BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040980
         (1193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
            From Clostridium Difficile 630 Crystallized With
            Magnesium Formate
 pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
            From Clostridium Difficile 630 Crystallized With
            Magnesium Formate
 pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
            From Clostridium Difficile 630
 pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
            From Clostridium Difficile 630
          Length = 391

 Score = 35.4 bits (80), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 1079 VLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLG 1138
            +L  P     ++W + +L +    C+      +   +H+D   +L K KHI      P+ 
Sbjct: 169  ILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD--IILKKHKHI------PMA 220

Query: 1139 SGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAADVGKR 1185
            S   +  K T+  +  +  F  +   S+  V P + D+K+  D   R
Sbjct: 221  SISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR 267


>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative One Component System Bt4673 From B.
           Thetaiotaomicron
 pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative One Component System Bt4673 From B.
           Thetaiotaomicron
          Length = 758

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 632 LLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPL 683
           L    P T +I Q E  F+ +    + ++    LLA T++GL V+  ++TPL
Sbjct: 213 LFQYFPSTGQIKQTE-AFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL 263


>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt4673 From B.
           Thetaiotaomicron
 pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
           Putative Hybrid Two Component System Bt4673 From B.
           Thetaiotaomicron
          Length = 758

 Score = 32.3 bits (72), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 632 LLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPL 683
           L    P T +I Q E  F+ +    + ++    LLA T++GL V+  ++TPL
Sbjct: 213 LFQYFPSTGQIKQTE-AFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL 263


>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
          Length = 386

 Score = 30.4 bits (67), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 572 VSREVGLASVEDNNCIKISRDNPLHLEVDLV 602
           ++REVG  SV DN  +  +  NPL L  DLV
Sbjct: 162 LAREVGAVSVVDNTFLSPALQNPLALGADLV 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,759,336
Number of Sequences: 62578
Number of extensions: 1265891
Number of successful extensions: 2748
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2745
Number of HSP's gapped (non-prelim): 6
length of query: 1193
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1083
effective length of database: 8,089,757
effective search space: 8761206831
effective search space used: 8761206831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)