l~~~L--~~kr~LlVLDD 292 (292)
..+++ .+++++||+|+
T Consensus 211 ~Ae~f~~~GkdVVLvlDs 228 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDS 228 (380)
T ss_pred HHHHHHHcCCCEEEEEeC
Confidence 22222 46899999996
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0016 Score=61.50 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-.+.+...+..+ .-...+.++|++|+||||+|+.+++.+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899887767677666532 224568899999999999999999865
No 74
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.0013 Score=61.85 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+.|+|..|+|||+|++++++.+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4568999999999999999999976543
No 75
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.32 E-value=0.0021 Score=54.54 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC------CceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF------QGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f------~~~~~~~ 239 (292)
..+.++|..+-....++.|+|.+|+|||+||..++......- ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 345566654445578999999999999999999987654444 4567776
No 76
>PRK08727 hypothetical protein; Validated
Probab=97.32 E-value=0.0015 Score=55.95 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+.++|.+|+|||+|++++++........+.++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 456999999999999999999998665544555554
No 77
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.30 E-value=0.0025 Score=56.83 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...-+-++|..|+|||.||.++++.+...-..+.++.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3567899999999999999999998765433345554
No 78
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0023 Score=58.63 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=40.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 34567899998888888877633 2345678999999999999999998753
No 79
>PRK07667 uridine kinase; Provisional
Probab=97.29 E-value=0.00075 Score=56.07 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+.+.+.+..-.....+|+|.|.+|.||||+|+.+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444555544455689999999999999999999997654
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0018 Score=62.08 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=39.7
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567889998888888877632 2345678999999999999999998653
No 81
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.0011 Score=57.91 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=27.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+.++|.+|+|||.||.++.+........+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 345899999999999999999997655433445553
No 82
>PRK06696 uridine kinase; Validated
Probab=97.27 E-value=0.00048 Score=58.59 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=34.8
Q ss_pred cchhHHHHHHhhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 186 LNSRIEDLKSLLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 186 r~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
|+..+++|.+.+.. ......+|+|.|.+|+||||||+.+.+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45556666665542 3456889999999999999999999998754
No 83
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00037 Score=55.31 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC-CCce
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD-FQGK 235 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~ 235 (292)
--|.|.||+|+||||+++.+.+.++.+ |...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 458999999999999999999987665 6543
No 84
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.0054 Score=52.01 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=46.1
Q ss_pred CCCCCCCccccchhHHHHHHhhh--hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceE
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLR--LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKC 236 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~ 236 (292)
.+.+...++|.+.+.+.+.+=.. ..+-...-+.+||.-|+|||+|.+++.+.+....-.-+
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 33455678999988887754322 23455788999999999999999999999887766533
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.25 E-value=0.0016 Score=58.19 Aligned_cols=50 Identities=32% Similarity=0.426 Sum_probs=39.8
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++|++..++.+..++..+ ....+.++|.+|+||||+|+.+++++..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456889998888888887632 3345799999999999999999998643
No 86
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.24 E-value=0.0017 Score=63.93 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccc-cccHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESN-KKGVVHVRDE 256 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (292)
..+.+.+-|..- .+.|. ...+.|.+.|..++|.|||||+-.+.. ....=..+.|+. .++ ..++..+...
T Consensus 16 ~~~~~~v~R~rL----~~~L~-~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~y 85 (894)
T COG2909 16 VRPDNYVVRPRL----LDRLR-RANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSY 85 (894)
T ss_pred CCcccccccHHH----HHHHh-cCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHH
Confidence 334556666643 33343 234689999999999999999999988 344456788987 433 4678888999
Q ss_pred HHHHHhcccc
Q 040979 257 VICEVLEENL 266 (292)
Q Consensus 257 il~~l~~~~~ 266 (292)
++..+....+
T Consensus 86 Li~al~~~~p 95 (894)
T COG2909 86 LIAALQQATP 95 (894)
T ss_pred HHHHHHHhCc
Confidence 9998875444
No 87
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.22 E-value=0.00043 Score=62.53 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=41.5
Q ss_pred CCccccchhHHHHHHhhhhc----CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE----LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~----~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.++.++++.+.+... +...+++.++|++|+||||||+.+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999998887632 334688999999999999999999997644
No 88
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.22 E-value=0.0013 Score=58.92 Aligned_cols=49 Identities=24% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|..+|. .+=+..+++-|+|++|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34556665 33456789999999999999999998876655556677775
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0019 Score=63.44 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+.+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999988888888887432 24556799999999999999998865
No 90
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.21 E-value=0.0013 Score=54.83 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=26.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
++++.++|+.|+||||.+..++.+...+=..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999887655523344443
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0023 Score=60.93 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.|..++..+ .-...+.++|++|+||||+|+.+++.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456889888778787777643 2245679999999999999999998753
No 92
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.19 E-value=0.0015 Score=58.44 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=36.5
Q ss_pred HHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|..+|. .+=+..+++-|+|.+|+||||||..+.......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34556665 34456789999999999999999998876655545667775
No 93
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=97.17 E-value=0.0015 Score=50.14 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=53.2
Q ss_pred cEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccC
Q 040979 3 EVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKD 66 (292)
Q Consensus 3 dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 66 (292)
-|||.|+ .|. .+++.+...|+..|+.+.+-......|..+.+.+.+.+.++..+|++++|+
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899997 555 789999999998899887655567899999999999999999999999984
No 94
>PRK09354 recA recombinase A; Provisional
Probab=97.17 E-value=0.0018 Score=58.54 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|..+|. .+=...+++-|+|++|+||||||..++......=..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 35666665 34456789999999999999999998876655556677775
No 95
>PRK06921 hypothetical protein; Provisional
Probab=97.17 E-value=0.0019 Score=56.54 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
....+.++|..|+|||+||.++++.+... -..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999987654 34455554
No 96
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0023 Score=63.98 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=40.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.|.+++..+ .-...+.++|..|+||||+|+.+++.+.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34567999998888888877632 2245568999999999999999999754
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.003 Score=60.31 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=40.1
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34567999998888898888633 224567899999999999999999864
No 98
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.001 Score=57.72 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+.++|++|+|||+||.++..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 456899999999999999999987543
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00078 Score=54.95 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3568999999999999999999999877777766663
No 100
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.08 E-value=0.00071 Score=60.98 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=39.7
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456889998888888877632 3345789999999999999999997643
No 101
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0024 Score=63.65 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++||+.+++.+...|... ....+.++|.+|+|||++|+.+++++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45999999999999888742 23445689999999999999999875
No 102
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.08 E-value=0.0005 Score=52.51 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.2
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.|.|.+|+||||+|+.+.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.07 E-value=0.0024 Score=54.33 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=32.4
Q ss_pred CCCCCcc-ccchhH-HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFV-GLNSRI-EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~-gr~~~~-~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|+ |..... ..+.++.. +....+.+.++|..|+|||+||+.++++.
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344555 443332 33333333 23345788999999999999999999865
No 104
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0036 Score=60.79 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=40.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-.+.|..++..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567999998888888888733 224678899999999999999999865
No 105
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.06 E-value=0.0023 Score=59.21 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.++.|.+..++.+.+.+.. +-...+-+.++|++|+|||+||+++++.....|
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4577888888888776531 113467789999999999999999999765443
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0043 Score=59.54 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.+..++..+ .-...+.++|..|+||||+|+.++..+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899998888888877632 224567899999999999999999865
No 107
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0052 Score=55.36 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+.++|.+|+|||+||.++++.+...-..++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367999999999999999999998655433445554
No 108
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.00044 Score=67.26 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCCCCCCccccchhHHHHHHhhhhc---CCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLE---LHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|....+++|.+..++.+..++... ....+++.++|++|+||||+++.++..+
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345567999998889888888632 2345789999999999999999999864
No 109
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.02 E-value=0.00035 Score=63.39 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=58.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCCcHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSIIPPRIQKRLQ 282 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~L~ 282 (292)
..+.+.++|.|||||||++-.+.+ ++..|...+|+.+...++++.- +.-.+...++.... +.......+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~---v~~~~ag~~gl~~~--~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPAL---VFPTLAGALGLHVQ--PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhH---hHHHHHhhcccccc--cchHHHHHHHHHHh
Confidence 468899999999999999999999 8888998888886666654432 22233333332211 11113456777888
Q ss_pred CceEEEEEeC
Q 040979 283 LMKVLIVLDD 292 (292)
Q Consensus 283 ~kr~LlVLDD 292 (292)
++|.++|+||
T Consensus 87 ~rr~llvldn 96 (414)
T COG3903 87 DRRALLVLDN 96 (414)
T ss_pred hhhHHHHhcC
Confidence 8999999997
No 110
>PRK09183 transposase/IS protein; Provisional
Probab=97.01 E-value=0.0038 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+.|+|.+|+|||+||.+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999988643
No 111
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.01 E-value=0.0055 Score=48.50 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=25.9
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.|+|.+|+||||++..++......-..++++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999987655434455554
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0037 Score=58.66 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...+.|+|..|+|||+|++++++.+...-..+.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi 175 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYV 175 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Confidence 46789999999999999999999875443333444
No 113
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0045 Score=60.05 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=39.8
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999988888888886432 24567899999999999999999865
No 114
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.98 E-value=0.00081 Score=55.86 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.97 E-value=0.0019 Score=54.67 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
..++.+..++. ....+.+.++|.+|+|||+||+.++++........+++
T Consensus 24 ~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 24 ELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred HHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 34555665543 34467899999999999999999998765433333444
No 116
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0012 Score=63.92 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCccccchhHHHHHHhhhh----cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL----ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
.+..|.+.-.+.+.+.|.. ..-...+++++|++|+|||+|++.+++-+...|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 5788999889998888762 2334689999999999999999999998877763
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0065 Score=57.52 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=38.6
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.++..+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 34567899988888887776533 224578899999999999999998753
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.93 E-value=0.0016 Score=58.22 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=41.3
Q ss_pred CCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 177 LTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 177 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
|....+++|.+...+.+..++.. +.-...+.++|.+|+||||+|+.++++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 34456789999888888888763 23356777899999999999999998763
No 119
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.92 E-value=0.0017 Score=51.80 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=29.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..+|-++|++|.||||||+++.+++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 357899999999999999999999877666666663
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.91 E-value=0.0013 Score=57.26 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=33.5
Q ss_pred CccccchhHHHHHHhhh---h----------cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLR---L----------ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~---~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++|.+..++.+.++.. . ..+....+.++|++|+||||+|+.+++.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47887777766654321 1 01235678899999999999999998865
No 121
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0014 Score=54.94 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=26.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.+|||-|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999998765
No 122
>CHL00176 ftsH cell division protein; Validated
Probab=96.89 E-value=0.0034 Score=61.47 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++.|.+..++.+.+++.. +....+-+.++|++|+|||+||++++.+...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35678888777776665431 1122456899999999999999999987643
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.89 E-value=0.0056 Score=59.87 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=38.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|++..+..+.+.+. ......+.|+|++|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 445578999988887766554 2334579999999999999999998854
No 124
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.88 E-value=0.0022 Score=57.38 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH--HhC----CCCceEEEeccccccccccHHHHHHHHHHHHh
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ--ISG----DFQGKCFMRNVRDESNKKGVVHVRDEVICEVL 262 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~--~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 262 (292)
..|.++|..+-...+++-|+|.+|+|||+|+..++-. +.. .=..++|+. ....+.+..+.+ +++.++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHHH-HHHHcC
Confidence 4566667644456789999999999999999887643 211 113567776 555566766543 445543
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0068 Score=58.61 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=24.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+.|+|..|+|||.|++++++.+...+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~ 342 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLY 342 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 35689999999999999999999876543
No 126
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.85 E-value=0.003 Score=60.31 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=36.7
Q ss_pred CCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++.|.+..++.+.+++.. +....+-+.++|++|+|||+||++++......
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35677887776666554431 12334568899999999999999999875433
No 127
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.85 E-value=0.0012 Score=55.36 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|+|.|.+|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 128
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.84 E-value=0.0023 Score=57.92 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=44.3
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh--C---C-CCceEEEeccccccccccHHHHHHHHHHHHh
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS--G---D-FQGKCFMRNVRDESNKKGVVHVRDEVICEVL 262 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~--~---~-f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 262 (292)
..|.++|..+=...++.-|+|.+|+|||+|+..++-... . . -..++|+. ....+.+..+.+ +++.++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH-HHHHcC
Confidence 456666664445678899999999999999998864321 1 1 23567776 555567776544 444443
No 129
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.84 E-value=0.005 Score=54.41 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=32.8
Q ss_pred CccccchhHHHHHHhhh---h-------cC---CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 182 GFVGLNSRIEDLKSLLR---L-------EL---HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~---~-------~~---~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++|.+..++.+.++.. . +- .....+.++|.+|+|||++|+.++..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47787776666655322 0 10 1233688999999999999998888654
No 130
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.009 Score=55.84 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++.++|.+|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877654
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.82 E-value=0.0065 Score=61.79 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhhhc-----C--CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-----L--HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++|.+..++.+...+... . .....+.+.|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46889998888888777531 1 124568899999999999999999976443
No 132
>PRK08233 hypothetical protein; Provisional
Probab=96.81 E-value=0.0011 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998753
No 133
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0082 Score=58.79 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=40.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|..++..+ .-...+.++|..|+||||+|+.++..+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34567999998888888888742 235678999999999999999998864
No 134
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.011 Score=54.10 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+..++.+...+..+ .-...+-++|++|+||||+|+.+.+.+.
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566899998888888877632 2356788999999999999999988764
No 135
>PRK06762 hypothetical protein; Provisional
Probab=96.80 E-value=0.0013 Score=53.00 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|.|+|++|+||||+|+.+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999876
No 136
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.80 E-value=0.0016 Score=56.57 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh--CC---CC-ceEEEeccccccccccHHHHHHHHHHH
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS--GD---FQ-GKCFMRNVRDESNKKGVVHVRDEVICE 260 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~--~~---f~-~~~~~~~~~~~~~~~~~~~~~~~il~~ 260 (292)
..|.++|..+-....+.-|+|.+|+|||.||..++-... .. .+ .++|+. ....+....+. +|++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERLQ-QIAER 95 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHHH-HHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHHH-HHhhc
Confidence 456666753334567899999999999999998876432 21 22 366775 44456666654 45544
No 137
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0079 Score=58.76 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999988888888776332 24557899999999999999999864
No 138
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0054 Score=53.71 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHH
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 253 (292)
.+.++|..+-+..+++-|+|+.|.||||+|.+++-..+..-..++|+. ..+.+++..+
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~l~p~r~ 105 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHALDPERA 105 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCCCCHHHH
Confidence 455556544456899999999999999999998876665556889997 5555666553
No 139
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0085 Score=58.33 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=39.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|.+++..+ .-...+.++|..|+||||+|+.+++.+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899888778888877633 234667899999999999999998754
No 140
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.78 E-value=0.0065 Score=51.94 Aligned_cols=50 Identities=18% Similarity=0.077 Sum_probs=36.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+..+.++|..+-...+++.|.|.+|+|||+||.++......+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34566666544456789999999999999999998765333334566665
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.0029 Score=63.35 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=39.6
Q ss_pred CCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++.|.+..++.+.+++.. +-...+.+.++|.+|+|||+||+.+++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34577999888888777642 11335678899999999999999999986543
No 142
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.76 E-value=0.003 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=20.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999997665
No 143
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.76 E-value=0.006 Score=55.29 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..++.++|||++|+|||.+|++++.++...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 5588999999999999999999999976553
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.74 E-value=0.011 Score=60.19 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHhhhhc-------CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-------LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.+..+..+...+... +.....+.++|+.|+|||+||+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889988888887766521 112357889999999999999999987643
No 145
>PRK10536 hypothetical protein; Provisional
Probab=96.74 E-value=0.013 Score=50.70 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH-H-hCCCCceEEE
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ-I-SGDFQGKCFM 238 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~-~-~~~f~~~~~~ 238 (292)
..+.++......+..++.. ...+.+.|.+|+|||+||.++..+ + ...|...+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 3456676666666666642 348999999999999999998884 4 3445544443
No 146
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.74 E-value=0.0015 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.++|++|+||||+|+.+++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 147
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.73 E-value=0.0066 Score=49.26 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999876554
No 148
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.73 E-value=0.0015 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998764
No 149
>PRK03839 putative kinase; Provisional
Probab=96.73 E-value=0.0015 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0029 Score=60.22 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=41.5
Q ss_pred CCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+=|.+..+.++.+++.. +-...+=+.++|++|+|||.||++++.++.-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 45566888888888776642 223467789999999999999999999887665
No 151
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.72 E-value=0.0066 Score=55.65 Aligned_cols=50 Identities=30% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.++..+|..+-....++.|.|.+|+|||||+..++......-..++++.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44566666544445789999999999999999999987665444555654
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.72 E-value=0.0075 Score=61.10 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCccccchhHHHHHHhhhhc-----C--CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-----L--HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.+..++.+...+... . .....+.++|+.|+|||+||+.+++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 56889888888887766421 1 12345678999999999999999997643
No 153
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.71 E-value=0.0057 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+++.++|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887643
No 154
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.71 E-value=0.0073 Score=54.02 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC------CCceEEEeccccccccccHHHHH
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD------FQGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
.+..+|..+-....++-|+|.+|+|||+|+..++....-. =..++|+. ....+....+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~----te~~f~~~rl~ 147 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID----TENTFRPERIM 147 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE----CCCCCCHHHHH
Confidence 4555565343557899999999999999999998764321 12567776 44445555543
No 155
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.71 E-value=0.0019 Score=54.21 Aligned_cols=28 Identities=39% Similarity=0.579 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+|+|.|++|+|||||++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999998654
No 156
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.01 Score=54.19 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCC--CceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDF--QGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f--~~~~~~~ 239 (292)
...++.++|+.|+||||++..++.+....+ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998754333 3344443
No 157
>PTZ00301 uridine kinase; Provisional
Probab=96.71 E-value=0.0017 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=24.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+|+|.|.+|.||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0069 Score=59.86 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred CCccccchhHHHHHHhhhh-------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRL-------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 253 (292)
..++|.+..+..+.+.+.. .+.+.......|+.|+|||-||+.++..+.+.=+.-+-+ |+++....++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHs---- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHS---- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHH----
Confidence 5688999888888776652 123356777889999999999999999864322332222 3333322222
Q ss_pred HHHHHHHHhccccCCCCCCcHHHHHHHhCCceE-EEEEe
Q 040979 254 RDEVICEVLEENLKIGTSIIPPRIQKRLQLMKV-LIVLD 291 (292)
Q Consensus 254 ~~~il~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLD 291 (292)
.+.|.+..++.-+.+--..|.+..+.++| +|.||
T Consensus 566 ----VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlD 600 (786)
T COG0542 566 ----VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLD 600 (786)
T ss_pred ----HHHHhCCCCCCceeccccchhHhhhcCCCeEEEec
Confidence 24445555544333323457777888877 66666
No 159
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.70 E-value=0.0057 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+|.++|++|+||||+|+.+.+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 160
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0075 Score=55.29 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|+++|.+|+||||++..++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999886543
No 161
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.68 E-value=0.0017 Score=44.36 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++.|.|..|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 162
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0044 Score=51.40 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+.|.+.|.+|+||||+|++++..++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999976554
No 163
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.67 E-value=0.0068 Score=54.27 Aligned_cols=57 Identities=26% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCCCCccccchhHHH---HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc
Q 040979 178 TDLDGFVGLNSRIED---LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG 234 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 234 (292)
.....+||.....+. +.+++..+.-..+.|.+.|++|+|||+||-.+++.+...-+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 345679998766654 456666665668899999999999999999999998766443
No 164
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.0091 Score=59.73 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhhhc-----C--CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-----L--HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++|.+..++.+...+... + .....+.++|++|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46788888888877766521 1 1244678999999999999999999773
No 165
>PRK04040 adenylate kinase; Provisional
Probab=96.67 E-value=0.0021 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=23.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|.|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 166
>PRK00625 shikimate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.++||+|+||||+++.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.63 E-value=0.0027 Score=59.36 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.++.|.+.+++.+.+.+.. +-...+-+.++|++|+|||+||++++++....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4567888888888876642 112356688999999999999999999876554
No 168
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.63 E-value=0.0051 Score=55.58 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCCccccchhHHH---HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccc-cccccHHHHH
Q 040979 179 DLDGFVGLNSRIED---LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDE-SNKKGVVHVR 254 (292)
Q Consensus 179 ~~~~~~gr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~ 254 (292)
....+||.....+. +.+++..+.-..+.+.+.|++|+|||+||..+++.+....+.+.... +++ |....-.+++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg--SEiyS~e~kKTE~L 99 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG--SEIYSSEVKKTEAL 99 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG--GGG-BTTC-HHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc--ceeeecccCchHHH
Confidence 35689998877665 34555544445789999999999999999999999987766544431 222 2233444444
Q ss_pred HHHHHH
Q 040979 255 DEVICE 260 (292)
Q Consensus 255 ~~il~~ 260 (292)
.+.+++
T Consensus 100 ~qa~Rr 105 (398)
T PF06068_consen 100 TQAFRR 105 (398)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0019 Score=57.68 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+=|.+.+++++.+.+.. +-..++=|.+||++|+|||-||++++++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 344788889888887652 12346778999999999999999999863
No 170
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0026 Score=61.49 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=44.0
Q ss_pred CCccccchhHHHHHHhhh----hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 181 DGFVGLNSRIEDLKSLLR----LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
.+..|++.-++.+.+++. .++.+..+++.+|++|+|||++|+.++..+-..|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 567888888888888775 24566899999999999999999999998776653
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.0074 Score=61.18 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHhhhh-----c--CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----E--LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++|.+..++.+.+.+.. . +....++.++|++|+|||.||+.+++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4688998888888776642 1 1224578899999999999999999886443
No 172
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.019 Score=53.11 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHhhhhcCC--------CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELH--------DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~--------~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++|.+.-++.+..++..+.. -...+.++|+.|+|||++|+.++..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578888888888888874321 25678899999999999999998854
No 173
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.016 Score=56.09 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.++..+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899988888888887632 2244578999999999999999998653
No 174
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.56 E-value=0.006 Score=54.70 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+..+|..+-....++.|+|.+|+|||+|+..++..
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 34566666655466889999999999999999988763
No 175
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.56 E-value=0.0033 Score=60.06 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCccccchhHHHHHHhhh----hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLR----LELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++.|.+..++.+.+.|. ......+++.++|++|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 368999999999888773 234457899999999999999999999965443
No 176
>PRK13947 shikimate kinase; Provisional
Probab=96.56 E-value=0.0021 Score=52.00 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.|.|+||+|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 177
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.55 E-value=0.0079 Score=52.33 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 193 LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 193 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.+++..+=...+++.|+|.+|+|||+++.++..+.....+.++|++
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44445433456789999999999999999999998777788899987
No 178
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0031 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999984
No 179
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.54 E-value=0.0082 Score=51.50 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.+.|+|+.|+|||+|++.+++.....
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34688999999999999999999875543
No 180
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.52 E-value=0.0017 Score=49.87 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=20.7
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCceEE
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGDFQGKCF 237 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~ 237 (292)
+-++|.+|+||||+|+.++..+...|..+.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 5789999999999999999987666654433
No 181
>PRK06547 hypothetical protein; Provisional
Probab=96.51 E-value=0.0033 Score=51.24 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....+|+|.|++|+||||+|+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999874
No 182
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.50 E-value=0.0037 Score=51.27 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=22.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999987653
No 183
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.0037 Score=60.35 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=40.1
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44567899998888888877532 234678899999999999999999875
No 184
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.49 E-value=0.0048 Score=50.21 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+|.+.|++|+||||+|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999997643
No 185
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.49 E-value=0.0054 Score=52.33 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.....+++|.|..|.|||||++.+...+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 356889999999999999999999987654
No 186
>PTZ00035 Rad51 protein; Provisional
Probab=96.49 E-value=0.01 Score=53.73 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+.++|..+-....++.|+|.+|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345666776444568899999999999999999887543
No 187
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.019 Score=50.41 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+.+++.++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999998876544
No 188
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0054 Score=51.08 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
....++.++|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4578999999999999999999999764432233444
No 189
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.47 E-value=0.01 Score=51.35 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEec--cccccccccHHHHHHHHHHHHhcccc-------CCCCCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRN--VRDESNKKGVVHVRDEVICEVLEENL-------KIGTSI 272 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~~ 272 (292)
....+++++|.+|+|||||++.+..-... -.+.+++.. +...+ .....+-..+++..++.... ++++-.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34678999999999999999999875432 223344421 11111 22334445666666654322 122221
Q ss_pred -cHHHHHHHhCCceEEEEEeC
Q 040979 273 -IPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 273 -~~~~l~~~L~~kr~LlVLDD 292 (292)
-.-.+.+.|.-+.=|||.|.
T Consensus 115 rQRi~IARALal~P~liV~DE 135 (268)
T COG4608 115 RQRIGIARALALNPKLIVADE 135 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecC
Confidence 12235566677777888884
No 190
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.44 E-value=0.003 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|++|+||||+|+.+++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 191
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.44 E-value=0.002 Score=48.15 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=18.7
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|-|+|.+|+|||+||+.++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977643
No 192
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.43 E-value=0.0032 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
++|.+.|++|+||||+|+.+.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.031 Score=49.93 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.7
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
++|.+.....+..+..........+-++|++|+||||+|.++++.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 45566666666666653333344699999999999999999999765
No 194
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.42 E-value=0.007 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCF 237 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~ 237 (292)
.++.|+|..|.||||++..+...+.......++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~ 34 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHIL 34 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEE
Confidence 368999999999999999988876544433333
No 195
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.42 E-value=0.012 Score=58.77 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHhhhhc-------CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-------LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++|.+..++.+...+... ......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789888888887776521 12245788999999999999999998774
No 196
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.42 E-value=0.01 Score=50.03 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=37.0
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh-------CCCCceEEEeccccccccccHHHHHHHHHH
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS-------GDFQGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~-------~~f~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
+.+.+...+.. ..+..|+|++|+||||++..+...+. ..-...+.++ ...+..+..++..+..
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~----~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVV----SPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEE----ESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceee----cCCchhHHHHHHHHHh
Confidence 44455554542 12788999999999988887777651 2334444444 3445566666666665
No 197
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.42 E-value=0.0057 Score=47.51 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.0
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+..++.+.+...-....++.+.|.-|.||||+++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444444322345689999999999999999999964
No 198
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.41 E-value=0.012 Score=58.42 Aligned_cols=93 Identities=18% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccC-
Q 040979 190 IEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLK- 267 (292)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~- 267 (292)
...|..+|. .+=...+++-|+|.+|+||||||..++......=..++|+. ..+.+++ ..+++++....+
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E~t~~~-----~~A~~lGvDl~~l 115 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AEHALDP-----DYAKKLGVDTDSL 115 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchhH-----HHHHHcCCChhHe
Confidence 345666675 34456789999999999999999887665433445677775 4433442 245555443221
Q ss_pred ----CCCCC-cHHHHHHHhCC-ceEEEEEe
Q 040979 268 ----IGTSI-IPPRIQKRLQL-MKVLIVLD 291 (292)
Q Consensus 268 ----~~~~~-~~~~l~~~L~~-kr~LlVLD 291 (292)
....+ ....+...++. +--|||+|
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVID 145 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVID 145 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEc
Confidence 11112 33444444444 45588888
No 199
>PRK10867 signal recognition particle protein; Provisional
Probab=96.41 E-value=0.014 Score=54.57 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+|.++|.+|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999888866544
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.39 E-value=0.0042 Score=52.63 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+...|.|+|.+|+||||||..+.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999999754
No 201
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.38 E-value=0.007 Score=52.74 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...+++.|.|.+|+|||+||..++.+...+=+.+++++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999999999999998775433334556665
No 202
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.013 Score=57.10 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVL 262 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 262 (292)
..-+++-++|++|+||||||+.++++. .|.. +=+. .|+..+...+-..|...+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYsV-vEIN----ASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYSV-VEIN----ASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--CceE-EEec----ccccccHHHHHHHHHHHHh
Confidence 457899999999999999999999873 3332 2233 6777777777777766653
No 203
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0055 Score=56.82 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 34567889888888888777633 224558899999999999999999875
No 204
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.014 Score=56.58 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=24.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...|-|.|..|+|||+|++++++.+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc
Confidence 4568899999999999999999987644
No 205
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.0079 Score=53.88 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=27.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
.+++.+.|.||+||||+|.+.+-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999887766655444444
No 206
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.35 E-value=0.016 Score=54.61 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=37.3
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.++..+|..+=....++.|.|.+|+|||||+..++.....+-..++++.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445666766644455789999999999999999999987654333456654
No 207
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.34 E-value=0.015 Score=49.20 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=48.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEecccccc-ccccHHHHHHHHHHHHhcccc----CCCCCC-------
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDES-NKKGVVHVRDEVICEVLEENL----KIGTSI------- 272 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~~~----~~~~~~------- 272 (292)
..++|.|.+|+|||+|+..+.+..... ..+++. +. ......++.+++...-..... ...+..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 568999999999999999999986433 224443 32 334566666666433111111 111111
Q ss_pred ------cHHHHHHHhCCceEEEEEeC
Q 040979 273 ------IPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 273 ------~~~~l~~~L~~kr~LlVLDD 292 (292)
..+.+++ +++.+||++||
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Ds 113 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDS 113 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEET
T ss_pred hccchhhhHHHhh--cCCceeehhhh
Confidence 1233344 68999999997
No 208
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.034 Score=52.90 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=39.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|.+.-+..+...+..+ .-.....++|+.|+||||+|+.++..+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456889988888888877642 224566789999999999999999865
No 209
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.34 E-value=0.017 Score=54.45 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=38.4
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..+.++..+|..+-....++.|.|.+|+|||||+..++.....+-..++++.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455677777644456789999999999999999999887654433455664
No 210
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.32 E-value=0.0046 Score=52.28 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=50.6
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC-CCC-ceEEEeccccccccccHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG-DFQ-GKCFMRNVRDESNKKGVVHVRD 255 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~-~~~~~~~~~~~~~~~~~~~~~~ 255 (292)
....++||-+..++.+.-+.. +.+...+.|.||+|+||||-+..+++++-+ .|. .+.=+. .|+..++.-+..
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn 97 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRN 97 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHH
Confidence 345679999988887765544 445778899999999999999999997543 343 333333 555555555444
Q ss_pred HH
Q 040979 256 EV 257 (292)
Q Consensus 256 ~i 257 (292)
.|
T Consensus 98 ~I 99 (333)
T KOG0991|consen 98 KI 99 (333)
T ss_pred HH
Confidence 43
No 211
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0048 Score=58.00 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-+..|..++..+. -...+.++|+.|+||||+|+.+++.+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345678999888888888776332 235688999999999999999998653
No 212
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0035 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.++|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 213
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.29 E-value=0.0036 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|.|.|++|+||||+|+.+..++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 214
>PRK06217 hypothetical protein; Validated
Probab=96.29 E-value=0.0034 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|.|++|.||||||+.+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999754
No 215
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.28 E-value=0.0032 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.|+|++|+||||+|+.++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 216
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.26 E-value=0.0042 Score=49.16 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhC
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
|.++|++|.||||+|+.+...+.-
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999987643
No 217
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.26 E-value=0.018 Score=49.35 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+..|.++|..+=....++.|.|.+|+|||+||..+......+-+.++|++
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34566666655566899999999999999999987765334455667775
No 218
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.25 E-value=0.0032 Score=52.35 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|+|.|.+|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 219
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.031 Score=54.33 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|.+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4456889887777777777632 224678899999999999999999865
No 220
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.23 E-value=0.0036 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 221
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.22 E-value=0.059 Score=44.32 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+.++|+.|+||||+|+.+...+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46788999999999999999998764
No 222
>PRK13948 shikimate kinase; Provisional
Probab=96.22 E-value=0.0046 Score=50.86 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.|.++||.|+||||+++.+.+++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999876433
No 223
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.22 E-value=0.0056 Score=50.30 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=30.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+++.|+|+.|+|||||++.+..+....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 478999999999999999999999888886555554
No 224
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.21 E-value=0.024 Score=53.19 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=51.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c-----
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I----- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~----- 273 (292)
..-++|.|.+|+|||||+..+......+...++.+.-+. .......++.++++..-..... ...+.. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG--ER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec--cCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999998887654433333332121 2345566666666643211111 111111 1
Q ss_pred ---HHHHHHHh---CCceEEEEEeC
Q 040979 274 ---PPRIQKRL---QLMKVLIVLDD 292 (292)
Q Consensus 274 ---~~~l~~~L---~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Ds 246 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDN 246 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecc
Confidence 12244555 66999999997
No 225
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.037 Score=49.53 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+++|.+..++.+...+..+ .-.....++|+.|+||||+|+.++..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 35778887788888877632 335677899999999999999999965
No 226
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.21 E-value=0.0037 Score=53.08 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 227
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.19 E-value=0.021 Score=53.24 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c----
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I---- 273 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~---- 273 (292)
....++|.|..|+|||||++.++..... +..++.. +. .......++..+.+..-+.... ...+.. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iG--ER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IG--ERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-Ee--cCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 4567899999999999999988876432 2333332 11 2234555655555443221111 111211 1
Q ss_pred ----HHHHHHHh--CCceEEEEEeC
Q 040979 274 ----PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 ----~~~l~~~L--~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~Ds 256 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDS 256 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 11133444 46899999997
No 228
>PRK13949 shikimate kinase; Provisional
Probab=96.19 E-value=0.0047 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|+|+.|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.03 Score=56.45 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344578998888888888876332 23567899999999999999999875
No 230
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.19 E-value=0.0091 Score=46.93 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=26.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh-CCCCceEEEe
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS-GDFQGKCFMR 239 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~~~ 239 (292)
.+|.|+|..|+|||||++.+.+.+. ..+...+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 3789999999999999999999876 4466665554
No 231
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.18 E-value=0.0046 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++.|.|++|+|||||++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.026 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 233
>PRK13946 shikimate kinase; Provisional
Probab=96.18 E-value=0.0045 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.+.|.+.||+|+||||+++.+++++.-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457999999999999999999998643
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.18 E-value=0.015 Score=58.31 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..+.|.+..++.+.+.+.. +-...+-+.++|++|+|||+||+++++....+|
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4466777777766665431 112345688999999999999999999865544
No 235
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.18 E-value=0.012 Score=54.69 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=47.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c----
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I---- 273 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~---- 273 (292)
....++|.|..|+|||||++.++..... +..++.. ++ .......++.++++..-+.... ...+.. .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~l-IG--ER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGL-VG--ERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEE-Ec--CChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3567999999999999999888864322 3334432 11 2234555566665443211111 111111 1
Q ss_pred ----HHHHHHHh--CCceEEEEEeC
Q 040979 274 ----PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 ----~~~l~~~L--~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 11133444 57999999997
No 236
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.17 E-value=0.025 Score=53.10 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=50.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c----
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I---- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~---- 273 (292)
..-++|.|.+|+|||||+..+......+. +.+++.. +. .......++..+++..-..... ...+.. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iG--ER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VG--ERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CC--cchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45789999999999999999998765443 4444443 21 2234566666666543211111 111211 1
Q ss_pred ----HHHHHHHh---CCceEEEEEeC
Q 040979 274 ----PPRIQKRL---QLMKVLIVLDD 292 (292)
Q Consensus 274 ----~~~l~~~L---~~kr~LlVLDD 292 (292)
.-.+.+++ .++.+||++||
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Ds 245 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDN 245 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecc
Confidence 22244555 37899999997
No 237
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.17 E-value=0.029 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999888754
No 238
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.17 E-value=0.019 Score=51.52 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=40.2
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC------CceEEEeccccccccccHHHHH
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF------QGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
..+.++|..+-....++-|+|.+|+|||+||..++....... ..++|+. ....+.+..+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~----te~~f~~~rl~ 154 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID----TEGTFRPERIE 154 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe----CCCCcCHHHHH
Confidence 345555553445578999999999999999999987643221 3567776 44445555543
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.16 E-value=0.022 Score=46.25 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=32.2
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
++|....+..+.+.+..-......|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 357777777777766643333366779999999999999999984
No 240
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.15 E-value=0.013 Score=49.90 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+..+.++|..+=.....+.|.|.+|+|||||+..+.......-+.++|+.
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34556666444456789999999999999999987765333445566665
No 241
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.15 E-value=0.011 Score=50.02 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977765443
No 242
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.14 E-value=0.017 Score=53.32 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHhhhhc------------CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE------------LHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..++|.+..+..+...+... ....+.|.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35888887777765444311 11246789999999999999999999876554
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.023 Score=51.86 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.+++.++|+.|+||||++..++......-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999886533322344443
No 244
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.044 Score=50.50 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQG 234 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 234 (292)
.-..+-|||..|.|||.|++++.+......+.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~ 143 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPN 143 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence 46889999999999999999999987776653
No 245
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0054 Score=51.04 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 246
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0045 Score=49.82 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEEcCCcccHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~ 225 (292)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 247
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.09 E-value=0.02 Score=52.93 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHhhhhc--------C----CCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE--------L----HDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~--------~----~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..++|.+..++.+...+... . .....+.++|++|+|||+||+.+...+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45889888888877665320 0 1146789999999999999999999765543
No 248
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.09 E-value=0.0046 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998874
No 249
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.05 E-value=0.011 Score=53.72 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|.+..++.+...+..+ .-...+-++|.+|+||||+|+.+...+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34557899999999888877632 2345778999999999999999998753
No 250
>PRK05642 DNA replication initiation factor; Validated
Probab=96.04 E-value=0.0097 Score=51.02 Aligned_cols=36 Identities=14% Similarity=0.412 Sum_probs=27.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.+.|+|..|+|||.|++++++++...-..++++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 367899999999999999999987654333445554
No 251
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.04 E-value=0.011 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=21.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+++.+.|.||+||||+|.+.+-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 57889999999999999987775443
No 252
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.03 E-value=0.0096 Score=56.88 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=41.9
Q ss_pred CccccchhHHHHHHhhhh---cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 182 GFVGLNSRIEDLKSLLRL---ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
++.-...-++++..||.. +....+++.++|++|+||||.++.+++++ .|+..-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 344445667788888873 33446799999999999999999999986 456666654
No 253
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.00 E-value=0.0087 Score=48.71 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4678999999999999999999987654
No 254
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.98 E-value=0.0084 Score=52.56 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=22.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+.|+|+|-||+||||++..++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999999986554
No 255
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.027 Score=57.24 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=41.4
Q ss_pred ccccchhHHHHHHhhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 183 FVGLNSRIEDLKSLLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++||+.+++.|.+.+.. ......++.+.|.+|||||+|+++|...+...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 78999999999887764 33457799999999999999999999976654
No 256
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.97 E-value=0.038 Score=51.70 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c-----
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I----- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~----- 273 (292)
..-++|.|.+|+|||||+..+......+...++.+.-++ .......++.++++..-..... ...+.. .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIG--ER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEec--CCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999887654433333332221 2234556666666433111111 111211 1
Q ss_pred ---HHHHHHHh---CCceEEEEEeC
Q 040979 274 ---PPRIQKRL---QLMKVLIVLDD 292 (292)
Q Consensus 274 ---~~~l~~~L---~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Ds 245 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDN 245 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecc
Confidence 12244555 45899999997
No 257
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.96 E-value=0.015 Score=50.02 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=28.7
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++.+.+.....+..+|||.|.+|.|||||...+...+...
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444334567899999999999999999998876543
No 258
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.95 E-value=0.0054 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=21.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+.|+|+.|+|||||++.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865433
No 259
>PF14516 AAA_35: AAA-like domain
Probab=95.95 E-value=0.13 Score=46.58 Aligned_cols=113 Identities=11% Similarity=0.150 Sum_probs=65.1
Q ss_pred CCCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEeccccccc--cccHH
Q 040979 175 SDLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMRNVRDESN--KKGVV 251 (292)
Q Consensus 175 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~--~~~~~ 251 (292)
..+.+....+.|..--+.+.+.+. .....+.|.|+-.+|||+|...+.++... .|.. +++ ++..... ..+..
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~---~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~i-d~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIV---QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYI-DLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEE-EeecCCCcccCCHH
Confidence 345556667888844444444343 23568999999999999999999987754 3443 333 4444332 23555
Q ss_pred HHHHHHHHHHhc----ccc-------CCCCCC-cHHHHHHHh-C--CceEEEEEeC
Q 040979 252 HVRDEVICEVLE----ENL-------KIGTSI-IPPRIQKRL-Q--LMKVLIVLDD 292 (292)
Q Consensus 252 ~~~~~il~~l~~----~~~-------~~~~~~-~~~~l~~~L-~--~kr~LlVLDD 292 (292)
.+...+...+.. ... ...... ....+.+.+ . +++++|+||+
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDE 135 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDE 135 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEec
Confidence 555555544432 211 011111 334444442 2 4899999995
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.024 Score=52.24 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+++.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988654
No 261
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.94 E-value=0.0066 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEcCCcccHHHHHHHHHHHHh
Q 040979 207 IGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
|.|.|.+|+|||||.+.+.+.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999764
No 262
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.014 Score=47.19 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
....+|-+.|++|.||||||.++.+++...--.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4567899999999999999999999876654444433
No 263
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.93 E-value=0.0054 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.+.++|..|+|||++++....++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 4678999999999999999988754
No 264
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.93 E-value=0.0074 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|+|+.|+||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999999864
No 265
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0069 Score=48.24 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 588999999999999999998753
No 266
>PRK09087 hypothetical protein; Validated
Probab=95.92 E-value=0.016 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.+.|+|.+|+|||+|++.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999988653
No 267
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.011 Score=56.43 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-+..+...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34567889988888877766532 234678899999999999999999865
No 268
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.90 E-value=0.0055 Score=49.18 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.++|++|+||||+|+.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 269
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.90 E-value=0.0086 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++.|.|++|+||||+|+.+++++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 270
>PRK14530 adenylate kinase; Provisional
Probab=95.90 E-value=0.0074 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|++|+||||+|+.+++++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 271
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.89 E-value=0.024 Score=49.46 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=31.2
Q ss_pred eEEEEEEcCCcccHHHHH-HHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIA-SVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
..-++|.|..|+|||+|| ..+.++. +-+..+.+.-+. .......++.+++.+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iG--er~~ev~e~~~~~~~ 121 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIG--QKASTVAQVVKTLEE 121 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecc--cchHHHHHHHHHHHh
Confidence 456899999999999996 5565543 233443333221 223455566666654
No 272
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.89 E-value=0.01 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEcCCcccHHHHHHHHHHHHhCC
Q 040979 209 IWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 209 I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
|+||+|+||||+++.+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999976655
No 273
>PRK13975 thymidylate kinase; Provisional
Probab=95.89 E-value=0.0085 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998754
No 274
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.89 E-value=0.008 Score=48.95 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.|+|+.|.|||||++.+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 275
>PF13245 AAA_19: Part of AAA domain
Probab=95.88 E-value=0.03 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=17.9
Q ss_pred eEEEEEEcCCcccHHHHHH-HHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIAS-VVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~-~v~~~~ 228 (292)
.+++.|.|.+|.|||+++. .+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567889999999995555 444444
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=95.88 E-value=0.038 Score=49.88 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++.++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999888876543
No 277
>CHL00181 cbbX CbbX; Provisional
Probab=95.87 E-value=0.013 Score=51.82 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.2
Q ss_pred CccccchhHHHHHHhhh---h-------c---CCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLR---L-------E---LHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~---~-------~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++|.+..++++.++.. . + ......+.++|.+|+||||+|+.+++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47777666665544321 0 1 1124458899999999999999998864
No 278
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.87 E-value=0.025 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+|.|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999998754
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.87 E-value=0.011 Score=51.07 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG 234 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 234 (292)
++..+|.++||+|.||||..+.++..+...+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 446788899999999999999999887666543
No 280
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.85 E-value=0.045 Score=47.81 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=48.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh----CCCCceEEEeccccccc-cccHHHHHHHHHHHHhcccc----CCCCCC-c
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS----GDFQGKCFMRNVRDESN-KKGVVHVRDEVICEVLEENL----KIGTSI-I 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~----~~f~~~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~~~----~~~~~~-~ 273 (292)
..-++|.|-.|+|||+|+..+.++.. .+-+.+++.. +.+ .....++.+++...-..... ...+.. .
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 45679999999999999999888643 1123445444 322 34566666666543211111 111111 1
Q ss_pred --------HHHHHHHhC---CceEEEEEeC
Q 040979 274 --------PPRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 274 --------~~~l~~~L~---~kr~LlVLDD 292 (292)
.-.+.|+++ ++++||++||
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ 174 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTD 174 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 122345543 6899999997
No 281
>PRK04182 cytidylate kinase; Provisional
Probab=95.85 E-value=0.0083 Score=48.73 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.|.|+.|+||||+|+.+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 282
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.85 E-value=0.011 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+.+.|.+|+|||+||+.++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999998653
No 283
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.83 E-value=0.0067 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+++.|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998853
No 284
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.83 E-value=0.0081 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999999864
No 285
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.83 E-value=0.023 Score=55.49 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=49.6
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEeccccccccccHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMRNVRDESNKKGVVHVRDEVI 258 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~il 258 (292)
...++|.+..++.+...+..+ +.+.++|++|+||||+|+.+.+.+... |...+.+.+ ...+...++..++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n-----~~~~~~~~~~~v~ 87 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN-----PEDPNMPRIVEVP 87 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC-----CCCCchHHHHHHH
Confidence 346788887777666666532 256699999999999999999987654 344444431 1234455566666
Q ss_pred HHHhc
Q 040979 259 CEVLE 263 (292)
Q Consensus 259 ~~l~~ 263 (292)
..++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66543
No 286
>PRK04296 thymidine kinase; Provisional
Probab=95.82 E-value=0.01 Score=49.13 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=25.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
.++.++|..|.||||++..++.+....-..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999998765544333333
No 287
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.013 Score=57.22 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-+..|...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899888888888877632 224558899999999999999999865
No 288
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.80 E-value=0.014 Score=58.89 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHhhhh----cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL----ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
....|.+.-++.+.+++.. +......+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3577888777777775541 223345799999999999999999999875544
No 289
>PRK06620 hypothetical protein; Validated
Probab=95.78 E-value=0.0066 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=21.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
+.+-|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999998775
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.012 Score=57.15 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34567999998888888887633 234578899999999999999999865
No 291
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.78 E-value=0.058 Score=52.41 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCCCCccccchhHHHHHHhhhh--cC-CCeEEEEEEcCCcccHHHHHHHHHHHHh-----C---CCCceEEEeccccccc
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL--EL-HDVRVIGIWGMGGIGKTTIASVVFHQIS-----G---DFQGKCFMRNVRDESN 246 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~--~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~-----~---~f~~~~~~~~~~~~~~ 246 (292)
..+..+-+|+.+..+|...+.. .+ ...+.+-|.|.+|+|||..+..|.+.++ . .|+. +.+.. -.
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINg----m~ 467 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEING----LR 467 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcc----ee
Confidence 3566788999999999998863 22 4466999999999999999999998543 1 2442 34432 22
Q ss_pred cccHHHHHHHHHHHHhccccCCCCCCcHHHHHHHhC-----CceEEEEEeC
Q 040979 247 KKGVVHVRDEVICEVLEENLKIGTSIIPPRIQKRLQ-----LMKVLIVLDD 292 (292)
Q Consensus 247 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDD 292 (292)
-..+.++-..|+.++.+..... .. ..+.|..+.. .+.++|++|+
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~-~~-al~~L~~~f~~~k~~~~~~VvLiDE 516 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTW-DA-ALEALNFRFTVPKPKRSTTVVLIDE 516 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccH-HH-HHHHHHHhhccCCCCCCCEEEEecc
Confidence 3457778888888876654311 11 4555665554 3567888774
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.041 Score=52.43 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++++|.+|+||||++..++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999998876543
No 293
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.77 E-value=0.014 Score=49.61 Aligned_cols=49 Identities=24% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
..|.++|..+=....++.|.|.+|+|||+|+..+..+-..+ =+.+++++
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 45666665444557899999999999999999877654333 34556665
No 294
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.77 E-value=0.0099 Score=55.90 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++|++..++.+...+.. ...+.+.|.+|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aala----g~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHcc----CCCEEEECCCChhHHHHHHHHHHHhc
Confidence 4689999888877655542 34588999999999999999998654
No 295
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.76 E-value=0.02 Score=56.06 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEeccccccccccHHHHHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMRNVRDESNKKGVVHVRDEV 257 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i 257 (292)
....++|.+..++.+...+..+ +.+.++|.+|+||||+|+.+.+.+.. .++...|+.+ ...+...+++.+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~~v 99 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIRTV 99 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHHHH
Confidence 3456888887777777666532 46899999999999999999987643 3577778763 334666667777
Q ss_pred HHHHhc
Q 040979 258 ICEVLE 263 (292)
Q Consensus 258 l~~l~~ 263 (292)
+..++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 665543
No 296
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.75 E-value=0.021 Score=43.73 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=35.2
Q ss_pred CCccccchhHHHHHHhhh-----hcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLR-----LELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~-----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+.|.+-..+.+.+.+. ..++.+-+++.+|.+|+|||.+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357777655555555443 234557888999999999999999999864
No 297
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.019 Score=52.21 Aligned_cols=53 Identities=21% Similarity=0.151 Sum_probs=41.7
Q ss_pred CCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.....++|.+...+.+...+..+ .-...+.++|..|+||||+|..+++.+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 3445667899998888888877633 2345788999999999999999999753
No 298
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.045 Score=50.10 Aligned_cols=95 Identities=21% Similarity=0.160 Sum_probs=54.9
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccCC
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKI 268 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 268 (292)
...++...|.-+--...++.|-|-+|+|||||.-.++.++..+- .+..++ ..-++.++. --+..++....++
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHH-HHHHHhCCCccce
Confidence 34456666654445578999999999999999999999988766 444443 233333321 1233444222211
Q ss_pred --CCCCcHHHHHHHhC-CceEEEEEe
Q 040979 269 --GTSIIPPRIQKRLQ-LMKVLIVLD 291 (292)
Q Consensus 269 --~~~~~~~~l~~~L~-~kr~LlVLD 291 (292)
-...-.+.+...+. .+.-|+|+|
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 11112333334443 466788888
No 299
>PRK05439 pantothenate kinase; Provisional
Probab=95.74 E-value=0.017 Score=51.48 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998886543
No 300
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.73 E-value=0.021 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.049 Sum_probs=24.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..-.+|+|.+|+|||||++.+++.+..+.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~ 444 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNN 444 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcC
Confidence 45678999999999999999999876654
No 301
>PRK05922 type III secretion system ATPase; Validated
Probab=95.73 E-value=0.024 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||.+.+..+.
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC
Confidence 34568999999999999999888754
No 302
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.72 E-value=0.0086 Score=48.12 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=17.9
Q ss_pred EEEEcCCcccHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (292)
|+|.|..|+|||||++.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 303
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.0083 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..-|.|.|.+|+||||||..++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 356889999999999999999974
No 304
>PRK15453 phosphoribulokinase; Provisional
Probab=95.72 E-value=0.019 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|+|.|.+|+||||+|+.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
No 305
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.72 E-value=0.0092 Score=47.75 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
+++|+|+.|+|||||+..+...++.+ +...+.-.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 47899999999999999999987654 55444443
No 306
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.01 Score=48.00 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=47.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCc-eEEEecccc--------ccccccHHHHHHHHHHHHhcccc-CCCC--CC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQG-KCFMRNVRD--------ESNKKGVVHVRDEVICEVLEENL-KIGT--SI 272 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~-~~~~~~~~~--------~~~~~~~~~~~~~il~~l~~~~~-~~~~--~~ 272 (292)
..|.++||.|.||||+.+.+++.+.-.|-. =.++....+ .........+=..++..+....+ -+.+ --
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~ 82 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGA 82 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCcc
Confidence 357899999999999999999876555421 112210000 00112233333445555544432 1111 11
Q ss_pred -cHHHHHHHhCCceEEEEEe
Q 040979 273 -IPPRIQKRLQLMKVLIVLD 291 (292)
Q Consensus 273 -~~~~l~~~L~~kr~LlVLD 291 (292)
..++-+.+|+++-.+|-||
T Consensus 83 v~~~enr~~l~~~g~vv~L~ 102 (172)
T COG0703 83 VLSEENRNLLKKRGIVVYLD 102 (172)
T ss_pred ccCHHHHHHHHhCCeEEEEe
Confidence 4566777777776666554
No 307
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.69 E-value=0.017 Score=55.95 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=34.5
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+-|.+-.+.|.++.........+|.++|+.|+||||+|+.++.++..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3444554444444444434455678999999999999999999998754
No 308
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.69 E-value=0.03 Score=50.15 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccCC--
Q 040979 192 DLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKI-- 268 (292)
Q Consensus 192 ~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-- 268 (292)
.|...|. .+-+..+++-|+|..|+||||||..+..+....-..++|+. ..+..++ ..+..++.....+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID----~e~~ld~-----~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID----AEHALDP-----EYAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE----SSS---H-----HHHHHTT--GGGEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec----Ccccchh-----hHHHhcCccccceEE
Confidence 4555554 22244689999999999999999998887655555678886 4333333 4445554332211
Q ss_pred --CCC-C-cHHHHHHHhCC-ceEEEEEe
Q 040979 269 --GTS-I-IPPRIQKRLQL-MKVLIVLD 291 (292)
Q Consensus 269 --~~~-~-~~~~l~~~L~~-kr~LlVLD 291 (292)
++. + ....+...++. ..-++|+|
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvD 138 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVD 138 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEe
Confidence 111 1 33334444443 34588888
No 309
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.68 E-value=0.018 Score=50.55 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
++++|+|.+|+|||||+..+...++.+. .+.-+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 5799999999999999999999887765 34444
No 310
>PRK04328 hypothetical protein; Provisional
Probab=95.68 E-value=0.024 Score=49.05 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=35.2
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|.++|..+=....++.|.|.+|+|||+||..+..+-..+-+.++++.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3566666544456789999999999999999997765333345566665
No 311
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.67 E-value=0.011 Score=47.72 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.|.|+.|+||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 312
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.67 E-value=0.01 Score=42.50 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999997754
No 313
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.67 E-value=0.014 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=22.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|+|+|-||+||||+|..++..+...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 578889999999999999998876543
No 314
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.66 E-value=0.01 Score=49.98 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++|+|.|-||+||||++..++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 46899999999999999998886554
No 315
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.66 E-value=0.061 Score=50.09 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+|.++|.+|+||||++..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998865543
No 316
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.66 E-value=0.01 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.66 E-value=0.045 Score=47.77 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
....++.|.|.+|+||||++..++...... =..++|++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345688999999999999999998875443 34556665
No 318
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.014 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999875
No 319
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.65 E-value=0.02 Score=49.82 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++|.|.|-||+||||++..++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999987654
No 320
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.64 E-value=0.02 Score=47.83 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...++|.+..+..++-... +..-+.++|.+|+|||+||+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 3467888877776653333 235789999999999999999887
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.63 E-value=0.021 Score=47.82 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++++++++|..|+|||||...+.++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999887543
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.60 E-value=0.031 Score=47.79 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=29.5
Q ss_pred HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH-hCCCCceEEEe
Q 040979 193 LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI-SGDFQGKCFMR 239 (292)
Q Consensus 193 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~-~~~f~~~~~~~ 239 (292)
+.+.+..+-....++.|.|.+|+||||||..++... +.. ..+++++
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 333343233446799999999999999987666544 333 3445553
No 323
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=49.41 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=23.2
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+.+.|+|++|+|||||++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445788999999999999999998754
No 324
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.58 E-value=0.017 Score=55.49 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.1
Q ss_pred hhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 196 LLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 196 ~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++.....++.+|+|.|.+|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 344445568899999999999999999998764
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.58 E-value=0.03 Score=50.83 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...+.|.|..|.||||+.+.+.+.+.......++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t 156 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT 156 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence 46899999999999999999998776555555554
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.58 E-value=0.03 Score=49.29 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCF 237 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~ 237 (292)
.+..++.|.|.+|.|||||...+.+.+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468999999999999999999999988766544443
No 327
>PRK13768 GTPase; Provisional
Probab=95.57 E-value=0.022 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.++.|.|.||+||||++..+...+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57889999999999999998886544
No 328
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.57 E-value=0.01 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 329
>PRK14527 adenylate kinase; Provisional
Probab=95.55 E-value=0.013 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+|.+.|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 330
>PLN02200 adenylate kinase family protein
Probab=95.55 E-value=0.014 Score=50.01 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+|.|.|++|+||||+|+.++++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998764
No 331
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.53 E-value=0.084 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++.|.|.+|+||||+|..+..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 57899999999999999998764
No 332
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.53 E-value=0.013 Score=49.01 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998776
No 333
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.53 E-value=0.019 Score=46.91 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=25.2
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.|.|.+|+|||+|+..+......+=+.++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999999998876443334566664
No 334
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.51 E-value=0.052 Score=50.78 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEecccccc-ccccHHHHHHHHHHHHhcccc----CCCCCC-c---
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMRNVRDES-NKKGVVHVRDEVICEVLEENL----KIGTSI-I--- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~~~----~~~~~~-~--- 273 (292)
..-++|.|.+|+|||+|+..+...... +-+.+++.. +. ......++.+++...-..... ...+.. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~----iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG----IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE----eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 457899999999999999998886542 234555543 32 234556666665543211111 111111 1
Q ss_pred -----HHHHHHHhC---CceEEEEEeC
Q 040979 274 -----PPRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 274 -----~~~l~~~L~---~kr~LlVLDD 292 (292)
.-.+.++++ ++.+||++||
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~Ds 240 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDN 240 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 222445654 5899999997
No 335
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.51 E-value=0.024 Score=51.05 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+..+|+|.|.+|+|||||+..+...+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998887654
No 336
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.50 E-value=0.01 Score=46.30 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=30.9
Q ss_pred cccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 184 VGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 184 ~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
+|.-..++.+.+-+..-......|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 35555666666666543344567899999999999999998885
No 337
>PRK08149 ATP synthase SpaL; Validated
Probab=95.50 E-value=0.047 Score=50.82 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=47.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC------
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI------ 272 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~------ 272 (292)
....++|.|..|+|||||.+.++..... +..++.. + -........+..+++........ ...+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~-I--g~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL-I--GERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE-E--eeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 4567899999999999999988864322 2222211 1 12345666666666654321111 111111
Q ss_pred ---cHHHHHHHh--CCceEEEEEeC
Q 040979 273 ---IPPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 273 ---~~~~l~~~L--~~kr~LlVLDD 292 (292)
....+.+++ +++++||++||
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Ds 249 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDS 249 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccc
Confidence 111223333 47999999997
No 338
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.50 E-value=0.017 Score=51.10 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...-+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999998776554
No 339
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.50 E-value=0.04 Score=51.24 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c----
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I---- 273 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~---- 273 (292)
....++|.|..|+|||||++.+...... ....+... -.......++.+..+..-+.... ...+.. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~-~~gvi~~i----Ger~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA-DVVVIALV----GERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEE----eeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 3467999999999999999888865432 12222222 12234455555554443221111 111111 1
Q ss_pred ----HHHHHHHh--CCceEEEEEeC
Q 040979 274 ----PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 ----~~~l~~~L--~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~Ds 238 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDS 238 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccc
Confidence 11133444 46899999997
No 340
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.49 E-value=0.049 Score=46.58 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=29.3
Q ss_pred cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 200 ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 200 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
+-....++.|.|.+|+|||+++..++.+...+ =..++|++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 33456799999999999999999988765443 23445554
No 341
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.48 E-value=0.089 Score=42.71 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=42.3
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhccccCCCCCCcHHHHHHHhCC--c
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENLKIGTSIIPPRIQKRLQL--M 284 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~L~~--k 284 (292)
+.|.|.+|+|||++|..+... ......++. ..+..+. ++++.+............+.+....|.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 578999999999999998765 233455554 3333333 34555544332222223332333445555532 2
Q ss_pred eEEEEEe
Q 040979 285 KVLIVLD 291 (292)
Q Consensus 285 r~LlVLD 291 (292)
.-.+++|
T Consensus 74 ~~~VLID 80 (169)
T cd00544 74 GDVVLID 80 (169)
T ss_pred CCEEEEE
Confidence 2367777
No 342
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.48 E-value=0.048 Score=45.00 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..|.|.|..|+||||+++.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999997654
No 343
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.47 E-value=0.024 Score=46.75 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+.|.|..|.|||||++.+...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999887543
No 344
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.47 E-value=0.06 Score=48.39 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++|.|..|.|||||.+.+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 346789999999999999998887543
No 345
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.012 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|+|.+|+|||||++.+.-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4467899999999999999999876
No 346
>PRK13695 putative NTPase; Provisional
Probab=95.44 E-value=0.02 Score=46.57 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+.|+|.+|+|||||++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988754
No 347
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.44 E-value=0.013 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999874
No 348
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.44 E-value=0.024 Score=52.75 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=35.5
Q ss_pred CccccchhHHHHHHhhh-----hcC---------CCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 182 GFVGLNSRIEDLKSLLR-----LEL---------HDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~-----~~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.++|.+..++.+...+. ... ...+.+.++|++|+|||+||+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 47888887777644331 100 1235689999999999999999998654433
No 349
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.43 E-value=0.071 Score=45.16 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.++|..+=...+++.|.|.+|+|||++|..++.....+=..+++++
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455555433345789999999999999999998875433323445554
No 350
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.43 E-value=0.029 Score=42.57 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=24.6
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
+.+.|.||+||||++..++..+...-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68999999999999999999776543333333
No 351
>PRK06761 hypothetical protein; Provisional
Probab=95.43 E-value=0.021 Score=50.19 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=24.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|.|.|++|+||||+++.+++++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 578999999999999999999987654
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.12 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh--CCCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS--GDFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~--~~f~~~~~~~ 239 (292)
+.+++.++|+.|+||||-...++.+.. ..=..+.+++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 379999999999999876655555433 2223445554
No 353
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.42 E-value=0.022 Score=49.86 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++|+|.|-||+||||+|..++..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 67888899999999999998887764
No 354
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.42 E-value=0.022 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....|.++||.|+||||+++.+++++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999999875
No 355
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.41 E-value=0.049 Score=50.94 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=45.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc---CCCCCC-c-----
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL---KIGTSI-I----- 273 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~-~----- 273 (292)
....++|+|..|+|||||++.+...... ...++++. -.....+..+....+.......- ...+.. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~li----Gergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALV----GERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-Ceeeeeec----ccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 3567999999999999999877754321 22333332 11234555555544444311111 111111 1
Q ss_pred ---HHHHHHHh--CCceEEEEEeC
Q 040979 274 ---PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 ---~~~l~~~L--~~kr~LlVLDD 292 (292)
.-.+.+++ +++.+||++||
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~Ds 262 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDS 262 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccc
Confidence 11123333 46899999997
No 356
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.41 E-value=0.017 Score=49.77 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=36.1
Q ss_pred CCCccccchhHHH---HHHhhhh----cCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIED---LKSLLRL----ELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 180 ~~~~~gr~~~~~~---l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..+++|.+..... |.+.|.. ++...+.|..+|++|+|||.+|++++++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 3568888766654 3445542 4456899999999999999999998874
No 357
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.40 E-value=0.015 Score=43.64 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEcCCcccHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (292)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999873
No 358
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.40 E-value=0.028 Score=49.93 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=25.9
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++..+++.+.|-||+||||+|..++..++..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 4567999999999999999999988865543
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.084 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998753
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.38 E-value=0.053 Score=51.65 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEe
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~ 239 (292)
+..+.++|.-+=...+++.|.|.+|+||||||.++..+-..++ +.+++++
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3455666654445679999999999999999999876532333 5677776
No 361
>PHA02244 ATPase-like protein
Probab=95.37 E-value=0.024 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..|.|+|.+|+|||+||+++++.....
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 357789999999999999999976443
No 362
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.36 E-value=0.083 Score=50.03 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=36.1
Q ss_pred hhHHHHHHhhh-----hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 188 SRIEDLKSLLR-----LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 188 ~~~~~l~~~l~-----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
+-+.++..||. ...-+.+++.|+|++|+||||..+.++..+ .++..-|.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel--g~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL--GYQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh--Cceeeeec
Confidence 44566777776 334457899999999999999999998864 23444454
No 363
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.024 Score=55.22 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=39.6
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467999988888887777633 2345678999999999999999998753
No 364
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.35 E-value=0.016 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++.|+|..|.|||||++.++..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998654
No 365
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.35 E-value=0.041 Score=45.77 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.1
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+.+.+..++. ++-++..|.|.+|+||||+.+.+...+...
T Consensus 6 Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444555544 234678899999999999999988866554
No 366
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.35 E-value=0.015 Score=47.77 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=24.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
.+++.++|++|+||+||+..+.+.....|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 468999999999999999999887543443
No 367
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.35 E-value=0.019 Score=55.20 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=35.8
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..+++|.+..++.+...+.. .....+.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34689998888888766542 23456789999999999999999874
No 368
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.34 E-value=0.016 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 369
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.33 E-value=0.024 Score=56.95 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhhh----cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL----ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
....|.+.-++.+.++|.. ......++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4688998888888877763 223466899999999999999999998765544
No 370
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.33 E-value=0.017 Score=46.44 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=24.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+++|+|..|+|||||...+..+++.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 3689999999999999999999876554
No 371
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.32 E-value=0.013 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 372
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.021 Score=48.92 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=34.9
Q ss_pred CccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+-|.+-+.+++.+.+.. +-+..+-+.++|++|+|||.||+++++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345677777777765532 2245778899999999999999999985
No 373
>PRK14532 adenylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.+.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 374
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.29 E-value=0.037 Score=49.60 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=31.8
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.++=.......+...+.. .+.|.+.|.+|+||||+|+.++.++.-.|
T Consensus 46 ~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333333344445554532 34699999999999999999999765443
No 375
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.29 E-value=0.059 Score=44.72 Aligned_cols=27 Identities=26% Similarity=0.312 Sum_probs=23.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999987643
No 376
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.029 Score=52.89 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=39.6
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+..++.+...+..+ .-...+.++|..|+||||+|+.+++.+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34567899998888888877632 224667899999999999999999865
No 377
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.28 E-value=0.037 Score=51.56 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=47.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c---
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I--- 273 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~--- 273 (292)
.....++|.|..|+|||||.+.++..... +.+++.. ++ .......++.+..+..-+.... ...+.. .
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~l-iG--ERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLAL-IG--ERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCCC--CEEEEEE-Ec--cCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 34568999999999999999999886433 3333332 11 2234455555444332111111 111111 1
Q ss_pred -----HHHHHHHh--CCceEEEEEeC
Q 040979 274 -----PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 -----~~~l~~~L--~~kr~LlVLDD 292 (292)
.-.+.+++ +++++||++||
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~Ds 260 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDS 260 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 11133444 57999999997
No 378
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.048 Score=49.40 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=44.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC--C---C-CceEEEeccccccccccHHHHHHHHHHHHh
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG--D---F-QGKCFMRNVRDESNKKGVVHVRDEVICEVL 262 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~---f-~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 262 (292)
...+.++|..+-....++-|+|.+|+|||+||..++-...- . - ..++|+. ....+.+..+ .++++.++
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId----tE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID----TEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE----CCCCccHHHH-HHHHHHcC
Confidence 44566666644456789999999999999999987754221 1 1 2577776 5555666654 34445443
No 379
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.27 E-value=0.03 Score=48.84 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+|+|.|-||+||||+|..++..++..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 57888999999999999998876654
No 380
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.26 E-value=0.028 Score=49.25 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=22.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++|+|.|-||+||||++..++..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 46888899999999999998886654
No 381
>PRK14531 adenylate kinase; Provisional
Probab=95.25 E-value=0.019 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.++|++|+||||+++.++++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 382
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.24 E-value=0.05 Score=48.46 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.8
Q ss_pred cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 200 ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 200 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
......+++|.|.+|+|||||+..+......
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999998886543
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=95.23 E-value=0.068 Score=45.82 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
....++.|.|.+|+|||++|..+......+=+.+++++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34678999999999999999998876544434444553
No 384
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.23 E-value=0.021 Score=42.59 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~ 225 (292)
....++|.|.+|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999976
No 385
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.12 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+++++|..|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 57999999999999999999998653
No 386
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.22 E-value=0.018 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|.+.|.+|+||||+|+.+.+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998875
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.22 E-value=0.028 Score=44.60 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++++.|.+|+||||++..+...+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999998875443
No 388
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.22 E-value=0.029 Score=49.20 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=30.0
Q ss_pred HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 193 LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 193 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+...+........+|||.|.||+|||||.-.+..++.++
T Consensus 40 ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 40 LLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 444444445567899999999999999999988876554
No 389
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.22 E-value=0.092 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=33.6
Q ss_pred HHHHHHhhhhcC-CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 190 IEDLKSLLRLEL-HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 190 ~~~l~~~l~~~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+++...
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345666666432 668999999999999999999999987766
No 390
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.21 E-value=0.027 Score=49.49 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC--CCCceEEE
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG--DFQGKCFM 238 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~~~~~ 238 (292)
....+++|.+..+..+.+.+.. ........+|++|+|||+.|.+++.++-. .|+.++.-
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 3446688888888877776653 45778899999999999999999987543 37666553
No 391
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.21 E-value=0.032 Score=45.90 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEec
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRN 240 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~ 240 (292)
...|++-|+.|.|||||.......+++.|...+...+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 5789999999999999999999999888887665543
No 392
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.20 E-value=0.036 Score=44.54 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=24.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999987654
No 393
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.19 E-value=0.061 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||...+....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999998888654
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.19 E-value=0.037 Score=49.70 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++++|++|+||||++..++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999986654
No 395
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.18 E-value=0.029 Score=49.91 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|+|+|-||+||||+|..++..+...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~ 27 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEM 27 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 478888999999999999999876554
No 396
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.18 E-value=0.082 Score=50.69 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=38.1
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
..+..|.++|..+=...+++.|.|.+|+|||+||..+......+ =+.+.|++
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34456666665444567899999999999999999987754444 35667775
No 397
>PRK06820 type III secretion system ATPase; Validated
Probab=95.17 E-value=0.078 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||++.++...
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC
Confidence 34578999999999999999887643
No 398
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.033 Score=53.97 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 177 LTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 177 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|....+++|.+.-.+.+.+.+..+. -...+.++|+.|+||||+|+.++..+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455679999988888888887432 34567789999999999999998864
No 399
>COG4240 Predicted kinase [General function prediction only]
Probab=95.17 E-value=0.072 Score=45.02 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFM 238 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~ 238 (292)
...-+++|+|+-|+||||++..++..+.... +.+.-.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 3477899999999999999999999876655 444433
No 400
>PLN02348 phosphoribulokinase
Probab=95.17 E-value=0.024 Score=51.91 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.+...+|+|.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999998754
No 401
>PRK08356 hypothetical protein; Provisional
Probab=95.17 E-value=0.021 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~ 225 (292)
..+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999994
No 402
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.15 E-value=0.044 Score=47.99 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCCCccccchhHHH---HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc
Q 040979 179 DLDGFVGLNSRIED---LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG 234 (292)
Q Consensus 179 ~~~~~~gr~~~~~~---l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 234 (292)
.+..|+|.+...+. +.+++....-..+.+.+-|++|.|||+||-++.+++...-+.
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPF 94 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPF 94 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCc
Confidence 45678998766554 455665544457889999999999999999999998766443
No 403
>PRK01184 hypothetical protein; Provisional
Probab=95.15 E-value=0.019 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=18.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+|+|+|++|+||||+|+ ++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 478999999999999987 4443
No 404
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.031 Score=53.34 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
...+.+-++|++|+|||.||+++++....+|-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 34668999999999999999999997655553
No 405
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.13 E-value=0.019 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.|.|++|+||||+|+.++++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999875
No 406
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.13 E-value=0.028 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceE
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKC 236 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~ 236 (292)
+.-+|+|+|..|+|||||+..+..+++..+...+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ 37 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSERFSVGY 37 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEEE
Confidence 3568999999999999999999998876644433
No 407
>PRK12338 hypothetical protein; Provisional
Probab=95.13 E-value=0.021 Score=51.00 Aligned_cols=25 Identities=44% Similarity=0.448 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|.+|+||||+|+.++.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4789999999999999999999874
No 408
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.13 E-value=0.11 Score=46.84 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++|....+..+.+.+..-......|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 3566666777666655333345668999999999999999998753
No 409
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.038 Score=50.56 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 177 LTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 177 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|....+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334567899988888888877643 224568899999999999999999864
No 410
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.12 E-value=0.04 Score=45.14 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++.+.|.+|.||||+|+.+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999998764
No 411
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.09 E-value=0.043 Score=47.88 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|+|.|-||+||||++..++..+...
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~ 29 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKL 29 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 678888999999999999998876543
No 412
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.09 E-value=0.031 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+|+|.|.+|.||||+++.+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887653
No 413
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.09 E-value=0.026 Score=50.97 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCCCCccccchhHHHHHH-hhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKS-LLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~-~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.+...++|.+..+..+.- ++.. +..-+.+.|.+|+||||+|+.+..-+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34455678898877776553 3322 23458899999999999999998754
No 414
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.08 E-value=0.056 Score=49.26 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=29.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH--hCCCCceEEEe
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI--SGDFQGKCFMR 239 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~--~~~f~~~~~~~ 239 (292)
.++.|.|.+|+|||.||-.++.++ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999988 55566666665
No 415
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.06 E-value=0.1 Score=48.93 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|.|..|+|||||++.+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 446789999999999999999888754
No 416
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.06 E-value=0.019 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.-.+.|+|+|.+|+|||||++.+++..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999999864
No 417
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.05 E-value=0.028 Score=49.24 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=22.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
++|+|.|-||+||||++..++..+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 57888899999999999998886544
No 418
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=95.04 E-value=0.046 Score=49.78 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
....+.|-|++|+||||+|-.+.+.++++.+....-
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v~YIS 44 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKDHGNVMYIS 44 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhccCCeEEEE
Confidence 457889999999999999999999888877654433
No 419
>PLN02165 adenylate isopentenyltransferase
Probab=95.04 E-value=0.021 Score=51.18 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++.|+|+.|+||||||..++..+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 3456899999999999999999998754
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.19 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++++|..|+||||+...++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988875
No 421
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=95.04 E-value=0.03 Score=48.40 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=25.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
+.|+|+|-|||||||.+..+.--+...-..+.-+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~i 34 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQI 34 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEe
Confidence 4689999999999999999888766554444444
No 422
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.03 E-value=0.033 Score=50.27 Aligned_cols=49 Identities=24% Similarity=0.147 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCc
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQG 234 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~ 234 (292)
.++|.+..+..+...+.. .+.+-+.|.+|+|||+||+.++..+...|-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 25 VVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred eeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 377877666665444432 3568899999999999999999987655543
No 423
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.031 Score=55.24 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=39.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.+...+..+ .-.....++|+.|+||||+|+.++..+
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34556889988888888877632 235567899999999999999999864
No 424
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.98 E-value=0.076 Score=49.77 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||.+.+....
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999998888754
No 425
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.98 E-value=0.12 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..-++|.|-+|+|||||+..+.++..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999888653
No 426
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.96 E-value=0.052 Score=51.73 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=39.2
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..+.++.++|..+=....++.|.|.+|+|||||+..++.....+=+.++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455677777655566889999999999999999999987655545555554
No 427
>PLN02796 D-glycerate 3-kinase
Probab=94.95 E-value=0.024 Score=51.07 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..-+|+|.|..|+|||||++.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678999999999999999999987654
No 428
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.95 E-value=0.13 Score=44.60 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEeccccccccccHHHHHHHHHHHHhc
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDESNKKGVVHVRDEVICEVLE 263 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 263 (292)
...|.+++. +-....++.|-|.+|+|||++|..++..+..+- ..+.+++ -.-+..++...++....+
T Consensus 6 ~~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 6 FPALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLSG 73 (259)
T ss_dssp THHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHHT
T ss_pred hHHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhhc
Confidence 345555553 223456888999999999999999999765542 4445543 234555666666666643
No 429
>PRK02496 adk adenylate kinase; Provisional
Probab=94.93 E-value=0.024 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.|.|++|+||||+|+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999998865
No 430
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.037 Score=53.59 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=40.3
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899998888888888632 235678899999999999999999865
No 431
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.93 E-value=0.043 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+|++.|-||+||||++..++..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh
Confidence 4778899999999999998886543
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.92 E-value=0.039 Score=44.30 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=26.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.+++|.+.+. + +++.++|.+|+|||||...+..
T Consensus 25 g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 25 GIEELKELLK----G-KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp THHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHT
T ss_pred CHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHh
Confidence 4556666665 2 7899999999999999998876
No 433
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.92 E-value=0.03 Score=50.78 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=35.8
Q ss_pred CCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 177 LTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 177 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+....++|.+..+..+...+. +....-+.|.|..|+||||+|+.+++-
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3455678999877666654332 334455669999999999999999874
No 434
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.91 E-value=0.02 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 468999999999999999988864
No 435
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.90 E-value=0.081 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|.|..|+|||||.+.+....
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999998887654
No 436
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.90 E-value=0.037 Score=51.31 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHhhh-------h---cC--C----CeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLR-------L---EL--H----DVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~-------~---~~--~----~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..++|.+..++.+...+. . .. . ....+.++|++|+|||+||+.++..+...|
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 357888877777654441 1 00 1 135789999999999999999998764333
No 437
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.90 E-value=0.023 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEcCCcccHHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 438
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.025 Score=49.43 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=36.2
Q ss_pred CCccccchhHHHHHHhhhhc-----------CCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-----------LHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.++=|.+.+++++.+.+... -....=|.++|.+|+|||-||++|+|+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 34557888888888766421 123566889999999999999999985
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.89 E-value=0.025 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998874
No 440
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.14 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++++++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999998765
No 441
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.033 Score=55.26 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++||+.+++.+...|..... .--.++|-+|+|||+++..++.++..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--NNPvLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--NNPVLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--CCCeEecCCCCCHHHHHHHHHHHHhc
Confidence 4589999999999998873221 12246799999999999999998643
No 442
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.86 E-value=0.043 Score=45.78 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.++|.|..|.|||||.+.+.+.+...+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~ 29 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKY 29 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 689999999999999999998776543
No 443
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.85 E-value=0.025 Score=42.48 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEcCCcccHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~ 226 (292)
|+|.|++|+|||||...+..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999997
No 444
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.85 E-value=0.091 Score=49.41 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=48.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC--CCCc-eEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c--
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG--DFQG-KCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I-- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~-- 273 (292)
..-++|.|-.|+|||||+..+.++... .+.. ++.+.-++ .......++.++++..-..... ...+.. .
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iG--ERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMG--ITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEcc--ccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 456899999999999999999986432 1222 22222111 2245566666666533211111 111111 1
Q ss_pred ------HHHHHHHhC---CceEEEEEeC
Q 040979 274 ------PPRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 274 ------~~~l~~~L~---~kr~LlVLDD 292 (292)
...+.++++ ++++||++||
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~Ds 246 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTD 246 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcC
Confidence 222556665 5889999997
No 445
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.83 E-value=0.071 Score=43.38 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh-CCCCceEEEeccccccc
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS-GDFQGKCFMRNVRDESN 246 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~ 246 (292)
...+-+.|+.|+|||.||+.+++.+. ......+-+ ++...+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhcccc
Confidence 46788999999999999999999886 444444444 3433333
No 446
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.021 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..=|.+||++|+|||-||++++++-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa 569 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA 569 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc
Confidence 4558899999999999999999864
No 447
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.81 E-value=0.031 Score=47.36 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 448
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.78 E-value=0.025 Score=44.75 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEcCCcccHHHHHHHHHHHH
Q 040979 209 IWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 209 I~G~gGiGKTtLa~~v~~~~ 228 (292)
|.|++|+||||+|+.++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 449
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.77 E-value=0.022 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-|.++|++|+|||||+..+.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999999874
No 450
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.035 Score=53.45 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHhhh-----------hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 182 GFVGLNSRIEDLKSLLR-----------LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~-----------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
++=|.+..+.+|...+. .+-+..+-|..+|++|+|||++|++++++..-+|=
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 34456666666664332 23356788999999999999999999998666663
No 451
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.76 E-value=0.026 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.|.++|.+|+|||||...+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999876
No 452
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.76 E-value=0.041 Score=47.87 Aligned_cols=33 Identities=36% Similarity=0.599 Sum_probs=25.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
++|+|.|-||+||||++..++..+... . .+.+.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~-G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSND-H-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC-C-EEEEE
Confidence 578888999999999999999976653 2 44443
No 453
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.75 E-value=0.06 Score=47.00 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=34.6
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
+.-.....+.+.++|...-.....+.|.|..|.||||++..+.+.+...
T Consensus 106 l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 106 LGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 3333334455666665433456899999999999999999999875544
No 454
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.73 E-value=0.051 Score=45.48 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.6
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH-H-hCCCCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ-I-SGDFQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~-~-~~~f~~~~~~~ 239 (292)
.+.....+.|. ...++.+.|++|+|||.||.+.+-+ + ...|+..++..
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34444444444 3458999999999999999988864 3 35677777765
No 455
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.73 E-value=0.051 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||.+.+....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC
Confidence 45688999999999999999888654
No 456
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.73 E-value=0.039 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=21.8
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
|+++|-||+||||++..++..+...
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~ 27 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARR 27 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 7899999999999999998876543
No 457
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.73 E-value=0.13 Score=48.16 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=45.2
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh-CCCCceEEEeccccccccccHHHHHHHHHHH
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS-GDFQGKCFMRNVRDESNKKGVVHVRDEVICE 260 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~ 260 (292)
..|.......|.+++. +-....++.|-|.+|+|||++|..++.... .+=..++|++ -.-+...+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHH
Confidence 4455556666776665 445567899999999999999999997654 2222344443 123445555555544
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.71 E-value=0.059 Score=41.27 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|.+.|-=|.||||+++.++..+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999854
No 459
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.68 E-value=0.084 Score=50.22 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=30.2
Q ss_pred eEEEEEEcCCcccHHHHHH-HHHHHHhCCCCce-EEEecccccc-ccccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIAS-VVFHQISGDFQGK-CFMRNVRDES-NKKGVVHVRDEVIC 259 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~-~v~~~~~~~f~~~-~~~~~~~~~~-~~~~~~~~~~~il~ 259 (292)
..-++|.|-.|+|||+||. .+.++. .-+.. ++.. +. .......+.+.+..
T Consensus 162 GQr~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~----IGer~~ev~e~~~~~~~ 214 (502)
T PRK09281 162 GQRELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVA----IGQKASTVAQVVRKLEE 214 (502)
T ss_pred CcEEEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEE----ecCChHHHHHHHHHHhh
Confidence 4578999999999999954 455543 23443 3332 22 23455566555554
No 460
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.038 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++.|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999877765
No 461
>PRK14528 adenylate kinase; Provisional
Probab=94.68 E-value=0.034 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998764
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.68 E-value=0.03 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||++.++..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999998864
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.68 E-value=0.028 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||++.++..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998764
No 464
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.67 E-value=0.062 Score=47.82 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=22.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+.|+|..|.||||+++++.+.+..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356779999999999999999987644
No 465
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.05 Score=53.26 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++|.+.-++.|..++..+. -...+.++|..|+||||+|+.++..+-
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc
Confidence 44568898888888888776432 235678999999999999999999753
No 466
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.24 Score=50.02 Aligned_cols=100 Identities=10% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCccccchhHHHHHHhhhh---c--C-CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRL---E--L-HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~---~--~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
..++|.+..+..+.+.+.. + + .+...+.+.|+.|+|||-||++++..+.+..+.-+-+. +.+.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhh
Confidence 3566777777777666542 1 1 14567888999999999999999998866655544443 22222
Q ss_pred HHHHHHHhccccCCCCCCcHHHHHHHhCCceEEEE-EeC
Q 040979 255 DEVICEVLEENLKIGTSIIPPRIQKRLQLMKVLIV-LDD 292 (292)
Q Consensus 255 ~~il~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlV-LDD 292 (292)
+ ..++.+..+...+...-..|.+.++.++|-+| |||
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfde 668 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEE 668 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEec
Confidence 2 34444444444444445578888888877444 443
No 467
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.58 E-value=0.094 Score=48.09 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=58.7
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHHHhcccc--
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL-- 266 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 266 (292)
.++.|..+|..+ ...-+||..-+|+|||||...+++.- .++..+.-- + -.....+.+++++.+..-+....
T Consensus 150 GVRaIDgllT~G--~GQRiGIFAgsGVGKStLLgMiar~t--~aDv~ViaL-I--GERGREVrEFIE~~Lg~egl~rsVi 222 (441)
T COG1157 150 GVRAIDGLLTCG--KGQRIGIFAGSGVGKSTLLGMIARNT--EADVNVIAL-I--GERGREVREFIEKDLGEEGLKRSVV 222 (441)
T ss_pred cceeeecccccc--cCceeEEEecCCCcHHHHHHHHhccc--cCCEEEEEE-e--eccchhHHHHHHHhcchhhccceEE
Confidence 344555555532 34579999999999999999998753 445433322 0 24466778888777766644332
Q ss_pred CC--CCCC---------cHHHHHHHhC--CceEEEEEe
Q 040979 267 KI--GTSI---------IPPRIQKRLQ--LMKVLIVLD 291 (292)
Q Consensus 267 ~~--~~~~---------~~~~l~~~L~--~kr~LlVLD 291 (292)
-. .+.. ....+.++.+ ++++||++|
T Consensus 223 VvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mD 260 (441)
T COG1157 223 VVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMD 260 (441)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 01 1111 1233455654 489999999
No 468
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.054 Score=52.71 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.+.-++.|...+..+ .-...+.++|..|+||||+|+.+++.+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567999998888888877633 224567899999999999999999864
No 469
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.58 E-value=0.073 Score=49.62 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=32.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVICE 260 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~~ 260 (292)
....++|.|..|.|||||++.++...... ...+... -.......++..+.+..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~i----Gerg~ev~e~~~~~l~~ 207 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLV----GERGREVKDFIRKELGE 207 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeC----CCCcccHHHHHHHHhhh
Confidence 35678999999999999999888754322 1222221 12235555665555544
No 470
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.57 E-value=0.055 Score=45.97 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=23.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+.++|.|+.|.|||++++.+.+++.
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999875
No 471
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.031 Score=47.74 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.....++|.|++|+|||||.+.++-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999885
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.57 E-value=0.054 Score=48.98 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++|.+..+..+.-.+- +....-+.|.|..|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~--~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI--DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 457888877666532222 2234457799999999999999998743
No 473
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.56 E-value=0.1 Score=48.86 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|.|..|+|||||++.++...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999887643
No 474
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.55 E-value=0.047 Score=49.23 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..++|....+..+.+.+..-......|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35889888888887777643344567889999999999999999864
No 475
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.083 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....++|+|..|+|||||++.+...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999888754
No 476
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.55 E-value=0.079 Score=51.13 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.6
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44578999988888887776433344567899999999999999999864
No 477
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.042 Score=43.55 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.-++.|.|.+|.||||+++++.+++.-.|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 34889999999999999999999887555
No 478
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.54 E-value=0.031 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
+++|.|..|+|||||++.+...+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4899999999999999999976543
No 479
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.54 E-value=0.033 Score=45.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||.+.+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998863
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.53 E-value=0.036 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..|+|+|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999998875
No 481
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.033 Score=50.55 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+.|.+..++-|.+.+-. .....+-|.++|++|+|||-||++|+.+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3456666555555543321 123578899999999999999999998654
No 482
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.52 E-value=0.032 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||.+.++..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998864
No 483
>PLN02772 guanylate kinase
Probab=94.51 E-value=0.11 Score=47.74 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..+++.|+|++|+||+||++.+..+....|
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~ 163 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMF 163 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 467999999999999999999987643334
No 484
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.51 E-value=0.11 Score=48.94 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=30.9
Q ss_pred eEEEEEEcCCcccHHHHHH-HHHHHHhCCCCceEEEeccccccccccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIAS-VVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~-~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
..-++|.|-.|+|||+||. .+.++. .-+..|.+.-++ .+.....++.+.+..
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IG--er~rev~e~~~~l~~ 193 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIG--QKASSVAQVVTTLQE 193 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEec--CCchHHHHHHHHhhc
Confidence 4568999999999999965 455542 234342332121 223455666666554
No 485
>PRK05748 replicative DNA helicase; Provisional
Probab=94.50 E-value=0.14 Score=48.36 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=44.2
Q ss_pred ccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEeccccccccccHHHHHHHHHHH
Q 040979 183 FVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDESNKKGVVHVRDEVICE 260 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~il~~ 260 (292)
..|.......|.+++. +-....++.|-|.+|+|||++|..++.....+. ..+.+++ -.-+..++...++..
T Consensus 183 ~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS------lEms~~~l~~R~l~~ 254 (448)
T PRK05748 183 ITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS------LEMGAESLVMRMLCA 254 (448)
T ss_pred CCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 3444555556666554 445567899999999999999999988754332 2333443 223444555555543
No 486
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.46 E-value=0.062 Score=51.08 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+-|.++|++|+|||.+|++++++....
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345778999999999999999999976433
No 487
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.45 E-value=0.17 Score=47.95 Aligned_cols=83 Identities=23% Similarity=0.144 Sum_probs=46.8
Q ss_pred eEEEEEEcCCcccHHHHH-HHHHHHHhCCCCc-eEEEeccccccc-cccHHHHHHHHHHHHhcccc----CCCCCC-c--
Q 040979 204 VRVIGIWGMGGIGKTTIA-SVVFHQISGDFQG-KCFMRNVRDESN-KKGVVHVRDEVICEVLEENL----KIGTSI-I-- 273 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa-~~v~~~~~~~f~~-~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~~~----~~~~~~-~-- 273 (292)
..-++|.|-.|+|||||| ..+.++. .-+. ++++. +.+ .....++.+.+...=..... ...+.. .
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~----IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCA----IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEE----eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 456899999999999997 4677763 2343 34433 322 34556666666543211111 111111 1
Q ss_pred ------HHHHHHHh--CCceEEEEEeC
Q 040979 274 ------PPRIQKRL--QLMKVLIVLDD 292 (292)
Q Consensus 274 ------~~~l~~~L--~~kr~LlVLDD 292 (292)
...+.+++ +++.+|||+||
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~Dd 262 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDD 262 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 11233444 56899999997
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.44 E-value=0.17 Score=44.31 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+...+.++|.+|+||||++..+...+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 347899999999999999998887654
No 489
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.42 E-value=0.065 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|.|..|+|||||.+.+....
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCC
Confidence 45679999999999999998888653
No 490
>PRK06851 hypothetical protein; Provisional
Probab=94.42 E-value=0.039 Score=50.36 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=29.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh-CCCCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS-GDFQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~~~ 239 (292)
-+.+.|.|.+|+|||||++.++.... ..+...++.|
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 57899999999999999999999753 4466555555
No 491
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.42 E-value=0.04 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+-+|.|.|.+|+||||+|..+++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999876
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.037 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||++.++-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 493
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.036 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998863
No 494
>PRK06851 hypothetical protein; Provisional
Probab=94.38 E-value=0.068 Score=48.78 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC-CCCceEEEe
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG-DFQGKCFMR 239 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~f~~~~~~~ 239 (292)
..+++.|.|.+|+|||||.+.+.+.+.. .|+...+.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 3578999999999999999999997754 466666665
No 495
>PRK07429 phosphoribulokinase; Provisional
Probab=94.38 E-value=0.067 Score=48.19 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+-+|+|.|.+|.||||+++.+...+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~ 34 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGE 34 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhcc
Confidence 45679999999999999999999987653
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.38 E-value=0.037 Score=46.42 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....++.|+|++|.|||||.+.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567999999999999999998764
No 497
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.37 E-value=0.18 Score=44.25 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=57.1
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
...|++-..- +.+...+.......+...++|+.|+|||+-++.+++.. + ..|+. +.+..+....++..+..
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p-~~~l~---~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----P-NALLI---EADPSYTALVLILIICA 141 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----c-cceee---cCChhhHHHHHHHHHHH
Confidence 3446655432 22333444333345588999999999999999988752 2 34443 14555666666666655
Q ss_pred HHhccccCCCCCCcHHHHHHHhCCceEEEEEe
Q 040979 260 EVLEENLKIGTSIIPPRIQKRLQLMKVLIVLD 291 (292)
Q Consensus 260 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD 291 (292)
........... +....+..+|++..=+|+.|
T Consensus 142 ~~~~~~~~~~~-d~~~~~~~~l~~~~~~iivD 172 (297)
T COG2842 142 AAFGATDGTIN-DLTERLMIRLRDTVRLIIVD 172 (297)
T ss_pred HHhcccchhHH-HHHHHHHHHHccCcceeeee
Confidence 54433221111 14555556666655555555
No 498
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.36 E-value=0.047 Score=46.53 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=26.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCF 237 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~ 237 (292)
++++|+|..|+|||||+..+..+++.+ +...+.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 579999999999999999999987654 444333
No 499
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.04 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998863
No 500
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.33 E-value=0.069 Score=47.41 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.|.|-||+||||++..++..+..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~ 30 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE 30 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3578888899999999999988875543
Done!