BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040980
(1193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QLC7|TPC11_BOVIN Trafficking protein particle complex subunit 11 OS=Bos taurus
GN=TRAPPC11 PE=2 SV=1
Length = 1133
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 280/1128 (24%), Positives = 466/1128 (41%), Gaps = 154/1128 (13%)
Query: 75 GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSD----LDLLKAAIKPRNIKL 130
GILK W+ KH VP++V + D D QW + S+ +++++ +++ RN K+
Sbjct: 79 GILKTGWMNKHLNLVPALVVVFYELD---WDEPQWKEKQSECATRVEIVRQSLQGRNTKV 135
Query: 131 VVIVVNDT--LSDHNDVY-EERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
V+++ L DV ER AL EL K + P+T L + RL + F
Sbjct: 136 AVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVL-PHT-DHLVGYIIRLENAFY 193
Query: 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
E + YY E RR+K+ E + + L +R+ FK+A ++E ++D AL+ Y AY+
Sbjct: 194 EHAQTYYYTEIRRVKSHKEFLNKTTHQL-LFVRHQFKIAFFSELKQDTQNALKNYRTAYN 252
Query: 248 MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
++ E+ T + +EIKT+A +++KI + +AI F +H KK +
Sbjct: 253 LVHELRAHETNI------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306
Query: 308 GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLA 367
G+ E+ F H W+S+QF F +L D A + + T + P +YYQ A
Sbjct: 307 GSAELAFEHAAWMSKQFQAFGDLFDE----AIKLGLTAIQTQN---------PGFYYQQA 353
Query: 368 AHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQF--DRLLEQGDTVSKQPLTDE 425
A+Y +E R L AL E AS + D + + F R QG V L+D
Sbjct: 354 AYYAQE-RKQLAKALCNHE-ASVTYPNPDPLETQAGVLDFYGQRSWRQG--VLSFDLSDP 409
Query: 426 DYTRYVIA----EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDF 481
+ + I + + + I+ LL + + +K RM S QM EY+ D+
Sbjct: 410 EKEKVGILAIQLKERSVVHSEVIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDY 469
Query: 482 NNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTD 541
A +L D V YR EGW TLL +L +CS ++D++ YSLE+
Sbjct: 470 TKALKLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQLKDYITYSLELL--------- 520
Query: 542 VQPFSFKECGPAGPPTLSQREIIHKEVFELVSRE------------VGLASVEDNNCIKI 589
G A Q+ I K + ++ E V A + I +
Sbjct: 521 ---------GRASTLKDDQKSRIEKNLINVLMNESPDPEPDCDILAVKTAQKLWVDRISL 571
Query: 590 SRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQF 649
+ N + V P + FH V V L + P + ++L I F
Sbjct: 572 AGSNVFTIGVQDFVPF---VQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCISF 628
Query: 650 NQSECN-FVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGK-LEC 707
N E N F +I + +D L+ L+ R + K+E GK +E
Sbjct: 629 NNQEYNQFCVIEEA----SKASDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKIEI 684
Query: 708 ISVVAKMGPHFTICC-------RAESPASMEDLPLWKFEDRVETFPTKDPALAFSG---Q 757
SV +G C ++ ++ E L + R P D + + G Q
Sbjct: 685 TSVDLVLGSEAGRCVVLNWQGGGGDAASAQEALQASRSFKRRPRLP--DSEVHWDGIVIQ 742
Query: 758 KATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFS 817
+T + P + V L PAL E + + VTV S H+ K + DVK
Sbjct: 743 ASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQS--HE------KSPIRDVKLTAGLK 794
Query: 818 PRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFG--LVSIPF--LKSGESWSCK 873
P + +A+ + HV L G E +S+ L IP L+ GE
Sbjct: 795 PGQ-DANLTQKTHVTLHGT-------------ELCDESYPALLTDIPIGDLQPGEQLEKA 840
Query: 874 LEIKWHRPKPVMLFVSLGY---SPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFM-LPFR 929
+ ++ M V + Y + + + T K H +++ IE + V +F+ F
Sbjct: 841 VYVRCGTVGSRMFLVYVSYLINTAIEGKETVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900
Query: 930 RDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCS 989
+ + I + ++ L++ P +L IVS +E+ L +D + +RV
Sbjct: 901 HLERVYADIPFLLMTDLLSASPW---ALTIVS----SELQLAPSMTPVDQLESQVDRV-- 951
Query: 990 VQHGGENLSGPSLLMPGEEFKKVFTI-VPKVESSKLGLGT--VCLRWRRDCGIDDHSGSC 1046
+L GE + F + P V + + G+ T + W+R D
Sbjct: 952 ------------VLQTGESASECFCLRCPSVGNVEGGVATGHYVISWKRTSATD----GV 995
Query: 1047 ETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVAD 1106
+ V++ LP V VE PL V+ + P + + E + N+T L+Q+V+ V
Sbjct: 996 PVISTVIT---LPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEP 1052
Query: 1107 AQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRY 1154
+ +F+ SG+ + +LP ++ + Y PL +G QLP + + +R+
Sbjct: 1053 SDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRF 1100
>sp|Q7Z392|TPC11_HUMAN Trafficking protein particle complex subunit 11 OS=Homo sapiens
GN=TRAPPC11 PE=1 SV=2
Length = 1133
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 271/1127 (24%), Positives = 468/1127 (41%), Gaps = 152/1127 (13%)
Query: 75 GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSD----LDLLKAAIKPRNIKL 130
GILK W+ KH VP++V + D D QW + S+ +++++ +++ RN K+
Sbjct: 79 GILKTGWMNKHLNLVPALVVVFYELD---WDEPQWKEKQSECATRVEIVRQSLQGRNTKV 135
Query: 131 VVIVVNDT--LSDHNDVY-EERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
V+++ L DV ER AL EL K + P+T L + RL + F
Sbjct: 136 AVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVL-PHT-DHLVGYIIRLENAFY 193
Query: 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
E + YY E RR+K+ E + + L +R+ FK+A ++E ++D AL+ Y AY+
Sbjct: 194 EHAQTYYYTEIRRVKSHKEFLNKTTHQL-LFVRHQFKIAFFSELKQDTQNALKNYRTAYN 252
Query: 248 MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
++ E+ T + +EIKT+A +++KI + +AI F +H KK +
Sbjct: 253 LVHELRAHETNI------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306
Query: 308 GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLA 367
G+ E+ F H W+S+QF F +L D ++I + A + +P +YYQ A
Sbjct: 307 GSAELSFEHDAWMSKQFQAFGDLFD------EAIKLGLTAIQTQ-------NPGFYYQQA 353
Query: 368 AHYLKEKRSSLEIALSM-SESASELDSSADSVAPSVYIGQF--DRLLEQGDTVSKQPLTD 424
A+Y +E++ ++A ++ + AS + + D + + F R QG + L+D
Sbjct: 354 AYYAQERK---QLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQG--ILSFDLSD 408
Query: 425 EDYTRYVIA----EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDD 480
+ + I + + + I+ LL + + +K RM S QM EY+ D
Sbjct: 409 PEKEKVGILAIQLKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKD 468
Query: 481 FNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGT 540
+ A +L D V YR EGW TLL VL +CS ++D++ YSLE+
Sbjct: 469 YTKALKLLDYVMCDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELL-------- 520
Query: 541 DVQPFSFKECGPAGPPTLSQREIIHKEVFELVSRE------------VGLASVEDNNCIK 588
G A Q+ I K + ++ E V A + I
Sbjct: 521 ----------GRASTLKDDQKSRIEKNLINVLMNESPDPEPDCDILAVKTAQKLWADRIS 570
Query: 589 ISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQ 648
++ N + V P + FH V + L + P + ++L +
Sbjct: 571 LAGSNIFTIGVQDFVPF---VQCKAKFHAPSFHVDVPVQFDIYLKADCPHPIRFSKLCVS 627
Query: 649 FNQSECN-FVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGK-LE 706
FN E N F +I + N+ L+ L+ R L + K+E GK +E
Sbjct: 628 FNNQEYNQFCVIEEA----SKANEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIE 683
Query: 707 CISVVAKMGPHFTICC-------RAESPASMEDLPLWKFEDRVETFPTKDPAL-AFSGQK 758
SV +G C ++ +S E L + R P + + Q
Sbjct: 684 ITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAARSFKRRPKLPDNEVHWDSIIIQA 743
Query: 759 ATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSP 818
+T + P + V L PAL E + + VTV S H+ K + DVK P
Sbjct: 744 STMIISRVPNISVHLLHEPPALTNEMYCLVVTVQS--HE------KTQIRDVKLTAGLKP 795
Query: 819 RETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFG--LVSIPF--LKSGESWSCKL 874
+ +A+ + HV L G E +S+ L IP L GE L
Sbjct: 796 GQ-DANLTQKTHVTLHGT-------------ELCDESYPALLTDIPVGDLHPGEQLEKML 841
Query: 875 EIKWHRPKPVMLFVSLGY---SPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFM-LPFRR 930
++ M V + Y + + + K H +++ IE + V +F+ F
Sbjct: 842 YVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFEH 901
Query: 931 DPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSV 990
+ + I + ++ L++ P +L IVS +E+ L +D + + V
Sbjct: 902 LERVYADIPFLLMTDLLSASPW---ALTIVS----SELQLAPSMTTVDQLESQVDNV--- 951
Query: 991 QHGGENLSGPSLLMPGEEFKKVFTI-VPKVESSKLGLGT--VCLRWRRDCGIDDHSGSCE 1047
+L GE + F + P + + + G+ T + W+R + + E
Sbjct: 952 -----------ILQTGESASECFCLQCPSLGNIEGGVATGHYIISWKR-------TSAME 993
Query: 1048 TEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADA 1107
+ + LP V VE PL V+ + P + + E + N+T L+Q+V+ V +
Sbjct: 994 NIPIITTVITLPHVIVENIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQDVEISVEPS 1053
Query: 1108 QSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRY 1154
+F+ SG+ + +LP ++ + Y PL +G QLP + + +R+
Sbjct: 1054 DAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRF 1100
>sp|Q5ZI89|TPC11_CHICK Trafficking protein particle complex subunit 11 OS=Gallus gallus
GN=TRAPPC11 PE=2 SV=1
Length = 1132
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 266/1125 (23%), Positives = 453/1125 (40%), Gaps = 149/1125 (13%)
Query: 75 GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSD----LDLLKAAIKPRNIKL 130
GILK W+ KH VP++V + D D QW + S+ +++++ +++ RN K+
Sbjct: 79 GILKTGWMNKHLNLVPALVVVFYELD---WDEPQWKEKQSECATRVEIVRQSLQGRNTKV 135
Query: 131 VVIVVNDT--LSDHNDVY-EERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
V+++ L DV ER AL +L K + P+T L + RL + F
Sbjct: 136 AVVLIQKKTPLPPGEDVIASERAAALCNACDLSGKSLFVL-PHT-DHLVGYIIRLENAFY 193
Query: 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
E + YY E RR+K+ E + + L +R+ FK+A ++E ++D AL+ Y AY+
Sbjct: 194 EHAQTYYYTEIRRVKSHKEFLNKTTHQL-LFVRHQFKIAFFSELKQDTQNALKNYRTAYN 252
Query: 248 MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
++ E+ T + +EIKT+A +++KI + +AI F +H KK +
Sbjct: 253 LVHELRAHETNM------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306
Query: 308 GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLA 367
G+ E+ F H W+S+QF Q+ L LT + +Y
Sbjct: 307 GSAELAFEHAAWMSKQF--------------QAFGDLFDEAIKLGLTAIQTQNPGFYYQQ 352
Query: 368 AHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQF--DRLLEQGDTVSKQPLTDE 425
A Y ++R L L +S S + + D + + F R QG T+S L+D
Sbjct: 353 AAYYAQERKQLASMLCNHDS-SVVYPNPDPLETQTGVLDFYGQRPWRQG-TLSFD-LSDP 409
Query: 426 DYTRYVIA----EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDF 481
+ + I + + + I+ LL + + +K RM S QM EY+ D+
Sbjct: 410 EKEKMGILSLQLKERNVLHSELIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYFAKDY 469
Query: 482 NNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTD 541
A +L D V +YR EGW TLL +L +CS ++D++ YSLE+
Sbjct: 470 AKALKLLDYVMCEYRSEGWWTLLTSILTTALKCSYLMAQIKDYITYSLELL--------- 520
Query: 542 VQPFSFKECGPAGPPTLSQREIIHKEVFELVSRE-------VGLASVED-----NNCIKI 589
G A Q+ I K + +++ E A+V+ ++ + +
Sbjct: 521 ---------GRASTLKDDQKSRIEKNLIKVLMNESPDPEPDCDAAAVKASQKLWSDRVSL 571
Query: 590 SRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQF 649
+ N +EV P + F V + L + P + ++L I F
Sbjct: 572 AGSNVFTIEVQDFIPF---VQCKAKFLAPSFHVDVPVQFDIYLRADCPHPIRFSKLCISF 628
Query: 650 NQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSG-KLECI 708
N + N + + +D L+ + L+ R + K+E G K+E
Sbjct: 629 NNQDYNQYCVVEEA---YQKSDILEQSSQGTMCLVPGKTRKFTFKFVAKTEDVGKKIEIT 685
Query: 709 SVVAKMGPHFTICC-------RAESPASMEDLPLWKFEDRVETFPTKDPAL-AFSGQKAT 760
SV +G C ++ +S E L + R P + + + Q +T
Sbjct: 686 SVDLILGSESGRCVILNWRGGGGDAASSQEALQAARSFRRRPKLPDNEVHWDSLAIQAST 745
Query: 761 HVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRE 820
+ P + V L PAL E + + VT+ S + DVK P +
Sbjct: 746 MIISRVPNISVQLRHEPPALTNEMYCLVVTIESHEETVAK--------DVKLTAGLKPGQ 797
Query: 821 TEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFG--LVSIPF--LKSGESWSCKLEI 876
+A+ + V L G + SF L IP L+ GE + I
Sbjct: 798 -DANLTQKTQVTLRG-------------TDTCDDSFPALLPDIPVGDLQPGEKLEKPIYI 843
Query: 877 KWHRPKPVMLFVSLGY---SPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPL 933
+ M V + Y + + + K H +++ IE + V +F+
Sbjct: 844 RCGTVGARMFLVYVSYLINTTVEGKEILCKCHRDETVTIETVFPFDVAIKFVSTKLEH-- 901
Query: 934 LLSRIKPVSDSEQLASLP-LNETSLLIVSAKNCTEVSLQLQ-SVAIDNEDGDSERVCSVQ 991
L R+ A +P L T +L S T V+ QLQ S ++ + D V
Sbjct: 902 -LDRV--------FADIPFLLMTDILSASPWPLTIVTSQLQLSASMTSVDQLESYV---- 948
Query: 992 HGGENLSGPSLLMPGEEFKKVFTIV--PKVESSKLGLGTVCLRWRRDCGIDDHSGSCETE 1049
EN+ +L GE + F + P S + G + W+R S E+
Sbjct: 949 ---ENV----VLQTGESASECFCLRCPPVTNSGGVATGCYIISWKR-------SSPVESV 994
Query: 1050 AWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQS 1109
V + LP V VE PL V + P + + E + N+T L+Q+V+ + + +
Sbjct: 995 PVVSTVITLPHVIVESIPLHVKADLPSFGRVRESLPVRYHLQNKTNLVQDVEVSMEPSDA 1054
Query: 1110 FVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRY 1154
F+ SG+ + +LP ++ + Y PL +G QLP + + +R+
Sbjct: 1055 FMFSGLKQIRLRILPGTQQEVLYNFYPLMAGYQQLPSLHINLLRF 1099
>sp|Q1RLX4|TPC11_DANRE Trafficking protein particle complex subunit 11 OS=Danio rerio
GN=trappc11 PE=2 SV=1
Length = 1132
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 267/1149 (23%), Positives = 476/1149 (41%), Gaps = 159/1149 (13%)
Query: 75 GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQ----VCSDLDLLKAAIKPRNIKL 130
GILK W+ KH VP++V + D + DP QW + + +++++ +++ RN K+
Sbjct: 79 GILKTGWMNKHLNLVPALVVLFYELD--WDDP-QWKEKQSECATKVEIVRTSLQGRNTKV 135
Query: 131 VVIVVNDT--LSDHND-VYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
V+++ L D V ER AL +L K + P+T L + RL + F
Sbjct: 136 AVVLIQKKTPLPPGEDLVASERASALCGACDLSGKSLFVL-PHT-DHLVGYIIRLENAFY 193
Query: 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
E + YY +E RR+K+ E + + L +R+ FK+ ++E ++D AL++Y AY
Sbjct: 194 EHAQTYYYNEIRRVKSHKEFLNKTTHQL-LFVRHQFKMGFFSELKQDTQNALKYYRTAYS 252
Query: 248 MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
++ E+ T + +EIKT+A +++KI + +AI F +H KK +
Sbjct: 253 LVHELRAHETNV------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306
Query: 308 GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLA 367
G+ E+ F H W+S+QF F +L D A + + T + P +YYQ A
Sbjct: 307 GSAELAFEHTAWMSKQFQSFGDLFDE----AIKLGLTAIQTQN---------PGFYYQQA 353
Query: 368 AHYLKEKRSSLEIALSMSE-----SASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPL 422
A+Y +E++ S + L++++ ++ + GQ R QG S P
Sbjct: 354 AYYAQERKQQAGQLCSHEPGVGYPAPDPLETTSGALD---FYGQ--RPWRQGHQ-SIDPP 407
Query: 423 TDEDYTRYVIAEGKRFQDTYE---ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALD 479
E + ++A + +D I+ LL + + +K RM S QM EY+
Sbjct: 408 DSEKEKQGILALQVKERDVLHSELIIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYYHAK 467
Query: 480 DFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSG 539
D+ A +L D V YR E W +LL ++ +CS G V+D++ YS+E+
Sbjct: 468 DYTKALKLLDYVMCDYRTERWWSLLTSIVCTALKCSYLMGQVKDYITYSMELV------- 520
Query: 540 TDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSRE------------VGLASVEDNNCI 587
G A + Q+ I K + +++ E V A ++ +
Sbjct: 521 -----------GRASILSEEQKSRIEKNLIKVLMNEVPEPEPDCDPVSVKAAQSLWSDRV 569
Query: 588 KISRDNPLHLEVDLVSPLRL--VILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQL 645
++ +N ++V P S +FH I +P + V + + P V ++L
Sbjct: 570 SLAGNNEFTIDVQDYVPFVQCKAKFLSPSFH--IDEP---VQLHVYVRADCPHPVRFSKL 624
Query: 646 EIQFNQSECNFVIINAQRPLLAATNDG---LQVHRAESTPLILITNRWLRLTYEIKSEQS 702
+ + E N Q LL G L+ E+ L+ R + K+E
Sbjct: 625 CVSLSNQEYN------QYCLLEDAYKGKDILEPSSQENMCLVPGKTRKYCFNFVAKTEDV 678
Query: 703 GKLECISVVAKM-----GPHFTICCR---AESPASMEDLPLWKFEDRVETFPTKDPAL-A 753
GK I+ V M G + + R ++ +S E L + R P + A
Sbjct: 679 GKKIEITSVGLMLGRETGRYVYLNWRGGWGDAASSHESLQASRSFKRRTRLPEQHVDWDA 738
Query: 754 FSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGG 813
S Q +T + P++ V L PAL E F + VT+ S D ++K+ +K G
Sbjct: 739 VSVQSSTMIISRVPKISVQLTHEPPALTNEMFCMTVTIKSE-EDTVGKDIKLT-AGLKPG 796
Query: 814 GLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPF--LKSGESWS 871
+A+ +S + L G E+ L IP L+ G+
Sbjct: 797 -------QDANLTQSTQITLNG-----------SEVCDDSHPALLPDIPLGDLQPGQKIV 838
Query: 872 CKLEIKWHRPKPVMLFVSLGYS---PLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPF 928
L I+ + + YS + + K H +++ +E + V +F+
Sbjct: 839 KPLYIRCVSTGSRIFLFHVAYSVSATVEGKDITCKCHKDETVTVETVVPFEVAMKFV--- 895
Query: 929 RRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVC 988
S E L + ++ LL++ + + ++L +++E + +
Sbjct: 896 ------------SSKFEHLERVYVDIPFLLMMDILSASPWPIEL----VESEVQLASSMT 939
Query: 989 SVQHGGENLSGPSLLMPGEEFKKVFTIVPKVE--SSKLGLGTVCLRWRRDCGIDDHSGSC 1046
++ + G +L + P V+ +S + G + W+R S
Sbjct: 940 AIDQPQSQVEGVTLQTSECASECFLLKCPPVQNGTSTVASGHYIISWKRK--------ST 991
Query: 1047 ETEAWVV-SKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVA 1105
TE VV + LP V VE PL V E P + + E + N+T L+Q+V+ V
Sbjct: 992 FTETSVVRTVITLPHVMVENIPLYVHAEVPSFGRVRESLPVRYHLENRTGLVQDVEISVE 1051
Query: 1106 DAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRY---SAEFQASN 1162
+ +F+ SG+ + +LP ++ + Y PL +G LP++ + +R+ S++
Sbjct: 1052 PSDAFMFSGLKQVRMRILPGAEQEMLYNFYPLMAGYQVLPQLNINLLRFPNISSQLLRRF 1111
Query: 1163 TASTVFVFP 1171
S +FV P
Sbjct: 1112 LPSRIFVKP 1120
>sp|B2RXC1|TPC11_MOUSE Trafficking protein particle complex subunit 11 OS=Mus musculus
GN=Trappc11 PE=2 SV=1
Length = 1133
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 135/265 (50%), Gaps = 19/265 (7%)
Query: 75 GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSD----LDLLKAAIKPRNIKL 130
G+LK W+ KH VP++V + D D QW + S+ +++++ +++ RN K+
Sbjct: 79 GVLKTGWMNKHLNLVPALVVVFYELD---WDEPQWKEKQSECATRVEIVRQSLQGRNTKV 135
Query: 131 VVIVVNDT--LSDHNDVY-EERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
V+++ L DV ER AL EL K + P+T L + RL + F
Sbjct: 136 AVVLIQKKTPLPPGEDVIASERAAALCNVCELSGKSLFVL-PHT-DHLVGYIIRLENAFY 193
Query: 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
E + YY E RR+K+ E + + L +R+ FK+A ++E ++D AL+ Y AY+
Sbjct: 194 EHAQTYYYTEIRRVKSHKEFLNKTTHQL-LFVRHQFKIAFFSELKQDTQNALKNYRIAYN 252
Query: 248 MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
++ E+ T + +EIKT+A +++KI + +AI F +H KK +
Sbjct: 253 LVHELRAHETNI------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306
Query: 308 GAPEVVFLHWEWLSRQFLVFAELLD 332
G+ E+ F H W+++QF F +L D
Sbjct: 307 GSAELAFEHAAWMAKQFQAFGDLFD 331
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 165/745 (22%), Positives = 288/745 (38%), Gaps = 110/745 (14%)
Query: 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTL 503
I+ LL + + +K RM S QM EY+ D+ A +L D V YR E W TL
Sbjct: 432 IIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTL 491
Query: 504 LWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREI 563
L +L +CS ++D++ YSLE+ G A Q+
Sbjct: 492 LTSILTTALKCSYLMAQLKDYITYSLELL------------------GRASTLKDEQKSR 533
Query: 564 IHKEVFELVSRE------------VGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILA 611
I K + ++ E V A + + ++ N + V P +
Sbjct: 534 IEKNLMNVLMNESPDPEPDCDVLAVKTAQKLWADRVSLAGSNVFQIGVQDFVPF---VQC 590
Query: 612 SVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATND 671
FH V V L + P + ++L + FN N + L A+
Sbjct: 591 KAKFHAPSFHVDVPVEFDVFLKADCPHPIRFSKLCVSFNNQVYNQFCV-----LEEASKA 645
Query: 672 GLQVHRAESTPLILITNRWLRLTYEI--KSEQSGK-LECISVVAKMGPHFTICC------ 722
+ + L+ + +L+++ K+E GK +E SV +G C
Sbjct: 646 SEVLENLTQGKMCLVPGKTRKLSFKFVAKTEDVGKKIEITSVDLFLGSESGRCVVLSWQG 705
Query: 723 -RAESPASMEDLPLWK-FEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPAL 780
++ +S E L + F+ R + + + Q +T + P + V L PAL
Sbjct: 706 GGGDAASSQEALQAARSFKRRPKLAEDEIHWDSVIIQASTMIISRVPNISVHLRHEPPAL 765
Query: 781 VGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPE 840
+ E + + VTV S H+ K + DVK P + +A+ + HV L G
Sbjct: 766 MNEMYCLVVTVQS--HE------KSPIRDVKLTAGLKPGQ-DANLTQKTHVTLHGA---- 812
Query: 841 EEELGPGEIEKIQQSFG--LVSIPF--LKSGESWSCKLEIKWHRPKPVMLFVSLGY---S 893
E +S+ L IP L GE + ++ M V + Y +
Sbjct: 813 ---------ELCDESYPALLTDIPVGDLHPGEQLEKTVYVRCGTVGSRMFLVYVSYLINT 863
Query: 894 PLNNESTAQKVHVHKSLQIEGMAAIAVGHRFM-LPFRRDPLLLSRIKPVSDSEQLASLPL 952
+ + K H ++ IE + V RF+ F + + I + ++ L++ P
Sbjct: 864 TVEGKEIICKCHKDDTVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDVLSASPW 923
Query: 953 NETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKV 1012
+L IVS +E+ L A+D+ + ++V +L GE +
Sbjct: 924 ---ALTIVS----SELQLAPSMTAMDHLESQIDKV--------------VLQTGESASEC 962
Query: 1013 FTI-VPKVESSKLGLGT--VCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLV 1069
F + P + + G+ T + W+R + E+ V + LP V E PL
Sbjct: 963 FCLRCPSAGNIEGGVATGHYIISWKR-------ASVVESIPAVSTVITLPHVIAENIPLH 1015
Query: 1070 VSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHI 1129
V+ + P + + E + N+T L+Q+V+ V + +F+ SG+ + +LP +K
Sbjct: 1016 VNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQE 1075
Query: 1130 LCYKVVPLGSGLLQLPKVTVISVRY 1154
+ Y PL +G QLP + + +R+
Sbjct: 1076 MLYNFYPLMAGYQQLPSLNINLLRF 1100
>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium
discoideum GN=trapcc10-1 PE=3 SV=1
Length = 1442
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 432 IAEGKRFQDTY-EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDG 490
+ K+F Y E+LG ++K Y R S F +A F L +F A+ LF
Sbjct: 695 LQSSKQFTQLYFELLGQIEKL---YIQSNRMRSISRLTFAIANLNFKLKEFQIAENLFKS 751
Query: 491 VANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFV 525
++N Y +E W + + V L C ++ G + D+V
Sbjct: 752 ISNLYSREHWSYIEYAVKTRLSYCQKQLGHLVDYV 786
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 23/82 (28%)
Query: 1104 VADAQSFVLSGVHNDTVFVLPKSKHILCYK-------------VVPLGSGLLQLPKVTVI 1150
VAD+Q +++SG KSKH + ++P+ SG L +PKVT++
Sbjct: 1342 VADSQIWMISG----------KSKHTFSFNSDTVGEKLKFSCGLIPISSGSLPIPKVTLV 1391
Query: 1151 SVRYSAEFQASNTASTVFVFPS 1172
+ S +FV+PS
Sbjct: 1392 GINNSNISYPKTKNEKIFVYPS 1413
>sp|Q3SRF1|NUOH_NITWN NADH-quinone oxidoreductase subunit H OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=nuoH PE=3 SV=1
Length = 356
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 265 LVEIKTIAELLHFKIS------TVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWE 318
L +++ A+++ +++S TVLL G L + QH + L+G P + FL+W
Sbjct: 150 LAALRSAAQMVSYEVSIGFVIITVLLCAGSLNLSAIVEAQHTSGLATLIGLPWLTFLNWY 209
Query: 319 WLS--RQFLVF--AELLDTSSVP 337
WL F+VF + L +T+ P
Sbjct: 210 WLPLLPMFVVFYVSALAETNRPP 232
>sp|Q1QL92|NUOH_NITHX NADH-quinone oxidoreductase subunit H OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=nuoH PE=3 SV=1
Length = 356
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 265 LVEIKTIAELLHFKIS------TVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWE 318
L +++ A+++ +++S TVLL G L + QH L+G P + FL+W
Sbjct: 150 LAALRSAAQMVSYEVSIGFVFITVLLCAGSLNLSAIVEAQHVRGLGSLIGLPWLTFLNWY 209
Query: 319 WLS--RQFLVF--AELLDTSSVP 337
WL F+VF + L +T+ P
Sbjct: 210 WLPLLPMFVVFYVSALAETNRPP 232
>sp|Q74LB3|ACPS_LACJO Holo-[acyl-carrier-protein] synthase OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=acpS PE=3 SV=1
Length = 119
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 401 SVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKA 460
SV + + +++E+GD +K+ LT +++ +Y +GKR E LG ES+
Sbjct: 9 SVEVERMKKIVEKGDKFAKRVLTPKEFEQYQQLKGKR---KVEYLGGRFSLKESFSKAMG 65
Query: 461 RRMGSFCGFQ 470
+G + GFQ
Sbjct: 66 TGLGKYVGFQ 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,449,542
Number of Sequences: 539616
Number of extensions: 18665772
Number of successful extensions: 44098
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 44047
Number of HSP's gapped (non-prelim): 28
length of query: 1193
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1064
effective length of database: 121,958,995
effective search space: 129764370680
effective search space used: 129764370680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)