Query 040979
Match_columns 292
No_of_seqs 218 out of 2162
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 03:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2.2E-44 7.7E-49 290.4 6.8 164 1-173 8-172 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1E-43 3.4E-48 291.1 6.5 165 1-172 35-201 (204)
3 3h16_A TIR protein; bacteria T 100.0 5.1E-30 1.8E-34 204.9 2.7 115 1-116 20-134 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 1.9E-27 6.6E-32 187.6 -0.9 103 1-105 10-114 (146)
5 2js7_A Myeloid differentiation 99.9 1.3E-24 4.5E-29 174.1 2.4 98 1-100 16-117 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 1.3E-24 4.3E-29 172.4 0.0 96 1-98 5-104 (149)
7 2j67_A TOLL like receptor 10; 99.9 2.9E-24 1E-28 174.7 2.0 98 1-100 35-136 (178)
8 1t3g_A X-linked interleukin-1 99.9 2.6E-23 9E-28 166.3 6.2 100 1-100 2-114 (159)
9 2a5y_B CED-4; apoptosis; HET: 99.7 4.6E-17 1.6E-21 155.1 12.7 105 184-292 131-251 (549)
10 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-17 6.6E-22 165.2 6.7 99 1-101 670-775 (844)
11 3sfz_A APAF-1, apoptotic pepti 99.5 1E-14 3.5E-19 150.3 9.9 114 175-292 118-244 (1249)
12 1vt4_I APAF-1 related killer D 99.5 1.5E-13 5.2E-18 136.4 11.6 106 182-292 129-252 (1221)
13 1z6t_A APAF-1, apoptotic prote 99.4 3E-13 1E-17 129.6 8.7 113 175-292 118-244 (591)
14 1w5s_A Origin recognition comp 99.0 2E-09 6.7E-14 98.1 12.0 110 179-292 20-146 (412)
15 2qby_B CDC6 homolog 3, cell di 98.9 5.2E-09 1.8E-13 94.5 11.4 109 180-292 19-141 (384)
16 2v1u_A Cell division control p 98.9 6.6E-09 2.2E-13 93.6 11.4 111 178-292 16-138 (387)
17 2qby_A CDC6 homolog 1, cell di 98.8 5.6E-09 1.9E-13 93.9 8.0 111 178-292 17-136 (386)
18 1fnn_A CDC6P, cell division co 98.8 5.1E-08 1.8E-12 87.9 12.6 110 179-292 15-133 (389)
19 2qen_A Walker-type ATPase; unk 98.8 1.1E-08 3.8E-13 90.8 7.3 49 176-228 7-55 (350)
20 2fna_A Conserved hypothetical 98.6 1.4E-07 4.8E-12 83.8 10.7 55 176-239 8-62 (357)
21 3te6_A Regulatory protein SIR3 98.6 2.6E-07 9.1E-12 81.4 9.7 104 183-292 22-140 (318)
22 1jbk_A CLPB protein; beta barr 98.4 1E-06 3.4E-11 70.8 9.7 49 179-229 20-68 (195)
23 2p65_A Hypothetical protein PF 98.4 1.4E-06 4.9E-11 69.7 10.0 50 179-230 20-69 (187)
24 1njg_A DNA polymerase III subu 98.4 2.1E-06 7E-11 71.5 10.5 52 179-231 21-72 (250)
25 2chg_A Replication factor C sm 98.3 1.5E-06 5E-11 71.5 8.3 51 178-230 14-64 (226)
26 1eiw_A Hypothetical protein MT 98.0 6.8E-06 2.3E-10 60.7 5.1 62 1-82 4-65 (111)
27 1sxj_B Activator 1 37 kDa subu 98.0 7.5E-06 2.6E-10 71.6 6.3 51 178-230 18-68 (323)
28 2w58_A DNAI, primosome compone 97.9 2.4E-05 8.3E-10 63.8 7.8 35 205-239 55-89 (202)
29 1iqp_A RFCS; clamp loader, ext 97.9 4.1E-05 1.4E-09 67.0 9.2 51 178-230 22-72 (327)
30 2z4s_A Chromosomal replication 97.9 3.8E-05 1.3E-09 70.8 9.2 29 204-232 130-158 (440)
31 3h4m_A Proteasome-activating n 97.9 7.5E-05 2.6E-09 64.3 10.4 53 178-230 14-77 (285)
32 3cf0_A Transitional endoplasmi 97.8 7.8E-05 2.7E-09 65.1 9.0 50 180-229 14-74 (301)
33 1l8q_A Chromosomal replication 97.8 0.0001 3.5E-09 64.8 9.5 28 203-230 36-63 (324)
34 2chq_A Replication factor C sm 97.7 4.2E-05 1.4E-09 66.7 6.4 49 179-229 15-63 (319)
35 3ec2_A DNA replication protein 97.7 7.9E-05 2.7E-09 59.7 7.3 27 203-229 37-63 (180)
36 1jr3_A DNA polymerase III subu 97.7 0.00013 4.6E-09 65.0 9.2 51 179-230 14-64 (373)
37 1sxj_A Activator 1 95 kDa subu 97.7 4.8E-05 1.6E-09 71.6 6.5 50 179-228 37-101 (516)
38 3eie_A Vacuolar protein sortin 97.7 8.7E-05 3E-09 65.4 7.8 53 179-231 16-78 (322)
39 3pxg_A Negative regulator of g 97.6 0.00022 7.5E-09 66.2 9.2 49 180-230 179-227 (468)
40 3n70_A Transport activator; si 97.6 5.9E-05 2E-09 58.4 4.5 47 182-228 2-48 (145)
41 3pvs_A Replication-associated 97.6 0.00027 9.3E-09 65.2 9.6 53 178-232 23-78 (447)
42 2qp9_X Vacuolar protein sortin 97.6 0.00012 4.1E-09 65.5 6.8 52 179-230 49-110 (355)
43 1d2n_A N-ethylmaleimide-sensit 97.6 0.00029 9.8E-09 60.3 8.9 48 182-229 34-89 (272)
44 3u61_B DNA polymerase accessor 97.5 0.00039 1.3E-08 61.0 10.0 51 178-229 23-73 (324)
45 1qvr_A CLPB protein; coiled co 97.5 0.00025 8.5E-09 70.7 9.3 49 179-229 168-216 (854)
46 3pfi_A Holliday junction ATP-d 97.5 7.2E-05 2.5E-09 66.1 4.9 53 179-231 27-82 (338)
47 3hu3_A Transitional endoplasmi 97.5 0.00016 5.4E-09 67.5 7.0 49 181-229 204-263 (489)
48 3b9p_A CG5977-PA, isoform A; A 97.5 7.4E-05 2.5E-09 64.8 4.3 52 178-229 18-79 (297)
49 4fcw_A Chaperone protein CLPB; 97.5 0.00066 2.3E-08 58.9 10.1 50 182-231 18-74 (311)
50 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00017 5.8E-09 61.0 5.9 52 180-231 5-66 (262)
51 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00037 1.3E-08 68.5 8.9 48 180-229 185-232 (758)
52 2zan_A Vacuolar protein sortin 97.4 0.00027 9.1E-09 65.2 7.4 51 178-228 131-191 (444)
53 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00011 3.9E-09 64.2 4.7 52 179-230 10-64 (324)
54 2c9o_A RUVB-like 1; hexameric 97.4 0.00067 2.3E-08 62.7 10.0 52 180-231 36-90 (456)
55 2cvh_A DNA repair and recombin 97.4 0.00039 1.3E-08 57.1 7.6 45 192-239 8-52 (220)
56 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0007 2.4E-08 59.6 9.2 49 180-228 11-69 (322)
57 1sxj_D Activator 1 41 kDa subu 97.3 0.00026 8.7E-09 62.6 6.0 50 178-229 34-83 (353)
58 3pxi_A Negative regulator of g 97.3 0.00062 2.1E-08 67.0 9.2 48 180-229 179-226 (758)
59 3bos_A Putative DNA replicatio 97.3 0.00049 1.7E-08 57.1 7.1 50 179-230 26-78 (242)
60 2qgz_A Helicase loader, putati 97.3 0.001 3.5E-08 58.2 9.2 48 192-239 139-188 (308)
61 3uk6_A RUVB-like 2; hexameric 97.2 0.00038 1.3E-08 62.0 6.2 52 180-231 43-97 (368)
62 2r62_A Cell division protease 97.2 0.00027 9.2E-09 60.2 4.8 53 179-231 9-71 (268)
63 3d8b_A Fidgetin-like protein 1 97.2 0.00027 9.1E-09 63.2 4.9 52 178-229 81-142 (357)
64 1lv7_A FTSH; alpha/beta domain 97.2 0.00043 1.5E-08 58.6 5.5 53 178-230 9-71 (257)
65 1in4_A RUVB, holliday junction 97.2 0.00036 1.2E-08 61.8 5.2 49 180-228 24-75 (334)
66 3syl_A Protein CBBX; photosynt 97.2 0.00041 1.4E-08 60.2 5.4 49 182-230 32-93 (309)
67 3co5_A Putative two-component 97.1 0.00011 3.7E-09 56.7 1.3 47 182-228 5-51 (143)
68 1ofh_A ATP-dependent HSL prote 97.1 0.0004 1.4E-08 60.1 4.8 50 181-230 15-76 (310)
69 1sxj_E Activator 1 40 kDa subu 97.0 0.00054 1.8E-08 60.7 4.8 48 179-228 12-60 (354)
70 3vfd_A Spastin; ATPase, microt 97.0 0.00079 2.7E-08 60.8 6.0 52 178-229 112-173 (389)
71 2bjv_A PSP operon transcriptio 97.0 0.00051 1.7E-08 58.4 4.4 49 181-229 6-54 (265)
72 1qhx_A CPT, protein (chloramph 96.9 0.00051 1.7E-08 54.5 3.2 25 205-229 4-28 (178)
73 4b4t_L 26S protease subunit RP 96.9 0.0011 3.7E-08 60.7 5.8 52 180-231 180-242 (437)
74 3cf2_A TER ATPase, transitiona 96.9 0.0028 9.7E-08 62.3 8.9 50 181-230 204-264 (806)
75 4b4t_K 26S protease regulatory 96.9 0.0011 3.8E-08 60.6 5.6 51 181-231 172-233 (428)
76 4b4t_M 26S protease regulatory 96.9 0.0011 3.8E-08 60.7 5.5 53 179-231 179-242 (434)
77 4b4t_J 26S protease regulatory 96.9 0.00091 3.1E-08 60.5 4.8 51 181-231 148-209 (405)
78 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00038 1.3E-08 61.1 2.1 24 204-227 123-146 (331)
79 1v5w_A DMC1, meiotic recombina 96.8 0.0039 1.3E-07 55.3 8.8 61 190-254 108-174 (343)
80 4b4t_H 26S protease regulatory 96.8 0.0014 4.7E-08 60.3 5.6 51 181-231 209-270 (467)
81 2zr9_A Protein RECA, recombina 96.8 0.0034 1.1E-07 55.9 7.9 50 190-239 46-96 (349)
82 1sxj_C Activator 1 40 kDa subu 96.8 0.0015 5.3E-08 57.6 5.7 48 180-229 24-71 (340)
83 3kb2_A SPBC2 prophage-derived 96.8 0.00087 3E-08 52.7 3.6 25 205-229 2-26 (173)
84 3hws_A ATP-dependent CLP prote 96.8 0.0011 3.8E-08 59.2 4.6 47 183-229 17-76 (363)
85 3hr8_A Protein RECA; alpha and 96.8 0.0041 1.4E-07 55.4 8.3 49 191-239 47-96 (356)
86 3hyn_A Putative signal transdu 96.8 0.0055 1.9E-07 48.6 7.9 82 9-95 27-116 (189)
87 1rz3_A Hypothetical protein rb 96.7 0.0017 5.8E-08 52.9 5.3 43 187-229 4-47 (201)
88 1ixz_A ATP-dependent metallopr 96.7 0.0017 6E-08 54.7 5.4 51 179-229 14-74 (254)
89 1xp8_A RECA protein, recombina 96.7 0.0038 1.3E-07 55.9 7.8 50 190-239 59-109 (366)
90 3vaa_A Shikimate kinase, SK; s 96.7 0.001 3.6E-08 54.0 3.8 27 203-229 24-50 (199)
91 1ojl_A Transcriptional regulat 96.7 0.0013 4.3E-08 57.5 4.5 47 182-228 3-49 (304)
92 3c8u_A Fructokinase; YP_612366 96.7 0.0018 6.1E-08 53.0 5.0 29 201-229 19-47 (208)
93 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 52.9 3.6 26 204-229 5-30 (185)
94 3t15_A Ribulose bisphosphate c 96.6 0.0014 4.8E-08 56.8 4.1 30 202-231 34-63 (293)
95 1iy2_A ATP-dependent metallopr 96.6 0.0024 8.2E-08 54.7 5.3 51 179-229 38-98 (278)
96 4b4t_I 26S protease regulatory 96.6 0.0024 8.3E-08 58.1 5.4 52 180-231 181-243 (437)
97 3lw7_A Adenylate kinase relate 96.5 0.0013 4.4E-08 51.6 3.0 22 205-227 2-23 (179)
98 1nks_A Adenylate kinase; therm 96.5 0.003 1E-07 50.4 5.3 26 205-230 2-27 (194)
99 1vma_A Cell division protein F 96.5 0.013 4.5E-07 51.0 9.7 29 203-231 103-131 (306)
100 1zuh_A Shikimate kinase; alpha 96.5 0.0017 5.8E-08 51.0 3.6 27 203-229 6-32 (168)
101 2rhm_A Putative kinase; P-loop 96.5 0.0022 7.6E-08 51.3 4.4 26 203-228 4-29 (193)
102 2r44_A Uncharacterized protein 96.5 0.0021 7.3E-08 56.4 4.6 46 181-230 27-72 (331)
103 1odf_A YGR205W, hypothetical 3 96.5 0.0032 1.1E-07 54.6 5.6 29 201-229 28-56 (290)
104 3uie_A Adenylyl-sulfate kinase 96.5 0.0021 7.2E-08 52.2 4.2 28 202-229 23-50 (200)
105 1zp6_A Hypothetical protein AT 96.5 0.0016 5.6E-08 52.1 3.5 25 203-227 8-32 (191)
106 1ly1_A Polynucleotide kinase; 96.5 0.0018 6.1E-08 51.2 3.6 22 205-226 3-24 (181)
107 1u94_A RECA protein, recombina 96.5 0.0058 2E-07 54.5 7.3 50 190-239 48-98 (356)
108 1ypw_A Transitional endoplasmi 96.5 0.0021 7.1E-08 63.6 4.8 51 180-230 203-264 (806)
109 2ce7_A Cell division protein F 96.4 0.0038 1.3E-07 57.9 6.0 52 180-231 15-76 (476)
110 3io5_A Recombination and repai 96.4 0.0095 3.2E-07 52.1 8.1 48 191-239 12-65 (333)
111 3ice_A Transcription terminati 96.4 0.0066 2.2E-07 54.6 7.2 28 204-231 174-201 (422)
112 1kag_A SKI, shikimate kinase I 96.4 0.0015 5.3E-08 51.4 2.9 25 205-229 5-29 (173)
113 1g8p_A Magnesium-chelatase 38 96.4 0.0023 7.9E-08 56.4 4.2 50 178-229 21-70 (350)
114 1kgd_A CASK, peripheral plasma 96.4 0.0021 7.3E-08 51.3 3.5 26 204-229 5-30 (180)
115 1knq_A Gluconate kinase; ALFA/ 96.4 0.0028 9.7E-08 50.0 4.2 25 204-228 8-32 (175)
116 1um8_A ATP-dependent CLP prote 96.4 0.0034 1.2E-07 56.2 5.2 48 182-229 22-97 (376)
117 1kht_A Adenylate kinase; phosp 96.4 0.0023 8E-08 51.1 3.7 26 205-230 4-29 (192)
118 1ex7_A Guanylate kinase; subst 96.4 0.0012 4.1E-08 53.4 1.9 28 205-232 2-29 (186)
119 4eun_A Thermoresistant glucoki 96.3 0.0024 8.1E-08 51.9 3.7 26 203-228 28-53 (200)
120 2gno_A DNA polymerase III, gam 96.3 0.02 6.9E-07 49.8 9.8 41 186-228 2-42 (305)
121 2ze6_A Isopentenyl transferase 96.3 0.0026 8.9E-08 53.9 4.0 25 205-229 2-26 (253)
122 3iij_A Coilin-interacting nucl 96.3 0.0016 5.4E-08 51.9 2.5 25 204-228 11-35 (180)
123 2ga8_A Hypothetical 39.9 kDa p 96.3 0.003 1E-07 56.1 4.3 32 201-232 21-52 (359)
124 2jaq_A Deoxyguanosine kinase; 96.3 0.0027 9.2E-08 51.3 3.7 24 206-229 2-25 (205)
125 3t61_A Gluconokinase; PSI-biol 96.3 0.0022 7.4E-08 52.1 3.1 25 204-228 18-42 (202)
126 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.6E-08 53.5 3.9 28 202-229 20-47 (252)
127 2yvu_A Probable adenylyl-sulfa 96.3 0.0052 1.8E-07 49.1 5.3 28 203-230 12-39 (186)
128 3tlx_A Adenylate kinase 2; str 96.3 0.0052 1.8E-07 51.6 5.5 28 201-228 26-53 (243)
129 1tev_A UMP-CMP kinase; ploop, 96.3 0.0032 1.1E-07 50.4 3.9 25 204-228 3-27 (196)
130 2plr_A DTMP kinase, probable t 96.2 0.0058 2E-07 49.6 5.5 29 204-232 4-32 (213)
131 1via_A Shikimate kinase; struc 96.2 0.0024 8.2E-08 50.6 3.1 24 206-229 6-29 (175)
132 1y63_A LMAJ004144AAA protein; 96.2 0.0029 9.8E-08 50.7 3.6 24 204-227 10-33 (184)
133 3cm0_A Adenylate kinase; ATP-b 96.2 0.0037 1.3E-07 49.8 4.2 25 204-228 4-28 (186)
134 2b8t_A Thymidine kinase; deoxy 96.2 0.0013 4.6E-08 54.7 1.5 36 203-238 11-46 (223)
135 1ukz_A Uridylate kinase; trans 96.2 0.0038 1.3E-07 50.5 4.2 26 203-228 14-39 (203)
136 1nn5_A Similar to deoxythymidy 96.2 0.0048 1.6E-07 50.3 4.8 28 204-231 9-36 (215)
137 3bh0_A DNAB-like replicative h 96.2 0.017 5.8E-07 50.5 8.6 51 188-239 53-103 (315)
138 2pt5_A Shikimate kinase, SK; a 96.2 0.0036 1.2E-07 48.9 3.8 24 206-229 2-25 (168)
139 2c95_A Adenylate kinase 1; tra 96.2 0.0032 1.1E-07 50.5 3.6 25 204-228 9-33 (196)
140 1uf9_A TT1252 protein; P-loop, 96.2 0.0035 1.2E-07 50.6 3.8 26 202-227 6-31 (203)
141 2iyv_A Shikimate kinase, SK; t 96.2 0.0033 1.1E-07 50.1 3.6 24 206-229 4-27 (184)
142 1tue_A Replication protein E1; 96.2 0.0056 1.9E-07 50.1 4.9 39 190-229 45-83 (212)
143 1n0w_A DNA repair protein RAD5 96.2 0.01 3.4E-07 49.2 6.7 49 191-239 11-65 (243)
144 2dhr_A FTSH; AAA+ protein, hex 96.2 0.005 1.7E-07 57.4 5.3 51 179-229 29-89 (499)
145 3asz_A Uridine kinase; cytidin 96.1 0.0041 1.4E-07 50.7 4.1 28 202-229 4-31 (211)
146 2bdt_A BH3686; alpha-beta prot 96.1 0.0035 1.2E-07 50.2 3.6 23 205-227 3-25 (189)
147 2grj_A Dephospho-COA kinase; T 96.1 0.0042 1.4E-07 50.3 4.1 27 202-228 10-36 (192)
148 2z0h_A DTMP kinase, thymidylat 96.1 0.011 3.8E-07 47.3 6.6 25 206-230 2-26 (197)
149 2pez_A Bifunctional 3'-phospho 96.1 0.0043 1.5E-07 49.2 4.1 27 203-229 4-30 (179)
150 1cke_A CK, MSSA, protein (cyti 96.1 0.0036 1.2E-07 51.6 3.7 24 205-228 6-29 (227)
151 2qor_A Guanylate kinase; phosp 96.1 0.0027 9.3E-08 51.7 2.9 26 204-229 12-37 (204)
152 3tr0_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 50.8 3.5 25 204-228 7-31 (205)
153 1e6c_A Shikimate kinase; phosp 96.1 0.0028 9.6E-08 49.8 2.9 25 205-229 3-27 (173)
154 2kjq_A DNAA-related protein; s 96.1 0.0058 2E-07 47.3 4.7 27 203-229 35-61 (149)
155 1sky_E F1-ATPase, F1-ATP synth 96.1 0.017 6E-07 53.1 8.5 33 206-238 153-186 (473)
156 2vli_A Antibiotic resistance p 96.1 0.0025 8.4E-08 50.6 2.6 26 204-229 5-30 (183)
157 3tau_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 51.3 3.5 27 203-229 7-33 (208)
158 2bwj_A Adenylate kinase 5; pho 96.1 0.0037 1.3E-07 50.2 3.6 26 204-229 12-37 (199)
159 1qf9_A UMP/CMP kinase, protein 96.1 0.0041 1.4E-07 49.6 3.9 25 204-228 6-30 (194)
160 1xjc_A MOBB protein homolog; s 96.1 0.0061 2.1E-07 48.3 4.7 35 204-238 4-39 (169)
161 3a00_A Guanylate kinase, GMP k 96.1 0.0025 8.7E-08 51.1 2.6 25 205-229 2-26 (186)
162 2j41_A Guanylate kinase; GMP, 96.1 0.0036 1.2E-07 50.7 3.5 25 204-228 6-30 (207)
163 3fwy_A Light-independent proto 96.1 0.0066 2.3E-07 53.1 5.3 30 202-231 46-75 (314)
164 2if2_A Dephospho-COA kinase; a 96.1 0.0035 1.2E-07 50.9 3.3 21 206-226 3-23 (204)
165 2pbr_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 49.7 3.7 24 206-229 2-25 (195)
166 1aky_A Adenylate kinase; ATP:A 96.0 0.0043 1.5E-07 51.1 3.7 25 204-228 4-28 (220)
167 3kl4_A SRP54, signal recogniti 96.0 0.032 1.1E-06 51.0 9.7 29 203-231 96-124 (433)
168 2cdn_A Adenylate kinase; phosp 96.0 0.0047 1.6E-07 50.0 3.8 25 204-228 20-44 (201)
169 1gvn_B Zeta; postsegregational 96.0 0.0062 2.1E-07 52.6 4.8 26 203-228 32-57 (287)
170 4a74_A DNA repair and recombin 96.0 0.0042 1.4E-07 51.1 3.5 38 191-228 12-49 (231)
171 2qt1_A Nicotinamide riboside k 96.0 0.0046 1.6E-07 50.3 3.7 25 203-227 20-44 (207)
172 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.005 1.7E-07 52.3 3.9 26 204-229 4-29 (260)
173 1a5t_A Delta prime, HOLB; zinc 96.0 0.042 1.4E-06 48.3 10.0 39 190-229 11-49 (334)
174 2dr3_A UPF0273 protein PH0284; 95.9 0.006 2.1E-07 50.7 4.3 48 192-239 11-58 (247)
175 3l0o_A Transcription terminati 95.9 0.026 9E-07 50.6 8.4 27 204-230 175-201 (427)
176 1jjv_A Dephospho-COA kinase; P 95.9 0.0049 1.7E-07 50.0 3.5 22 205-226 3-24 (206)
177 2wwf_A Thymidilate kinase, put 95.9 0.0053 1.8E-07 49.9 3.6 28 204-231 10-37 (212)
178 2bbw_A Adenylate kinase 4, AK4 95.9 0.0053 1.8E-07 51.5 3.7 25 204-228 27-51 (246)
179 3dm5_A SRP54, signal recogniti 95.9 0.02 6.8E-07 52.4 7.7 29 203-231 99-127 (443)
180 1g41_A Heat shock protein HSLU 95.9 0.0078 2.7E-07 55.1 5.0 52 181-232 15-78 (444)
181 3fb4_A Adenylate kinase; psych 95.9 0.0057 1.9E-07 50.0 3.7 23 206-228 2-24 (216)
182 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0067 2.3E-07 49.8 4.2 38 192-229 11-48 (235)
183 2z43_A DNA repair and recombin 95.8 0.016 5.6E-07 50.7 6.9 60 191-254 94-159 (324)
184 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0064 2.2E-07 56.7 4.2 44 181-228 22-65 (500)
185 1ye8_A Protein THEP1, hypothet 95.8 0.0066 2.3E-07 48.5 3.7 24 206-229 2-25 (178)
186 4e22_A Cytidylate kinase; P-lo 95.8 0.0057 1.9E-07 51.7 3.5 25 203-227 26-50 (252)
187 1gtv_A TMK, thymidylate kinase 95.8 0.0039 1.3E-07 50.8 2.3 24 206-229 2-25 (214)
188 3ney_A 55 kDa erythrocyte memb 95.8 0.0058 2E-07 49.8 3.3 27 203-229 18-44 (197)
189 1qvr_A CLPB protein; coiled co 95.8 0.026 9E-07 56.1 8.7 49 182-230 559-614 (854)
190 2x8a_A Nuclear valosin-contain 95.8 0.0047 1.6E-07 53.0 2.9 49 181-229 10-69 (274)
191 2jeo_A Uridine-cytidine kinase 95.7 0.0081 2.8E-07 50.4 4.2 27 202-228 23-49 (245)
192 4gp7_A Metallophosphoesterase; 95.7 0.0055 1.9E-07 48.5 3.0 22 203-224 8-29 (171)
193 3dl0_A Adenylate kinase; phosp 95.7 0.0061 2.1E-07 49.9 3.3 23 206-228 2-24 (216)
194 1m7g_A Adenylylsulfate kinase; 95.7 0.0083 2.8E-07 49.0 4.2 27 203-229 24-50 (211)
195 1j8m_F SRP54, signal recogniti 95.7 0.079 2.7E-06 45.8 10.5 27 204-230 98-124 (297)
196 1cr0_A DNA primase/helicase; R 95.7 0.026 9E-07 48.5 7.5 37 202-238 33-70 (296)
197 1zd8_A GTP:AMP phosphotransfer 95.7 0.006 2.1E-07 50.5 3.2 25 204-228 7-31 (227)
198 3ake_A Cytidylate kinase; CMP 95.7 0.0079 2.7E-07 48.6 3.9 24 206-229 4-27 (208)
199 3be4_A Adenylate kinase; malar 95.7 0.006 2E-07 50.2 3.1 24 205-228 6-29 (217)
200 1zak_A Adenylate kinase; ATP:A 95.6 0.0061 2.1E-07 50.2 3.1 26 204-229 5-30 (222)
201 3nwj_A ATSK2; P loop, shikimat 95.6 0.005 1.7E-07 52.1 2.6 26 204-229 48-73 (250)
202 2p5t_B PEZT; postsegregational 95.6 0.0068 2.3E-07 51.2 3.5 27 203-229 31-57 (253)
203 3aez_A Pantothenate kinase; tr 95.6 0.0091 3.1E-07 52.2 4.3 28 202-229 88-115 (312)
204 1lvg_A Guanylate kinase, GMP k 95.6 0.0053 1.8E-07 49.8 2.6 25 204-228 4-28 (198)
205 2ffh_A Protein (FFH); SRP54, s 95.6 0.053 1.8E-06 49.4 9.4 29 203-231 97-125 (425)
206 3p32_A Probable GTPase RV1496/ 95.6 0.028 9.7E-07 49.9 7.5 30 201-230 76-105 (355)
207 4a1f_A DNAB helicase, replicat 95.6 0.034 1.2E-06 49.1 7.9 64 189-259 32-95 (338)
208 1znw_A Guanylate kinase, GMP k 95.6 0.007 2.4E-07 49.3 3.2 26 203-228 19-44 (207)
209 1htw_A HI0065; nucleotide-bind 95.6 0.015 5.2E-07 45.4 5.0 27 202-228 31-57 (158)
210 3zvl_A Bifunctional polynucleo 95.5 0.021 7.3E-07 51.9 6.6 27 202-228 256-282 (416)
211 3umf_A Adenylate kinase; rossm 95.5 0.011 3.7E-07 48.9 4.2 27 202-228 27-53 (217)
212 2wsm_A Hydrogenase expression/ 95.5 0.017 5.8E-07 47.1 5.4 41 189-231 17-57 (221)
213 1u0j_A DNA replication protein 95.5 0.014 4.8E-07 49.7 4.9 36 192-227 92-127 (267)
214 1vht_A Dephospho-COA kinase; s 95.5 0.01 3.4E-07 48.7 3.9 23 204-226 4-26 (218)
215 2f6r_A COA synthase, bifunctio 95.5 0.009 3.1E-07 51.4 3.7 24 203-226 74-97 (281)
216 3vr4_D V-type sodium ATPase su 95.5 0.029 1E-06 51.3 7.2 98 189-292 138-256 (465)
217 2v54_A DTMP kinase, thymidylat 95.5 0.0087 3E-07 48.3 3.4 25 204-228 4-28 (204)
218 3pxi_A Negative regulator of g 95.5 0.027 9.1E-07 55.3 7.5 48 181-228 491-545 (758)
219 1zu4_A FTSY; GTPase, signal re 95.5 0.027 9.2E-07 49.4 6.7 28 203-230 104-131 (320)
220 3e70_C DPA, signal recognition 95.5 0.023 7.8E-07 50.0 6.2 29 202-230 127-155 (328)
221 1rj9_A FTSY, signal recognitio 95.4 0.016 5.5E-07 50.4 5.2 28 203-230 101-128 (304)
222 2hf9_A Probable hydrogenase ni 95.4 0.03 1E-06 45.8 6.7 30 202-231 36-65 (226)
223 1e4v_A Adenylate kinase; trans 95.4 0.01 3.4E-07 48.6 3.6 23 206-228 2-24 (214)
224 1z6g_A Guanylate kinase; struc 95.4 0.0074 2.5E-07 49.8 2.8 26 203-228 22-47 (218)
225 2ehv_A Hypothetical protein PH 95.4 0.0051 1.8E-07 51.3 1.8 25 202-226 28-52 (251)
226 2q6t_A DNAB replication FORK h 95.4 0.033 1.1E-06 51.0 7.4 68 185-259 182-250 (444)
227 2zts_A Putative uncharacterize 95.4 0.009 3.1E-07 49.7 3.3 26 202-227 28-53 (251)
228 2xb4_A Adenylate kinase; ATP-b 95.4 0.011 3.7E-07 48.9 3.7 23 206-228 2-24 (223)
229 3d3q_A TRNA delta(2)-isopenten 95.4 0.01 3.6E-07 52.4 3.7 25 205-229 8-32 (340)
230 1ak2_A Adenylate kinase isoenz 95.3 0.012 4E-07 49.0 3.8 26 204-229 16-41 (233)
231 1s96_A Guanylate kinase, GMP k 95.3 0.01 3.4E-07 49.2 3.3 27 203-229 15-41 (219)
232 2ck3_D ATP synthase subunit be 95.3 0.078 2.7E-06 48.8 9.5 53 204-260 153-207 (482)
233 2r6a_A DNAB helicase, replicat 95.3 0.04 1.4E-06 50.6 7.7 54 185-239 185-239 (454)
234 4eaq_A DTMP kinase, thymidylat 95.3 0.035 1.2E-06 46.1 6.6 28 203-230 25-52 (229)
235 3r20_A Cytidylate kinase; stru 95.3 0.012 4.1E-07 49.2 3.7 25 204-228 9-33 (233)
236 3tqc_A Pantothenate kinase; bi 95.3 0.015 5.2E-07 51.0 4.5 28 202-229 90-117 (321)
237 1a7j_A Phosphoribulokinase; tr 95.3 0.0067 2.3E-07 52.5 2.1 27 203-229 4-30 (290)
238 1sq5_A Pantothenate kinase; P- 95.3 0.014 4.8E-07 50.8 4.2 28 202-229 78-105 (308)
239 2i1q_A DNA repair and recombin 95.2 0.034 1.2E-06 48.5 6.6 39 190-228 84-122 (322)
240 3m6a_A ATP-dependent protease 95.2 0.019 6.4E-07 54.2 5.2 49 182-230 82-134 (543)
241 3crm_A TRNA delta(2)-isopenten 95.2 0.012 4.2E-07 51.5 3.6 24 205-228 6-29 (323)
242 3bgw_A DNAB-like replicative h 95.2 0.042 1.5E-06 50.4 7.3 54 184-238 178-231 (444)
243 4edh_A DTMP kinase, thymidylat 95.1 0.06 2.1E-06 44.2 7.5 31 204-234 6-37 (213)
244 3end_A Light-independent proto 95.1 0.029 9.9E-07 48.5 5.9 30 202-231 39-68 (307)
245 1np6_A Molybdopterin-guanine d 95.1 0.014 4.8E-07 46.4 3.5 27 204-230 6-32 (174)
246 3b9q_A Chloroplast SRP recepto 95.1 0.023 7.8E-07 49.4 5.2 27 203-229 99-125 (302)
247 3lda_A DNA repair protein RAD5 95.1 0.039 1.3E-06 49.9 6.9 38 190-227 164-201 (400)
248 2eyu_A Twitching motility prot 95.1 0.02 6.8E-07 48.7 4.7 28 202-229 23-50 (261)
249 1fx0_B ATP synthase beta chain 95.1 0.058 2E-06 49.8 8.0 52 204-259 165-218 (498)
250 2px0_A Flagellar biosynthesis 95.1 0.013 4.6E-07 50.7 3.6 27 203-229 104-130 (296)
251 3lnc_A Guanylate kinase, GMP k 95.1 0.008 2.7E-07 49.8 2.0 26 203-228 26-52 (231)
252 1pzn_A RAD51, DNA repair and r 95.0 0.016 5.3E-07 51.5 3.9 37 192-228 119-155 (349)
253 2i3b_A HCR-ntpase, human cance 95.0 0.013 4.6E-07 47.2 3.2 23 206-228 3-25 (189)
254 3cmu_A Protein RECA, recombina 95.0 0.031 1.1E-06 60.0 6.6 49 191-239 1413-1462(2050)
255 1svm_A Large T antigen; AAA+ f 95.0 0.023 7.8E-07 51.0 5.0 30 199-228 164-193 (377)
256 1q3t_A Cytidylate kinase; nucl 95.0 0.017 5.7E-07 48.1 3.9 27 202-228 14-40 (236)
257 1ltq_A Polynucleotide kinase; 95.0 0.015 5E-07 50.2 3.6 23 205-227 3-25 (301)
258 1yrb_A ATP(GTP)binding protein 95.0 0.033 1.1E-06 46.7 5.8 26 204-229 14-39 (262)
259 2f1r_A Molybdopterin-guanine d 95.0 0.011 3.7E-07 47.0 2.5 26 205-230 3-28 (171)
260 1r6b_X CLPA protein; AAA+, N-t 95.0 0.019 6.4E-07 56.3 4.7 48 181-228 458-512 (758)
261 1cp2_A CP2, nitrogenase iron p 95.0 0.031 1.1E-06 47.2 5.5 27 205-231 2-28 (269)
262 3k1j_A LON protease, ATP-depen 95.0 0.011 3.7E-07 56.5 2.9 48 179-230 39-86 (604)
263 3kjh_A CO dehydrogenase/acetyl 94.8 0.034 1.2E-06 46.1 5.4 25 207-231 3-27 (254)
264 3io3_A DEHA2D07832P; chaperone 94.8 0.047 1.6E-06 48.4 6.4 28 202-229 16-43 (348)
265 3a8t_A Adenylate isopentenyltr 94.8 0.012 4.2E-07 51.8 2.5 25 204-228 40-64 (339)
266 2afh_E Nitrogenase iron protei 94.8 0.034 1.2E-06 47.6 5.3 28 204-231 2-29 (289)
267 1g8f_A Sulfate adenylyltransfe 94.8 0.03 1E-06 52.3 5.1 28 203-230 394-421 (511)
268 2og2_A Putative signal recogni 94.7 0.032 1.1E-06 49.7 5.1 27 203-229 156-182 (359)
269 2onk_A Molybdate/tungstate ABC 94.7 0.017 5.7E-07 48.5 3.1 25 202-227 23-47 (240)
270 3sr0_A Adenylate kinase; phosp 94.7 0.022 7.4E-07 46.7 3.7 23 206-228 2-24 (206)
271 1q57_A DNA primase/helicase; d 94.7 0.062 2.1E-06 50.0 7.3 48 191-239 230-278 (503)
272 3exa_A TRNA delta(2)-isopenten 94.7 0.017 5.9E-07 50.4 3.2 25 204-228 3-27 (322)
273 3tif_A Uncharacterized ABC tra 94.7 0.014 4.9E-07 48.7 2.7 25 202-226 29-53 (235)
274 2r8r_A Sensor protein; KDPD, P 94.7 0.06 2.1E-06 44.6 6.3 30 205-234 7-37 (228)
275 3foz_A TRNA delta(2)-isopenten 94.7 0.024 8.1E-07 49.4 4.0 26 203-228 9-34 (316)
276 3b85_A Phosphate starvation-in 94.7 0.015 5.2E-07 47.6 2.7 24 204-227 22-45 (208)
277 3upu_A ATP-dependent DNA helic 94.7 0.064 2.2E-06 49.3 7.2 27 205-231 46-72 (459)
278 2ocp_A DGK, deoxyguanosine kin 94.7 0.023 7.7E-07 47.4 3.8 26 204-229 2-27 (241)
279 1g5t_A COB(I)alamin adenosyltr 94.6 0.094 3.2E-06 42.4 7.2 35 204-238 28-62 (196)
280 3ug7_A Arsenical pump-driving 94.6 0.086 2.9E-06 46.7 7.6 31 201-231 23-53 (349)
281 2xxa_A Signal recognition part 94.6 0.039 1.3E-06 50.4 5.5 29 203-231 99-127 (433)
282 2pcj_A ABC transporter, lipopr 94.6 0.016 5.4E-07 48.1 2.6 24 203-226 29-52 (224)
283 1ls1_A Signal recognition part 94.6 0.039 1.3E-06 47.7 5.2 28 203-230 97-124 (295)
284 2v9p_A Replication protein E1; 94.6 0.031 1E-06 48.6 4.5 29 200-228 122-150 (305)
285 2qe7_A ATP synthase subunit al 94.6 0.054 1.9E-06 50.1 6.3 49 205-259 163-214 (502)
286 4dzz_A Plasmid partitioning pr 94.6 0.054 1.8E-06 43.5 5.7 34 205-238 2-36 (206)
287 1nlf_A Regulatory protein REPA 94.6 0.038 1.3E-06 47.1 5.0 28 203-230 29-56 (279)
288 3hjn_A DTMP kinase, thymidylat 94.5 0.079 2.7E-06 42.8 6.6 34 206-239 2-35 (197)
289 2cbz_A Multidrug resistance-as 94.5 0.017 5.9E-07 48.3 2.7 25 203-227 30-54 (237)
290 1mv5_A LMRA, multidrug resista 94.5 0.021 7.1E-07 48.0 3.1 25 202-226 26-50 (243)
291 1b0u_A Histidine permease; ABC 94.5 0.018 6.1E-07 49.0 2.6 26 202-227 30-55 (262)
292 3iqw_A Tail-anchored protein t 94.5 0.066 2.3E-06 47.2 6.4 37 202-238 14-50 (334)
293 2d2e_A SUFC protein; ABC-ATPas 94.4 0.023 7.7E-07 48.0 3.2 25 203-227 28-52 (250)
294 2yhs_A FTSY, cell division pro 94.4 0.04 1.4E-06 51.1 5.1 27 203-229 292-318 (503)
295 2p67_A LAO/AO transport system 94.4 0.076 2.6E-06 46.8 6.8 29 201-229 53-81 (341)
296 2axn_A 6-phosphofructo-2-kinas 94.4 0.044 1.5E-06 51.3 5.5 30 203-232 34-63 (520)
297 1ypw_A Transitional endoplasmi 94.4 0.022 7.6E-07 56.3 3.5 52 181-232 477-539 (806)
298 3ld9_A DTMP kinase, thymidylat 94.4 0.068 2.3E-06 44.2 5.9 35 202-236 19-55 (223)
299 2dyk_A GTP-binding protein; GT 94.4 0.03 1E-06 42.7 3.6 22 205-226 2-23 (161)
300 2zu0_C Probable ATP-dependent 94.4 0.023 8E-07 48.4 3.2 26 202-227 44-69 (267)
301 3lv8_A DTMP kinase, thymidylat 94.3 0.081 2.8E-06 44.2 6.4 36 204-239 27-63 (236)
302 2r9v_A ATP synthase subunit al 94.3 0.095 3.3E-06 48.6 7.3 62 190-259 163-227 (515)
303 4hlc_A DTMP kinase, thymidylat 94.3 0.092 3.1E-06 42.8 6.6 29 205-233 3-31 (205)
304 1oix_A RAS-related protein RAB 94.3 0.027 9.2E-07 45.0 3.3 24 204-227 29-52 (191)
305 3gfo_A Cobalt import ATP-bindi 94.3 0.02 7E-07 49.0 2.7 24 203-226 33-56 (275)
306 1g6h_A High-affinity branched- 94.3 0.021 7.2E-07 48.4 2.7 24 203-226 32-55 (257)
307 4g1u_C Hemin import ATP-bindin 94.3 0.021 7.1E-07 48.7 2.7 24 203-226 36-59 (266)
308 1ji0_A ABC transporter; ATP bi 94.3 0.021 7.3E-07 47.8 2.7 24 203-226 31-54 (240)
309 3cr8_A Sulfate adenylyltranfer 94.3 0.038 1.3E-06 52.1 4.7 28 203-230 368-395 (552)
310 2olj_A Amino acid ABC transpor 94.3 0.021 7.1E-07 48.6 2.6 26 202-227 48-73 (263)
311 2qm8_A GTPase/ATPase; G protei 94.3 0.092 3.1E-06 46.3 6.9 30 200-229 51-80 (337)
312 3eph_A TRNA isopentenyltransfe 94.3 0.031 1.1E-06 50.4 3.9 24 205-228 3-26 (409)
313 4tmk_A Protein (thymidylate ki 94.3 0.095 3.3E-06 43.0 6.6 34 205-238 4-38 (213)
314 3v9p_A DTMP kinase, thymidylat 94.2 0.063 2.2E-06 44.6 5.5 28 203-230 24-51 (227)
315 3zq6_A Putative arsenical pump 94.2 0.065 2.2E-06 46.9 5.8 28 204-231 14-41 (324)
316 2c61_A A-type ATP synthase non 94.2 0.086 2.9E-06 48.4 6.7 85 205-292 153-257 (469)
317 2j37_W Signal recognition part 94.2 0.074 2.5E-06 49.6 6.4 28 203-230 100-127 (504)
318 2pze_A Cystic fibrosis transme 94.2 0.023 7.9E-07 47.2 2.7 26 203-228 33-58 (229)
319 2ff7_A Alpha-hemolysin translo 94.2 0.023 7.9E-07 47.8 2.7 25 203-227 34-58 (247)
320 2ghi_A Transport protein; mult 94.2 0.023 7.7E-07 48.3 2.7 26 202-227 44-69 (260)
321 2f9l_A RAB11B, member RAS onco 94.2 0.029 9.8E-07 45.0 3.2 24 204-227 5-28 (199)
322 3fdi_A Uncharacterized protein 94.1 0.033 1.1E-06 45.3 3.5 25 205-229 7-31 (201)
323 1vpl_A ABC transporter, ATP-bi 94.1 0.023 7.8E-07 48.2 2.6 26 202-227 39-64 (256)
324 3gmt_A Adenylate kinase; ssgci 94.1 0.032 1.1E-06 46.5 3.5 25 204-228 8-32 (230)
325 2h92_A Cytidylate kinase; ross 94.1 0.026 8.9E-07 46.1 2.9 24 205-228 4-27 (219)
326 1z2a_A RAS-related protein RAB 94.1 0.041 1.4E-06 42.2 3.9 24 204-227 5-28 (168)
327 2ixe_A Antigen peptide transpo 94.1 0.024 8.1E-07 48.5 2.7 26 202-227 43-68 (271)
328 2vp4_A Deoxynucleoside kinase; 94.1 0.022 7.7E-07 47.2 2.5 26 202-227 18-43 (230)
329 2yz2_A Putative ABC transporte 94.1 0.024 8.3E-07 48.3 2.7 26 202-227 31-56 (266)
330 2ce2_X GTPase HRAS; signaling 94.1 0.031 1.1E-06 42.7 3.1 22 206-227 5-26 (166)
331 1sgw_A Putative ABC transporte 94.1 0.021 7E-07 47.1 2.1 25 203-227 34-58 (214)
332 2wji_A Ferrous iron transport 94.0 0.036 1.2E-06 43.0 3.5 22 205-226 4-25 (165)
333 2qi9_C Vitamin B12 import ATP- 94.0 0.027 9.1E-07 47.5 2.7 26 203-228 25-50 (249)
334 1tq4_A IIGP1, interferon-induc 93.9 0.039 1.3E-06 50.1 3.9 34 193-226 58-91 (413)
335 3sop_A Neuronal-specific septi 93.9 0.034 1.2E-06 47.4 3.4 22 206-227 4-25 (270)
336 1bif_A 6-phosphofructo-2-kinas 93.9 0.063 2.1E-06 49.5 5.3 29 204-232 39-67 (469)
337 2nq2_C Hypothetical ABC transp 93.9 0.029 9.8E-07 47.4 2.7 25 203-227 30-54 (253)
338 2qmh_A HPR kinase/phosphorylas 93.9 0.028 9.5E-07 45.7 2.5 25 204-228 34-58 (205)
339 2ihy_A ABC transporter, ATP-bi 93.9 0.028 9.5E-07 48.3 2.7 25 203-227 46-70 (279)
340 3fkq_A NTRC-like two-domain pr 93.9 0.067 2.3E-06 47.7 5.3 30 202-231 141-171 (373)
341 3cmw_A Protein RECA, recombina 93.8 0.088 3E-06 55.7 6.8 55 185-239 712-767 (1706)
342 2ck3_A ATP synthase subunit al 93.8 0.16 5.6E-06 47.0 7.9 64 190-259 150-222 (510)
343 2v3c_C SRP54, signal recogniti 93.8 0.028 9.7E-07 51.4 2.8 26 204-229 99-124 (432)
344 3con_A GTPase NRAS; structural 93.8 0.037 1.3E-06 43.8 3.2 23 205-227 22-44 (190)
345 4gzl_A RAS-related C3 botulinu 93.8 0.042 1.5E-06 44.3 3.6 24 203-226 29-52 (204)
346 3cmu_A Protein RECA, recombina 93.8 0.11 3.8E-06 55.8 7.4 56 184-239 362-418 (2050)
347 2zej_A Dardarin, leucine-rich 93.8 0.033 1.1E-06 44.0 2.8 21 206-226 4-24 (184)
348 3cwq_A Para family chromosome 93.8 0.11 3.9E-06 42.2 6.1 32 206-238 2-34 (209)
349 2wjg_A FEOB, ferrous iron tran 93.7 0.049 1.7E-06 42.9 3.8 23 204-226 7-29 (188)
350 3gqb_B V-type ATP synthase bet 93.7 0.11 3.7E-06 47.6 6.3 25 205-229 148-172 (464)
351 3ea0_A ATPase, para family; al 93.7 0.094 3.2E-06 43.3 5.6 29 203-231 3-32 (245)
352 1u8z_A RAS-related protein RAL 93.7 0.042 1.4E-06 42.1 3.2 24 204-227 4-27 (168)
353 2ged_A SR-beta, signal recogni 93.6 0.041 1.4E-06 43.6 3.1 25 203-227 47-71 (193)
354 1puj_A YLQF, conserved hypothe 93.6 1.3 4.4E-05 37.8 12.7 30 44-73 12-41 (282)
355 1c1y_A RAS-related protein RAP 93.6 0.044 1.5E-06 42.0 3.2 23 205-227 4-26 (167)
356 1nij_A Hypothetical protein YJ 93.6 0.044 1.5E-06 47.8 3.5 25 203-227 3-27 (318)
357 3nh6_A ATP-binding cassette SU 93.5 0.028 9.7E-07 48.9 2.1 25 202-226 78-102 (306)
358 2gk6_A Regulator of nonsense t 93.5 0.14 4.8E-06 49.0 7.2 48 187-239 183-230 (624)
359 2orw_A Thymidine kinase; TMTK, 93.5 0.074 2.5E-06 42.5 4.4 24 205-228 4-27 (184)
360 2pjz_A Hypothetical protein ST 93.5 0.036 1.2E-06 47.1 2.7 25 204-228 30-54 (263)
361 1z08_A RAS-related protein RAB 93.5 0.046 1.6E-06 42.1 3.1 24 204-227 6-29 (170)
362 3ch4_B Pmkase, phosphomevalona 93.5 0.072 2.5E-06 43.3 4.3 27 202-228 9-35 (202)
363 2ewv_A Twitching motility prot 93.5 0.066 2.3E-06 47.9 4.5 28 202-229 134-161 (372)
364 1kao_A RAP2A; GTP-binding prot 93.5 0.047 1.6E-06 41.7 3.1 23 205-227 4-26 (167)
365 3cmw_A Protein RECA, recombina 93.4 0.11 3.8E-06 55.0 6.6 54 186-239 364-418 (1706)
366 1lw7_A Transcriptional regulat 93.4 0.047 1.6E-06 48.6 3.4 25 204-228 170-194 (365)
367 4b3f_X DNA-binding protein smu 93.4 0.14 4.7E-06 49.3 6.9 60 188-257 193-253 (646)
368 1ek0_A Protein (GTP-binding pr 93.4 0.049 1.7E-06 41.8 3.2 22 206-227 5-26 (170)
369 1z0j_A RAB-22, RAS-related pro 93.4 0.049 1.7E-06 41.9 3.1 23 205-227 7-29 (170)
370 1x6v_B Bifunctional 3'-phospho 93.4 0.063 2.2E-06 51.3 4.4 27 203-229 51-77 (630)
371 1fx0_A ATP synthase alpha chai 93.4 0.085 2.9E-06 48.9 5.1 25 204-228 163-188 (507)
372 3kta_A Chromosome segregation 93.4 0.048 1.6E-06 43.0 3.1 21 206-226 28-48 (182)
373 1m7b_A RND3/RHOE small GTP-bin 93.3 0.048 1.6E-06 43.0 3.1 24 204-227 7-30 (184)
374 2nzj_A GTP-binding protein REM 93.3 0.067 2.3E-06 41.4 3.9 23 204-226 4-26 (175)
375 3fvq_A Fe(3+) IONS import ATP- 93.3 0.044 1.5E-06 48.8 3.1 25 202-226 28-52 (359)
376 1p5z_B DCK, deoxycytidine kina 93.3 0.022 7.6E-07 48.2 1.1 26 203-228 23-48 (263)
377 1m8p_A Sulfate adenylyltransfe 93.3 0.065 2.2E-06 50.8 4.3 27 203-229 395-421 (573)
378 3q85_A GTP-binding protein REM 93.3 0.049 1.7E-06 41.9 3.0 21 205-225 3-23 (169)
379 1r8s_A ADP-ribosylation factor 93.3 0.053 1.8E-06 41.5 3.2 21 207-227 3-23 (164)
380 2gks_A Bifunctional SAT/APS ki 93.3 0.097 3.3E-06 49.3 5.5 27 203-229 371-397 (546)
381 1nrj_B SR-beta, signal recogni 93.3 0.057 2E-06 43.7 3.5 25 203-227 11-35 (218)
382 3tui_C Methionine import ATP-b 93.3 0.047 1.6E-06 48.7 3.2 25 202-226 52-76 (366)
383 2bbs_A Cystic fibrosis transme 93.2 0.039 1.3E-06 47.6 2.6 26 202-227 62-87 (290)
384 2woo_A ATPase GET3; tail-ancho 93.2 0.15 5.2E-06 44.6 6.4 29 203-231 18-46 (329)
385 2fn4_A P23, RAS-related protei 93.2 0.076 2.6E-06 41.2 4.1 25 203-227 8-32 (181)
386 2gj8_A MNME, tRNA modification 93.2 0.049 1.7E-06 42.6 2.9 23 205-227 5-27 (172)
387 1r2q_A RAS-related protein RAB 93.2 0.055 1.9E-06 41.5 3.2 22 205-226 7-28 (170)
388 2www_A Methylmalonic aciduria 93.2 0.11 3.7E-06 46.0 5.4 26 203-228 73-98 (349)
389 2erx_A GTP-binding protein DI- 93.2 0.052 1.8E-06 41.8 3.0 22 205-226 4-25 (172)
390 3jvv_A Twitching mobility prot 93.2 0.079 2.7E-06 47.1 4.5 26 204-229 123-148 (356)
391 1z0f_A RAB14, member RAS oncog 93.2 0.056 1.9E-06 41.9 3.2 24 204-227 15-38 (179)
392 1wms_A RAB-9, RAB9, RAS-relate 93.1 0.055 1.9E-06 42.0 3.1 23 204-226 7-29 (177)
393 3q72_A GTP-binding protein RAD 93.1 0.048 1.6E-06 41.9 2.7 21 206-226 4-24 (166)
394 1ky3_A GTP-binding protein YPT 93.1 0.077 2.6E-06 41.2 3.9 24 203-226 7-30 (182)
395 1z47_A CYSA, putative ABC-tran 93.1 0.054 1.8E-06 48.2 3.2 24 203-226 40-63 (355)
396 3ihw_A Centg3; RAS, centaurin, 93.1 0.057 2E-06 42.7 3.1 23 204-226 20-42 (184)
397 2iwr_A Centaurin gamma 1; ANK 93.0 0.053 1.8E-06 42.2 2.9 24 204-227 7-30 (178)
398 2yyz_A Sugar ABC transporter, 93.0 0.053 1.8E-06 48.3 3.2 25 202-226 27-51 (359)
399 3ez2_A Plasmid partition prote 93.0 0.24 8.3E-06 44.4 7.6 28 202-229 106-134 (398)
400 3hdt_A Putative kinase; struct 93.0 0.065 2.2E-06 44.3 3.5 25 204-228 14-38 (223)
401 2it1_A 362AA long hypothetical 93.0 0.054 1.9E-06 48.3 3.2 25 202-226 27-51 (362)
402 2lkc_A Translation initiation 93.0 0.059 2E-06 41.9 3.1 24 203-226 7-30 (178)
403 3t1o_A Gliding protein MGLA; G 93.0 0.06 2.1E-06 42.5 3.2 24 204-227 14-37 (198)
404 3c5c_A RAS-like protein 12; GD 93.0 0.06 2.1E-06 42.7 3.1 24 204-227 21-44 (187)
405 1upt_A ARL1, ADP-ribosylation 93.0 0.062 2.1E-06 41.4 3.2 23 204-226 7-29 (171)
406 3kkq_A RAS-related protein M-R 92.9 0.062 2.1E-06 42.1 3.2 25 203-227 17-41 (183)
407 3rlf_A Maltose/maltodextrin im 92.9 0.055 1.9E-06 48.5 3.2 25 202-226 27-51 (381)
408 3k9g_A PF-32 protein; ssgcid, 92.9 0.15 5.1E-06 42.9 5.8 28 202-229 25-53 (267)
409 4dsu_A GTPase KRAS, isoform 2B 92.9 0.062 2.1E-06 42.1 3.1 23 205-227 5-27 (189)
410 2gza_A Type IV secretion syste 92.9 0.035 1.2E-06 49.5 1.8 26 203-228 174-199 (361)
411 2woj_A ATPase GET3; tail-ancho 92.9 0.2 6.9E-06 44.4 6.7 27 203-229 17-43 (354)
412 3cf2_A TER ATPase, transitiona 92.9 0.048 1.6E-06 53.7 2.8 48 181-228 477-535 (806)
413 1m2o_B GTP-binding protein SAR 92.9 0.061 2.1E-06 42.8 3.1 22 205-226 24-45 (190)
414 3bc1_A RAS-related protein RAB 92.9 0.064 2.2E-06 42.2 3.2 23 204-226 11-33 (195)
415 1v43_A Sugar-binding transport 92.9 0.058 2E-06 48.3 3.2 25 202-226 35-59 (372)
416 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.065 2.2E-06 41.9 3.2 22 205-226 6-27 (186)
417 1g16_A RAS-related protein SEC 92.8 0.087 3E-06 40.4 3.8 22 205-226 4-25 (170)
418 3igf_A ALL4481 protein; two-do 92.8 0.11 3.8E-06 46.4 5.0 34 205-238 3-36 (374)
419 3def_A T7I23.11 protein; chlor 92.8 0.14 4.8E-06 43.2 5.4 26 202-227 34-59 (262)
420 3d31_A Sulfate/molybdate ABC t 92.8 0.048 1.7E-06 48.3 2.6 25 202-226 24-48 (348)
421 1g29_1 MALK, maltose transport 92.8 0.061 2.1E-06 48.1 3.2 24 203-226 28-51 (372)
422 2a9k_A RAS-related protein RAL 92.8 0.066 2.3E-06 41.8 3.2 24 204-227 18-41 (187)
423 2oil_A CATX-8, RAS-related pro 92.8 0.066 2.2E-06 42.4 3.2 24 204-227 25-48 (193)
424 2bme_A RAB4A, RAS-related prot 92.8 0.064 2.2E-06 42.1 3.1 24 204-227 10-33 (186)
425 1p9r_A General secretion pathw 92.8 0.14 4.7E-06 46.6 5.6 29 202-230 165-193 (418)
426 3oaa_A ATP synthase subunit al 92.8 0.24 8E-06 45.9 7.1 64 188-259 148-214 (513)
427 1oxx_K GLCV, glucose, ABC tran 92.8 0.044 1.5E-06 48.7 2.2 25 202-226 29-53 (353)
428 2y8e_A RAB-protein 6, GH09086P 92.7 0.067 2.3E-06 41.5 3.1 22 205-226 15-36 (179)
429 3bwd_D RAC-like GTP-binding pr 92.7 0.069 2.4E-06 41.6 3.2 22 205-226 9-30 (182)
430 2efe_B Small GTP-binding prote 92.7 0.069 2.4E-06 41.6 3.1 23 204-226 12-34 (181)
431 1svi_A GTP-binding protein YSX 92.7 0.068 2.3E-06 42.3 3.1 24 203-226 22-45 (195)
432 2yv5_A YJEQ protein; hydrolase 92.7 0.086 2.9E-06 45.7 4.0 21 205-225 166-186 (302)
433 2hxs_A RAB-26, RAS-related pro 92.7 0.06 2E-06 41.8 2.7 23 204-226 6-28 (178)
434 3clv_A RAB5 protein, putative; 92.7 0.069 2.4E-06 42.2 3.1 24 204-227 7-30 (208)
435 2atv_A RERG, RAS-like estrogen 92.7 0.07 2.4E-06 42.5 3.1 24 204-227 28-51 (196)
436 3t5g_A GTP-binding protein RHE 92.6 0.07 2.4E-06 41.7 3.1 23 204-226 6-28 (181)
437 2g6b_A RAS-related protein RAB 92.6 0.072 2.5E-06 41.4 3.2 24 204-227 10-33 (180)
438 2cxx_A Probable GTP-binding pr 92.6 0.063 2.2E-06 42.2 2.8 21 206-226 3-23 (190)
439 3tw8_B RAS-related protein RAB 92.6 0.077 2.6E-06 41.2 3.3 24 203-226 8-31 (181)
440 1h65_A Chloroplast outer envel 92.6 0.15 5.1E-06 43.1 5.3 26 202-227 37-62 (270)
441 1fzq_A ADP-ribosylation factor 92.6 0.097 3.3E-06 41.2 3.9 25 202-226 14-38 (181)
442 2bov_A RAla, RAS-related prote 92.6 0.073 2.5E-06 42.5 3.2 24 203-226 13-36 (206)
443 1vg8_A RAS-related protein RAB 92.5 0.098 3.3E-06 41.8 3.9 25 203-227 7-31 (207)
444 1pui_A ENGB, probable GTP-bind 92.5 0.045 1.5E-06 44.0 1.8 24 203-226 25-48 (210)
445 3dz8_A RAS-related protein RAB 92.5 0.079 2.7E-06 42.0 3.2 24 204-227 23-46 (191)
446 1ihu_A Arsenical pump-driving 92.5 0.15 5.2E-06 48.3 5.7 29 203-231 7-35 (589)
447 2xj4_A MIPZ; replication, cell 92.5 0.19 6.6E-06 42.9 5.9 27 205-231 5-32 (286)
448 3oes_A GTPase rhebl1; small GT 92.4 0.075 2.6E-06 42.5 3.1 25 203-227 23-47 (201)
449 3pqc_A Probable GTP-binding pr 92.4 0.069 2.4E-06 42.1 2.8 24 204-227 23-46 (195)
450 3cbq_A GTP-binding protein REM 92.4 0.057 1.9E-06 43.2 2.3 23 203-225 22-44 (195)
451 2fg5_A RAB-22B, RAS-related pr 92.4 0.076 2.6E-06 42.1 3.1 24 204-227 23-46 (192)
452 1gwn_A RHO-related GTP-binding 92.4 0.076 2.6E-06 42.9 3.1 25 203-227 27-51 (205)
453 1zd9_A ADP-ribosylation factor 92.4 0.08 2.7E-06 41.8 3.2 23 204-226 22-44 (188)
454 2fh5_B SR-beta, signal recogni 92.4 0.079 2.7E-06 42.8 3.2 24 204-227 7-30 (214)
455 3tkl_A RAS-related protein RAB 92.4 0.081 2.8E-06 41.8 3.2 24 204-227 16-39 (196)
456 2gf0_A GTP-binding protein DI- 92.3 0.078 2.7E-06 42.0 3.1 23 204-226 8-30 (199)
457 3reg_A RHO-like small GTPase; 92.3 0.082 2.8E-06 41.9 3.2 24 204-227 23-46 (194)
458 3gd7_A Fusion complex of cysti 92.3 0.072 2.5E-06 48.0 3.1 25 202-226 45-69 (390)
459 3tmk_A Thymidylate kinase; pho 92.3 0.11 3.7E-06 42.8 3.9 27 204-230 5-31 (216)
460 2ew1_A RAS-related protein RAB 92.3 0.08 2.7E-06 42.7 3.1 24 204-227 26-49 (201)
461 2gf9_A RAS-related protein RAB 92.3 0.085 2.9E-06 41.6 3.2 24 204-227 22-45 (189)
462 3lxx_A GTPase IMAP family memb 92.3 0.1 3.4E-06 43.2 3.7 24 203-226 28-51 (239)
463 2a5j_A RAS-related protein RAB 92.3 0.086 2.9E-06 41.8 3.2 23 204-226 21-43 (191)
464 1wcv_1 SOJ, segregation protei 92.3 0.13 4.3E-06 43.2 4.4 29 203-231 5-34 (257)
465 2cjw_A GTP-binding protein GEM 92.2 0.086 2.9E-06 42.1 3.2 23 204-226 6-28 (192)
466 1f6b_A SAR1; gtpases, N-termin 92.2 0.064 2.2E-06 43.0 2.4 23 204-226 25-47 (198)
467 2qnr_A Septin-2, protein NEDD5 92.2 0.066 2.3E-06 46.4 2.6 21 206-226 20-40 (301)
468 1x3s_A RAS-related protein RAB 92.2 0.088 3E-06 41.5 3.2 24 204-227 15-38 (195)
469 3e1s_A Exodeoxyribonuclease V, 92.2 0.18 6E-06 47.8 5.7 28 204-231 204-231 (574)
470 1z06_A RAS-related protein RAB 92.2 0.087 3E-06 41.6 3.1 23 204-226 20-42 (189)
471 3f9v_A Minichromosome maintena 92.2 0.037 1.3E-06 52.7 1.1 23 206-228 329-351 (595)
472 2p5s_A RAS and EF-hand domain 92.2 0.088 3E-06 42.0 3.2 24 203-226 27-50 (199)
473 4i1u_A Dephospho-COA kinase; s 92.1 0.099 3.4E-06 42.8 3.4 24 203-226 8-31 (210)
474 2obl_A ESCN; ATPase, hydrolase 92.1 0.088 3E-06 46.6 3.3 38 191-230 60-97 (347)
475 3tqf_A HPR(Ser) kinase; transf 92.0 0.1 3.5E-06 41.4 3.3 24 204-227 16-39 (181)
476 4bas_A ADP-ribosylation factor 92.0 0.11 3.8E-06 41.1 3.6 25 202-226 15-39 (199)
477 1zbd_A Rabphilin-3A; G protein 92.0 0.089 3.1E-06 42.0 3.0 23 204-226 8-30 (203)
478 3k53_A Ferrous iron transport 92.0 0.11 3.6E-06 44.1 3.6 24 204-227 3-26 (271)
479 1byi_A Dethiobiotin synthase; 91.9 0.18 6.2E-06 41.0 4.9 27 205-231 2-29 (224)
480 1tf7_A KAIC; homohexamer, hexa 91.9 0.19 6.4E-06 47.0 5.5 39 192-230 269-307 (525)
481 2wjy_A Regulator of nonsense t 91.9 0.3 1E-05 48.2 7.1 47 188-239 360-406 (800)
482 1ega_A Protein (GTP-binding pr 91.9 0.11 3.8E-06 44.9 3.7 24 204-227 8-31 (301)
483 2fv8_A H6, RHO-related GTP-bin 91.8 0.096 3.3E-06 42.1 3.1 23 204-226 25-47 (207)
484 2oze_A ORF delta'; para, walke 91.8 0.37 1.3E-05 41.1 7.0 27 204-230 34-63 (298)
485 2atx_A Small GTP binding prote 91.8 0.098 3.3E-06 41.4 3.1 24 204-227 18-41 (194)
486 2bcg_Y Protein YP2, GTP-bindin 91.8 0.098 3.3E-06 41.9 3.1 23 204-226 8-30 (206)
487 3llu_A RAS-related GTP-binding 91.8 0.076 2.6E-06 42.3 2.4 23 204-226 20-42 (196)
488 2q3h_A RAS homolog gene family 91.8 0.098 3.3E-06 41.7 3.0 23 204-226 20-42 (201)
489 2rcn_A Probable GTPase ENGC; Y 91.8 0.098 3.4E-06 46.5 3.2 23 205-227 216-238 (358)
490 3cph_A RAS-related protein SEC 91.7 0.11 3.6E-06 41.8 3.2 23 204-226 20-42 (213)
491 1g3q_A MIND ATPase, cell divis 91.7 0.22 7.5E-06 40.8 5.2 34 205-238 3-37 (237)
492 1zj6_A ADP-ribosylation factor 91.7 0.18 6.2E-06 39.6 4.5 25 202-226 14-38 (187)
493 3mfy_A V-type ATP synthase alp 91.6 0.35 1.2E-05 45.3 6.8 48 204-257 227-275 (588)
494 1dek_A Deoxynucleoside monopho 91.6 0.13 4.4E-06 43.1 3.6 23 205-227 2-24 (241)
495 2j0v_A RAC-like GTP-binding pr 91.6 0.11 3.6E-06 41.9 3.1 23 204-226 9-31 (212)
496 2o52_A RAS-related protein RAB 91.6 0.1 3.5E-06 41.8 2.9 24 203-226 24-47 (200)
497 2gco_A H9, RHO-related GTP-bin 91.6 0.11 3.7E-06 41.6 3.1 23 204-226 25-47 (201)
498 1ksh_A ARF-like protein 2; sma 91.6 0.1 3.4E-06 41.0 2.8 24 203-226 17-40 (186)
499 1moz_A ARL1, ADP-ribosylation 91.6 0.071 2.4E-06 41.7 1.9 25 202-226 16-40 (183)
500 2b6h_A ADP-ribosylation factor 91.6 0.097 3.3E-06 41.7 2.7 23 204-226 29-51 (192)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-44 Score=290.42 Aligned_cols=164 Identities=41% Similarity=0.637 Sum_probs=141.0
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|||||||+++|+++.|+++|+.+|+++|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||++||+++
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i 87 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTI 87 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHH
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHH
Confidence 59999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEeEEEEecccccccccccHHHHHHHHHhhhh-hhHHHHHHHHHHhhcccCCCCCCCccccccccCCCcc
Q 040979 81 LDSKKMNGQIVIPVFYQVDPSDVRKQKGSFGEAFIHLENNFA-GKVKKWRDAVTEASNLSGYDSTESRLCLLFWSGNKKC 159 (292)
Q Consensus 81 ~~~~~~~~~~vipif~~~~~~~vr~~~g~~~~~~~~~~~~~~-~~v~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (292)
+++.+.+++.|+||||+++|++||+|+|+|+++|.++..+.. +++++|+.||.++++++|+++. .+ |+++
T Consensus 88 ~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~-------e~~~ 158 (176)
T 3jrn_A 88 MDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DD-------DSKL 158 (176)
T ss_dssp HHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SC-------HHHH
T ss_pred HhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CC-------HHHH
Confidence 999988899999999999999999999999999999988743 6899999999999999998873 33 8999
Q ss_pred ccCCcccccccccc
Q 040979 160 EFFPLPYISKKLED 173 (292)
Q Consensus 160 ~~~i~~~v~~~~~~ 173 (292)
+++|+..|.+.++.
T Consensus 159 i~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 159 VDKIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998876
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-43 Score=291.07 Aligned_cols=165 Identities=40% Similarity=0.689 Sum_probs=154.8
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|||||||++.|.++.|+++|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++||.++
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 59999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc-CCcEEEeEEEEecccccccccccHHHHHHHHHhhhh-hhHHHHHHHHHHhhcccCCCCCCCccccccccCCCc
Q 040979 81 LDSKKM-NGQIVIPVFYQVDPSDVRKQKGSFGEAFIHLENNFA-GKVKKWRDAVTEASNLSGYDSTESRLCLLFWSGNKK 158 (292)
Q Consensus 81 ~~~~~~-~~~~vipif~~~~~~~vr~~~g~~~~~~~~~~~~~~-~~v~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (292)
+++.+. +++.|+||||+++|++||+|+|.|+++|.++..++. +++++|+.||.++++++|+++....+ +.+
T Consensus 115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~-------e~~ 187 (204)
T 3ozi_A 115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDK-------QGA 187 (204)
T ss_dssp HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSC-------HHH
T ss_pred HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCC-------HHH
Confidence 999864 578999999999999999999999999999998875 58999999999999999999887765 778
Q ss_pred cccCCccccccccc
Q 040979 159 CEFFPLPYISKKLE 172 (292)
Q Consensus 159 ~~~~i~~~v~~~~~ 172 (292)
++++|+..|.++++
T Consensus 188 ~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 188 IADKVSADIWSHIS 201 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88999988887765
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=5.1e-30 Score=204.90 Aligned_cols=115 Identities=19% Similarity=0.405 Sum_probs=107.4
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|||||||++.| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|++|.||+.|+..+
T Consensus 20 ~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~ 98 (154)
T 3h16_A 20 PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98 (154)
T ss_dssp SEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred CceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence 599999999999 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEeEEEEecccccccccccHHHHHHH
Q 040979 81 LDSKKMNGQIVIPVFYQVDPSDVRKQKGSFGEAFIH 116 (292)
Q Consensus 81 ~~~~~~~~~~vipif~~~~~~~vr~~~g~~~~~~~~ 116 (292)
+.+...++..|+||||+++|++|+++.|.|++.+..
T Consensus 99 ~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 99 FQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp TCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 998777778899999999999999999988776543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.92 E-value=1.9e-27 Score=187.64 Aligned_cols=103 Identities=15% Similarity=0.332 Sum_probs=77.5
Q ss_pred CCcEEEccccccCccchHHHHHHHHHh--CCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHR--KQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELV 78 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~ 78 (292)
.|||||||++.|. .||++|+++|++ .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|++|.||+.|+.
T Consensus 10 ~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~ 87 (146)
T 3ub2_A 10 DYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQML 87 (146)
T ss_dssp SEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHH
T ss_pred cceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHH
Confidence 5999999999998 789999999998 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEeEEEEeccccccc
Q 040979 79 KILDSKKMNGQIVIPVFYQVDPSDVRK 105 (292)
Q Consensus 79 ~~~~~~~~~~~~vipif~~~~~~~vr~ 105 (292)
.++.+.......+|||||+++++++..
T Consensus 88 ~al~~~~~~~~~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 88 QALTEAPGAEGCTIPLLSGLSRAAYPP 114 (146)
T ss_dssp HHHHTSSSSSSEEEEEECSCCGGGSCG
T ss_pred HHHHHHhhcCCcEEEEEcCCChhhCCH
Confidence 999887333347789999988666543
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.89 E-value=1.3e-24 Score=174.09 Aligned_cols=98 Identities=19% Similarity=0.351 Sum_probs=89.4
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhC--CCeEEeeCCCCCCCCcchHHHHHHHh-hcceEEEEEccCCcCchhhHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRK--QIQFFIDDEELRKGDEISPAFSNAIQ-NSDISIVIFSKDYASSKWCLNEL 77 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~S~wc~~El 77 (292)
.|||||||+++|. .||.+|+++|+++ ||++|+|++|+.||+++.++|.++|+ +|+++|+|+|++|++|.||+.|+
T Consensus 16 ~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El 93 (160)
T 2js7_A 16 RFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQT 93 (160)
T ss_dssp CEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHH
T ss_pred ceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHH
Confidence 4999999999997 8999999999985 69999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHhh-hcCCcEEEeEEEEecc
Q 040979 78 VKILDSK-KMNGQIVIPVFYQVDP 100 (292)
Q Consensus 78 ~~~~~~~-~~~~~~vipif~~~~~ 100 (292)
..++.+. ..++..+|||+|+.-+
T Consensus 94 ~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 94 KFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHccCCCEEEEEEEcccc
Confidence 9999875 4445689999998654
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=1.3e-24 Score=172.41 Aligned_cols=96 Identities=16% Similarity=0.338 Sum_probs=88.0
Q ss_pred CCcEEEccccccCccchHHH-HHHHHHhC--CCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSH-LAAALHRK--QIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNEL 77 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El 77 (292)
.|||||||++.|. .||.+ |+++|+++ |+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|++|.||+.|+
T Consensus 5 ~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El 82 (149)
T 1fyx_A 5 XYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82 (149)
T ss_dssp CEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHS
T ss_pred cceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHH
Confidence 5999999999998 79997 99999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-hcCCcEEEeEEEEe
Q 040979 78 VKILDSK-KMNGQIVIPVFYQV 98 (292)
Q Consensus 78 ~~~~~~~-~~~~~~vipif~~~ 98 (292)
..++.+. +.++..+|||||..
T Consensus 83 ~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 83 DFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp CCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEEEecC
Confidence 9887543 55667899999873
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.88 E-value=2.9e-24 Score=174.75 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=85.2
Q ss_pred CCcEEEccccccCccchHHH-HHHHHHh--CCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSH-LAAALHR--KQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNEL 77 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El 77 (292)
.|||||||+++|. .||.+ |+++|++ +|+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|+.|.||+.|+
T Consensus 35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El 112 (178)
T 2j67_A 35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112 (178)
T ss_dssp CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence 4999999999998 89986 9999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-hcCCcEEEeEEEEecc
Q 040979 78 VKILDSK-KMNGQIVIPVFYQVDP 100 (292)
Q Consensus 78 ~~~~~~~-~~~~~~vipif~~~~~ 100 (292)
..++.+. ..++..+|||||+.-+
T Consensus 113 ~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 113 YFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp HHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHhcCCCEEEEEEecCCC
Confidence 9998654 4556789999988443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.88 E-value=2.6e-23 Score=166.35 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=88.0
Q ss_pred CCcEEEccccccCc---------cchHHHHH-HHHH-hCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCc-
Q 040979 1 KYEVFLNFRGKDTR---------NGFTSHLA-AALH-RKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYA- 68 (292)
Q Consensus 1 ~~dvFiSy~~~d~~---------~~~~~~l~-~~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~- 68 (292)
.|||||||++.|.. ..||.+|. +.|| +.||++|+|++|+.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 59999999999962 45777755 5799 799999999999999999999999999999999999999997
Q ss_pred CchhhHHHHHHHHHhh-hcCCcEEEeEEEEecc
Q 040979 69 SSKWCLNELVKILDSK-KMNGQIVIPVFYQVDP 100 (292)
Q Consensus 69 ~S~wc~~El~~~~~~~-~~~~~~vipif~~~~~ 100 (292)
.|.||+.|+..++.+. ..++..+|||++...+
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999877 6667899999887554
No 9
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.71 E-value=4.6e-17 Score=155.08 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=86.7
Q ss_pred cccchhHHHHHHhhhhc-CCCeEEEEEEcCCcccHHHHHHHHHH----HHhCCCCceEEEecccccccc--ccHHHHHHH
Q 040979 184 VGLNSRIEDLKSLLRLE-LHDVRVIGIWGMGGIGKTTIASVVFH----QISGDFQGKCFMRNVRDESNK--KGVVHVRDE 256 (292)
Q Consensus 184 ~gr~~~~~~l~~~l~~~-~~~~~~i~I~G~gGiGKTtLa~~v~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~ 256 (292)
+||+.++++|.++|... ....++|+|+||||+||||||+.+|+ +++.+|+.++|++ +++. +++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999998754 34689999999999999999999997 6788899999996 5554 488999999
Q ss_pred HHHHHhcccc--CCCCCC------cHHHHHHHhCCc-eEEEEEeC
Q 040979 257 VICEVLEENL--KIGTSI------IPPRIQKRLQLM-KVLIVLDD 292 (292)
Q Consensus 257 il~~l~~~~~--~~~~~~------~~~~l~~~L~~k-r~LlVLDD 292 (292)
|+.+++.... ...+.+ +...+++.|.++ |+||||||
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDd 251 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDD 251 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9999986532 122221 378899999996 99999998
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=165.21 Aligned_cols=99 Identities=19% Similarity=0.352 Sum_probs=90.1
Q ss_pred CCcEEEccccccCccchH-HHHHHHHHh-----CCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhH
Q 040979 1 KYEVFLNFRGKDTRNGFT-SHLAAALHR-----KQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCL 74 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 74 (292)
.|||||||++.|. .|| ++|.+.||+ .||++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|.||.
T Consensus 670 ~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~ 747 (844)
T 3j0a_A 670 KYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCL 747 (844)
T ss_dssp CCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTT
T ss_pred eccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHH
Confidence 5999999999998 788 779999995 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEeEEEEeccc
Q 040979 75 NELVKILDSK-KMNGQIVIPVFYQVDPS 101 (292)
Q Consensus 75 ~El~~~~~~~-~~~~~~vipif~~~~~~ 101 (292)
.|+..+..+. ++++.++|||||+.-+.
T Consensus 748 ~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 748 EAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp HHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999888776 56677899999985553
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.54 E-value=1e-14 Score=150.33 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=84.4
Q ss_pred CCCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH---HhCCCCceE-EEeccccccc--cc
Q 040979 175 SDLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ---ISGDFQGKC-FMRNVRDESN--KK 248 (292)
Q Consensus 175 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~---~~~~f~~~~-~~~~~~~~~~--~~ 248 (292)
..|..+..|+||+.++++|.++|...+.+.++|+|+||||+||||||++++++ ...+|...+ |+. +++ ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCch
Confidence 45666778999999999999999766667899999999999999999999985 456676555 665 433 23
Q ss_pred cHHHHHHHHHHHHhccccCC----CCCC-cHHHHHHHhCCc--eEEEEEeC
Q 040979 249 GVVHVRDEVICEVLEENLKI----GTSI-IPPRIQKRLQLM--KVLIVLDD 292 (292)
Q Consensus 249 ~~~~~~~~il~~l~~~~~~~----~~~~-~~~~l~~~L~~k--r~LlVLDD 292 (292)
.....+..++..+....... .+.+ +...++..|.++ |+||||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd 244 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDD 244 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEES
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEec
Confidence 44555666777776543211 1122 567788888877 99999998
No 12
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.47 E-value=1.5e-13 Score=136.43 Aligned_cols=106 Identities=17% Similarity=0.074 Sum_probs=80.1
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHH--HHhCCCCc-eEEEeccccccccccHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFH--QISGDFQG-KCFMRNVRDESNKKGVVHVRDEVI 258 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~il 258 (292)
..+||+.+++.|.++|... ++.++|+|+||||+||||||+.+|+ +++.+|+. ++|++ +++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHH
Confidence 3599999999999988742 3478999999999999999999997 57788987 78887 666677778877777
Q ss_pred HHHhccccCC---CC--------CC-cHHHHHHHh---CCceEEEEEeC
Q 040979 259 CEVLEENLKI---GT--------SI-IPPRIQKRL---QLMKVLIVLDD 292 (292)
Q Consensus 259 ~~l~~~~~~~---~~--------~~-~~~~l~~~L---~~kr~LlVLDD 292 (292)
..+....+.. .+ .+ +...|++.| .++|+||||||
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDD 252 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEES
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 7654322110 11 11 355677765 67999999998
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=129.64 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH---hCCCC-ceEEEeccccccccccH
Q 040979 175 SDLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI---SGDFQ-GKCFMRNVRDESNKKGV 250 (292)
Q Consensus 175 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 250 (292)
..|..+..|+||+.+++.|.++|.....+.++++|+||||+||||||..++++. ...|+ .++|+. ++.. +.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~----~~~~-~~ 192 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS----VGKQ-DK 192 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE----EESC-CH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE----CCCC-ch
Confidence 455667789999999999999987555568999999999999999999999743 66795 677776 3322 22
Q ss_pred HHHHHH---HHHHHhcccc--C--CCCCC-cHHHHHHHhCC--ceEEEEEeC
Q 040979 251 VHVRDE---VICEVLEENL--K--IGTSI-IPPRIQKRLQL--MKVLIVLDD 292 (292)
Q Consensus 251 ~~~~~~---il~~l~~~~~--~--~~~~~-~~~~l~~~L~~--kr~LlVLDD 292 (292)
..+... ++..+..... . ..+.+ ....++..|.+ +++||||||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDd 244 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD 244 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 223333 3334432111 1 11122 45667777766 789999998
No 14
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.01 E-value=2e-09 Score=98.12 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=75.8
Q ss_pred CCCCccccchhHHHHHHhh-hh--cC--CCeEEEEE--EcCCcccHHHHHHHHHHHHhCC-----CC-ceEEEecccccc
Q 040979 179 DLDGFVGLNSRIEDLKSLL-RL--EL--HDVRVIGI--WGMGGIGKTTIASVVFHQISGD-----FQ-GKCFMRNVRDES 245 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l-~~--~~--~~~~~i~I--~G~gGiGKTtLa~~v~~~~~~~-----f~-~~~~~~~~~~~~ 245 (292)
.+..++||+.+++.+..++ .. .+ ...+.+.| +|++|+|||||++.++++.... +. ..+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4567999999999999888 52 12 23456666 9999999999999999976542 22 235554 33
Q ss_pred ccccHHHHHHHHHHHHhccccCCC-CCC-cHHHHHHHhC--CceEEEEEeC
Q 040979 246 NKKGVVHVRDEVICEVLEENLKIG-TSI-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 246 ~~~~~~~~~~~il~~l~~~~~~~~-~~~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
...+...+...++..++...+... +.. ....+.+.|. +++++|||||
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe 146 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDE 146 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 446778888899888865422111 111 3555666664 6799999997
No 15
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.93 E-value=5.2e-09 Score=94.46 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=77.0
Q ss_pred CCCccccchhHHHHHHhhhh--cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC------C-C-ceEEEeccccccccc-
Q 040979 180 LDGFVGLNSRIEDLKSLLRL--ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD------F-Q-GKCFMRNVRDESNKK- 248 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f-~-~~~~~~~~~~~~~~~- 248 (292)
+..++||+.+++.+..++.. .....+.+.|+|++|+||||||+.+++++... + . ..+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 46799999999999888763 33446789999999999999999999976332 2 2 334454 33334
Q ss_pred cHHHHHHHHHHHHhccccCCCC--CC-cHHHHHHHhCCceEEEEEeC
Q 040979 249 GVVHVRDEVICEVLEENLKIGT--SI-IPPRIQKRLQLMKVLIVLDD 292 (292)
Q Consensus 249 ~~~~~~~~il~~l~~~~~~~~~--~~-~~~~l~~~L~~kr~LlVLDD 292 (292)
+...+...++..+.+....... .. ....+.+.+..++.+|||||
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDE 141 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDE 141 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEET
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEEC
Confidence 6778888888887543222111 12 46677778887777999997
No 16
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.91 E-value=6.6e-09 Score=93.60 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCCCCccccchhHHHHHHhhhhc--CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-----C-ceEEEecccccccccc
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLE--LHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-----Q-GKCFMRNVRDESNKKG 249 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-----~-~~~~~~~~~~~~~~~~ 249 (292)
+.+..++||+.+++.+..++... ....+.+.|+|++|+||||||+.+++.....+ . ..+++. .....+
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCC
Confidence 34578999999999999988532 34567899999999999999999999764321 2 234454 444567
Q ss_pred HHHHHHHHHHHHhccccCCCC-CC-cHHHHHHHhC--CceEEEEEeC
Q 040979 250 VVHVRDEVICEVLEENLKIGT-SI-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 250 ~~~~~~~il~~l~~~~~~~~~-~~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
...+...++..++...+.... .. ....+.+.+. +++++|||||
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE 138 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDE 138 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEET
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcc
Confidence 778888888888553321111 11 3455666663 4688999997
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.83 E-value=5.6e-09 Score=93.93 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCccccchhHHHHHHhhhhc--CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC---ceEEEeccccccccccHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLE--LHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ---GKCFMRNVRDESNKKGVVH 252 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~--~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 252 (292)
..+..++||+.+++.+.+++... ....+.+.|+|++|+|||||++.+++.+...+. ..+++. .....+...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 44578999999999999888632 445678999999999999999999997755432 334554 333345666
Q ss_pred HHHHHHHHHhccccCCC-CCC-cHHHHHHHhC--CceEEEEEeC
Q 040979 253 VRDEVICEVLEENLKIG-TSI-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 253 ~~~~il~~l~~~~~~~~-~~~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
+...++..++...+... +.. ....+.+.+. +++++|||||
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE 136 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDE 136 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEET
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 66676666543222111 111 3444555554 3488999996
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=5.1e-08 Score=87.91 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=74.0
Q ss_pred CCCCccccchhHHHHHHhhhhc--CCC--eEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEeccccccccccHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLE--LHD--VRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~--~~~--~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 253 (292)
.+..++||+.+++.+..++... ... .+.+.|+|++|+|||||++.+++...... ...+++. .+...+...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 4467999999999998888641 222 34899999999999999999999876542 2344554 3445567788
Q ss_pred HHHHHHHHhccccCCC-CCC-cHHHHHHHhC--CceEEEEEeC
Q 040979 254 RDEVICEVLEENLKIG-TSI-IPPRIQKRLQ--LMKVLIVLDD 292 (292)
Q Consensus 254 ~~~il~~l~~~~~~~~-~~~-~~~~l~~~L~--~kr~LlVLDD 292 (292)
...++..++...+... ... ....+.+.+. +++.+|||||
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE 133 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 133 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 8888887754322111 111 3444444443 5688999996
No 19
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.76 E-value=1.1e-08 Score=90.82 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=42.0
Q ss_pred CCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
++..+..++||+.+++.+.+++..+ +++.|+|++|+|||||++.++++.
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc
Confidence 4445667999999999999988742 689999999999999999999875
No 20
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=1.4e-07 Score=83.80 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=44.5
Q ss_pred CCCCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 176 DLTDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 176 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
++..+..++||+.+++.+.+ +.. +++.|+|++|+|||||++.++++.... .+|+.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~ 62 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD 62 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE
Confidence 33456679999999999988 752 589999999999999999999987532 46664
No 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.6e-07 Score=81.39 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=69.0
Q ss_pred ccccchhHHHHHHhhhh--cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-----C--ceEEEeccccccccccHHHH
Q 040979 183 FVGLNSRIEDLKSLLRL--ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-----Q--GKCFMRNVRDESNKKGVVHV 253 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~~ 253 (292)
+.||+.+++.+...|.. .......+-|+|++|+|||++++.+++++.... + ..+.+. .....+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHH
Confidence 88999999999887763 345677889999999999999999999875321 1 123343 2334567778
Q ss_pred HHHHHHHHhccccCCCCCCcHHHHHHH---h---CCceEEEEEeC
Q 040979 254 RDEVICEVLEENLKIGTSIIPPRIQKR---L---QLMKVLIVLDD 292 (292)
Q Consensus 254 ~~~il~~l~~~~~~~~~~~~~~~l~~~---L---~~kr~LlVLDD 292 (292)
...|++++.+..... + .....|.+. + .+++++|+||+
T Consensus 98 ~~~I~~~L~g~~~~~-~-~~~~~L~~~f~~~~~~~~~~~ii~lDE 140 (318)
T 3te6_A 98 YEKIWFAISKENLCG-D-ISLEALNFYITNVPKAKKRKTLILIQN 140 (318)
T ss_dssp HHHHHHHHSCCC--C-C-CCHHHHHHHHHHSCGGGSCEEEEEEEC
T ss_pred HHHHHHHhcCCCCCc-h-HHHHHHHHHHHHhhhccCCceEEEEec
Confidence 888888886543211 1 122333332 2 35678999995
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=1e-06 Score=70.78 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=40.4
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++|++..++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345699999999999888764 3345678999999999999999999764
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=1.4e-06 Score=69.69 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=40.7
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|++.+++.+.+.+.. ...+.+.|+|.+|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345699999999998887763 33456789999999999999999997644
No 24
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.38 E-value=2.1e-06 Score=71.47 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....++|++..++.+..++..+. ..+.+.|+|++|+||||||+.+++.+...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34569999999999998887432 23578999999999999999999976543
No 25
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.33 E-value=1.5e-06 Score=71.50 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=41.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.....++|++..++.+..++.... ...+.|+|.+|+|||+||+.+++.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344568999999999998887432 234899999999999999999997643
No 26
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.00 E-value=6.8e-06 Score=60.67 Aligned_cols=62 Identities=8% Similarity=0.013 Sum_probs=48.9
Q ss_pred CCcEEEccccccCccchHHHHHHHHHhCCCeEEeeCCCCCCCCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 1 KYEVFLNFRGKDTRNGFTSHLAAALHRKQIQFFIDDEELRKGDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 1 ~~dvFiSy~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+|.+||||+.+| -.+.|...|.+.|+...- +.|+.|.++|++.++....|+||..|+..+
T Consensus 4 ~~~lFISh~~~d----~~~~L~~~l~~~~f~~~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 4 EIRLYITEGEVE----DYRVFLERLEQSGLEWRP----------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CEEEEECCCCSH----HHHHHHHHHHHHCSCEEE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred eEEEEEecccHh----HHHHHHHHHhCCCCeeec----------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 588999999988 255555555555664432 678999999999999999999999999877
Q ss_pred HH
Q 040979 81 LD 82 (292)
Q Consensus 81 ~~ 82 (292)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 27
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=7.5e-06 Score=71.63 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=40.8
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.....++|++..++.+..++..+. ...+.++|++|+||||+|+.+++.+..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 344569999999999998887432 223899999999999999999998643
No 28
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.93 E-value=2.4e-05 Score=63.85 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..+.|+|.+|+|||+||+.+++.........+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68899999999999999999998766544555554
No 29
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=4.1e-05 Score=66.95 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=41.2
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....+++|++..++.+..++..+. ...+.++|++|+||||+|+.+++.+..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 345679999999999988887542 334899999999999999999998643
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=3.8e-05 Score=70.80 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+.|+|.+|+||||||+.+++.+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999876554
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.88 E-value=7.5e-05 Score=64.25 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=41.8
Q ss_pred CCCCCccccchhHHHHHHhhhhc-----------CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLE-----------LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.....++|.+..++.+.+.+... ....+.+.|+|++|+|||+||+.+++....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44567999999999988876421 134567999999999999999999998643
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.79 E-value=7.8e-05 Score=65.06 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++|.+..++.+.+++.. +-...+.+.++|++|+|||+||+.+++...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34588999888888776642 124467799999999999999999999864
No 33
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.77 E-value=0.0001 Score=64.85 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....+.|+|++|+||||||+.+++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4567899999999999999999997644
No 34
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.73 E-value=4.2e-05 Score=66.67 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=39.5
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|++..++.+.+++..+ ....+.++|++|+|||++|+.+++.+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 3456899999999888887643 223389999999999999999999863
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=7.9e-05 Score=59.66 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+.|+|++|+|||||++.+++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999764
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.69 E-value=0.00013 Score=64.99 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=41.1
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|++..++.+...+..+. ....+.++|++|+||||+|+.+++.+..
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34569999999999988886432 2357889999999999999999987643
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=4.8e-05 Score=71.56 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=41.1
Q ss_pred CCCCccccchhHHHHHHhhhhcC---------------CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLEL---------------HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~---------------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|++..++.+..++.... ...+.+.|+|++|+||||||+.+++.+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44669999999999998886310 134789999999999999999999987
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.69 E-value=8.7e-05 Score=65.37 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCCCccccchhHHHHHHhhh----------hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 179 DLDGFVGLNSRIEDLKSLLR----------LELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~----------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....++|.+..++.+.+++. ......+-+.++|++|+|||+||+++++.....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 34568999999998888762 112235678999999999999999999986443
No 39
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.58 E-value=0.00022 Score=66.19 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++|++.+++.+...+... ....+.++|.+|+|||+||+.+++.+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 456999999999998888632 2345679999999999999999998744
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.57 E-value=5.9e-05 Score=58.37 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 47899988888887775323334457899999999999999999853
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.57 E-value=0.00027 Score=65.16 Aligned_cols=53 Identities=25% Similarity=0.485 Sum_probs=40.4
Q ss_pred CCCCCccccchhH---HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 178 TDLDGFVGLNSRI---EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 178 ~~~~~~~gr~~~~---~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
.....++|.+..+ ..+...+..+ ....+.++|.+|+||||||+.+++.....|
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f 78 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADV 78 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3456789988777 5666666643 346789999999999999999999865443
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.56 E-value=0.00012 Score=65.47 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=39.7
Q ss_pred CCCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|.+..++.+.+.+.. .....+-+.++|++|+|||+||+.+++....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345689999988888876631 1122456889999999999999999998743
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.55 E-value=0.00029 Score=60.30 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=35.1
Q ss_pred CccccchhHHHHHH-------hhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 182 GFVGLNSRIEDLKS-------LLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 182 ~~~gr~~~~~~l~~-------~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++|....++.+.. .+.. .......+.++|.+|+|||+||+.+++...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46777666655544 2221 245578899999999999999999999854
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00039 Score=60.95 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.+..++.+.+++..+ .....+.+.|++|+|||++|+.+++.+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 34567999999999998888743 2346778889999999999999998863
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00025 Score=70.71 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=40.1
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....++||+.++..+...|... ..+.+.++|.+|+||||||+.+++++.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456999999999998887632 334578999999999999999999864
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.52 E-value=7.2e-05 Score=66.09 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=42.4
Q ss_pred CCCCccccchhHHHHHHhhhhc---CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLE---LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....++|++..++.+..++... ......+.|+|++|+|||+||+.++++....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4457999999999988887642 3345678999999999999999999876443
No 47
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.49 E-value=0.00016 Score=67.49 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhhhc-----------CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLE-----------LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~-----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++|.+..++.+.+++... ....+.+.|+|.+|+|||+||++++++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 45889999999988877532 24456789999999999999999998763
No 48
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=7.4e-05 Score=64.75 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHhhhhc----------CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLE----------LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~----------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|.+..++.+.+.+... ....+.+.++|++|+||||||+.+++...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34456899999998888776421 12356889999999999999999998764
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.46 E-value=0.00066 Score=58.93 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred CccccchhHHHHHHhhhhcC-------CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 182 GFVGLNSRIEDLKSLLRLEL-------HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~-------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 57898888888877665321 124689999999999999999999976543
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.43 E-value=0.00017 Score=61.04 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCCccccchhHHHHHHhhhh-c---------CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-E---------LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-~---------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+++|.+..++.+.+++.. . ....+.+.++|++|+|||+||+.++++....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45688998888887766541 1 1234568899999999999999999986543
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00037 Score=68.52 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++||+.+++.+...|... ....+.++|.+|+|||++|+.+++++.
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 456999999999998887632 345678999999999999999999763
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.42 E-value=0.00027 Score=65.17 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=39.9
Q ss_pred CCCCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.....++|.+..++.+.+.+.. .....+.+.++|++|+|||+||+.+++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3446689999888888876531 12345788999999999999999999986
No 53
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.41 E-value=0.00011 Score=64.25 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=41.3
Q ss_pred CCCCccccchhHHHHHHhhhh---cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL---ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|++..+..+..++.. .......+.|+|++|+|||+||+.+++....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456799999998888877752 1233467889999999999999999998743
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.41 E-value=0.00067 Score=62.66 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHhhh---hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLR---LELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 4679999988777655543 233334678899999999999999999987643
No 55
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.40 E-value=0.00039 Score=57.08 Aligned_cols=45 Identities=22% Similarity=0.139 Sum_probs=31.1
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.+++..+-....++.|.|.+|+|||||+..++. .. -..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEE
Confidence 45555542334467899999999999999999987 21 23455554
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.0007 Score=59.60 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=38.2
Q ss_pred CCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
-..+.|.+..++.+.+.+.. .....+.+.++|++|+|||+||+++++..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 45688988888888776531 11234778999999999999999999986
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00026 Score=62.65 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|++..++.+..++..+.. ..+.++|++|+||||+|+.+++.+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999888864322 2389999999999999999998753
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.00062 Score=66.96 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++|++.+++.+...|.. .....+.++|.+|+|||++|+.+++.+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999999999988863 2334578999999999999999999863
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.30 E-value=0.00049 Score=57.07 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCCCccccc---hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLN---SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~---~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++|.. ..++.+..++.. ...+.+.|+|++|+||||||+.+++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345677633 333444444432 24578899999999999999999987654
No 60
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.27 E-value=0.001 Score=58.16 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHHhhhhcCC-CeEEEEEEcCCcccHHHHHHHHHHHHh-CCCCceEEEe
Q 040979 192 DLKSLLRLELH-DVRVIGIWGMGGIGKTTIASVVFHQIS-GDFQGKCFMR 239 (292)
Q Consensus 192 ~l~~~l~~~~~-~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~f~~~~~~~ 239 (292)
.+.+++..... ....+.++|.+|+|||+||.++++... ..-..+.++.
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34445543222 256788999999999999999999765 4433344443
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.24 E-value=0.00038 Score=62.01 Aligned_cols=52 Identities=29% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHhh---hhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLL---RLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l---~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++|++..++.+..++ ..+....+.+.++|++|+|||+||+.+++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 567999998877755443 3333334689999999999999999999987643
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.23 E-value=0.00027 Score=60.19 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....++|.+..++.+.+++.. +....+-+.++|.+|+|||+||+.++++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 445689999888888776541 11223447899999999999999999986543
No 63
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.22 E-value=0.00027 Score=63.22 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=40.8
Q ss_pred CCCCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|.+..++.+.+.+.. .....+.+.|+|++|+|||+||+.+++...
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445689999999988887642 123456789999999999999999998753
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.00043 Score=58.58 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCCCCccccchhHHHHHHhhhh-c---------CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL-E---------LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~-~---------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....+++|.+..++.+.+++.. . ....+-+.|+|.+|+||||||+.+++....
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 3445688988887777665431 0 112345889999999999999999997643
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.00036 Score=61.76 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=37.2
Q ss_pred CCCccccchhHHHHHHhhhhc---CCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 180 LDGFVGLNSRIEDLKSLLRLE---LHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...++|.+..++.+...+..+ ......+.++|++|+||||||+.++..+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345778877777776665532 2334679999999999999999999976
No 66
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.16 E-value=0.00041 Score=60.23 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHhhhhc-------------CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 182 GFVGLNSRIEDLKSLLRLE-------------LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~-------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.++|.+..++.+.+++..- ......+.++|.+|+|||+||+.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4889988888887665421 334567899999999999999999987643
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.14 E-value=0.00011 Score=56.72 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=33.8
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++|+...++.+.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 47899888888887765322233457899999999999999988643
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.11 E-value=0.0004 Score=60.13 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhhh------------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRL------------ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~------------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.+..++.+...+.. .......+.++|.+|+|||++|+.+++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3588999888888776643 1123456889999999999999999998743
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00054 Score=60.71 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=37.8
Q ss_pred CCCCccccchhHHHHHHhh-hhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 179 DLDGFVGLNSRIEDLKSLL-RLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l-~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|.+..++.+..++ ..+.. .. +.++|+.|+||||+++.++..+
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 3456889998888888877 43322 23 8999999999999999999865
No 70
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.02 E-value=0.00079 Score=60.78 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=40.6
Q ss_pred CCCCCccccchhHHHHHHhhhh----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRL----------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|.+..++.+..++.. .....+.+.|+|.+|+|||+||+.++++..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 3456799999999988887631 112356889999999999999999998753
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.00051 Score=58.43 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++|....+..+.+.+..-......+.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4588998888887766653222335678999999999999999998643
No 72
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.90 E-value=0.00051 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 73
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0011 Score=60.74 Aligned_cols=52 Identities=29% Similarity=0.541 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
-.++.|.+..++.|.+.+.. +-...+-+.++|++|+|||+||++++++....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35677888888888776532 22446789999999999999999999986543
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.89 E-value=0.0028 Score=62.31 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+.|.+..+++|.+++.. +-...+-|.++|++|+|||+||++++++...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4577888888888876542 1234678999999999999999999987644
No 75
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0011 Score=60.58 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=39.8
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++.|.+..++.|.+.+.. +-...+-+.++|++|+|||+||++++++....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5677888888888776531 22446779999999999999999999986544
No 76
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0011 Score=60.66 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=40.6
Q ss_pred CCCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.-..+.|.+..++.|.+.+.. +-...+-+.++|++|+|||.||++++++....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 345678899888888765431 22446789999999999999999999986543
No 77
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00091 Score=60.51 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++.|.+..+++|.+.+.. +-...+-+.++|++|+|||.||++++++....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 5677889888888776542 22346778999999999999999999976544
No 78
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.84 E-value=0.00038 Score=61.11 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+++.|+|++|+|||+||..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467789999999999999999886
No 79
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.83 E-value=0.0039 Score=55.30 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC------CCCceEEEeccccccccccHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG------DFQGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
...|..+|..+-....++.|+|.+|+||||||..++..... .-..++|+. ....++...+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~----~E~~~~~~~l~ 174 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID----TENTFRPDRLR 174 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE----SSSCCCHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE----CCCCCCHHHHH
Confidence 34566666533455789999999999999999999886432 123456665 33334454443
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0014 Score=60.26 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++.|.+..++.|.+.+.. +-...+-|.++|++|+|||+||++++++....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 5678899888888775431 23457788999999999999999999976544
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.78 E-value=0.0034 Score=55.90 Aligned_cols=50 Identities=28% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...|..+|. .+-...+++.|+|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345555565 33345679999999999999999999876544334566665
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.0015 Score=57.64 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 180 LDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++|.+..++.+...+..+ ....+.++|++|+||||+|+.++..+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345778877777777777643 222389999999999999999999754
No 83
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.77 E-value=0.00087 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|.|.|+.|+||||+|+.+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 84
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.76 E-value=0.0011 Score=59.17 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHhhhh-------------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 183 FVGLNSRIEDLKSLLRL-------------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 183 ~~gr~~~~~~l~~~l~~-------------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
++|.+..++.+...+.. .......+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 68888888877766620 011346789999999999999999998763
No 85
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.76 E-value=0.0041 Score=55.42 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..|..+|. .+-...+++.|.|.+|+||||||..++......=..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45666665 33345689999999999999999999987654323456665
No 86
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.75 E-value=0.0055 Score=48.60 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=60.6
Q ss_pred ccccCccchHHHHHHHHHhCCCeEEeeCCCCC-------C-CCcchHHHHHHHhhcceEEEEEccCCcCchhhHHHHHHH
Q 040979 9 RGKDTRNGFTSHLAAALHRKQIQFFIDDEELR-------K-GDEISPAFSNAIQNSDISIVIFSKDYASSKWCLNELVKI 80 (292)
Q Consensus 9 ~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~-------~-g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 80 (292)
+..|. .....|...-.....-.|.|..+.. . -..|-+.+.++|..|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 34444 5567777666666665677765542 2 346888999999999999999999999999999999988
Q ss_pred HHhhhcCCcEEEeEE
Q 040979 81 LDSKKMNGQIVIPVF 95 (292)
Q Consensus 81 ~~~~~~~~~~vipif 95 (292)
.. ..+.+||-|.
T Consensus 105 i~---~~~~PII~Vy 116 (189)
T 3hyn_A 105 IG---TKGLPVIVIY 116 (189)
T ss_dssp TT---TTCCCEEEEE
T ss_pred HH---hcCCcEEEEE
Confidence 72 2345676663
No 87
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.0017 Score=52.86 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=31.5
Q ss_pred chhHHHHHHhhhh-cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 187 NSRIEDLKSLLRL-ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 187 ~~~~~~l~~~l~~-~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+..++.+.+.+.. ......+++|.|..|+|||||++.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555554442 234568999999999999999999988654
No 88
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.72 E-value=0.0017 Score=54.68 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred CCCCccccchhHHHHHHhhhh-cC---------CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL-EL---------HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~-~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|.+..+..+.++... .. .-.+-+.|+|.+|+|||||++.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678887776666654431 10 1112389999999999999999998764
No 89
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.72 E-value=0.0038 Score=55.87 Aligned_cols=50 Identities=24% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...|..+|. .+=...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555564 22234568899999999999999998886544334567776
No 90
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.001 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....|.|+|++|+||||+++.++..+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998763
No 91
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.71 E-value=0.0013 Score=57.47 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 182 GFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++|....+..+.+.+..-......+.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 57899888888887776433334567899999999999999999864
No 92
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.67 E-value=0.0018 Score=53.01 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....+++|.|..|.|||||++.+...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999988654
No 93
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.0011 Score=52.94 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+.|.++|++|+||||+|+.+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 94
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.62 E-value=0.0014 Score=56.81 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+.+.++|++|+|||+||+++++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345788899999999999999999987443
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.57 E-value=0.0024 Score=54.69 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCCccccchhHHHHHHhhhh-cC---------CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL-EL---------HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~-~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|.+..+..+.++... .. .-.+-+.|+|.+|+|||||++.++....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 345688888777776665431 10 1112389999999999999999998764
No 96
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0024 Score=58.07 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=40.1
Q ss_pred CCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
-.++-|.+..+++|.+.+.. +-...+=|.++|++|+|||.||++++++....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 35677888888888776531 22346789999999999999999999986544
No 97
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.52 E-value=0.0013 Score=51.57 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+|.|.|++|+||||+|+.+ ++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 54
No 98
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.003 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..|.|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 99
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.013 Score=51.03 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++.|+|.+|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876543
No 100
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0017 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+..+|+|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 101
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.51 E-value=0.0022 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+|.|.|++|+||||+|+.+.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 102
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.50 E-value=0.0021 Score=56.37 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|++..+..+...+..+ ..+.++|.+|+|||+||+.+++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35889888887776665532 36889999999999999999986543
No 103
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.50 E-value=0.0032 Score=54.58 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....+|+|.|..|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44578999999999999999999888654
No 104
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.49 E-value=0.0021 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+|.|.|++|.|||||++.+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998765
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.49 E-value=0.0016 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999865
No 106
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.48 E-value=0.0018 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 107
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.47 E-value=0.0058 Score=54.51 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 190 IEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 190 ~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
...|..+|. .+=...+++.|.|.+|+||||||..++......=..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345555564 22334678999999999999999999886554434567775
No 108
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.0021 Score=63.61 Aligned_cols=51 Identities=27% Similarity=0.424 Sum_probs=40.7
Q ss_pred CCCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++|.+..++.+.+++.. +-.....+.|+|.+|+||||||+.++.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45689999999999887753 2234567999999999999999999886543
No 109
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.44 E-value=0.0038 Score=57.89 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=38.0
Q ss_pred CCCccccchhHHHHHHhhhh-cC---------CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 180 LDGFVGLNSRIEDLKSLLRL-EL---------HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 180 ~~~~~gr~~~~~~l~~~l~~-~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++.|.+..++.+.+++.. .. ...+-+.++|++|+|||+||+.++.+....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34688998888877766541 11 123458899999999999999999976443
No 110
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.43 E-value=0.0095 Score=52.11 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=33.2
Q ss_pred HHHHHhhh----hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC--CceEEEe
Q 040979 191 EDLKSLLR----LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF--QGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f--~~~~~~~ 239 (292)
..|..+|. -+=... ++-|+|.+|+||||||..++......+ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 45556665 222334 789999999999999999888655432 3466765
No 111
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.43 E-value=0.0066 Score=54.57 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=23.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++|+|.+|+|||||++.+.+.+..+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4588999999999999999998876543
No 112
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.42 E-value=0.0015 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|+|+|+.|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 113
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.40 E-value=0.0023 Score=56.36 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=33.9
Q ss_pred CCCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 178 TDLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 178 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....++|.+..+..+...+... ....+.++|.+|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34456889887555433222211 122388999999999999999999754
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0021 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=23.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 115
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.37 E-value=0.0028 Score=50.02 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998865
No 116
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.37 E-value=0.0034 Score=56.23 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHhhh----h------------------------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 182 GFVGLNSRIEDLKSLLR----L------------------------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~----~------------------------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++|.+..++.+...+. . .......+.++|++|+|||++|+.+++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888877766551 0 011245688999999999999999999763
No 117
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.36 E-value=0.0023 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..|.|.|++|+||||+++.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997653
No 118
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.36 E-value=0.0012 Score=53.36 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999988754444
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.34 E-value=0.0024 Score=51.88 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|.|+.|+|||||++.+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999999876
No 120
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.02 Score=49.80 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=30.4
Q ss_pred cchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 186 LNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+..++.+...+..+. .....++|++|+||||+|..+++..
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445566666666433 6788999999999999999998853
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.33 E-value=0.0026 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++.|+|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.33 E-value=0.0016 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.|+|++|+||||+++.+.+++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 123
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.30 E-value=0.003 Score=56.08 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
......|.++|++|+||||+++.++..+.-.|
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34466799999999999999999998654333
No 124
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.29 E-value=0.0027 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|.|+.|+||||+++.+.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 125
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.29 E-value=0.0022 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 126
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0028 Score=53.50 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+|+|.|+.|+||||+|+.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999998754
No 127
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0052 Score=49.09 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+|.+.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999997653
No 128
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.27 E-value=0.0052 Score=51.64 Aligned_cols=28 Identities=18% Similarity=-0.006 Sum_probs=24.2
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
......|.|.|++|+||||+|+.+.+++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998765
No 129
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0032 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|++|+||||+|+.+.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 130
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.24 E-value=0.0058 Score=49.56 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...|.|.|+.|+||||+|+.+.+++....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35799999999999999999999875433
No 131
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.24 E-value=0.0024 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 132
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.24 E-value=0.0029 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|.|+|+.|+||||+++.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0037 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.+.|+.|+||||+|+.+.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 134
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.20 E-value=0.0013 Score=54.67 Aligned_cols=36 Identities=17% Similarity=-0.144 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...++.++|..|.||||++..+.++...+-..+..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 457889999999999999999998776543333333
No 135
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.19 E-value=0.0038 Score=50.53 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+|.|.|+.|+||||+|+.+++++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 136
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.19 E-value=0.0048 Score=50.27 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+|.|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987544
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.19 E-value=0.017 Score=50.49 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=35.6
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.....|.+++ .+=....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 53 TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 53 SGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3344555555 33445679999999999999999999876544334556654
No 138
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.18 E-value=0.0036 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.|.|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 139
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.18 E-value=0.0032 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|+.|+||||+|+.+.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 140
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.18 E-value=0.0035 Score=50.58 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+|+|.|+.|+||||+++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998875
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0033 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 142
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.17 E-value=0.0056 Score=50.13 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=29.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+..+..++.. -+..+.+.++|++|+||||+|.++++.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555542 23345799999999999999999998764
No 143
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.01 Score=49.24 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC------CCceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD------FQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~~~ 239 (292)
..|..+|..+-....++.|+|.+|+|||||+..++...... -..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 45556664333446799999999999999999998863221 23556665
No 144
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.17 E-value=0.005 Score=57.40 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=37.0
Q ss_pred CCCCccccchhHHHHHHhhhh-cC---------CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 179 DLDGFVGLNSRIEDLKSLLRL-EL---------HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~-~~---------~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|.+..+..+.++... .. .-.+-+.|+|.+|+||||||+.++....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688998888777765431 11 1123489999999999999999998653
No 145
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0041 Score=50.70 Aligned_cols=28 Identities=36% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.|..|.|||||++.+...+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988654
No 146
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.14 E-value=0.0035 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+++|.|+.|.|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 147
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.14 E-value=0.0042 Score=50.35 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+..+|+|+|+.|+||||+++.+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998864
No 148
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.13 E-value=0.011 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999997643
No 149
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0043 Score=49.23 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....|++.|+.|+||||+++.+...+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998753
No 150
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.13 E-value=0.0036 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|+|+|+.|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999988754
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.13 E-value=0.0027 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|.|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999998763
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.12 E-value=0.0034 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 153
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.12 E-value=0.0028 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..|.|.|+.|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0058 Score=47.32 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+.|+|..|+|||||++.++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999764
No 155
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.12 E-value=0.017 Score=53.11 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=25.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEE
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFM 238 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~ 238 (292)
.++|+|.+|+|||||+..+......++ +.+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 588999999999999999998765444 334443
No 156
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.11 E-value=0.0025 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=18.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|.|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988753
No 157
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.10 E-value=0.0035 Score=51.29 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999988654
No 158
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.10 E-value=0.0037 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|.|.|++|+||||+|+.+.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 159
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0041 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|+.|+||||+|+.+.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 160
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.09 E-value=0.0061 Score=48.34 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~ 238 (292)
..+++|.|..|+|||||+..+...+... +...+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 5689999999999999999999876544 4444443
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.09 E-value=0.0025 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998654
No 162
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.09 E-value=0.0036 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 163
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.07 E-value=0.0066 Score=53.15 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++.++|+|.|-||+||||.+..++--+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 457999999999999999999988866554
No 164
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0035 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 165
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.07 E-value=0.0041 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999764
No 166
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.02 E-value=0.0043 Score=51.08 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.+.|+.|+||||+|+.+++++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999876
No 167
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.01 E-value=0.032 Score=50.96 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++.++|.+|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999866543
No 168
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.01 E-value=0.0047 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.|.|++|+||||+|+.+.+++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 169
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.01 E-value=0.0062 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...++.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998875
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.00 E-value=0.0042 Score=51.12 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+..+|..+-....+++|+|..|+|||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554333456899999999999999999998754
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.98 E-value=0.0046 Score=50.29 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+|+|+|++|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998864
No 172
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.97 E-value=0.005 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.95 E-value=0.042 Score=48.29 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+.+...+.. +.-...+.++|+.|+|||++|+.+++.+.
T Consensus 11 ~~~l~~~i~~-~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 11 FEKLVASYQA-GRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHT-TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 3445544442 22345788999999999999999999764
No 174
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.006 Score=50.70 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.++|..+-....++.|.|.+|+||||||..++......=..++++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444433334578999999999999999988775443323455554
No 175
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.92 E-value=0.026 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.068 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..-++|+|.+|+|||+|+..+.+.+..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhh
Confidence 346799999999999999999997654
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0049 Score=50.04 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.89 E-value=0.0053 Score=49.93 Aligned_cols=28 Identities=18% Similarity=0.295 Sum_probs=24.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...|.|.|+.|+||||+++.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.88 E-value=0.0053 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++|.|+.|+|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 179
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.88 E-value=0.02 Score=52.43 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...+|.++|.+|+||||++..++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876554
No 180
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.87 E-value=0.0078 Score=55.15 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhhhc------------CCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRLE------------LHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..++|.+..++.+...+... ....+-+.++|++|+||||+|+.++..+...|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 35788888777776555210 11245688999999999999999999875443
No 181
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.86 E-value=0.0057 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.86 E-value=0.0067 Score=49.82 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=27.3
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+..++..+-....++.|.|.+|+|||||++.++....
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44444431223357899999999999999999987543
No 183
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.84 E-value=0.016 Score=50.73 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC------CCceEEEeccccccccccHHHHH
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD------FQGKCFMRNVRDESNKKGVVHVR 254 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~ 254 (292)
..+..+|..+-....++.|+|.+|+||||||..++...... -..++|+. ....++...+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~----~e~~~~~~~l~ 159 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID----TEGTFRWERIE 159 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE----SSSCCCHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE----CCCCCCHHHHH
Confidence 45556664333346789999999999999999998865332 23456665 33334444443
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.80 E-value=0.0064 Score=56.69 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++|.+..++.+...+..+ ..+.++|.+|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 35889988877766555432 368899999999999999998865
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.78 E-value=0.0066 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998653
No 186
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.78 E-value=0.0057 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+|+|.|+.|+||||+++.++++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999854
No 187
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.77 E-value=0.0039 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|+|.|..|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.76 E-value=0.0058 Score=49.76 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+++.|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999998654
No 189
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.76 E-value=0.026 Score=56.11 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHhhhhc-----C--CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 182 GFVGLNSRIEDLKSLLRLE-----L--HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~~-----~--~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.++|.+..+..+...+... + .....+.++|.+|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789888888877766531 1 12368899999999999999999997643
No 190
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.76 E-value=0.0047 Score=52.98 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCccccchhHHHHHHhhh--h---------cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 181 DGFVGLNSRIEDLKSLLR--L---------ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~--~---------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.++.|.+..++.+.+.+. . +-.-.+-+.++|++|+|||||++.++....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 346666666666654321 0 001112299999999999999999998754
No 191
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.73 E-value=0.0081 Score=50.39 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+++|.|..|.|||||++.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998865
No 192
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.72 E-value=0.0055 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVV 224 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v 224 (292)
...+++|+|..|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999953
No 193
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.72 E-value=0.0061 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 194
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.71 E-value=0.0083 Score=49.01 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|.|.|+.|+||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998764
No 195
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.70 E-value=0.079 Score=45.84 Aligned_cols=27 Identities=33% Similarity=0.273 Sum_probs=23.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++.++|.+|+||||++..++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999986554
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.69 E-value=0.026 Score=48.50 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC-ceEEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ-GKCFM 238 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~-~~~~~ 238 (292)
....+++|.|.+|+|||||++.++..+...-. .+.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 44679999999999999999999986654322 34444
No 197
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.69 E-value=0.006 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.|.|++|+||||+|+.+.+++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999864
No 198
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.68 E-value=0.0079 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHh
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
+|+|.|+.|+||||+|+.+..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 199
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.66 E-value=0.006 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..|.+.|++|+||||+|+.+.+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.65 E-value=0.0061 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 201
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.64 E-value=0.005 Score=52.12 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.|+|+.|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998653
No 202
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.64 E-value=0.0068 Score=51.16 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|.+.|++|+||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998753
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.62 E-value=0.0091 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.|..|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4578999999999999999999988654
No 204
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0053 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998765
No 205
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.62 E-value=0.053 Score=49.39 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++.++|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999876654
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.61 E-value=0.028 Score=49.88 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.....+|+|+|.+|+|||||+..+...+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999886543
No 207
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.60 E-value=0.034 Score=49.06 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=40.1
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccccccHHHHHHHHHH
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
....|..++. +-....++.|.|.+|+||||||..++......=..+.|+. -.-+...+...++.
T Consensus 32 G~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls 95 (338)
T 4a1f_A 32 GFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALS 95 (338)
T ss_dssp SCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHH
T ss_pred CChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHH
Confidence 3445555553 3345678999999999999999999887554222344443 22344555555544
No 208
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.58 E-value=0.007 Score=49.35 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|..|.|||||++.+...+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998754
No 209
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.57 E-value=0.015 Score=45.43 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++++.|..|.|||||.+.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 556799999999999999999999865
No 210
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.54 E-value=0.021 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999988754
No 211
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.53 E-value=0.011 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.53 E-value=0.017 Score=47.14 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=29.8
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.+.+.+. ......+.|+|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3344444443 2357899999999999999999998876544
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.51 E-value=0.014 Score=49.74 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
-+..++.........+.++|++|+|||++|.++++.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 356666543344678999999999999999999985
No 214
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.51 E-value=0.01 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 215
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.49 E-value=0.009 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 216
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.48 E-value=0.029 Score=51.34 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=53.1
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCC----ceEEEecccccc-ccccHHHHHHHHHHHHhc
Q 040979 189 RIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQ----GKCFMRNVRDES-NKKGVVHVRDEVICEVLE 263 (292)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~----~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~ 263 (292)
.++.+..++..+. ..-++|.|..|+|||+|+..+.++...+-+ .++++. +. ......++.+++...=..
T Consensus 138 GiraID~l~pigr--GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~----iGeR~~Ev~e~~~~~~~~g~~ 211 (465)
T 3vr4_D 138 GISAIDHLNTLVR--GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA----IGITFEEAEFFMEDFRQTGAI 211 (465)
T ss_dssp SCHHHHTTSCCBT--TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE----EEECHHHHHHHHHHHHHHTGG
T ss_pred CceEEeccccccc--CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE----ecCCcHHHHHHHHHHhhcCCc
Confidence 3444444443222 234788999999999999999987654322 233332 22 234556666665443111
Q ss_pred ccc----CCCCCC-cH--------HHHHHHhC---CceEEEEEeC
Q 040979 264 ENL----KIGTSI-IP--------PRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 264 ~~~----~~~~~~-~~--------~~l~~~L~---~kr~LlVLDD 292 (292)
... ...+.. .. -.+.++++ ++.+||++||
T Consensus 212 ~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Ds 256 (465)
T 3vr4_D 212 DRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTD 256 (465)
T ss_dssp GGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 111 112221 11 12345553 6899999997
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.47 E-value=0.0087 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|.|.|+.|+||||+++.+.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.47 E-value=0.027 Score=55.27 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=37.4
Q ss_pred CCccccchhHHHHHHhhhhcC-------CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLEL-------HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~-------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899988888777665321 123479999999999999999999975
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.46 E-value=0.027 Score=49.37 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++++|.+|+||||++..++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999886554
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.46 E-value=0.023 Score=50.04 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....+++++|..|+||||+++.++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886543
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.45 E-value=0.016 Score=50.42 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++|+|.+|+|||||++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999986543
No 222
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.43 E-value=0.03 Score=45.76 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.....|.|+|.+|+|||||+..+.......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 356889999999999999999998865433
No 223
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.42 E-value=0.01 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|+.|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 224
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.41 E-value=0.0074 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.41 E-value=0.0051 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|..|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3457899999999999999999884
No 226
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.40 E-value=0.033 Score=51.03 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=42.4
Q ss_pred ccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEeccccccccccHHHHHHHHHH
Q 040979 185 GLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDESNKKGVVHVRDEVIC 259 (292)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~il~ 259 (292)
|.......|..++ .+=....++.|.|.+|+||||||..++....... ..++|+. . .-+...+...++.
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l--E~~~~~l~~R~~~ 250 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L--EMPAAQLTLRMMC 250 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S--SSCHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C--CCCHHHHHHHHHH
Confidence 3344445566666 3334567899999999999999999998765332 3455554 2 2334455555543
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.38 E-value=0.009 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....++.|.|.+|+|||+||..++.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34578999999999999999987754
No 228
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.38 E-value=0.011 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.|.|.|+.|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 229
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.37 E-value=0.01 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|+|.|++|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 230
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.34 E-value=0.012 Score=48.96 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.+.|+.|+||||+|+.+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.34 E-value=0.01 Score=49.16 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 357999999999999999999988754
No 232
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.32 E-value=0.078 Score=48.81 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=36.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEecccccc-ccccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMRNVRDES-NKKGVVHVRDEVICE 260 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~-~~~~~~~~~~~il~~ 260 (292)
..-++|.|.+|+|||+|+..+.+.+.... +.+++.. +. ......++.+++.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~----iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG----VGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE----ESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE----CCCcchHHHHHHHHhhhc
Confidence 35689999999999999999999864433 3444443 33 244566666666654
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.31 E-value=0.04 Score=50.65 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=36.1
Q ss_pred ccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEe
Q 040979 185 GLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMR 239 (292)
Q Consensus 185 gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~ 239 (292)
|.......|..++ .+=....++.|.|.+|+|||||+..++..+.... ..++|+.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3334444566655 2334567999999999999999999998765322 2455554
No 234
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.30 E-value=0.035 Score=46.12 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.30 E-value=0.012 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|++|+||||+|+.+.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 236
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.27 E-value=0.015 Score=50.99 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.|..|+|||||++.+...+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999887665
No 237
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.26 E-value=0.0067 Score=52.45 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988653
No 238
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.25 E-value=0.014 Score=50.81 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999988765
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.21 E-value=0.034 Score=48.52 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...|..+|..+-....++.|+|.+|+|||+||..++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566664333456899999999999999999988763
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.20 E-value=0.019 Score=54.18 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=34.9
Q ss_pred CccccchhHHHHHHhhhh----cCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 182 GFVGLNSRIEDLKSLLRL----ELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 182 ~~~gr~~~~~~l~~~l~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.++|.+.-...+.+.+.. .......+.++|++|+||||||+.++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 367776666655443321 1224668999999999999999999997643
No 241
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.17 E-value=0.012 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|.|+|+.|+||||||+.+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999875
No 242
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.15 E-value=0.042 Score=50.38 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=36.9
Q ss_pred cccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 184 VGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 184 ~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
.|.......|.+++. +=....++.|.|.+|+||||||..++......=..++++
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 344444556666663 445567899999999999999999998765432234444
No 243
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.15 E-value=0.06 Score=44.18 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=26.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC-CCc
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD-FQG 234 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~ 234 (292)
...|.+.|+.|+||||+++.+.+.+... ++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 4688999999999999999999987654 443
No 244
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.14 E-value=0.029 Score=48.52 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 457889999999999999999999876654
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.13 E-value=0.014 Score=46.44 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987643
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.13 E-value=0.023 Score=49.41 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++++|..|+||||+++.++..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988654
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.13 E-value=0.039 Score=49.89 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|..+|..+-....++.|+|.+|+|||||+..++-.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 44566666533345679999999999999999987643
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.13 E-value=0.02 Score=48.67 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|+|+.|.|||||.+.+...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3467999999999999999999887543
No 249
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.12 E-value=0.058 Score=49.85 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=36.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEeccccccc-cccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMRNVRDESN-KKGVVHVRDEVIC 259 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~-~~~~~~~~~~il~ 259 (292)
..-++|.|.+|+|||+|+..+.+.+... -+.++++. +.+ .....++.+++.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~----iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE----ESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE----cccCcHHHHHHHHhhhc
Confidence 3468999999999999999999986543 35555553 332 3456666666654
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.10 E-value=0.013 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++++|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998765
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.07 E-value=0.008 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=17.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHH-HHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVF-HQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~-~~~ 228 (292)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999998 643
No 252
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.05 E-value=0.016 Score=51.53 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=29.5
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+..+|..+-....++.|+|.+|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555565334557899999999999999999999875
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.04 E-value=0.013 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+++|+|..|+|||||.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998865
No 254
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.04 E-value=0.031 Score=59.97 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 191 EDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
..+..+|. .+-...+.+-|+|++|+|||+||.++......+=..++|+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34666665 33345789999999999999999999887655434567775
No 255
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.03 E-value=0.023 Score=51.00 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=25.3
Q ss_pred hcCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 199 LELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 199 ~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+-...+.++|+|++|+|||||++.++...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344556799999999999999999999764
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.03 E-value=0.017 Score=48.08 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|+|.|+.|+||||+++.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999988754
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.03 E-value=0.015 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 258
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.02 E-value=0.033 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..++.+.|.||+|||||+..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998766
No 259
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.011 Score=46.96 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.+++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999886543
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.00 E-value=0.019 Score=56.33 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHhhhhcC-------CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRLEL-------HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~~~-------~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458898888887776654211 224578999999999999999999976
No 261
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.98 E-value=0.031 Score=47.17 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=23.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|+|.|.||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578888999999999999999977654
No 262
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.98 E-value=0.011 Score=56.51 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCCccccchhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 179 DLDGFVGLNSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 179 ~~~~~~gr~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....++|.+.-++.+...+..+ ..+.|+|.+|+||||||+.++..+..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3456888887777776666532 47899999999999999999986543
No 263
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.85 E-value=0.034 Score=46.06 Aligned_cols=25 Identities=36% Similarity=0.702 Sum_probs=21.9
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 207 IGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
|+|.|.||+||||+|..++..+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 5668999999999999999987654
No 264
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.82 E-value=0.047 Score=48.41 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++.+.|.||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4468899999999999999999998766
No 265
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.82 E-value=0.012 Score=51.84 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|+|+.|+||||||..+++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999865
No 266
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.79 E-value=0.034 Score=47.65 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=23.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.++|+|.|.||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999876543
No 267
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.78 E-value=0.03 Score=52.29 Aligned_cols=28 Identities=4% Similarity=-0.043 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+|.+.|+.|+||||+|+.+++++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998753
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.75 E-value=0.032 Score=49.70 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|+|..|+|||||++.++..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 467999999999999999999998654
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.75 E-value=0.017 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.. .+++|.|..|.|||||.+.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999998863
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.74 E-value=0.022 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
+|.+.|++|+||+|.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999874
No 271
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.74 E-value=0.062 Score=49.98 Aligned_cols=48 Identities=10% Similarity=-0.032 Sum_probs=34.3
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC-CceEEEe
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF-QGKCFMR 239 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f-~~~~~~~ 239 (292)
..|.+++. +-....++.|.|.+|+||||||..++....... ..++|+.
T Consensus 230 ~~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 230 TGINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTHHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred hhhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34545553 334567899999999999999999998876542 3455654
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.73 E-value=0.017 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|+.|+||||||..+++++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998864
No 273
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.72 E-value=0.014 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|+|+.|.|||||.+.+.-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3457899999999999999998875
No 274
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.71 E-value=0.06 Score=44.62 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=23.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC-CCc
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD-FQG 234 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~ 234 (292)
-.|.+.|.||+||||+|..++...... ++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 447888999999999999999875543 443
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.69 E-value=0.024 Score=49.41 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...++.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.69 E-value=0.015 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..+++|.|..|.|||||.+.++--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 277
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.68 E-value=0.064 Score=49.28 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+.|.|.+|+||||++..+...+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999999999876544
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.023 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...|.|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998864
No 279
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.64 E-value=0.094 Score=42.44 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=23.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...|-|++-.|.||||+|-.+.-+...+=-.+.++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34566666667999999999998755542333444
No 280
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.62 E-value=0.086 Score=46.66 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
....+++.+.|.||+||||+|..++..+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 3446677777999999999999998876544
No 281
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.61 E-value=0.039 Score=50.44 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999876554
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.61 E-value=0.016 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|+|..|.|||||.+.++-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999998875
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.60 E-value=0.039 Score=47.74 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...+++++|.+|+||||++..++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999986654
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.60 E-value=0.031 Score=48.65 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=24.7
Q ss_pred cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 200 ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 200 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.-....+++|+|..|.|||||++.+..-+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34556899999999999999999988754
No 285
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.59 E-value=0.054 Score=50.10 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=30.2
Q ss_pred EEEEEEcCCcccHHHHHH-HHHHHHhCCCCce-EEEeccccccc-cccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIAS-VVFHQISGDFQGK-CFMRNVRDESN-KKGVVHVRDEVIC 259 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~-~v~~~~~~~f~~~-~~~~~~~~~~~-~~~~~~~~~~il~ 259 (292)
.-++|.|.+|+|||+||. .+.++.. -+.. +++. +.+ ......+.+++.+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~----iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVA----IGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEE----CCCcchHHHHHHHHHhh
Confidence 457899999999999964 6666542 3333 3332 222 3455566665554
No 286
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.56 E-value=0.054 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=24.9
Q ss_pred EEEEEE-cCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIW-GMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~-G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
++|.|+ +.||+||||+|..++..+...=..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 577777 7789999999999998766532233444
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.55 E-value=0.038 Score=47.12 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++.|+|.+|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999875543
No 288
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.53 E-value=0.079 Score=42.83 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=26.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.|.+-|.-|+||||.++.+++.+...-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3678899999999999999998876544444443
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.52 E-value=0.017 Score=48.30 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|+|..|.|||||.+.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998864
No 290
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.47 E-value=0.021 Score=47.95 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|+|..|.|||||.+.++-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3467999999999999999999876
No 291
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.45 E-value=0.018 Score=48.99 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++--
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998763
No 292
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.45 E-value=0.066 Score=47.16 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=27.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
...+++.+.|.||+||||+|..++..+...=..+..+
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 3467888899999999999999998776543333333
No 293
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.44 E-value=0.023 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||.+.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998863
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.44 E-value=0.04 Score=51.11 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+++|+|..|+|||||++.++..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 467999999999999999999988654
No 295
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.43 E-value=0.076 Score=46.83 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 201 LHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 201 ~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.....+++|+|.+|+|||||+..+...+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999987543
No 296
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.42 E-value=0.044 Score=51.34 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
...+|.++|++|.||||+|+.+.+.+.-.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356899999999999999999998764433
No 297
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.40 E-value=0.022 Score=56.29 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..+.|.+..++.+.+.+.. +-.....+.++|++|+||||||+.++......|
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4577888777777766541 112346688999999999999999999875543
No 298
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.37 E-value=0.068 Score=44.25 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhC--CCCceE
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISG--DFQGKC 236 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~f~~~~ 236 (292)
.....|.+.|+.|+||||+++.+.+.+.. .++...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34678999999999999999999998754 344433
No 299
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.36 E-value=0.03 Score=42.71 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..|.++|.+|+|||||...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.35 E-value=0.023 Score=48.40 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++--
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998864
No 301
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.34 E-value=0.081 Score=44.16 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=28.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEEe
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFMR 239 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~~ 239 (292)
...|.+.|+.|+||||+++.+.+.+... +..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4689999999999999999999987543 55344443
No 302
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.33 E-value=0.095 Score=48.56 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=35.6
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHH-HHHHHHhCCCCce-EEEeccccccc-cccHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIAS-VVFHQISGDFQGK-CFMRNVRDESN-KKGVVHVRDEVIC 259 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~-~v~~~~~~~f~~~-~~~~~~~~~~~-~~~~~~~~~~il~ 259 (292)
++.+..++-.+. ..-++|.|.+|+|||+||. .+.++.. -+.. +++. +.+ .....++.+++.+
T Consensus 163 iraID~l~Pigr--GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~----IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 163 IKAIDSMIPIGR--GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVA----IGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CHHHHHHSCEET--TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred cccccccccccc--CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEE----cCCCcHHHHHHHHHHHh
Confidence 344444443222 3458899999999999964 6766542 3332 3332 222 3455666666654
No 303
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.31 E-value=0.092 Score=42.78 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=25.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCC
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQ 233 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~ 233 (292)
.-|.+-|.-|+||||+++.+.+.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998876554
No 304
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.31 E-value=0.027 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998874
No 305
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.31 E-value=0.02 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|+|+.|.|||||.+.+.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 356899999999999999998875
No 306
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.29 E-value=0.021 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|+|..|.|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.28 E-value=0.021 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|+|..|.|||||.+.++-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999875
No 308
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.28 E-value=0.021 Score=47.81 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|+|..|.|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999876
No 309
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.27 E-value=0.038 Score=52.08 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...++.|+|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4578999999999999999999998754
No 310
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.26 E-value=0.021 Score=48.64 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|.|..|.|||||.+.++--
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34578999999999999999998763
No 311
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.26 E-value=0.092 Score=46.25 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.2
Q ss_pred cCCCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 200 ELHDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 200 ~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.-....+++|+|.+|+|||||.+.+...+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 345678999999999999999999987543
No 312
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.25 E-value=0.031 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=22.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|.|.|+.|+||||||..++.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999999875
No 313
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.25 E-value=0.095 Score=42.99 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=26.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCC-CCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGD-FQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-f~~~~~~ 238 (292)
..|.+.|..|+||||+++.+.+.+... +..+++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 578999999999999999999987543 4344444
No 314
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.24 E-value=0.063 Score=44.56 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....|.+.|+.|+||||+++.+.+.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999997754
No 315
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.20 E-value=0.065 Score=46.87 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++...|.||+||||+|..++..+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 4677777999999999999998876554
No 316
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.19 E-value=0.086 Score=48.43 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCC----CceEEEeccccccccccHHHHHHHHHHHHhcccc----CCCCCC-c--
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDF----QGKCFMRNVRDESNKKGVVHVRDEVICEVLEENL----KIGTSI-I-- 273 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~-~-- 273 (292)
.-++|.|.+|+|||+|+..++.....+. +.++++. +. .......++.+++...=..... ...+.. .
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iG--ER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA-MG--ITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EE--ECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE-cc--CCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 4567889999999999999998755432 1233332 11 2234566666666543111111 112221 1
Q ss_pred ------HHHHHHHhC---CceEEEEEeC
Q 040979 274 ------PPRIQKRLQ---LMKVLIVLDD 292 (292)
Q Consensus 274 ------~~~l~~~L~---~kr~LlVLDD 292 (292)
.-.+.++++ ++.+||++||
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Ds 257 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTD 257 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 112335554 5899999997
No 317
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.19 E-value=0.074 Score=49.55 Aligned_cols=28 Identities=32% Similarity=0.288 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..++|.|+|.+|+||||++..++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999986554
No 318
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.023 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|..|.|||||.+.++.-+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999988643
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.17 E-value=0.023 Score=47.84 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|+|..|.|||||.+.++--
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998763
No 320
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.17 E-value=0.023 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999998764
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.15 E-value=0.029 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998874
No 322
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.15 E-value=0.033 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.+|.|.|+.|+||||+++.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999764
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.15 E-value=0.023 Score=48.18 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|.|..|.|||||.+.++--
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998763
No 324
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.14 E-value=0.032 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.-.++|.|++|+||||+|+.+.+++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999998875
No 325
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.12 E-value=0.026 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+|+|.|+.|+||||+++.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999988753
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.12 E-value=0.041 Score=42.23 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.|.++|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998873
No 327
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.09 E-value=0.024 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++--
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998763
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.09 E-value=0.022 Score=47.15 Aligned_cols=26 Identities=27% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+|+|.|..|.|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999999998765
No 329
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.06 E-value=0.024 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++--
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999998763
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.06 E-value=0.031 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998863
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.05 E-value=0.021 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||.+.++--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998763
No 332
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.05 E-value=0.036 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..++++|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 333
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.96 E-value=0.027 Score=47.54 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|..|.|||||.+.++--+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987643
No 334
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.94 E-value=0.039 Score=50.06 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 193 LKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 193 l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
+.+.|........+++|+|..|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 4444443334567999999999999999999887
No 335
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.94 E-value=0.034 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 336
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.90 E-value=0.063 Score=49.54 Aligned_cols=29 Identities=21% Similarity=0.096 Sum_probs=24.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDF 232 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f 232 (292)
..+|.++|++|+||||+++.+.+.+...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46789999999999999999998765444
No 337
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.88 E-value=0.029 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|.|..|.|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998863
No 338
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.88 E-value=0.028 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.|.|.|.+|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998763
No 339
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.88 E-value=0.028 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...+++|+|..|.|||||.+.++--
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999998763
No 340
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.87 E-value=0.067 Score=47.75 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCeEEEEEEc-CCcccHHHHHHHHHHHHhCC
Q 040979 202 HDVRVIGIWG-MGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 202 ~~~~~i~I~G-~gGiGKTtLa~~v~~~~~~~ 231 (292)
...++|+|++ .||+||||+|..++..+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC
Confidence 4578888884 99999999999999876543
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.84 E-value=0.088 Score=55.75 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=38.6
Q ss_pred ccchhHHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 185 GLNSRIEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 185 gr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+......+|..+|. .+-....++.|.|.+|+||||||..++......=..+.|+.
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33444556776665 33345689999999999999999999987654333456664
No 342
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.83 E-value=0.16 Score=47.01 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=36.3
Q ss_pred HHHHHHhhhhcCCCeEEEEEEcCCcccHHHHH-HHHHHHHhC------CCCc-eEEEeccccccc-cccHHHHHHHHHH
Q 040979 190 IEDLKSLLRLELHDVRVIGIWGMGGIGKTTIA-SVVFHQISG------DFQG-KCFMRNVRDESN-KKGVVHVRDEVIC 259 (292)
Q Consensus 190 ~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~------~f~~-~~~~~~~~~~~~-~~~~~~~~~~il~ 259 (292)
++.+..++-.+ ...-++|.|..|+|||+|| ..+.++... +-+. ++++. +.+ ......+.+++.+
T Consensus 150 iraID~l~Pig--rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~----IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 150 IKAVDSLVPIG--RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA----IGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp CHHHHHHSCCB--TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred ceeeccccccc--cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE----CCCCcHHHHHHHHHHHh
Confidence 34444444322 2345789999999999995 567775541 2343 33333 332 3455566666654
No 343
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.83 E-value=0.028 Score=51.36 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+|.++|.+|+||||++..++..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988654
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.80 E-value=0.037 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999874
No 345
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.79 E-value=0.042 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..-.|.++|.+|+|||||...+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345678999999999999988886
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.76 E-value=0.11 Score=55.82 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=40.3
Q ss_pred cccchhHHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 184 VGLNSRIEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 184 ~gr~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.......|..+|. .+=...+++.|+|.+|+||||||..++......=..++|+.
T Consensus 362 ~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 362 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred ceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445556777665 23345689999999999999999999987665434567775
No 347
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.76 E-value=0.033 Score=44.03 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
-|.|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 348
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.75 E-value=0.11 Score=42.15 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=23.8
Q ss_pred EEEEE-cCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 206 VIGIW-GMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 206 ~i~I~-G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
+|.|+ +.||+||||+|..++..+...- .+..+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 45554 8899999999999999876554 44444
No 349
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.71 E-value=0.049 Score=42.86 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|+++|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999886
No 350
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.70 E-value=0.11 Score=47.60 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
.-++|.|.+|+|||+|+..++++..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3568899999999999999988754
No 351
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.68 E-value=0.094 Score=43.32 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=23.9
Q ss_pred CeEEEEEE-cCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIW-GMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~-G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++|+|+ +.||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 35678777 568999999999999987765
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.66 E-value=0.042 Score=42.06 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..-|.++|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998873
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.041 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....|.++|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998763
No 354
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.58 E-value=1.3 Score=37.75 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=23.6
Q ss_pred cchHHHHHHHhhcceEEEEEccCCcCchhh
Q 040979 44 EISPAFSNAIQNSDISIVIFSKDYASSKWC 73 (292)
Q Consensus 44 ~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc 73 (292)
....++.+.+++++++|.|+.-.-..+..+
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~ 41 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRN 41 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCC
Confidence 455788999999999999998766555544
No 355
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.56 E-value=0.044 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
--|.++|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998873
No 356
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.55 E-value=0.044 Score=47.84 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...++.|.|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999998864
No 357
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.51 E-value=0.028 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|+|..|.|||||++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4467899999999999999998875
No 358
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.51 E-value=0.14 Score=49.00 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=31.8
Q ss_pred chhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 187 NSRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
+.+.+.+...+. .+...|.|++|+|||+++..+...+...-...+.++
T Consensus 183 ~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344444555443 246789999999999999888876554333455555
No 359
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.49 E-value=0.074 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.027 Sum_probs=20.4
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.++.++|..|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 477899999999999997777654
No 360
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.036 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+++|.|..|.|||||.+.++--.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999988643
No 361
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.48 E-value=0.046 Score=42.08 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.|.++|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998863
No 362
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.47 E-value=0.072 Score=43.35 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....+|+|+||+|+||+|+|..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999987755
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.47 E-value=0.066 Score=47.89 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
....+++|+|..|.|||||.+.+...+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3457899999999999999999988554
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.46 E-value=0.047 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
-.|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988863
No 365
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.41 E-value=0.11 Score=55.03 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=38.7
Q ss_pred cchhHHHHHHhhh-hcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 186 LNSRIEDLKSLLR-LELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 186 r~~~~~~l~~~l~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.......|..+|. .+=...+++.|+|.+|+||||||..++......=..++|+.
T Consensus 364 isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3344456666665 23345689999999999999999999887554445677775
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.40 E-value=0.047 Score=48.60 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...++|+|..|.|||||++.++...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999988754
No 367
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.40 E-value=0.14 Score=49.27 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=34.6
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHH-HhCCCCceEEEeccccccccccHHHHHHHH
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQ-ISGDFQGKCFMRNVRDESNKKGVVHVRDEV 257 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 257 (292)
.+.+++...|.. ..+..|+|++|+|||+...++..+ ++.. ..+.++ ...+..+..+...+
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~----a~TN~AvD~i~erL 253 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCC----APSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE----ESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEE----cCchHHHHHHHHHH
Confidence 455566665641 236789999999999766655443 4333 346665 22233444444444
No 368
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.049 Score=41.79 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 369
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.38 E-value=0.049 Score=41.87 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
--|.++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998874
No 370
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.37 E-value=0.063 Score=51.30 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|.+.|+.|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999863
No 371
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.37 E-value=0.085 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=19.7
Q ss_pred eEEEEEEcCCcccHHHHHH-HHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIAS-VVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~-~v~~~~ 228 (292)
..-++|.|.+|+|||+||. .+.++.
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh
Confidence 3457899999999999964 666654
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.36 E-value=0.048 Score=43.02 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.5
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
+.+|+|..|.|||||..+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999875
No 373
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.34 E-value=0.048 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998873
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.34 E-value=0.067 Score=41.36 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45689999999999999998875
No 375
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.33 E-value=0.044 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 3457899999999999999999886
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.29 E-value=0.022 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....|.|.|..|+||||+++.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988765
No 377
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.28 E-value=0.065 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|.|.|++|+||||+|+.+.+++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999999764
No 378
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.27 E-value=0.049 Score=41.94 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.6
Q ss_pred EEEEEEcCCcccHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~ 225 (292)
--|.++|.+|+|||||...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999885
No 379
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.27 E-value=0.053 Score=41.51 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEcCCcccHHHHHHHHHHH
Q 040979 207 IGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (292)
|.++|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 380
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.26 E-value=0.097 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...+|.+.|++|+||||+|+.+..++.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999998754
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.057 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....|.++|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.26 E-value=0.047 Score=48.68 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|+|..|.|||||.+.+.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3457899999999999999998876
No 383
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.25 E-value=0.039 Score=47.63 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....+++|+|..|.|||||.+.++.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34578999999999999999998864
No 384
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.23 E-value=0.15 Score=44.65 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+++.+.|.||+||||+|..++..+...
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 35667778999999999999999877654
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.21 E-value=0.076 Score=41.22 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....|.++|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998874
No 386
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.20 E-value=0.049 Score=42.63 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998863
No 387
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.19 E-value=0.055 Score=41.50 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
--|.++|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999886
No 388
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.18 E-value=0.11 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
...+++|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 389
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.052 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
-.|.++|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999886
No 390
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.16 E-value=0.079 Score=47.08 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
..+++|+|+.|.|||||.+.+...+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45999999999999999999988553
No 391
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.15 E-value=0.056 Score=41.94 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998873
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.15 E-value=0.055 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.++|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999886
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.13 E-value=0.048 Score=41.86 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
-|.++|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998754
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.08 E-value=0.077 Score=41.23 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|.++|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998876
No 395
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.07 E-value=0.054 Score=48.16 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|.|+.|.|||||.+.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999886
No 396
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.07 E-value=0.057 Score=42.75 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999988776
No 397
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.04 E-value=0.053 Score=42.24 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998873
No 398
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.04 E-value=0.053 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3457899999999999999999886
No 399
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.03 E-value=0.24 Score=44.38 Aligned_cols=28 Identities=29% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCeEEEEEE-cCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIW-GMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~-G~gGiGKTtLa~~v~~~~~ 229 (292)
...++|+|+ |.||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 447788887 8899999999999998775
No 400
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.99 E-value=0.065 Score=44.32 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+|.|.|+.|+||||+|+.+++++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998864
No 401
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.98 E-value=0.054 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 3457899999999999999999886
No 402
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.98 E-value=0.059 Score=41.88 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|.++|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999876
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.98 E-value=0.06 Score=42.52 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456889999999999999777654
No 404
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.97 E-value=0.06 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999988863
No 405
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.95 E-value=0.062 Score=41.35 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|.++|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999876
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.95 E-value=0.062 Score=42.07 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..-.|.|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556899999999999999998874
No 407
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.94 E-value=0.055 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 3457899999999999999999886
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.94 E-value=0.15 Score=42.90 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCeEEEEEE-cCCcccHHHHHHHHHHHHh
Q 040979 202 HDVRVIGIW-GMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 202 ~~~~~i~I~-G~gGiGKTtLa~~v~~~~~ 229 (292)
...++|+|+ +.||+||||+|..++..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 346788775 7889999999999999887
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.91 E-value=0.062 Score=42.13 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
--|.++|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999873
No 410
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.91 E-value=0.035 Score=49.48 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
....++|+|..|.|||||++.+...+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998753
No 411
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.89 E-value=0.2 Score=44.37 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHh
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQIS 229 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~ 229 (292)
...++...|.||+||||+|..++..+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 346667779999999999999998776
No 412
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.89 E-value=0.048 Score=53.68 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=34.9
Q ss_pred CCccccchhHHHHHHhhhh-----------cCCCeEEEEEEcCCcccHHHHHHHHHHHH
Q 040979 181 DGFVGLNSRIEDLKSLLRL-----------ELHDVRVIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 181 ~~~~gr~~~~~~l~~~l~~-----------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
..+.|.+..++.+.+.+.. +-...+-+.++|++|+|||.||++++++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 4566777777777665431 11234568899999999999999999864
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.89 E-value=0.061 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..|.++|.+|+|||||...+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999886
No 414
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.87 E-value=0.064 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999887
No 415
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.87 E-value=0.058 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3457899999999999999999886
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.84 E-value=0.065 Score=41.89 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
--|.++|.+|+|||||...+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999998876
No 417
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.83 E-value=0.087 Score=40.41 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
--|.++|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4588999999999999999876
No 418
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.83 E-value=0.11 Score=46.43 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=25.2
Q ss_pred EEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
+++.+.|.||+||||+|..++..+...=..+..+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllv 36 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLA 36 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEE
Confidence 5778889999999999999988665442233333
No 419
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.83 E-value=0.14 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...-.|+++|.+|+|||||...+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34677899999999999999998863
No 420
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.82 E-value=0.048 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|..|.|||||.+.++-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 3456899999999999999999886
No 421
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.82 E-value=0.061 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...+++|.|..|.|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 356899999999999999999886
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.82 E-value=0.066 Score=41.84 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|.++|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999998863
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.81 E-value=0.066 Score=42.43 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998873
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.81 E-value=0.064 Score=42.05 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.|.|+|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998873
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.78 E-value=0.14 Score=46.58 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
....+++|+|+.|.|||||.+.+...+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34578999999999999999999987644
No 426
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.77 E-value=0.24 Score=45.86 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=36.1
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHH-HHHHHHHhCCCCc-eEEEeccccccc-cccHHHHHHHHHH
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIA-SVVFHQISGDFQG-KCFMRNVRDESN-KKGVVHVRDEVIC 259 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~~f~~-~~~~~~~~~~~~-~~~~~~~~~~il~ 259 (292)
..++.+..++-.+. ..-++|.|-.|+|||+|+ ..+.++- +-+. ++++. +.+ .....++.+++..
T Consensus 148 TGikaID~l~Pigr--GQR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~----IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 148 TGYKAVDSMIPIGR--GQRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVA----IGQKASTISNVVRKLEE 214 (513)
T ss_dssp CSCHHHHHHSCCBT--TCBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred cceeeecccccccc--CCEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEE----ecCChHHHHHHHHHHhh
Confidence 33445554443322 345789999999999996 4666642 2333 33443 332 3455566665543
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.76 E-value=0.044 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|.|||||.+.++-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3457899999999999999999886
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.73 E-value=0.067 Score=41.46 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
-.|.|+|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999886
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.73 E-value=0.069 Score=41.62 Aligned_cols=22 Identities=23% Similarity=0.142 Sum_probs=19.5
Q ss_pred EEEEEEcCCcccHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
--|.++|.+|+|||||...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998876
No 430
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.73 E-value=0.069 Score=41.59 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.++|.+|+|||||...+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999886
No 431
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.70 E-value=0.068 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|.|+|.+|+|||||...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999875
No 432
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.70 E-value=0.086 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEEcCCcccHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~ 225 (292)
.++++.|..|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999998
No 433
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.70 E-value=0.06 Score=41.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44688999999999999998875
No 434
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.67 E-value=0.069 Score=42.25 Aligned_cols=24 Identities=17% Similarity=0.226 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998874
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.07 Score=42.46 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998873
No 436
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.64 E-value=0.07 Score=41.68 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|.++|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999885
No 437
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.64 E-value=0.072 Score=41.42 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.|.++|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998863
No 438
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.63 E-value=0.063 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.|.++|.+|+|||||...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999876
No 439
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.63 E-value=0.077 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..--|.|+|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998865
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.60 E-value=0.15 Score=43.15 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.....|.++|.+|+|||||...++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34667899999999999999998863
No 441
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.58 E-value=0.097 Score=41.17 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.....|.++|.+|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999998775
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.58 E-value=0.073 Score=42.48 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|.|+|.+|+|||||...+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999876
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.55 E-value=0.098 Score=41.79 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999998873
No 444
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.51 E-value=0.045 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....++|+|..|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999987654
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.079 Score=41.97 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998874
No 446
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.49 E-value=0.15 Score=48.33 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..+++.+.|.||+||||+|..++..+...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~ 35 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ 35 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC
Confidence 45788889999999999999999876544
No 447
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=92.47 E-value=0.19 Score=42.85 Aligned_cols=27 Identities=37% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEEE-cCCcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIW-GMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~-G~gGiGKTtLa~~v~~~~~~~ 231 (292)
++|.|+ +.||+||||+|..++..+...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~ 32 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYG 32 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 567776 688999999999999876654
No 448
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.45 E-value=0.075 Score=42.53 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...-|.|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567899999999999999998873
No 449
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.44 E-value=0.069 Score=42.08 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|.++|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998874
No 450
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.42 E-value=0.057 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCcccHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVF 225 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~ 225 (292)
..-.|.++|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999874
No 451
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.076 Score=42.14 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998873
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.41 E-value=0.076 Score=42.93 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
..--|.++|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998873
No 453
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.40 E-value=0.08 Score=41.85 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 45688999999999999999886
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.39 E-value=0.079 Score=42.77 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|.++|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998873
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.37 E-value=0.081 Score=41.83 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 556899999999999999998873
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.35 E-value=0.078 Score=42.04 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45689999999999999999887
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.35 E-value=0.082 Score=41.94 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998873
No 458
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.34 E-value=0.072 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....+++|.|+.|+|||||.+.++-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 3467899999999999999999875
No 459
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.32 E-value=0.11 Score=42.81 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
...|.+.|+.|+||||+++.+.+++..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468899999999999999999998765
No 460
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.08 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998763
No 461
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.28 E-value=0.085 Score=41.65 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998873
No 462
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.28 E-value=0.1 Score=43.22 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|+|+|.+|+|||||...+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 457789999999999999999886
No 463
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.26 E-value=0.086 Score=41.75 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45688999999999999999886
No 464
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.25 E-value=0.13 Score=43.21 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=23.9
Q ss_pred CeEEEEEE-cCCcccHHHHHHHHHHHHhCC
Q 040979 203 DVRVIGIW-GMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 203 ~~~~i~I~-G~gGiGKTtLa~~v~~~~~~~ 231 (292)
..++|+|+ +.||+||||+|..++..+...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 34 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL 34 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 45788887 788999999999999876654
No 465
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.25 E-value=0.086 Score=42.05 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998875
No 466
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.24 E-value=0.064 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|.++|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998864
No 467
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.21 E-value=0.066 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999764
No 468
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.088 Score=41.53 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.-.|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998873
No 469
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.20 E-value=0.18 Score=47.85 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCC
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 231 (292)
.+++.|.|.+|+||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3688899999999999999998865543
No 470
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.19 E-value=0.087 Score=41.57 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|.++|.+|+|||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46789999999999999999876
No 471
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.18 E-value=0.037 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHHH
Q 040979 206 VIGIWGMGGIGKTTIASVVFHQI 228 (292)
Q Consensus 206 ~i~I~G~gGiGKTtLa~~v~~~~ 228 (292)
.+.++|.+|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999988753
No 472
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.17 E-value=0.088 Score=42.02 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...-|.|+|.+|+|||||...+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 356789999999999999999876
No 473
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.11 E-value=0.099 Score=42.82 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
+.-.||++|.-|+||||+++.+.+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998765
No 474
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.09 E-value=0.088 Score=46.63 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=28.2
Q ss_pred HHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 191 EDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 191 ~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
..+..++. -.....++|.|..|+|||||.+.+......
T Consensus 60 ~ald~ll~--i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 60 RAIDGLLT--CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp HHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEeeee--ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444433 234568999999999999999999997543
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.05 E-value=0.1 Score=41.41 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.3
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+-+.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456889999999999999999884
No 476
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.01 E-value=0.11 Score=41.12 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.....|.|+|.+|+|||||...+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999998875
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.98 E-value=0.089 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999876
No 478
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.95 E-value=0.11 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998763
No 479
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.92 E-value=0.18 Score=41.00 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.5
Q ss_pred EEEEEEcC-CcccHHHHHHHHHHHHhCC
Q 040979 205 RVIGIWGM-GGIGKTTIASVVFHQISGD 231 (292)
Q Consensus 205 ~~i~I~G~-gGiGKTtLa~~v~~~~~~~ 231 (292)
++|.|.|. ||+||||+|..++..++..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46777764 8999999999999876543
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.91 E-value=0.19 Score=47.03 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhC
Q 040979 192 DLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 192 ~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~ 230 (292)
.+..+|..+-....+++|.|..|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344555433344679999999999999999999986544
No 481
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.89 E-value=0.3 Score=48.15 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEe
Q 040979 188 SRIEDLKSLLRLELHDVRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMR 239 (292)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~ 239 (292)
.+.+.+...+. .++..|.|++|+|||+++..+...+...-...+.++
T Consensus 360 ~Q~~Av~~~l~-----~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 360 SQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp HHHHHHHHHHT-----SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHhcc-----CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 34444554443 246789999999999999888876554323345554
No 482
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.86 E-value=0.11 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999998873
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.096 Score=42.13 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..-|.++|.+|+|||||...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35689999999999999998886
No 484
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.84 E-value=0.37 Score=41.10 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEEc---CCcccHHHHHHHHHHHHhC
Q 040979 204 VRVIGIWG---MGGIGKTTIASVVFHQISG 230 (292)
Q Consensus 204 ~~~i~I~G---~gGiGKTtLa~~v~~~~~~ 230 (292)
.++|.|++ .||+||||+|..++..+..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh
Confidence 34566665 9999999999999987654
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.098 Score=41.41 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.--|.++|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998873
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.83 E-value=0.098 Score=41.91 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.|+|.+|+|||||...+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999886
No 487
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.80 E-value=0.076 Score=42.33 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999987665
No 488
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.77 E-value=0.098 Score=41.68 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.++|.+|+|||||...+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998875
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.76 E-value=0.098 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58899999999999999998853
No 490
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.71 E-value=0.11 Score=41.80 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...|.|+|.+|+|||||...+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999886
No 491
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.70 E-value=0.22 Score=40.85 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=24.2
Q ss_pred EEEEEE-cCCcccHHHHHHHHHHHHhCCCCceEEE
Q 040979 205 RVIGIW-GMGGIGKTTIASVVFHQISGDFQGKCFM 238 (292)
Q Consensus 205 ~~i~I~-G~gGiGKTtLa~~v~~~~~~~f~~~~~~ 238 (292)
++|.|+ +.||+||||+|..++..+...-..+..+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 567776 5789999999999999776542233333
No 492
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.18 Score=39.57 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
...-.|.++|.+|+|||||...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999885
No 493
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.63 E-value=0.35 Score=45.34 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=31.2
Q ss_pred eEEEEEEcCCcccHHHHHHHHHHHHhCCCCceEEEeccccccc-cccHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFHQISGDFQGKCFMRNVRDESN-KKGVVHVRDEV 257 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~i 257 (292)
...++|.|..|+|||+|+..++++.. -+.++++. +.+ .....++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~--~~~~V~~~----iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD--AQVVIYIG----CGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS--CSEEEEEE----CCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC--CCEEEEEE----ecccHHHHHHHHHHH
Confidence 35689999999999999999887632 23445544 333 33444554443
No 494
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.61 E-value=0.13 Score=43.09 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEEcCCcccHHHHHHHHHHH
Q 040979 205 RVIGIWGMGGIGKTTIASVVFHQ 227 (292)
Q Consensus 205 ~~i~I~G~gGiGKTtLa~~v~~~ 227 (292)
.+|+|+|+.|+||||+|+.+..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988765
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.60 E-value=0.11 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.--|.++|.+|+|||||...+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998886
No 496
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.59 E-value=0.1 Score=41.79 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..--|.|+|.+|+|||||...+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 356688999999999999998875
No 497
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.59 E-value=0.11 Score=41.61 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
..-|.++|.+|+|||||...+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999887
No 498
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.56 E-value=0.1 Score=40.98 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCcccHHHHHHHHHH
Q 040979 203 DVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 203 ~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
....|.++|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999875
No 499
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.56 E-value=0.071 Score=41.66 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCcccHHHHHHHHHH
Q 040979 202 HDVRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 202 ~~~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.....|.++|.+|+|||||...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467789999999999999988764
No 500
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.55 E-value=0.097 Score=41.65 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.0
Q ss_pred eEEEEEEcCCcccHHHHHHHHHH
Q 040979 204 VRVIGIWGMGGIGKTTIASVVFH 226 (292)
Q Consensus 204 ~~~i~I~G~gGiGKTtLa~~v~~ 226 (292)
.-.|.|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998864
Done!