Query 040980
Match_columns 1193
No_of_seqs 233 out of 319
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4386 Uncharacterized conser 100.0 3.9E-71 8.6E-76 614.9 -3.8 763 321-1177 2-806 (809)
2 PF07919 Gryzun: Gryzun, putat 100.0 5.6E-56 1.2E-60 549.1 57.3 520 595-1151 1-554 (554)
3 PF11817 Foie-gras_1: Foie gra 100.0 2.5E-50 5.5E-55 446.1 27.1 240 264-533 1-246 (247)
4 KOG2625 Uncharacterized conser 100.0 1.1E-36 2.4E-41 309.4 7.6 325 777-1170 9-348 (348)
5 PF06159 DUF974: Protein of un 99.8 1.2E-17 2.6E-22 184.3 24.0 215 775-1042 6-240 (249)
6 KOG1931 Putative transmembrane 99.5 6.3E-11 1.4E-15 145.2 42.1 347 175-573 171-564 (1156)
7 KOG4386 Uncharacterized conser 99.3 1E-12 2.2E-17 149.2 7.5 461 143-795 4-487 (809)
8 PF08626 TRAPPC9-Trs120: Trans 99.1 3.5E-06 7.7E-11 113.1 52.7 615 444-1135 444-1184(1185)
9 PF12742 Gryzun-like: Gryzun, 98.7 2.7E-08 5.9E-13 81.8 4.8 55 1091-1149 3-57 (57)
10 PF12584 TRAPPC10: Trafficking 98.5 1E-06 2.2E-11 90.3 11.9 79 1075-1153 24-114 (147)
11 PF12735 Trs65: TRAPP traffick 98.0 0.00049 1.1E-08 79.1 20.0 196 968-1169 8-306 (306)
12 PF14938 SNAP: Soluble NSF att 96.2 0.035 7.5E-07 63.4 11.7 96 440-535 89-185 (282)
13 KOG1840 Kinesin light chain [C 95.9 1.9 4.2E-05 52.9 25.3 233 216-532 198-436 (508)
14 PF13424 TPR_12: Tetratricopep 94.3 0.3 6.6E-06 43.7 9.3 69 464-532 4-73 (78)
15 KOG1586 Protein required for f 94.1 0.2 4.3E-06 54.3 8.5 92 441-532 89-181 (288)
16 PF05753 TRAP_beta: Translocon 93.1 0.38 8.3E-06 51.1 8.7 100 1074-1173 30-138 (181)
17 KOG1953 Targeting complex (TRA 92.5 20 0.00044 46.4 23.3 244 500-796 557-841 (1235)
18 PF00927 Transglut_C: Transglu 91.5 0.55 1.2E-05 45.3 7.0 74 1070-1144 3-84 (107)
19 PF13424 TPR_12: Tetratricopep 90.3 1.2 2.5E-05 39.9 7.5 56 442-497 22-78 (78)
20 PF14938 SNAP: Soluble NSF att 90.0 7.4 0.00016 44.4 15.6 94 439-532 129-223 (282)
21 PF07919 Gryzun: Gryzun, putat 89.7 18 0.00038 45.4 20.1 194 952-1145 25-276 (554)
22 PF06159 DUF974: Protein of un 88.7 41 0.00089 37.8 19.8 176 948-1139 8-210 (249)
23 COG2956 Predicted N-acetylgluc 87.5 3.1 6.8E-05 47.4 9.7 78 444-532 199-276 (389)
24 PF13432 TPR_16: Tetratricopep 87.1 1.5 3.3E-05 37.7 5.7 58 469-532 1-58 (65)
25 PF07705 CARDB: CARDB; InterP 86.5 4 8.7E-05 38.2 8.9 73 1067-1143 3-78 (101)
26 PF12862 Apc5: Anaphase-promot 86.3 5.9 0.00013 37.3 9.8 74 443-516 16-92 (94)
27 PF13176 TPR_7: Tetratricopept 86.2 1.6 3.6E-05 33.2 4.8 26 469-494 3-28 (36)
28 PF13414 TPR_11: TPR repeat; P 85.9 2.8 6E-05 36.4 6.9 61 466-532 4-65 (69)
29 PF00207 A2M: Alpha-2-macroglo 85.6 1.9 4.1E-05 40.5 5.9 40 1065-1104 53-92 (92)
30 PF14559 TPR_19: Tetratricopep 85.5 0.93 2E-05 39.3 3.6 58 443-506 9-67 (68)
31 PRK10803 tol-pal system protei 85.5 4.5 9.7E-05 45.8 10.0 84 444-533 162-245 (263)
32 TIGR02917 PEP_TPR_lipo putativ 85.1 1.3E+02 0.0029 39.0 25.9 77 444-532 822-898 (899)
33 PF12895 Apc3: Anaphase-promot 84.0 5.8 0.00013 36.1 8.4 74 444-528 8-81 (84)
34 PF13584 BatD: Oxygen toleranc 83.2 90 0.0019 38.5 20.9 121 1051-1174 250-386 (484)
35 TIGR02795 tol_pal_ybgF tol-pal 82.5 7.7 0.00017 36.9 9.1 86 443-534 20-105 (119)
36 PF13174 TPR_6: Tetratricopept 81.8 1.8 3.8E-05 31.6 3.3 30 467-496 2-31 (33)
37 KOG1155 Anaphase-promoting com 81.2 52 0.0011 39.6 16.2 85 448-533 448-535 (559)
38 PF07705 CARDB: CARDB; InterP 80.8 14 0.0003 34.4 9.9 85 767-894 2-87 (101)
39 PF07719 TPR_2: Tetratricopept 80.4 3.5 7.5E-05 30.3 4.5 30 466-495 2-31 (34)
40 PF13374 TPR_10: Tetratricopep 79.6 4.1 9E-05 31.2 4.9 32 466-497 3-34 (42)
41 PF00515 TPR_1: Tetratricopept 79.5 4.3 9.3E-05 30.0 4.8 29 466-494 2-30 (34)
42 PF12688 TPR_5: Tetratrico pep 79.4 14 0.00031 36.6 9.7 87 441-533 17-103 (120)
43 KOG1840 Kinesin light chain [C 79.2 1.7E+02 0.0038 36.3 25.9 257 188-533 216-478 (508)
44 cd00189 TPR Tetratricopeptide 78.7 6.7 0.00015 34.1 6.7 77 444-532 19-95 (100)
45 KOG1953 Targeting complex (TRA 78.3 5 0.00011 51.5 7.4 72 1079-1154 690-765 (1235)
46 PF14559 TPR_19: Tetratricopep 75.7 6 0.00013 34.1 5.3 52 476-533 2-53 (68)
47 CHL00033 ycf3 photosystem I as 74.2 17 0.00038 37.7 9.3 89 220-321 73-162 (168)
48 KOG1174 Anaphase-promoting com 74.2 92 0.002 37.1 15.4 39 469-507 442-480 (564)
49 PF13429 TPR_15: Tetratricopep 73.3 6.7 0.00015 44.4 6.4 56 467-528 216-271 (280)
50 PLN03088 SGT1, suppressor of 73.1 1.6E+02 0.0034 34.9 18.0 81 442-534 19-99 (356)
51 PF10633 NPCBM_assoc: NPCBM-as 72.7 6.4 0.00014 35.6 4.9 58 1079-1137 2-61 (78)
52 PF13181 TPR_8: Tetratricopept 71.8 8.3 0.00018 28.3 4.5 28 467-494 3-30 (34)
53 cd00189 TPR Tetratricopeptide 71.7 9.1 0.0002 33.2 5.7 61 467-533 2-62 (100)
54 TIGR00990 3a0801s09 mitochondr 71.6 1.6E+02 0.0034 37.5 18.9 50 477-532 520-569 (615)
55 PF09976 TPR_21: Tetratricopep 71.6 22 0.00049 35.9 9.2 75 451-528 33-108 (145)
56 COG1729 Uncharacterized protei 70.8 16 0.00036 41.0 8.4 72 459-533 172-243 (262)
57 PF08626 TRAPPC9-Trs120: Trans 70.3 21 0.00045 49.2 11.0 77 1076-1154 645-723 (1185)
58 PF11614 FixG_C: IG-like fold 67.0 23 0.00049 34.7 7.8 51 1085-1136 34-84 (118)
59 TIGR02917 PEP_TPR_lipo putativ 66.2 3.8E+02 0.0083 34.8 21.4 58 469-532 740-797 (899)
60 TIGR03302 OM_YfiO outer membra 65.9 41 0.00089 36.7 10.5 61 469-532 170-230 (235)
61 PF13584 BatD: Oxygen toleranc 65.5 60 0.0013 40.0 12.9 136 1008-1152 72-222 (484)
62 PF13428 TPR_14: Tetratricopep 65.4 11 0.00023 30.0 4.1 32 467-498 3-34 (44)
63 PF13432 TPR_16: Tetratricopep 65.4 19 0.00042 30.7 6.2 46 449-494 14-60 (65)
64 PRK11447 cellulose synthase su 64.4 5.5E+02 0.012 35.6 24.6 58 470-533 274-331 (1157)
65 PF09976 TPR_21: Tetratricopep 61.3 47 0.001 33.6 9.1 74 443-526 66-139 (145)
66 PF10602 RPN7: 26S proteasome 60.4 86 0.0019 33.2 11.2 87 441-530 12-98 (177)
67 PF10633 NPCBM_assoc: NPCBM-as 59.5 72 0.0016 28.7 9.0 34 860-893 42-78 (78)
68 TIGR03504 FimV_Cterm FimV C-te 58.8 14 0.0003 29.9 3.6 25 469-493 3-27 (44)
69 PF13371 TPR_9: Tetratricopept 58.5 25 0.00055 30.5 5.8 57 471-533 1-57 (73)
70 KOG3617 WD40 and TPR repeat-co 58.3 51 0.0011 42.1 9.9 70 225-298 918-992 (1416)
71 PF14874 PapD-like: Flagellar- 58.3 62 0.0014 30.5 8.9 62 1078-1142 16-80 (102)
72 KOG3865 Arrestin [Signal trans 56.7 26 0.00056 39.8 6.5 76 1064-1139 191-279 (402)
73 PF09986 DUF2225: Uncharacteri 56.1 37 0.00081 37.2 7.7 57 443-499 136-199 (214)
74 PF07719 TPR_2: Tetratricopept 55.9 23 0.0005 25.7 4.3 29 220-248 2-30 (34)
75 PF13525 YfiO: Outer membrane 55.9 47 0.001 35.9 8.5 39 461-499 38-76 (203)
76 PF12739 TRAPPC-Trs85: ER-Golg 54.4 35 0.00076 41.3 7.9 67 465-531 208-280 (414)
77 TIGR02795 tol_pal_ybgF tol-pal 54.3 51 0.0011 31.1 7.7 64 467-533 4-67 (119)
78 PF14853 Fis1_TPR_C: Fis1 C-te 53.8 27 0.00059 29.4 4.8 28 466-493 2-29 (53)
79 PF13414 TPR_11: TPR repeat; P 53.7 25 0.00054 30.3 4.9 45 443-493 21-66 (69)
80 PF12895 Apc3: Anaphase-promot 53.3 28 0.00061 31.5 5.4 26 466-491 59-84 (84)
81 cd02679 MIT_spastin MIT: domai 53.2 33 0.00071 31.5 5.6 41 233-273 22-63 (79)
82 PF13181 TPR_8: Tetratricopept 51.7 29 0.00063 25.3 4.3 29 220-248 2-30 (34)
83 PRK11788 tetratricopeptide rep 50.8 4.7E+02 0.01 30.6 24.0 82 441-533 196-277 (389)
84 PF12739 TRAPPC-Trs85: ER-Golg 50.8 5.3E+02 0.011 31.2 25.9 46 462-507 367-412 (414)
85 PRK02603 photosystem I assembl 50.7 75 0.0016 33.1 8.8 28 466-493 73-100 (172)
86 PF00763 THF_DHG_CYH: Tetrahyd 50.7 23 0.00049 34.9 4.5 57 110-171 14-70 (117)
87 PRK15174 Vi polysaccharide exp 50.5 5.2E+02 0.011 33.3 18.0 80 443-534 302-381 (656)
88 smart00028 TPR Tetratricopepti 50.0 20 0.00043 24.3 3.1 28 467-494 3-30 (34)
89 PRK15363 pathogenicity island 49.9 1.9E+02 0.0042 30.1 11.2 98 180-303 32-133 (157)
90 PF09986 DUF2225: Uncharacteri 49.7 60 0.0013 35.6 8.1 73 217-298 116-190 (214)
91 KOG4422 Uncharacterized conser 48.3 4.3E+02 0.0093 31.9 14.7 68 463-532 520-587 (625)
92 PF00927 Transglut_C: Transglu 48.1 1.8E+02 0.0039 27.7 10.3 84 771-889 3-87 (107)
93 TIGR02521 type_IV_pilW type IV 47.4 1.2E+02 0.0025 31.9 9.9 75 442-528 152-226 (234)
94 KOG1585 Protein required for f 47.2 1.7E+02 0.0037 32.7 10.7 67 441-508 87-153 (308)
95 KOG2076 RNA polymerase III tra 47.1 51 0.0011 42.6 7.7 72 450-526 397-470 (895)
96 PF03704 BTAD: Bacterial trans 46.7 96 0.0021 31.1 8.7 81 441-527 22-118 (146)
97 PRK15359 type III secretion sy 46.0 75 0.0016 32.2 7.7 62 467-534 60-121 (144)
98 PF06030 DUF916: Bacterial pro 45.6 1E+02 0.0022 30.7 8.2 57 1079-1135 24-102 (121)
99 PF13525 YfiO: Outer membrane 45.1 85 0.0018 33.8 8.4 65 466-533 6-70 (203)
100 COG1721 Uncharacterized conser 44.5 84 0.0018 38.1 9.0 102 1068-1172 53-158 (416)
101 PRK10866 outer membrane biogen 44.3 46 0.00099 37.2 6.3 71 443-519 50-120 (243)
102 KOG1489 Predicted GTP-binding 43.9 1.9E+02 0.004 33.7 10.7 142 11-170 194-350 (366)
103 KOG1155 Anaphase-promoting com 43.7 85 0.0019 37.9 8.3 84 448-533 346-460 (559)
104 TIGR02552 LcrH_SycD type III s 42.0 88 0.0019 30.6 7.4 62 466-533 52-113 (135)
105 PF15146 FANCAA: Fanconi anemi 41.2 40 0.00088 39.8 5.2 72 1080-1152 72-154 (435)
106 PF07721 TPR_4: Tetratricopept 41.2 46 0.00099 23.3 3.6 23 467-489 3-25 (26)
107 PF07233 DUF1425: Protein of u 40.7 1.5E+02 0.0031 28.1 8.1 63 1070-1132 12-78 (94)
108 PF13778 DUF4174: Domain of un 40.5 1.3E+02 0.0027 29.8 8.0 61 108-168 24-86 (118)
109 COG4105 ComL DNA uptake lipopr 40.2 2E+02 0.0043 32.4 10.1 138 183-328 71-218 (254)
110 TIGR03302 OM_YfiO outer membra 40.1 95 0.0021 33.8 8.0 61 469-532 37-97 (235)
111 TIGR02521 type_IV_pilW type IV 39.4 1.6E+02 0.0035 30.7 9.5 57 468-530 138-194 (234)
112 PRK10866 outer membrane biogen 38.5 86 0.0019 35.0 7.3 58 468-528 178-235 (243)
113 TIGR02552 LcrH_SycD type III s 37.7 99 0.0021 30.2 7.0 61 466-532 18-78 (135)
114 PF04184 ST7: ST7 protein; In 37.4 1.4E+02 0.003 36.6 9.0 34 500-533 254-287 (539)
115 PRK09782 bacteriophage N4 rece 37.3 8E+02 0.017 33.4 17.1 186 219-527 44-238 (987)
116 PF07718 Coatamer_beta_C: Coat 37.1 2.4E+02 0.0051 28.9 9.2 69 1064-1137 54-124 (140)
117 PF00515 TPR_1: Tetratricopept 36.8 73 0.0016 23.2 4.4 29 220-248 2-30 (34)
118 COG5091 SGT1 Suppressor of G2 36.8 73 0.0016 35.7 6.0 56 444-499 58-113 (368)
119 COG3063 PilF Tfp pilus assembl 36.1 1.2E+02 0.0026 33.6 7.4 62 466-533 174-235 (250)
120 PRK15331 chaperone protein Sic 36.0 1.7E+02 0.0036 30.8 8.3 106 173-301 27-133 (165)
121 TIGR02745 ccoG_rdxA_fixG cytoc 35.6 1.3E+02 0.0027 36.8 8.5 51 1085-1136 349-399 (434)
122 PRK10747 putative protoheme IX 35.5 3.8E+02 0.0083 32.1 12.7 162 270-531 52-213 (398)
123 KOG3317 Translocon-associated 35.0 1.8E+02 0.0039 30.4 8.1 76 1077-1152 37-117 (188)
124 KOG2003 TPR repeat-containing 35.0 1.9E+02 0.0041 34.6 9.3 80 448-533 506-586 (840)
125 PRK11788 tetratricopeptide rep 34.6 1.8E+02 0.0039 34.1 9.8 61 467-533 182-242 (389)
126 PF12862 Apc5: Anaphase-promot 34.4 1.8E+02 0.0039 27.2 7.7 61 474-534 7-70 (94)
127 PF12584 TRAPPC10: Trafficking 34.3 3.2E+02 0.007 27.9 10.2 92 608-715 10-113 (147)
128 KOG0543 FKBP-type peptidyl-pro 34.1 85 0.0018 37.3 6.4 66 469-534 212-286 (397)
129 KOG0686 COP9 signalosome, subu 34.1 2.2E+02 0.0047 34.1 9.5 56 440-496 125-180 (466)
130 KOG1586 Protein required for f 34.0 2.8E+02 0.006 31.0 9.7 90 442-532 31-120 (288)
131 PF15015 NYD-SP12_N: Spermatog 33.9 1.9E+02 0.004 34.7 8.9 58 236-295 193-250 (569)
132 KOG1042 Germ-line stem cell di 33.9 47 0.001 41.3 4.4 106 80-195 665-805 (845)
133 KOG2908 26S proteasome regulat 33.3 4.9E+02 0.011 30.5 12.0 95 440-534 90-186 (380)
134 COG0536 Obg Predicted GTPase [ 33.3 3.7E+02 0.008 31.7 11.1 131 11-158 157-302 (369)
135 PF13512 TPR_18: Tetratricopep 32.7 95 0.0021 31.8 5.8 49 449-497 27-79 (142)
136 PRK14184 bifunctional 5,10-met 32.3 1.2E+02 0.0026 34.8 7.2 57 111-171 16-72 (286)
137 PF09295 ChAPs: ChAPs (Chs5p-A 32.0 2.2E+02 0.0049 34.2 9.7 71 443-525 218-288 (395)
138 KOG1126 DNA-binding cell divis 32.0 73 0.0016 39.9 5.7 66 448-515 335-404 (638)
139 PRK02603 photosystem I assembl 31.7 2.7E+02 0.0058 28.9 9.4 61 467-530 37-97 (172)
140 PRK14192 bifunctional 5,10-met 31.4 97 0.0021 35.5 6.3 51 111-164 18-68 (283)
141 PRK14171 bifunctional 5,10-met 31.2 1.4E+02 0.0031 34.3 7.5 57 111-171 17-73 (288)
142 PF05843 Suf: Suppressor of fo 31.1 1.6E+02 0.0035 33.5 8.2 78 448-532 17-96 (280)
143 PF10300 DUF3808: Protein of u 30.9 2.1E+02 0.0047 35.2 9.7 71 444-521 286-356 (468)
144 CHL00033 ycf3 photosystem I as 30.9 3.8E+02 0.0082 27.5 10.3 80 443-525 53-133 (168)
145 KOG1941 Acetylcholine receptor 30.5 1.5E+02 0.0032 34.8 7.4 88 446-533 143-234 (518)
146 PRK14188 bifunctional 5,10-met 30.4 1.4E+02 0.003 34.5 7.3 58 111-172 17-74 (296)
147 PRK14167 bifunctional 5,10-met 30.3 1.2E+02 0.0025 35.1 6.7 56 111-171 17-72 (297)
148 PF13371 TPR_9: Tetratricopept 30.2 1.2E+02 0.0026 26.2 5.5 46 443-494 13-58 (73)
149 PLN02616 tetrahydrofolate dehy 30.0 1.4E+02 0.0031 35.3 7.3 57 111-171 88-144 (364)
150 PF05753 TRAP_beta: Translocon 30.0 4.7E+02 0.01 28.0 10.7 96 766-897 20-117 (181)
151 TIGR00990 3a0801s09 mitochondr 29.7 1E+02 0.0023 39.2 7.0 56 465-526 160-215 (615)
152 PLN03202 protein argonaute; Pr 29.7 1.5E+02 0.0033 39.7 8.5 108 79-195 699-835 (900)
153 PHA02503 putative transcriptio 28.9 1.2E+02 0.0026 24.8 4.5 51 175-227 3-53 (57)
154 PRK14185 bifunctional 5,10-met 28.8 1.2E+02 0.0026 34.9 6.5 58 110-171 15-72 (293)
155 PRK15363 pathogenicity island 28.6 2.4E+02 0.0052 29.4 8.0 68 451-526 12-90 (157)
156 cd09030 DUF1425 Putative perip 28.3 3.1E+02 0.0066 26.1 8.3 61 1071-1131 21-85 (101)
157 PF12688 TPR_5: Tetratrico pep 28.3 3.1E+02 0.0067 27.2 8.5 64 467-533 3-66 (120)
158 PLN03088 SGT1, suppressor of 28.1 1.5E+02 0.0033 35.0 7.5 61 468-534 5-65 (356)
159 PF12690 BsuPI: Intracellular 28.1 4.8E+02 0.01 24.0 9.4 76 626-708 2-81 (82)
160 PRK14169 bifunctional 5,10-met 27.8 1.2E+02 0.0027 34.6 6.3 56 111-171 16-71 (282)
161 PF07720 TPR_3: Tetratricopept 27.8 1E+02 0.0023 23.7 3.9 20 470-489 6-25 (36)
162 PF13176 TPR_7: Tetratricopept 27.7 78 0.0017 23.9 3.3 24 224-247 4-27 (36)
163 COG1470 Predicted membrane pro 27.5 1.4E+02 0.0031 36.1 6.8 60 1078-1137 280-344 (513)
164 PLN02897 tetrahydrofolate dehy 27.5 1.4E+02 0.0031 35.1 6.7 57 111-171 71-127 (345)
165 PF13174 TPR_6: Tetratricopept 27.4 94 0.002 22.1 3.6 25 222-246 3-27 (33)
166 PF05326 SVA: Seminal vesicle 27.3 2.3E+02 0.005 28.3 7.1 77 1065-1143 31-109 (124)
167 KOG3865 Arrestin [Signal trans 27.2 1.5E+02 0.0033 33.9 6.5 50 766-817 194-243 (402)
168 PRK14193 bifunctional 5,10-met 26.9 1.2E+02 0.0026 34.7 6.0 56 111-171 18-73 (284)
169 PF04781 DUF627: Protein of un 26.6 2.2E+02 0.0048 27.9 6.8 61 471-533 2-68 (111)
170 cd05804 StaR_like StaR_like; a 26.5 1.9E+02 0.0042 33.4 8.0 62 468-531 151-212 (355)
171 PF13374 TPR_10: Tetratricopep 26.4 1.3E+02 0.0028 22.6 4.4 35 222-256 5-39 (42)
172 PLN03098 LPA1 LOW PSII ACCUMUL 26.2 2E+02 0.0043 35.1 7.8 24 470-493 80-103 (453)
173 PF12690 BsuPI: Intracellular 25.5 1.9E+02 0.0041 26.7 5.9 52 1084-1135 2-69 (82)
174 PRK14179 bifunctional 5,10-met 25.4 1.9E+02 0.004 33.3 7.1 58 111-172 17-74 (284)
175 PRK14189 bifunctional 5,10-met 25.4 1.5E+02 0.0033 33.9 6.5 56 111-171 18-73 (285)
176 PRK04841 transcriptional regul 25.3 3.8E+02 0.0082 35.7 11.4 88 445-532 511-600 (903)
177 PF14561 TPR_20: Tetratricopep 25.2 1.5E+02 0.0033 27.7 5.4 50 466-522 23-75 (90)
178 PRK14194 bifunctional 5,10-met 25.2 1.4E+02 0.0031 34.4 6.2 56 111-171 19-74 (301)
179 smart00544 MA3 Domain in DAP-5 25.0 4.3E+02 0.0093 25.3 8.8 56 469-532 6-63 (113)
180 PF03504 Chlam_OMP6: Chlamydia 24.7 4.2E+02 0.0092 24.5 7.6 34 765-798 12-45 (95)
181 PRK14168 bifunctional 5,10-met 24.5 1.7E+02 0.0037 33.8 6.6 58 111-172 18-75 (297)
182 PRK14190 bifunctional 5,10-met 24.5 1.5E+02 0.0032 34.1 6.1 57 110-171 17-73 (284)
183 PRK14182 bifunctional 5,10-met 24.1 1.4E+02 0.0031 34.1 5.9 56 111-171 16-71 (282)
184 PRK10803 tol-pal system protei 23.9 1.5E+02 0.0033 33.6 6.1 52 444-498 199-250 (263)
185 KOG0094 GTPase Rab6/YPT6/Ryh1, 23.8 4.5E+02 0.0098 28.6 9.0 92 91-191 96-189 (221)
186 PF01835 A2M_N: MG2 domain; I 23.4 6E+02 0.013 23.6 10.1 44 615-658 6-51 (99)
187 PRK14166 bifunctional 5,10-met 23.3 1.6E+02 0.0034 33.8 6.0 56 111-171 16-71 (282)
188 PRK15359 type III secretion sy 23.1 2.9E+02 0.0062 27.9 7.5 65 217-301 56-120 (144)
189 KOG1130 Predicted G-alpha GTPa 22.7 1.4E+02 0.003 35.5 5.4 67 225-305 241-307 (639)
190 COG4105 ComL DNA uptake lipopr 22.5 1.6E+02 0.0034 33.1 5.7 51 448-498 50-104 (254)
191 PRK14170 bifunctional 5,10-met 22.3 1.6E+02 0.0036 33.7 5.9 58 110-172 16-73 (284)
192 KOG1585 Protein required for f 22.3 2E+02 0.0043 32.3 6.2 52 440-491 125-176 (308)
193 KOG1463 26S proteasome regulat 22.3 1.8E+02 0.0038 34.0 6.0 55 443-497 106-160 (411)
194 PRK14176 bifunctional 5,10-met 22.3 2.2E+02 0.0047 32.8 6.9 57 111-171 23-79 (287)
195 PRK14191 bifunctional 5,10-met 22.1 1.9E+02 0.004 33.3 6.3 57 111-171 16-72 (285)
196 KOG0545 Aryl-hydrocarbon recep 22.1 2.2E+02 0.0048 31.8 6.5 60 234-295 193-252 (329)
197 PF06280 DUF1034: Fn3-like dom 22.1 4E+02 0.0087 25.6 8.0 57 1080-1136 6-80 (112)
198 PF14646 MYCBPAP: MYCBP-associ 22.0 2.6E+02 0.0057 34.0 8.1 73 1066-1145 235-320 (426)
199 PF04212 MIT: MIT (microtubule 21.7 3.9E+02 0.0085 23.3 7.1 36 222-257 8-43 (69)
200 KOG1130 Predicted G-alpha GTPa 21.6 3.1E+02 0.0068 32.8 7.9 50 444-493 247-303 (639)
201 PRK14948 DNA polymerase III su 21.5 1.8E+03 0.039 28.4 15.6 163 128-328 120-294 (620)
202 PF13512 TPR_18: Tetratricopep 21.2 3.2E+02 0.0069 28.1 7.1 65 467-534 12-76 (142)
203 PF10579 Rapsyn_N: Rapsyn N-te 21.2 2.5E+02 0.0054 25.9 5.6 55 475-532 16-70 (80)
204 PRK14175 bifunctional 5,10-met 21.1 1.7E+02 0.0037 33.6 5.8 56 111-171 18-73 (286)
205 KOG0547 Translocase of outer m 20.7 1.3E+02 0.0027 36.8 4.6 59 470-534 120-178 (606)
206 PRK14186 bifunctional 5,10-met 20.5 2.2E+02 0.0047 33.0 6.4 57 111-171 17-73 (297)
207 PRK14187 bifunctional 5,10-met 20.3 2.3E+02 0.0051 32.6 6.6 57 111-171 17-73 (294)
208 KOG1366 Alpha-macroglobulin [P 20.2 2.8E+02 0.0061 38.9 8.4 75 1066-1140 761-848 (1436)
209 PF13473 Cupredoxin_1: Cupredo 20.0 2.6E+02 0.0055 26.6 6.0 23 683-707 68-90 (104)
210 PLN02516 methylenetetrahydrofo 20.0 2.4E+02 0.0052 32.6 6.7 57 111-171 24-80 (299)
No 1
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-71 Score=614.89 Aligned_cols=763 Identities=13% Similarity=0.055 Sum_probs=585.5
Q ss_pred HHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCC-
Q 040980 321 SRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVA- 399 (1193)
Q Consensus 321 srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~- 399 (1193)
+.|++.|++++|.+..-+++. . .+++|||||+.+|-|.++|+++...-..+ +. .-....|+..+
T Consensus 2 ~sd~~A~~~~~e~~~~~~Lss---------~----Q~~e~~F~~~~qAfYqQ~~Kti~s~~~tH-q~-~l~~~N~~~~~~ 66 (809)
T KOG4386|consen 2 ISDNLAADRAHELCQACSLSS---------K----QLLELAFHELCQAFYQQRLKTIRSRQDTH-QG-LLKTKNSVISTR 66 (809)
T ss_pred cchhhhhhHHHHHHHHhCccH---------H----hhhchhHHHHHHHHHHHHHHHHHHhhccc-hh-hhccCCCCcccc
Confidence 568999999999997655432 1 24799999999999999998764321111 00 00012222222
Q ss_pred ---CceeeeccccccccCCcccCCCCChhhHhH---hHhh-hCcccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 040980 400 ---PSVYIGQFDRLLEQGDTVSKQPLTDEDYTR---YVIA-EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMA 472 (1193)
Q Consensus 400 ---~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~---~al~-~~~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA 472 (1193)
..-|+|| +.|++|-..-+ |.+-+.++ +|.. +..++-|+..+|.+|+++..||++|++.||.+.++..|+
T Consensus 67 ~~~~L~F~~s--~a~~~~l~S~e--L~~~kskq~~~~A~~~e~~~~l~an~~Ia~Lk~~a~Q~~~Y~~P~~nS~~~V~~G 142 (809)
T KOG4386|consen 67 GMCELCFLHS--TALEPHLASIE--LLLWKSKQCYQFAHLFEVAGGLSANTEIAALKRNAPQNVPYPSPDANSSSTVFFG 142 (809)
T ss_pred ceEEEEeccc--ccccccceeEe--eccchhhHHHHHHHHHHHhcCcchhhHHHHHhhcccccCCCCCCCcCccceeEec
Confidence 2469999 88998854222 33333322 3333 456677899999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccCCCCCCCCCCCCccccCCC
Q 040980 473 VEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGP 552 (1193)
Q Consensus 473 ~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~~~~~~~~~~~~~~~~~~p 552 (1193)
++|+..++|.+|.+.++.++.+|+.+|||.+.+.++..+..|.++...-++|..+..+|+...
T Consensus 143 q~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk~~~~~~~k~~mm~~~----------------- 205 (809)
T KOG4386|consen 143 QRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQKYGCLRMKKKVMMEMN----------------- 205 (809)
T ss_pred ccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999642
Q ss_pred CCCCChhhhHHHHHHHHHHHhccccCCCcc-CC---------Cccccc--CCCCceeeeeeccccceeEEEEEEecCcee
Q 040980 553 AGPPTLSQREIIHKEVFELVSREVGLASVE-DN---------NCIKIS--RDNPLHLEVDLVSPLRLVILASVAFHEQII 620 (1193)
Q Consensus 553 ~~~~~~~er~~i~~~l~~~l~~~~~~~~~~-~~---------~~~~~~--~~~~~~L~~d~~~pl~~~~~~~~~F~~~~~ 620 (1193)
+.....|.+++.+....+++.+.++++++ |- |...|. +..-..|-.....| ++.|...|+.|..
T Consensus 206 -t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~---~l~~~~~~~~P~~ 281 (809)
T KOG4386|consen 206 -TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVK---GLLDVLDGKPPGS 281 (809)
T ss_pred -hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhh---HHHHHhcCCCCCC
Confidence 23445788999999999999987776654 21 122221 12222333333445 4889999999999
Q ss_pred cCCCeEEEEEEEEcCCCceeEecEEEEEEecCCccEEE--EcCCccccccccCCcccccCCCCceEeecCCeEEEEEEEe
Q 040980 621 KPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVI--INAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIK 698 (1193)
Q Consensus 621 ~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~l~l~p~~~~~~~~~~~ 698 (1193)
+...+...+..|+..+|.++.+.+..+.|+...+++.. ..+ ..++.+++ ..+.+..++.|+++++.-+++.
T Consensus 282 ~~~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~~l~~Et------~~s~~~~q-tv~Q~s~~~V~~e~~s~i~q~i 354 (809)
T KOG4386|consen 282 PFPNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLET------RVSFLDQQ-TVEQDSKVAVRVEIVSKIEQVI 354 (809)
T ss_pred CCCChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHHHHHHHH------HHHHHHHh-hhccCceEEeeHHHHHHHHHHH
Confidence 99999999999999999999999999999888877642 222 11222222 2334678999999888777764
Q ss_pred --eccce-EEEEEEEEEEeCCccccccc------CCCCcc-ccccc-cccccccccCCCCCCcccccccccceeeeCCCC
Q 040980 699 --SEQSG-KLECISVVAKMGPHFTICCR------AESPAS-MEDLP-LWKFEDRVETFPTKDPALAFSGQKATHVEEPDP 767 (1193)
Q Consensus 699 --~~~~g-~~~v~~V~l~lg~~~~~~~~------~e~~~~-~~~~~-~W~~~~~~~~~~~~~~~~~is~~~~~~I~~~~p 767 (1193)
.+.+| ..+++++.+..|+...+||- +++.++ -+... .=.|. ++...+. ...+.+..+...++..+.|
T Consensus 355 ~~nd~~~~~~~~k~~~~A~~t~n~~~~li~~~~~~G~v~~Sks~~~q~~~~~-~~~n~~q-~~~~tv~~~t~~l~~a~~~ 432 (809)
T KOG4386|consen 355 RLNDVSVHLKAKKFPPDANQTANDADCLIYDPIHLGSVEVSKSKPLQRVVLL-DLKNAKQ-NWIVTVTKVTLDLGNAIRG 432 (809)
T ss_pred hhcchhheeeeecCCcccccCCCCCcEEEecCCCCcchhhhhhhhhhhHHHh-hcccccc-ceEEEeeehhhhhhhhccC
Confidence 45666 77799999999999888851 111111 00000 00011 1122221 1223555667778999999
Q ss_pred ceEEEcCCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCc
Q 040980 768 QVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPG 847 (1193)
Q Consensus 768 ~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~ 847 (1193)
++++...|.+|++-+|+|..-++|...+..+.- +.+.+ +|++ ++++.++ .+-+|+...|+.+|++ .++.
T Consensus 433 NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~-e~~~k------v~~~-~Ge~tsL-T~rn~~k~~~~~~~~d--~~~~ 501 (809)
T KOG4386|consen 433 NIEFDENALNRNCHVENIIGFLKIGVAKTSVKL-ESVEK------VDCL-IGEVTSL-TIRNTCKSSPIHGLLD--FKRK 501 (809)
T ss_pred cceeccccCCcccchheEEEEEEeeechhhhhh-hhhhh------cCcc-cccccce-eeecccccCCchhhhh--hhhH
Confidence 999999999999999999999999888744322 21221 5666 4555556 4678999999999854 3444
Q ss_pred hhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecCCCCccc---ceeEEEEEEEEEEeecceEEeeee
Q 040980 848 EIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNEST---AQKVHVHKSLQIEGMAAIAVGHRF 924 (1193)
Q Consensus 848 ~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~~~~~~~---~~~~~~~k~~~i~v~~Pf~vs~~f 924 (1193)
..+ .+.++++.+||....++|+||..+|.+|+.+.++|.++...+. .|++++..|.+++++.||+|+.+|
T Consensus 502 ~~k-------~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVeekeivckchkdeTvtietvfpfdvavkF 574 (809)
T KOG4386|consen 502 EQK-------HAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKF 574 (809)
T ss_pred hhc-------cCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHHhhHhhhccccceEEEEEEeeeeeeeee
Confidence 433 4678899999998888999999999999999999998776432 389999999999999999999999
Q ss_pred eccccCCccccccCCCCCcccccccCCCCCcceEEEeeeeccccceeEEEEEEEecCCCceeeecccCCCCCCCCCcccC
Q 040980 925 MLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLM 1004 (1193)
Q Consensus 925 ~~~~~~~p~ll~~~~~~~~~e~l~~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~~~~~~~~~~~~~~l~~~~L~ 1004 (1193)
.+ +.+++++.++..-+++++..+...++|.+.|.+.+++... ..|.+ .++++.....-++
T Consensus 575 vs---------------tkfehlervyadIpfllmtdLlsaspwAltIVsSelqlap----smttv-dqleSqvdnvilq 634 (809)
T KOG4386|consen 575 VS---------------TKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAP----SMTTV-DQLESQVDNVILQ 634 (809)
T ss_pred eh---------------hhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhh----hheee-ecccccccchhhh
Confidence 86 2355666555555566666677778899999888887663 34443 3345556778999
Q ss_pred CCCeeeEEEEEeeCC---CCCcccceEEEEEEEcCCCCCCCCCCCCccceEeeeeccCCccccCCCeEEEeecCCceeeC
Q 040980 1005 PGEEFKKVFTIVPKV---ESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLG 1081 (1193)
Q Consensus 1005 ~gd~~~~~f~l~p~~---~~~~~~~G~~~I~WrR~~~~~~~~~~~~~~~~~~s~~~LP~v~~~~~pl~v~~~~P~~~~vg 1081 (1193)
.||+.+.+||+.+.. ..+.+++|+|.|.|||.+...+. +.+++.++||+|.++.+||.|++++|++|+|+
T Consensus 635 tgEsasecfclqcpslgniEggvatGhyiisWkRtsameNi-------piittVitLphviVe~iPlhvnadlpsfgrVR 707 (809)
T KOG4386|consen 635 TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENI-------PIITTVITLPHVIVEAIPLHVNADLPSFGRVR 707 (809)
T ss_pred cccceeeeeeEeccccccccCCCccceEEEEEeecccccCC-------CceeeecccccceeeeccceeecCCCCcceec
Confidence 999999999998643 46889999999999999875542 78999999999999999999999999999999
Q ss_pred CeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccceecCeeEEEecccccc-cc-
Q 040980 1082 EPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAE-FQ- 1159 (1193)
Q Consensus 1082 ~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~~~~~~~-~~- 1159 (1193)
+|++++|+++|+|..+|++++++|+||+|||||.||++++||||.++++.|++|||++||++||+|.|...|+++. .+
T Consensus 708 eslpvkyhLqnktdlvqdveisvepsDaFMFSGlkqirlriLPGteqemlynfypLmAGyqqlPslninllrfpnfTnQl 787 (809)
T KOG4386|consen 708 ESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQL 787 (809)
T ss_pred ccccEEEEeccccceeeeEEeecccchhheecccceEEEEEcCCCceEEEEEEehhhchhhhCCcccccCccCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999872 11
Q ss_pred -CCCCccEEEEecCCCccc
Q 040980 1160 -ASNTASTVFVFPSKPDFK 1177 (1193)
Q Consensus 1160 -~~~~~~~VfV~P~~~~~~ 1177 (1193)
-.+.|+.|||+|++|.++
T Consensus 788 lrRfiPtsIFVkPqgrlmd 806 (809)
T KOG4386|consen 788 LRRFIPTSIFVKPQGRLMD 806 (809)
T ss_pred HHhhcCceEEEcccccccC
Confidence 127999999999998665
No 2
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=100.00 E-value=5.6e-56 Score=549.13 Aligned_cols=520 Identities=24% Similarity=0.363 Sum_probs=399.0
Q ss_pred ceeeeeeccccceeEEEEEEecCceecCCCeEEEEEEEEcCCCceeEecEEEEEEecCCccEEEEcCCccccc-cccCCc
Q 040980 595 LHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLA-ATNDGL 673 (1193)
Q Consensus 595 ~~L~~d~~~pl~~~~~~~~~F~~~~~~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~~~~~~~i~~~~~~~~~-~~~~~~ 673 (1193)
++|++|.++|+ |.|+|+|.++++++|+++++||+|+|+++.||+|++++|.|+++.+++++.+++..... ..+.+.
T Consensus 1 i~i~~~~~~~~---l~~~~~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~ 77 (554)
T PF07919_consen 1 IVIDMDDVSPF---LEASVAFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSS 77 (554)
T ss_pred CeeccccccCc---EEEEEEEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccc
Confidence 36788888887 99999999999999999999999999999999999999999999999999988611110 001111
Q ss_pred ccccCCCCceEeecCCeEEEEEEEeecc---ceEEEEEEEEEEeCCc---ccccccCCCCccccccccccccccccCCCC
Q 040980 674 QVHRAESTPLILITNRWLRLTYEIKSEQ---SGKLECISVVAKMGPH---FTICCRAESPASMEDLPLWKFEDRVETFPT 747 (1193)
Q Consensus 674 ~~~~~~~~~l~l~p~~~~~~~~~~~~~~---~g~~~v~~V~l~lg~~---~~~~~~~e~~~~~~~~~~W~~~~~~~~~~~ 747 (1193)
.....+.++|.|.||++++|+|.+.+.. +|+++|.+|.|.||.. ...++..+...+......|........
T Consensus 78 ~~~~~~~~~L~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (554)
T PF07919_consen 78 GSPLSGSADLTLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKS--- 154 (554)
T ss_pred cccccCccceEEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCccee---
Confidence 1112344779999999999999999988 9999999999999943 111222221111111122222211111
Q ss_pred CCcccccc---cccceeeeCCCCceEEEc-CCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCcccc
Q 040980 748 KDPALAFS---GQKATHVEEPDPQVDVDL-GASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEA 823 (1193)
Q Consensus 748 ~~~~~~is---~~~~~~I~~~~p~v~v~~-~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~ 823 (1193)
..+. .+++++|.+++|+|+|++ .|.+|||+||+|+|+|+|.|+++....+.+.+.+. ..+... ....
T Consensus 155 ----~~i~~~~~~~~i~I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~---~~~~~~--~~~~ 225 (554)
T PF07919_consen 155 ----RPIRKPRDQSSIRILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLL---HPSQLG--VSSE 225 (554)
T ss_pred ----eeccCCCCCCEEEEECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEe---cccccc--cccc
Confidence 1222 578899999999999999 99999999999999999999998887766665433 001110 0000
Q ss_pred CccccceEEEccccCCCccccCCchhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecC--CCCcccc
Q 040980 824 SSMESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSP--LNNESTA 901 (1193)
Q Consensus 824 ~~~~s~~v~l~g~~~~~~~~~~~~~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~--~~~~~~~ 901 (1193)
...+...++|.+.... + .++..+.+|.+++|++++.++++++.+.|.++|.++++|.. .+.. .
T Consensus 226 ~~~~~~~~~~~~~~~~-----~--------~~~~~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~--~ 290 (554)
T PF07919_consen 226 ETEDLSQVNWDSDKDD-----E--------PLFLGIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHLDVESDP--E 290 (554)
T ss_pred cCccceeccccccccc-----c--------hhccCcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCC--c
Confidence 0011122333222211 1 23445889999999999999999999999999999999987 4333 3
Q ss_pred eeEEEEEEEEEEeecceEEeeeeeccccCCccccccCCCCCcc-------------cccccCCCCCcceEEEeeeecccc
Q 040980 902 QKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDS-------------EQLASLPLNETSLLIVSAKNCTEV 968 (1193)
Q Consensus 902 ~~~~~~k~~~i~v~~Pf~vs~~f~~~~~~~p~ll~~~~~~~~~-------------e~l~~~~~~~~~ll~~~i~~~s~~ 968 (1193)
+.++..+++++++..||++++.|+++|+.+|+.+.......+. +....+..++++++..++.++++|
T Consensus 291 ~~i~~~~~~~l~~~~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~ 370 (554)
T PF07919_consen 291 TPISKTKTVQLPVINPFEANYDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPE 370 (554)
T ss_pred eeEEEeEEEeeeEEcCEEeeeeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCCC
Confidence 7888899999999999999999999999988832111111110 222346788999999999999999
Q ss_pred ceeEEEEEEEecCCCceeeecccCCC-CCCCCCcccCCCCeeeEEEEE-------eeCCCCCcccceEEEEEEEcCCCCC
Q 040980 969 SLQLQSVAIDNEDGDSERVCSVQHGG-ENLSGPSLLMPGEEFKKVFTI-------VPKVESSKLGLGTVCLRWRRDCGID 1040 (1193)
Q Consensus 969 pl~i~sv~l~~~~~~~~~~~~~~~~~-~~~l~~~~L~~gd~~~~~f~l-------~p~~~~~~~~~G~~~I~WrR~~~~~ 1040 (1193)
+|.|++++++.........|.+.... .....+..+++++++...||+ ....+.....+|.|+|+|||..+..
T Consensus 371 ~L~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~I~WrR~~~~s 450 (554)
T PF07919_consen 371 PLEIEDISLEVLSSNGGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDDRRNVTLLGSLVIKWRRNSSNS 450 (554)
T ss_pred ceEEEEEEEEEecCCCceeeeeccccccCCCccceeCccccccccccccccccccccccCccceeEEEEEEEEEECCCCC
Confidence 99999999998866555555543333 122356899999999888883 2334567889999999999932222
Q ss_pred CCCCCCCccceEeeeeccCCccccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcE
Q 040980 1041 DHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTV 1120 (1193)
Q Consensus 1041 ~~~~~~~~~~~~~s~~~LP~v~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l 1120 (1193)
. ...+++.++||++.+.+.|+.|.+++|+++.+|+||+++|+|+|+|.++++|.++|+++++|||||.||.++
T Consensus 451 ~-------~~~~~t~l~lP~~~v~~~~~~v~~~~p~~~~~~~~~~l~~~I~N~T~~~~~~~~~me~s~~F~fsG~k~~~~ 523 (554)
T PF07919_consen 451 S-------DPVVTTPLPLPRVNVPSSPLRVLASVPPSAIVGEPFTLSYTIENPTNHFQTFELSMEPSDDFMFSGPKQTTF 523 (554)
T ss_pred C-------CceEEEEeecCceEccCCCcEEEEecCCccccCcEEEEEEEEECCCCccEEEEEEEccCCCEEEECCCcCce
Confidence 1 168999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEEEEECcccceecCeeEEEe
Q 040980 1121 FVLPKSKHILCYKVVPLGSGLLQLPKVTVIS 1151 (1193)
Q Consensus 1121 ~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~ 1151 (1193)
+|+|++++.++|+|+||.+|+++||+|+|+|
T Consensus 524 ~llP~s~~~~~y~l~pl~~G~~~lP~l~v~d 554 (554)
T PF07919_consen 524 SLLPFSRHTVRYNLLPLVAGWWILPRLKVRD 554 (554)
T ss_pred EECCCCcEEEEEEEEEccCCcEECCcEEEeC
Confidence 9999999999999999999999999999986
No 3
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=100.00 E-value=2.5e-50 Score=446.07 Aligned_cols=240 Identities=37% Similarity=0.598 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCC---CcchhhhH-HHHHHHHHHHHHHhcccCCCCC
Q 040980 264 RLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGA---PEVVFLHW-EWLSRQFLVFAELLDTSSVPAQ 339 (1193)
Q Consensus 264 r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~---~e~~f~h~-~W~srQ~~~faeL~~~a~~~~~ 339 (1193)
||+|+|+|||+|||||||||||.|+|.+||+||++|+++|++++|. ++..|+|| +|+||||++|||||++++.+++
T Consensus 1 R~~E~r~lad~i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l 80 (247)
T PF11817_consen 1 RWNEARTLADFIAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGL 80 (247)
T ss_pred CHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccC
Confidence 7999999999999999999999999999999999999999999865 66789999 8999999999999999998776
Q ss_pred cccccccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccC
Q 040980 340 SISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSK 419 (1193)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~ 419 (1193)
++. .++||||||+.||+|+.+||++++... +++....+..+.+..|++ |+ +
T Consensus 81 ~~~-------------~~~~pG~yy~~AA~~~~~Rr~~a~~~~-----~~p~~~~~~~~~~~~~~~---------~~-~- 131 (247)
T PF11817_consen 81 TPP-------------STQHPGFYYQIAAKHAVERRKLAEAIP-----PDPDSSPASSVVPSFYGY---------DT-Y- 131 (247)
T ss_pred CCC-------------CCCCcchHHHHHHHHHHHHHHHHHhcc-----CCCCCCchhhccchhhcc---------cc-c-
Confidence 532 136899999999999999999876443 111011112233333333 22 1
Q ss_pred CCCChhhHhHhHh--hhCcccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 420 QPLTDEDYTRYVI--AEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 420 ~~l~~~e~~~~al--~~~~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
.+++++++.+++ .++++++|+..||+||++|+++|+++++.||+++|+++||+||+++|||++|+++|++++.+||+
T Consensus 132 -~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 132 -SLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred -ccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 133344444444 35688999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 498 EGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 498 egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
|||+.|++.+|+++++|++++||.++|+.+||||++
T Consensus 211 egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 211 EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999996
No 4
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=309.37 Aligned_cols=325 Identities=14% Similarity=0.246 Sum_probs=257.4
Q ss_pred CCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCchhhhhcccc
Q 040980 777 GPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSF 856 (1193)
Q Consensus 777 ~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~~i~~l~~s~ 856 (1193)
.-.++||.|.--|.|.|..+...+. +.+. .+-+ ..+.-+++....
T Consensus 9 ~niflgetfs~yinv~nds~k~v~~-i~lk------------~dlq---tssqrl~l~~s~------------------- 53 (348)
T KOG2625|consen 9 ENIFLGETFSFYINVHNDSEKTVKD-ILLK------------ADLQ---TSSQRLNLPASN------------------- 53 (348)
T ss_pred cceeeccceEEEEEEecchhhhhhh-heee------------eccc---ccceeeccccch-------------------
Confidence 4578999999999999988654331 1111 1111 112334431000
Q ss_pred ceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecCCCCcccceeEEEEEEEEEEeecceEEeeeeeccccCCccccc
Q 040980 857 GLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLS 936 (1193)
Q Consensus 857 ~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~~~~~~~~~~~~~~k~~~i~v~~Pf~vs~~f~~~~~~~p~ll~ 936 (1193)
-....++|.-....++..+++.+|+|+|.|.|+|++..+| ++.++|+|+|+|.+|+||++|||++..+
T Consensus 54 --~~~aei~~~~c~~~vi~hevkeig~hilicavny~tq~ge----~myfrkffkf~v~kpidvktkfynaesd------ 121 (348)
T KOG2625|consen 54 --AAAAEIEPDCCEDDVIHHEVKEIGQHILICAVNYKTQAGE----KMYFRKFFKFPVLKPIDVKTKFYNAESD------ 121 (348)
T ss_pred --hhhhhcCccccchhhhhHHHHhhccEEEEEEEeeeccCcc----chhHHhhccccccccccccceeeccccc------
Confidence 1222344555555567788899999999999999999885 7999999999999999999999997432
Q ss_pred cCCCCCcccccccCCCCCcceEEEeeeeccccceeEEEEEEEecCC-CceeeecccCCCCCC---CCCcccCCCCeeeEE
Q 040980 937 RIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDG-DSERVCSVQHGGENL---SGPSLLMPGEEFKKV 1012 (1193)
Q Consensus 937 ~~~~~~~~e~l~~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~-~~~~~~~~~~~~~~~---l~~~~L~~gd~~~~~ 1012 (1193)
++ .+++.-.|.++++|.+..|+.+++++|+++.. ++...++.++.++.. -.+++|+|.|.++++
T Consensus 122 ----------ls--sv~~dvfleaqien~s~a~mflekv~ldps~~ynvt~i~~~~e~gdcvstfg~~~~lkp~d~rq~l 189 (348)
T KOG2625|consen 122 ----------LS--SVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVTEIAHEDEAGDCVSTFGSGALLKPKDIRQFL 189 (348)
T ss_pred ----------cc--ccchhhhhhhhhhcccccchhhhhhccCchheecceeecchhhccccccccccccccCccchhhhe
Confidence 11 13444458999999999999999999998854 344444444444322 145899999999999
Q ss_pred EEEeeCC--------CCCcccceEEEEEEEcCCCCCCCCCCCCccceEeeeeccCCccccCCCeEEEeecCCceeeCCeE
Q 040980 1013 FTIVPKV--------ESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPF 1084 (1193)
Q Consensus 1013 f~l~p~~--------~~~~~~~G~~~I~WrR~~~~~~~~~~~~~~~~~~s~~~LP~v~~~~~pl~v~~~~P~~~~vg~p~ 1084 (1193)
|||+|+. -...+++|+++|.||.+.|++|+ ++++..++..|. .+|.+|.++ .+|+++.+.+||
T Consensus 190 ~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgekgr------lqts~lqriapg--ygdvrlsle-~~p~~vdleepf 260 (348)
T KOG2625|consen 190 FCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEKGR------LQTSALQRIAPG--YGDVRLSLE-AIPACVDLEEPF 260 (348)
T ss_pred eecCchHHHHHhhccccccceeeeeEEEeecccccccc------chHHHHHhhcCC--CCceEEEee-ccccccccCCCe
Confidence 9999974 15688999999999999999998 566666666665 677777776 579999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEEeC--CCeEEeccCCCcE-EeCCCCeEEEEEEEEECcccceecCeeEEEeccccccccCC
Q 040980 1085 TYTIKIWNQTKLLQEVKFCVADA--QSFVLSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQAS 1161 (1193)
Q Consensus 1085 ~~~~~I~N~T~~~~~l~l~le~s--~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~~~~~~~~~~~ 1161 (1193)
.++|+|+|++++.+++.++|+.. ....|+|.....+ .+.|.+...+.++++|...|.|.+.+++++|+..+++|.+
T Consensus 261 ~iscki~ncseraldl~l~l~~~nnrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf~kr~ye~- 339 (348)
T KOG2625|consen 261 EISCKITNCSERALDLQLELCNPNNRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTFLKRIYEH- 339 (348)
T ss_pred EEEEEEcccchhhhhhhhhhcCCCCceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhhhhhhhcc-
Confidence 99999999999999999999984 4599999999999 9999999999999999999999999999999999999999
Q ss_pred CCccEEEEe
Q 040980 1162 NTASTVFVF 1170 (1193)
Q Consensus 1162 ~~~~~VfV~ 1170 (1193)
++.++|||.
T Consensus 340 ddiaqi~v~ 348 (348)
T KOG2625|consen 340 DDIAQICVS 348 (348)
T ss_pred cchHHhhcC
Confidence 999999983
No 5
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=99.79 E-value=1.2e-17 Score=184.35 Aligned_cols=215 Identities=18% Similarity=0.268 Sum_probs=154.1
Q ss_pred CCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCchhhhhcc
Q 040980 775 ASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQ 854 (1193)
Q Consensus 775 ~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~~i~~l~~ 854 (1193)
.-+-+++||.|.--|.|.|....... .+.|.+- +..+.+. ..+.+.....+
T Consensus 6 sfG~iylGEtF~~~l~~~N~s~~~v~-~v~ikve------mqT~s~~-------~r~~L~~~~~~--------------- 56 (249)
T PF06159_consen 6 SFGSIYLGETFSCYLSVNNDSNKPVR-NVRIKVE------MQTPSQS-------LRLPLSDNENS--------------- 56 (249)
T ss_pred ccCCEeecCCEEEEEEeecCCCCceE-EeEEEEE------EeCCCCC-------ccccCCCCccc---------------
Confidence 34779999999999999997654332 3333321 2222220 13333211110
Q ss_pred ccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecCC---CCcccceeEEEEEEEEEEeecceEEeeeeeccccCC
Q 040980 855 SFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPL---NNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRD 931 (1193)
Q Consensus 855 s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~~---~~~~~~~~~~~~k~~~i~v~~Pf~vs~~f~~~~~~~ 931 (1193)
...+..|.||++.+..+.+.+...|.|+|.|+|+|... .+ ....++|.|+|.|.+||+|++||++.-.+.
T Consensus 57 ---~~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~g----~~~tfRK~ykF~v~~PL~VktK~~~~~~~~ 129 (249)
T PF06159_consen 57 ---DSPVASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETSG----ERRTFRKFYKFQVLNPLSVKTKVYNLEDDS 129 (249)
T ss_pred ---cccccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccCC----ccceEeeeeEEeCCCCcEEEEEEEecCCcc
Confidence 01345678999999999999999999999999999876 44 355799999999999999999999852221
Q ss_pred ccccccCCCCCcccccccCCCCCcceEEEeeeeccccceeEEEEEEEecCCCceeeecccCCCCC--CC-------CCcc
Q 040980 932 PLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGEN--LS-------GPSL 1002 (1193)
Q Consensus 932 p~ll~~~~~~~~~e~l~~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~~~~~~~~~~~~~--~l-------~~~~ 1002 (1193)
+. ...+...|+++++|+|..||.|+++.|++.++-....+.......+ .. ...+
T Consensus 130 ~~-----------------~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~ 192 (249)
T PF06159_consen 130 SL-----------------SPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPY 192 (249)
T ss_pred cc-----------------ccceeEEEEEEEEecCCCceEEEEEEeecCCCceeEecccccccccccccccccccCCcce
Confidence 11 1234556999999999999999999999887643333332222111 11 2358
Q ss_pred cCCCCeeeEEEEEeeCCC--------CCcccceEEEEEEEcCCCCCCC
Q 040980 1003 LMPGEEFKKVFTIVPKVE--------SSKLGLGTVCLRWRRDCGIDDH 1042 (1193)
Q Consensus 1003 L~~gd~~~~~f~l~p~~~--------~~~~~~G~~~I~WrR~~~~~~~ 1042 (1193)
|+|||.++++|||.++.. ....++|+++|.||+++|+.|+
T Consensus 193 L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge~Gr 240 (249)
T PF06159_consen 193 LQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGERGR 240 (249)
T ss_pred eCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCCCce
Confidence 999999999999998752 5778999999999999999986
No 6
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=99.54 E-value=6.3e-11 Score=145.21 Aligned_cols=347 Identities=15% Similarity=0.124 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccccCCCccchhhhHHh----HHHHHHHHhhCHHHHHHHHHHHHH
Q 040980 175 LQISLNRLASIF---GELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCF----KVAVYAEFRRDWVEALRFYEDAYH 247 (1193)
Q Consensus 175 l~~~v~~L~~~~---~e~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~F----K~a~~aEfr~d~~~Alk~Ye~AY~ 247 (1193)
+..|+.+|...+ ++--..+|.+.+|.+|.++. ..+|..+..| |+|++-|.-+=.+.|+.-|+.--.
T Consensus 171 Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~-------~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qydel~a 243 (1156)
T KOG1931|consen 171 WNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRN-------SPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQYDELDA 243 (1156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555555433 34445678888888885432 3689999988 899999999999999999988766
Q ss_pred HHHHHhccCCC-----------------------CCCcccHHH--------HHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 248 MLREMIGTSTR-----------------------LPPIQRLVE--------IKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 248 ~L~e~~~~~~~-----------------------~p~~~r~~E--------~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
.+.+.+.+... .|.+....+ ++.+--++-=|+|+++|..|.|-+-.++-
T Consensus 244 ~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~eva~r~ 323 (1156)
T KOG1931|consen 244 EFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFEVASRA 323 (1156)
T ss_pred HHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 66554322100 011111111 11111234446788999988765443333
Q ss_pred HHHHHHhhcc---c--CCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHH
Q 040980 297 HQHNASYKKL---V--GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYL 371 (1193)
Q Consensus 297 ~~Hi~~~~~~---~--G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~ 371 (1193)
-.-+-+|.+- . --++.++.+|.-.| +=+.++..-..+.. ..+-.+| +.-+.|--+.
T Consensus 324 ~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a-----~L~~~e~~~~~~~~--------~~n~~t~------~~~~~~~iw~ 384 (1156)
T KOG1931|consen 324 YELLFSFLQELSLLESSVPLGALKCWEITA-----ALEYLEFTEVSGPL--------LPNIKTE------LFMLCADIWS 384 (1156)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHH-----HHHHHHHhhccccc--------cccccch------HHHHhhhHHH
Confidence 2223333221 1 23444556654333 11222222111100 0000111 2223333444
Q ss_pred HHHHHHHHHHhhccccccccCCC-CCCCCCceeeeccccccccCCccc---CCCCChhhHhHhHhhhCcccccHHHHHHH
Q 040980 372 KEKRSSLEIALSMSESASELDSS-ADSVAPSVYIGQFDRLLEQGDTVS---KQPLTDEDYTRYVIAEGKRFQDTYEILGL 447 (1193)
Q Consensus 372 ~~Rr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gq~~~~~~~~d~~~---~~~l~~~e~~~~al~~~~~~~hs~~ii~L 447 (1193)
..|+++-..|.-..-+++. +.. ..+.-+-.+. ....-+|... -..++.....+.+++ +...-...++++
T Consensus 385 ~ar~kL~~m~~~~~li~d~-~p~~~se~l~~~~~----~~~~l~d~r~~~~ke~~S~~~k~~~~~~--~~~s~~k~~~~l 457 (1156)
T KOG1931|consen 385 YARMKLYGMALLCGLIPDS-DPNYKSEQLKETFV----LSTGLLDNRPTLTKEALSLFNKLEEALQ--RIVSFLKHYLGL 457 (1156)
T ss_pred HHHHHHHHHHHHhccCCCC-CCCccccccceEee----ehhhhhhcccCcchhhhhhHHHHHHHHH--HHHHHHHHHHHH
Confidence 5566554444433333332 111 0001111111 0000111100 001222222222331 123335678999
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 040980 448 LKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEY 527 (1193)
Q Consensus 448 L~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~ 527 (1193)
+..++..|+...+.|.+++++.++++.|...+..++|..++....+.+-.|+|.......+..+..|...+|+..+|.+.
T Consensus 458 ~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~ 537 (1156)
T KOG1931|consen 458 LKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKT 537 (1156)
T ss_pred HHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHccCCCCCCCCCCCCccccCCCCCCCChhhhHHHHHHHHHHHh
Q 040980 528 SLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVS 573 (1193)
Q Consensus 528 ~leLls~~~~~~~~~~~~~~~~~~p~~~~~~~er~~i~~~l~~~l~ 573 (1193)
+.-+.+... +....|..+.+++++..+
T Consensus 538 ~~~ia~~~~-------------------L~~~~r~h~~~k~l~~~~ 564 (1156)
T KOG1931|consen 538 ESSIAKFHD-------------------LQELNRKHLMYKLLGLFE 564 (1156)
T ss_pred hhHHHhhHH-------------------HHHHHHHHHHHHHHhHHH
Confidence 666554211 233556666777776554
No 7
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1e-12 Score=149.16 Aligned_cols=461 Identities=14% Similarity=0.174 Sum_probs=254.4
Q ss_pred CCcHHHHHHHHHHHcCCCCccEEEeCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccchhhhHH
Q 040980 143 NDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYC 222 (1193)
Q Consensus 143 ~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~~~l~~~v~~L~~~~~e~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~ 222 (1193)
+..+.+|+..+|++|+|++|.+ ++-+||++|++||.++.|.+|++.
T Consensus 4 d~~A~~~~~e~~~~~~Lss~Q~-----------------~e~~F~~~~qAfYqQ~~Kti~s~~----------------- 49 (809)
T KOG4386|consen 4 DNLAADRAHELCQACSLSSKQL-----------------LELAFHELCQAFYQQRLKTIRSRQ----------------- 49 (809)
T ss_pred hhhhhhHHHHHHHHhCccHHhh-----------------hchhHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 4678899999999999998876 667899999999999999999652
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 040980 223 FKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNAS 302 (1193)
Q Consensus 223 FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~ 302 (1193)
|.+ +.|...-.+. ...--+|.|+|++... |+.|+.
T Consensus 50 -----------~tH----------q~~l~~~N~~-----------------~~~~~~~~L~F~~s~a------~~~~l~- 84 (809)
T KOG4386|consen 50 -----------DTH----------QGLLKTKNSV-----------------ISTRGMCELCFLHSTA------LEPHLA- 84 (809)
T ss_pred -----------ccc----------hhhhccCCCC-----------------ccccceEEEEeccccc------ccccce-
Confidence 222 2332221221 1122467788887532 234433
Q ss_pred hhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHh
Q 040980 303 YKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIAL 382 (1193)
Q Consensus 303 ~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~ 382 (1193)
.|+-.-|.++|.-.||-+|+.+- ++ | | ..-..++.
T Consensus 85 ----------S~eL~~~kskq~~~~A~~~e~~~--~l-------------------~--------a---n~~Ia~Lk--- 119 (809)
T KOG4386|consen 85 ----------SIELLLWKSKQCYQFAHLFEVAG--GL-------------------S--------A---NTEIAALK--- 119 (809)
T ss_pred ----------eEeeccchhhHHHHHHHHHHHhc--Cc-------------------c--------h---hhHHHHHh---
Confidence 35667899999999999999652 11 1 0 11111111
Q ss_pred hcccccccc-CCCCCC-CCCceeeeccccccccCCcccCCCCChhhHhHh---HhhhCcccccHHHHHHHHHHHHHHHhh
Q 040980 383 SMSESASEL-DSSADS-VAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRY---VIAEGKRFQDTYEILGLLKKSCESYGN 457 (1193)
Q Consensus 383 ~~~~~~~~~-~~~~~~-~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~---al~~~~~~~hs~~ii~LL~kA~~~f~~ 457 (1193)
...++.+ ++.|+. .+...|.|| ++|+..|. .++-.+.+-. +..++--++|.+ +|.++.+|..+|.+
T Consensus 120 --~~a~Q~~~Y~~P~~nS~~~V~~Gq--~~~~~n~~----~~A~~~ve~a~~~~~~q~~~~~~~~-Vis~~~~~~~~~qk 190 (809)
T KOG4386|consen 120 --RNAPQNVPYPSPDANSSSTVFFGQ--RPWRINHE----GLATAEVEAAAVTAIIQRLVVNHEG-VISLLSAALAQYQK 190 (809)
T ss_pred --hcccccCCCCCCCcCccceeEecc--cceeecch----hHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHH
Confidence 1122221 334432 223579999 88887653 2332222222 222322366554 89999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccCCCC
Q 040980 458 HKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVS 537 (1193)
Q Consensus 458 ~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~~~~ 537 (1193)
+|+.||.+..+.+| ...|+.++.++|++++-.+.+.=.- =..+..+|+...-..++...+..+|-.+|+.++-
T Consensus 191 ~~~~~~~k~~mm~~-~t~~~nne~qR~~r~~~~Vv~dna~--~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~---- 263 (809)
T KOG4386|consen 191 YGCLRMKKKVMMEM-NTCYANNEIQRALRFWGLVVKDNAL--PYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMP---- 263 (809)
T ss_pred hhhHHHHHHHHHhh-hhhhcchHHHHHHHHHHHHhccCCC--CCCcchhHHHHHHHHHHHHHHHHHhhhhhheech----
Confidence 99999999999999 5668889999999999988542110 1123345555555555666666666666666552
Q ss_pred CCCCCCCCccccCCCCCCCChhhhHHHHHHHHHHHhccccCCCcc---CCCcccccCC--CCceeee-------eecccc
Q 040980 538 SGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVE---DNNCIKISRD--NPLHLEV-------DLVSPL 605 (1193)
Q Consensus 538 ~~~~~~~~~~~~~~p~~~~~~~er~~i~~~l~~~l~~~~~~~~~~---~~~~~~~~~~--~~~~L~~-------d~~~pl 605 (1193)
+++.+-+...+++..|. ++- +.....+... .+.++.- +...-+
T Consensus 264 ------------------------sD~V~~l~~~~~~~~P~-~~~~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~ 318 (809)
T KOG4386|consen 264 ------------------------SDCVKGLLDVLDGKPPG-SPFPNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIA 318 (809)
T ss_pred ------------------------hhhhhHHHHHhcCCCCC-CCCCChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHH
Confidence 11222233333332211 000 0000000000 0000000 000001
Q ss_pred ceeEEEEEEecC-ceecCCCeEEEEEEEEcCCCceeEecEEEEEEecC----CccEEEEcCCccccccccCCcccccCCC
Q 040980 606 RLVILASVAFHE-QIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQS----ECNFVIINAQRPLLAATNDGLQVHRAES 680 (1193)
Q Consensus 606 ~~~~~~~~~F~~-~~~~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 680 (1193)
-.|.++++.|.. +.+..|..+.+.+.++|.+-.-|+.+.+.++.-.. +.+..-.+++-.....+..|+.++
T Consensus 319 ~l~~Et~~s~~~~qtv~Q~s~~~V~~e~~s~i~q~i~~nd~~~~~~~~k~~~~A~~t~n~~~~li~~~~~~G~v~~---- 394 (809)
T KOG4386|consen 319 ELFLETRVSFLDQQTVEQDSKVAVRVEIVSKIEQVIRLNDVSVHLKAKKFPPDANQTANDADCLIYDPIHLGSVEV---- 394 (809)
T ss_pred HHHHHHHHHHHHHhhhccCceEEeeHHHHHHHHHHHhhcchhheeeeecCCcccccCCCCCcEEEecCCCCcchhh----
Confidence 126788888875 46788899999999999997777777776665321 111111011100111111222221
Q ss_pred CceEeecCCeEEEEEEE-eeccceEEEEEEEEEEeCCcccccccCCCCccccccccccccccccCCCCCCcccccccccc
Q 040980 681 TPLILITNRWLRLTYEI-KSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKA 759 (1193)
Q Consensus 681 ~~l~l~p~~~~~~~~~~-~~~~~g~~~v~~V~l~lg~~~~~~~~~e~~~~~~~~~~W~~~~~~~~~~~~~~~~~is~~~~ 759 (1193)
-.-.|-+ ++...+. +.++.....|+.+.+.||+.+.-.. +++ ....+.+.+...+-+ .
T Consensus 395 --Sks~~~q-~~~~~~~~n~~q~~~~tv~~~t~~l~~a~~~NI------e~~----------~~~~~~~~~~E~~~~--~ 453 (809)
T KOG4386|consen 395 --SKSKPLQ-RVVLLDLKNAKQNWIVTVTKVTLDLGNAIRGNI------EFD----------ENALNRNCHVENIIG--F 453 (809)
T ss_pred --hhhhhhh-hHHHhhccccccceEEEeeehhhhhhhhccCcc------eec----------cccCCcccchheEEE--E
Confidence 0011111 2222222 2457778889999999997522111 011 111222333333333 4
Q ss_pred eeeeCCCCceEEEcCCCCCeeeccEEEEEEEEeeCC
Q 040980 760 THVEEPDPQVDVDLGASGPALVGESFMIPVTVASRG 795 (1193)
Q Consensus 760 ~~I~~~~p~v~v~~~~~~paL~gE~~~i~i~V~n~~ 795 (1193)
.+|..-+..+.+...-...+++||... +|++|.-
T Consensus 454 lki~~~kts~~~e~~~kv~~~~Ge~ts--LT~rn~~ 487 (809)
T KOG4386|consen 454 LKIGVAKTSVKLESVEKVDCLIGEVTS--LTIRNTC 487 (809)
T ss_pred EEeeechhhhhhhhhhhcCcccccccc--eeeeccc
Confidence 455555555555555667889999988 5666654
No 8
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.12 E-value=3.5e-06 Score=113.09 Aligned_cols=615 Identities=13% Similarity=0.130 Sum_probs=325.0
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHh-CCCH-HHHHHHHHHHHHHHHh---------------cC-cHHHHH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFA-LDDF-NNAKQLFDGVANQYRQ---------------EG-WVTLLW 505 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~-~gd~-~~Al~~l~~~~~~Yr~---------------eg-W~~L~~ 505 (1193)
-+.++..-.+-|..-|..|-.+++..+++..+.. ..+| +....+++.+...|+- .+ |..|--
T Consensus 444 qi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi 523 (1185)
T PF08626_consen 444 QIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQI 523 (1185)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHH
Confidence 4566667777888889999999999999988765 2222 2333477777666643 12 999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHccCCCCCCCCCCCCccccCCCCCCCChhhhHHHHHHHHHHHhccccC-CCcc-C
Q 040980 506 EVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGL-ASVE-D 583 (1193)
Q Consensus 506 ~~L~~l~~Ca~~l~~~~~~v~~~leLls~~~~~~~~~~~~~~~~~~p~~~~~~~er~~i~~~l~~~l~~~~~~-~~~~-~ 583 (1193)
.+|..+..++.+++|....++++..||.... ..++.+|+.++...+.+........ .... .
T Consensus 524 ~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~-----------------~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~ 586 (1185)
T PF08626_consen 524 DVLKECINIAEALGDFAGVLRFSSLLLRTYS-----------------PLLSPDEQIRLANNLQRTSAAANLGNSDLSAE 586 (1185)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-----------------hhCCHHHHHHHHHHHHHHhhhhccCCcccccc
Confidence 9999999999999999999999999986321 2266778888877777665211100 0000 0
Q ss_pred CCcccccCC------CCce------------eeeee--cccc-ceeEE---EEEEecCceecCCCeEEEEEEEEcCCCce
Q 040980 584 NNCIKISRD------NPLH------------LEVDL--VSPL-RLVIL---ASVAFHEQIIKPGVSTLITVSLLSQLPLT 639 (1193)
Q Consensus 584 ~~~~~~~~~------~~~~------------L~~d~--~~pl-~~~~~---~~~~F~~~~~~~g~~~~l~v~L~S~~p~~ 639 (1193)
=|.--+..+ -|.. ...+. -.|+ .+|-. ....-......+||++++.|+|+.=++-+
T Consensus 587 Ywdpflvr~v~l~~~iP~~~~i~~~~~~~~~~~~~~~~~~pFYnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fe 666 (1185)
T PF08626_consen 587 YWDPFLVRDVKLESSIPLKPDILPPHPRKSEASSQSINKGPFYNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFE 666 (1185)
T ss_pred cCCCceeeeeecccCCCCccchhhhhhhhhhhcccCCCCCCcCChhhcCCcccccccCccEEcCCeEEEEEEEECCccce
Confidence 000000000 0000 00000 0111 00111 00011234677899999999999999999
Q ss_pred eEecEEEEEEecCCccEEEEcCCccccccccCCcccccCCCCceEe-ecCCeEEEEEEEeeccceEEEEEEEEEEeCCcc
Q 040980 640 VEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLIL-ITNRWLRLTYEIKSEQSGKLECISVVAKMGPHF 718 (1193)
Q Consensus 640 I~~~~l~V~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~l-~p~~~~~~~~~~~~~~~g~~~v~~V~l~lg~~~ 718 (1193)
|.+++|++.-++....-.. .++.+ .|.....+.+..++...|.++|.++..++++-.
T Consensus 667 l~I~~I~L~~egv~fes~~----------------------~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~ 724 (1185)
T PF08626_consen 667 LEISSISLSTEGVPFESYP----------------------VSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCR 724 (1185)
T ss_pred EEEEEEEEEEcCCccccce----------------------eeeEecCCCcceEEEEEEEECccceEEEEEEEEEEcccc
Confidence 9999999987776531100 12445 788999999999999999999999999988643
Q ss_pred cccccCCCCccccccccc-ccccc-c-cCCC---CCCccc-ccc------cccceeeeCCCCceEEEcC---CC-CCeee
Q 040980 719 TICCRAESPASMEDLPLW-KFEDR-V-ETFP---TKDPAL-AFS------GQKATHVEEPDPQVDVDLG---AS-GPALV 781 (1193)
Q Consensus 719 ~~~~~~e~~~~~~~~~~W-~~~~~-~-~~~~---~~~~~~-~is------~~~~~~I~~~~p~v~v~~~---~~-~paL~ 781 (1193)
..|.-.. ...| .++.. . +... .++... .+. ..-.++|+|+-|.+.|... +. .=.|-
T Consensus 725 ~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlle 797 (1185)
T PF08626_consen 725 EEFFPIF-------KSEWGSIKGKKLKDKFRKGSRLDKPSPPLESESPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLE 797 (1185)
T ss_pred cceeccc-------CcccchhhhhhcccccccccccccccccccccccccCcceEEEECCCCeEEEEeccCCCcceEEEC
Confidence 3332110 1122 00000 0 0000 000000 000 1234579999999999875 22 24588
Q ss_pred ccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCcc-ccceEEEccccCCCccccCCchhhhhccccceee
Q 040980 782 GESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSM-ESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVS 860 (1193)
Q Consensus 782 gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~-~s~~v~l~g~~~~~~~~~~~~~i~~l~~s~~~i~ 860 (1193)
||...+.|+++|.+ ...-..+.++..|..-..+.......+++. +...+++ .. .+++ .+-...
T Consensus 798 GE~~~~~ItL~N~S-~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~-------------~l-~~~~-~~~i~~ 861 (1185)
T PF08626_consen 798 GEKQTFTITLRNTS-SVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEW-------------QL-FKLP-AFRILN 861 (1185)
T ss_pred CcEEEEEEEEEECC-ccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhh-------------hh-hcCc-ceeecc
Confidence 99999999999999 444446666665532110100000111100 0111111 11 1111 011222
Q ss_pred cCCCCCCCeEEEEEEEEEeCC--cceEEEEEEEecCCCCcccceeEEEEEEE----EEEeecceEEe-eeeeccccCCcc
Q 040980 861 IPFLKSGESWSCKLEIKWHRP--KPVMLFVSLGYSPLNNESTAQKVHVHKSL----QIEGMAAIAVG-HRFMLPFRRDPL 933 (1193)
Q Consensus 861 v~~l~~ges~~~~l~i~~~~~--g~~~l~vsv~Y~~~~~~~~~~~~~~~k~~----~i~v~~Pf~vs-~~f~~~~~~~p~ 933 (1193)
-+.++||++.+..+.+..... .-.-..+.+.|.... +.. ... ..|.+ ++.|..-+++. ..+++ +
T Consensus 862 ~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~-~~~-~~~-y~Rql~ipl~vtV~~slev~~~dilp------~ 932 (1185)
T PF08626_consen 862 KPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSG-EDS-STF-YTRQLSIPLTVTVNPSLEVTRCDILP------L 932 (1185)
T ss_pred cCccCCCCEEEEEEEecCcccccceeeeeEEEEecccC-CCC-CCC-eeEEEEEEEEEEEeceEEEeeeeEEe------c
Confidence 237889999997776533322 134456667776332 111 111 11222 22222211111 11121 1
Q ss_pred ccccCCCCCcccc------cc---cCCCCCcceEEEeeeeccccceeEEEEEEEecCCCceeeecccCCCCC--------
Q 040980 934 LLSRIKPVSDSEQ------LA---SLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGEN-------- 996 (1193)
Q Consensus 934 ll~~~~~~~~~e~------l~---~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~~~~~~~~~~~~~-------- 996 (1193)
. .+..+....+. +. ....++-++|..++.|..+.++.+ .+...++.....-.++++.+.
T Consensus 933 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~~~~v---~l~~~~~~~~~~~~I~pg~t~Ri~vPi~R 1008 (1185)
T PF08626_consen 933 N-SDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPNPLSV---NLHYDEDFSSSEITIEPGHTSRIIVPIKR 1008 (1185)
T ss_pred c-cccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCCceEE---EEEeccCccccceEECCCCeEEEEEEecc
Confidence 0 00000000000 00 113445568999999998888863 222211100000011111100
Q ss_pred ------CCC-CcccCCCCeeeEEEE-EeeCC----CC----CcccceEEEEEEEcCCCCCCCCCCCCccceEeeeeccCC
Q 040980 997 ------LSG-PSLLMPGEEFKKVFT-IVPKV----ES----SKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPD 1060 (1193)
Q Consensus 997 ------~l~-~~~L~~gd~~~~~f~-l~p~~----~~----~~~~~G~~~I~WrR~~~~~~~~~~~~~~~~~~s~~~LP~ 1060 (1193)
... ....+....++++=. +.+.. +. ..--+.++..+|+-..+.+|. -+.....--+..++-.
T Consensus 1009 i~l~~~~~~~~pip~l~~~rqfv~sk~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~--i~lR~~irLt~~mv~~ 1086 (1185)
T PF08626_consen 1009 IYLEDPDFSFKPIPSLSRNRQFVVSKLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGE--IDLRGIIRLTPRMVDI 1086 (1185)
T ss_pred cccCCcccccCcCCCcccCceeEECCCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEE--EEcccccccCHHHHHh
Confidence 000 111222233333211 00100 00 113446899999965443432 0110010124445556
Q ss_pred ccccCCCeEEEeecCC--c---------eeeCCeEEEEEEEEcCCCceEEEEEEEEe-----------CCCeEEeccCCC
Q 040980 1061 VEVELSPLVVSLECPP--Y---------AVLGEPFTYTIKIWNQTKLLQEVKFCVAD-----------AQSFVLSGVHND 1118 (1193)
Q Consensus 1061 v~~~~~pl~v~~~~P~--~---------~~vg~p~~~~~~I~N~T~~~~~l~l~le~-----------s~~F~fsG~k~~ 1118 (1193)
+..+...+.+.+.... . +.+++.++++++|+|+|.+...+.+...- +.-++|.|.-|.
T Consensus 1087 L~~~~i~i~~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~l~~~~~~~~~~~~~~~~~~~ril~~G~Lq~ 1166 (1185)
T PF08626_consen 1087 LRLDPIQIDFSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPISLRLQPSLDHQNGNVALDLDRRILWNGSLQQ 1166 (1185)
T ss_pred hccCccceEEEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCceeeEeeeeccCCCcccccCcCCeEEEEccCcc
Confidence 6667776666543222 1 45899999999999999998764332211 234999999999
Q ss_pred cE-EeCCCCeEEEEEEEE
Q 040980 1119 TV-FVLPKSKHILCYKVV 1135 (1193)
Q Consensus 1119 ~l-~llP~s~~~~~~~l~ 1135 (1193)
.+ .|.|+++.++.+.++
T Consensus 1167 ~l~~l~p~~~~~~~~~li 1184 (1185)
T PF08626_consen 1167 PLPELEPGESTEHELSLI 1184 (1185)
T ss_pred cccccCCCceEEEEEEEE
Confidence 99 889999999888765
No 9
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=98.66 E-value=2.7e-08 Score=81.76 Aligned_cols=55 Identities=27% Similarity=0.577 Sum_probs=50.2
Q ss_pred EcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccceecCeeEE
Q 040980 1091 WNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTV 1149 (1193)
Q Consensus 1091 ~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~LP~l~l 1149 (1193)
+|.|+.+ ++++.|++|+++|.++.++.++|+...++.|+++||++|+++||+++|
T Consensus 3 ~~~s~ll----i~V~~n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I~I 57 (57)
T PF12742_consen 3 QKDSELL----IEVDKNDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKINI 57 (57)
T ss_pred ccccceE----EEEcCCCceEEEccceeEEEEccCceEEEEEEEEEeehheecCccccC
Confidence 4555555 889999999999999999999999999999999999999999999864
No 10
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=98.49 E-value=1e-06 Score=90.27 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=70.5
Q ss_pred CCceeeCCeEEEEEEEEcC-----------CCceEEEEEEEEe-CCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccce
Q 040980 1075 PPYAVLGEPFTYTIKIWNQ-----------TKLLQEVKFCVAD-AQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLL 1142 (1193)
Q Consensus 1075 P~~~~vg~p~~~~~~I~N~-----------T~~~~~l~l~le~-s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~ 1142 (1193)
+..+++|+|+.++++|+|. .....++.+.+.. ++.|+.+|.|+..|.+..++.+++.+.|+||.+|++
T Consensus 24 ~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~~~~WlV~Grrrg~f~~~~~~~~~~~l~LIPL~~G~L 103 (147)
T PF12584_consen 24 PPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVADSDNWLVSGRRRGVFSLSDGSEHEIPLTLIPLRAGYL 103 (147)
T ss_pred CcceEeCCeEEEEEEEEEcccCCccccccccCCCccEEEEEecCCCcEEEeccCcceEEecCCCeEEEEEEEEeccccee
Confidence 4467999999999999996 2445688888855 788999999999999999999999999999999999
Q ss_pred ecCeeEEEecc
Q 040980 1143 QLPKVTVISVR 1153 (1193)
Q Consensus 1143 ~LP~l~l~~~~ 1153 (1193)
.||++.|+...
T Consensus 104 ~lP~V~i~~~~ 114 (147)
T PF12584_consen 104 PLPKVEIRPYD 114 (147)
T ss_pred cCCEEEEEecc
Confidence 99999998876
No 11
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=97.95 E-value=0.00049 Score=79.10 Aligned_cols=196 Identities=15% Similarity=0.265 Sum_probs=129.1
Q ss_pred cceeEEEEEEEecCCCceeeecccCCCCCCCCCcccCCCCeeeEEEEEeeCCC----C----------------------
Q 040980 968 VSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVE----S---------------------- 1021 (1193)
Q Consensus 968 ~pl~i~sv~l~~~~~~~~~~~~~~~~~~~~l~~~~L~~gd~~~~~f~l~p~~~----~---------------------- 1021 (1193)
..+.++++++...++.++.++. . +...+..+.++|.++.+|.|.+... +
T Consensus 8 ~~~~~~~i~l~~~~g~v~~l~~----~-~~~lPl~~~~~D~~t~~YkL~~~~~~~~~~~~~~~~~l~I~l~~~v~~~~~~ 82 (306)
T PF12735_consen 8 CEFSIESIELSLKNGTVEPLNQ----S-PLKLPLRCVPHDSYTLVYKLTPNEQPSSPSTTSKSSRLDISLEAQVLVPDNN 82 (306)
T ss_pred EEEEEEEEEEEecCceEeecCC----C-CCcCceEecCCCcEEEEEEecCccccccccCcccceEEEEEEEEEEEEeccc
Confidence 3457888999888654443321 1 1237889999999999999988321 0
Q ss_pred CcccceEEEEEEEcCCCCCC------------CCCCCCcc---c--------------eEeeeeccCCccccCCCeEEEe
Q 040980 1022 SKLGLGTVCLRWRRDCGIDD------------HSGSCETE---A--------------WVVSKHKLPDVEVELSPLVVSL 1072 (1193)
Q Consensus 1022 ~~~~~G~~~I~WrR~~~~~~------------~~~~~~~~---~--------------~~~s~~~LP~v~~~~~pl~v~~ 1072 (1193)
....--++...|+..-.-.- .++..... . ...+...-..-......+.++.
T Consensus 83 ~~~~~~~I~t~W~t~vdf~~~~pp~s~~l~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~gv~~sF 162 (306)
T PF12735_consen 83 SDNCSPRISTSWSTSVDFSLPAPPISQSLQRSNRPSSLSISPSQSSSPSVSPSVIRPSSSTTSLRATNSNSSLSGVTFSF 162 (306)
T ss_pred CCCCCccEEEeEcCcccccCCCCCCchhhccCCCCCccccCCCccccCCCcccccccccccccccccccCccccCeEEEE
Confidence 01112457788986421100 00000000 0 0000000011223555788888
Q ss_pred ecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCC---------------------------C----------------
Q 040980 1073 ECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQ---------------------------S---------------- 1109 (1193)
Q Consensus 1073 ~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~---------------------------~---------------- 1109 (1193)
--|..+.+|++|++++.|.|++....+|.+.+.+.- +
T Consensus 163 ~gp~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~~~~~~~~~ 242 (306)
T PF12735_consen 163 SGPSSVKVGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQAMQKYSSV 242 (306)
T ss_pred eCCceEecCCeEEEEEEEEECCCCCeeEEEEecCccccccccccCCCCCcccccccccccccccceehhHHHHhhhhccc
Confidence 899999999999999999999999999999888710 0
Q ss_pred ----eEEeccCCCcE-EeCCCCeEEEEEEEEECcccceecCeeEEEeccccccccCCCCccEEEE
Q 040980 1110 ----FVLSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFV 1169 (1193)
Q Consensus 1110 ----F~fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~~~~~~~~~~~~~~~~VfV 1169 (1193)
=+.+=....++ .|.|++.+++.+.++|+..|+..|++|+|.|...+..+.. -+.-.|||
T Consensus 243 ~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di-~~l~~IvV 306 (306)
T PF12735_consen 243 EESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDI-GDLPDIVV 306 (306)
T ss_pred ccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEe-CCCceEEC
Confidence 02222235777 8999999999999999999999999999999988776665 33344443
No 12
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.19 E-value=0.035 Score=63.38 Aligned_cols=96 Identities=22% Similarity=0.191 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFAL-DDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~-gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l 518 (1193)
+....++++.+|++.|...|+.+.+..+...+|+.|... |++++|+.+|++++..|+.++-......++..+..++.++
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHccCC
Q 040980 519 GIVRDFVEYSLEMAALP 535 (1193)
Q Consensus 519 ~~~~~~v~~~leLls~~ 535 (1193)
|+-++-+..--+.....
T Consensus 169 ~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99998888877776543
No 13
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.92 E-value=1.9 Score=52.94 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=152.3
Q ss_pred chhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 216 DLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 216 ~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
.|.+... +|.....+++.+.|...++.|-+.|.+..+.. -..|+..++ .+-..|...+++.+|+.-
T Consensus 198 ~~~~~~~--La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-----------hl~va~~l~-~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 198 RLRTLRN--LAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-----------HLVVASMLN-ILALVYRSLGKYDEAVNL 263 (508)
T ss_pred HHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-----------CHHHHHHHH-HHHHHHHHhccHHHHHHH
Confidence 3544443 99999999999999999999999988776633 233444444 556678889999999999
Q ss_pred HHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 040980 296 FHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKR 375 (1193)
Q Consensus 296 ~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr 375 (1193)
|.+=...+.+..|.... + ++-=+.=+|.|....-+ |..|..|..+..
T Consensus 264 y~~AL~i~e~~~G~~h~---~---va~~l~nLa~ly~~~GK---------------------------f~EA~~~~e~Al 310 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHP---A---VAATLNNLAVLYYKQGK---------------------------FAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHhcCCCCH---H---HHHHHHHHHHHHhccCC---------------------------hHHHHHHHHHHH
Confidence 99999988888887752 1 11222233333322111 455666655555
Q ss_pred HHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhH-hHh-hhCcccccHHHHHHHHHHHHH
Q 040980 376 SSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTR-YVI-AEGKRFQDTYEILGLLKKSCE 453 (1193)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~-~al-~~~~~~~hs~~ii~LL~kA~~ 453 (1193)
+..+.. .+...+ -++. ...+ .++ +...+ -...+.++.+|.+
T Consensus 311 ~I~~~~----------~~~~~~-----~v~~-------------------~l~~~~~~~~~~~~---~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 311 EIYEKL----------LGASHP-----EVAA-------------------QLSELAAILQSMNE---YEEAKKLLQKALK 353 (508)
T ss_pred HHHHHh----------hccChH-----HHHH-------------------HHHHHHHHHHHhcc---hhHHHHHHHHHHH
Confidence 443320 100000 0000 0111 111 11222 3567889999999
Q ss_pred HHhhc-Ccch-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 040980 454 SYGNH-KARR-MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE--GWVTLLWEVLGYLRECSRKQGIVRDFVEYSL 529 (1193)
Q Consensus 454 ~f~~~-~~~R-~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e--gW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~l 529 (1193)
.|... ++.. +...+..+||+.|++.|+|+.|..+|++++.--|.- +-..-....+|++..-+.+++...+-...-.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 99964 6666 999999999999999999999999999987655432 2355667778888777788887775555544
Q ss_pred HHc
Q 040980 530 EMA 532 (1193)
Q Consensus 530 eLl 532 (1193)
|-.
T Consensus 434 ~~~ 436 (508)
T KOG1840|consen 434 EAK 436 (508)
T ss_pred HHH
Confidence 433
No 14
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.33 E-value=0.3 Score=43.73 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
...+...+|..|...|+|++|+.+|+++...++.-| .......++..+..|+..+|+.++-+.+.-+.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678999999999999999999999987776655 555568889999999999999887776655443
No 15
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.2 Score=54.25 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFAL-DDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~-gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
....+++|.+|++-|+..|+-||+..-..+||+.|-.- .|+++|+.+|+.++..|..|-=......++.+...=+-+++
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le 168 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE 168 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999988765 89999999999999999999777777777666665555665
Q ss_pred ChhHHHHHHHHHc
Q 040980 520 IVRDFVEYSLEMA 532 (1193)
Q Consensus 520 ~~~~~v~~~leLl 532 (1193)
.-...+.+--++.
T Consensus 169 qY~~Ai~iyeqva 181 (288)
T KOG1586|consen 169 QYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555433333
No 16
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.14 E-value=0.38 Score=51.06 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=74.5
Q ss_pred cCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEe--CCCeE-EeccCCCcE-EeCCCCeEEEEEEEEECcccceecCeeE
Q 040980 1074 CPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVAD--AQSFV-LSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQLPKVT 1148 (1193)
Q Consensus 1074 ~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~--s~~F~-fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~LP~l~ 1148 (1193)
++.+...|+-++++|.|.|.-... .++++.=+. .++|- .+|....++ +|.||+.....|.+.|...|...+..-.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~ 109 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAV 109 (181)
T ss_pred ccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEE
Confidence 355788899999999999997765 666654322 34554 789899999 9999999999999999999999999888
Q ss_pred EEecc--cc--ccccCCCCccEEEEecCC
Q 040980 1149 VISVR--YS--AEFQASNTASTVFVFPSK 1173 (1193)
Q Consensus 1149 l~~~~--~~--~~~~~~~~~~~VfV~P~~ 1173 (1193)
|+-.. .+ .....+..+....|++..
T Consensus 110 VtY~~~~~~~~~~~a~Ss~~~~~~I~~~~ 138 (181)
T PF05753_consen 110 VTYRDSEGAKELQVAYSSPPGEGDILAER 138 (181)
T ss_pred EEEECCCCCceeEEEEecCCCcceEEecc
Confidence 86532 11 122233566677776643
No 17
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=20 Score=46.35 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccCCCCCCCCCCCCccccCCCCCCCChhhhHHHHHHHHHHHhccccCC
Q 040980 500 WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLA 579 (1193)
Q Consensus 500 W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~~~~~~~~~~~~~~~~~~p~~~~~~~er~~i~~~l~~~l~~~~~~~ 579 (1193)
|..|--.+|..+...+.+.||.+..+..+--|+..+. ..++.++...+++++.+........-
T Consensus 557 w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yy-----------------pll~sS~q~~Lfk~l~n~~~~~~s~t 619 (1235)
T KOG1953|consen 557 WSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYY-----------------PLLSSSQQISLFKALRNTYLFASSAT 619 (1235)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh-----------------hccChhhhHHHHHHHHhHHhhccccc
Confidence 8888889999999999999998876666655654332 22455777888888877643321110
Q ss_pred Cc-c----CCCcccccC----CCCce-----eee----------eeccccceeEEEEEEecCc------eecCCCeEEEE
Q 040980 580 SV-E----DNNCIKISR----DNPLH-----LEV----------DLVSPLRLVILASVAFHEQ------IIKPGVSTLIT 629 (1193)
Q Consensus 580 ~~-~----~~~~~~~~~----~~~~~-----L~~----------d~~~pl~~~~~~~~~F~~~------~~~~g~~~~l~ 629 (1193)
+- | +.+.+-+.. +-|+. ++. ....+ .+|+-.-+.|.+. ..-+|+++++.
T Consensus 620 s~~~~i~~~d~~iild~~~lt~fPliss~~vlel~~Nrart~~pn~~e~-spFiytpfsk~~dN~~~~LvwVvdepvef~ 698 (1235)
T KOG1953|consen 620 SYWDPIHINDPVIILDPFMLTDFPLISSSEVLELIHNRARTGLPNSIEK-SPFIYTPFSKRQDNNQSKLVWVVDEPVEFS 698 (1235)
T ss_pred ccccceEecCccEecCcccccccccccChhHHHHHhcccccCCCccccc-CceEeccccccccCccceEEEEeCCceEEE
Confidence 00 0 001000000 00000 000 00001 1357777666543 35789999999
Q ss_pred EEEEcCCCceeEecEEEEEEecCCccEEEEcCCccccccccCCcccccCCCCceEeecCCe-EEEEEEEeeccceEEEEE
Q 040980 630 VSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRW-LRLTYEIKSEQSGKLECI 708 (1193)
Q Consensus 630 v~L~S~~p~~I~~~~l~V~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~l~p~~~-~~~~~~~~~~~~g~~~v~ 708 (1193)
|+++.-+..+++++++.+.-.+.. +...+. .+.+.|+.- .++++.-.|...|.+.|.
T Consensus 699 v~v~Np~~fdl~V~Di~L~~egvn--F~~~~v--------------------s~~~Ppns~~e~Irl~g~P~e~gpl~i~ 756 (1235)
T KOG1953|consen 699 VYVRNPLSFDLEVQDIHLETEGVN--FKCSHV--------------------SFTMPPNSIAERIRLTGTPTETGPLHIV 756 (1235)
T ss_pred EEEcCccceeEEEeeEEEEecccc--ceeeee--------------------eeecCcccccceEEEeccccccCceeee
Confidence 999999999999999988876654 222222 255556654 567777677777776666
Q ss_pred EEEEEe-CCcccccc----cCCCCccccccccccccccccCCCCCCcccccccccceeeeCCCCceEEEcCCC-----CC
Q 040980 709 SVVAKM-GPHFTICC----RAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGAS-----GP 778 (1193)
Q Consensus 709 ~V~l~l-g~~~~~~~----~~e~~~~~~~~~~W~~~~~~~~~~~~~~~~~is~~~~~~I~~~~p~v~v~~~~~-----~p 778 (1193)
.-+... |-+. .|. .+....+ .+ +. ..+.+...+.+..-+.|.|+-|+..+.-+.. --
T Consensus 757 gy~v~cfg~~~-~lq~f~~~gd~~~s---~~-------v~--~e~~kl~~vyl~~~i~ilP~~P~~~l~~d~k~~s~~~i 823 (1235)
T KOG1953|consen 757 GYRVKCFGCEP-ILQYFYEAGDKHKS---LH-------VY--LEKSKLVNVYLRSLITILPLWPYFPLKKDLKTKSFDCI 823 (1235)
T ss_pred eEEEEEeeech-HHHHHHhcccccCC---cc-------ce--eccchhheeecccccccCCCcccchhhhcccCCCccEE
Confidence 655432 2111 110 1110000 00 00 0011112344555567888888776654432 34
Q ss_pred eeeccEEEEEEEEeeCCc
Q 040980 779 ALVGESFMIPVTVASRGH 796 (1193)
Q Consensus 779 aL~gE~~~i~i~V~n~~~ 796 (1193)
.+-|+.+...|+|+|++.
T Consensus 824 vy~Gq~~d~~Itv~N~s~ 841 (1235)
T KOG1953|consen 824 VYAGQPTDLSITVQNLSS 841 (1235)
T ss_pred EEcCCcceEEEEEEecCc
Confidence 577999999999999986
No 18
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=91.49 E-value=0.55 Score=45.31 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=53.7
Q ss_pred EEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEecc------C-CCcEEeCCCCeEEEEEEEEECcccc
Q 040980 1070 VSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGV------H-NDTVFVLPKSKHILCYKVVPLGSGL 1141 (1193)
Q Consensus 1070 v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~------k-~~~l~llP~s~~~~~~~l~PL~~G~ 1141 (1193)
+.++++..+.+|++|++.+.++|+++.. .++.+.|.. ....++|. + ...+.|.|+++..+++.+.|-..|.
T Consensus 3 ~~i~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~-~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 3 IKIKLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCA-FTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp EEEEEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEE-EEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHEE
T ss_pred EEEEECCCccCCCCEEEEEEEEeCCcCccccceeEEEE-EEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEec
Confidence 4667788899999999999999999998 887777743 12223344 2 3344999999999999999999998
Q ss_pred eec
Q 040980 1142 LQL 1144 (1193)
Q Consensus 1142 ~~L 1144 (1193)
.++
T Consensus 82 ~~~ 84 (107)
T PF00927_consen 82 KQL 84 (107)
T ss_dssp ECC
T ss_pred chh
Confidence 443
No 19
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.33 E-value=1.2 Score=39.93 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhcCcch-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 442 YEILGLLKKSCESYGNHKARR-MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R-~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
..-++.+.+|++.+...+... ........||..|...|++++|+++|+++...+++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 22 DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 457899999999987787654 35788999999999999999999999999887753
No 20
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.99 E-value=7.4 Score=44.37 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHH
Q 040980 439 QDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGW-VTLLWEVLGYLRECSRK 517 (1193)
Q Consensus 439 ~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW-~~L~~~~L~~l~~Ca~~ 517 (1193)
.+-...++++.+|.+.|...+..+.+..+...+|..+..+|+|++|+.+|+++...+...+= ..=....+....-|+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999876643321 11133344445558888
Q ss_pred cCChhHHHHHHHHHc
Q 040980 518 QGIVRDFVEYSLEMA 532 (1193)
Q Consensus 518 l~~~~~~v~~~leLl 532 (1193)
.||....-...=+..
T Consensus 209 ~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 209 MGDYVAARKALERYC 223 (282)
T ss_dssp TT-HHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHH
Confidence 888654444333344
No 21
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=89.72 E-value=18 Score=45.44 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CCCcceEEEeeeeccccceeEEEEEEEecCCCceeeecccC-------C------CCCCCCCcccCCCCeeeEEEEEeeC
Q 040980 952 LNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQH-------G------GENLSGPSLLMPGEEFKKVFTIVPK 1018 (1193)
Q Consensus 952 ~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~~~~~~~~~-------~------~~~~l~~~~L~~gd~~~~~f~l~p~ 1018 (1193)
++++..+.+.+.+..+.|+.+.++.+..++......+.... . ..+...+..|.||....+-|.+.++
T Consensus 25 ~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~~~ 104 (554)
T PF07919_consen 25 VGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFVPR 104 (554)
T ss_pred CCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEecc
Confidence 45555678888888899999999999888542222222111 0 0011234688999987777777665
Q ss_pred C---C------CCcccce----EEEEEEEcCCCCCCCCC-C-CCccceEeeee----ccCCccccCCC--eEEEe-ecCC
Q 040980 1019 V---E------SSKLGLG----TVCLRWRRDCGIDDHSG-S-CETEAWVVSKH----KLPDVEVELSP--LVVSL-ECPP 1076 (1193)
Q Consensus 1019 ~---~------~~~~~~G----~~~I~WrR~~~~~~~~~-~-~~~~~~~~s~~----~LP~v~~~~~p--l~v~~-~~P~ 1076 (1193)
. . +..+.+| .+.+.|+-..+...... . ..........+ ..+.+.+...| +.|.+ ..-+
T Consensus 105 ~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~I~~~~~~~ 184 (554)
T PF07919_consen 105 EQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVSIKLPNHKP 184 (554)
T ss_pred ccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEECCCCCeEEEeCCCCC
Confidence 3 1 2223333 24445665422111100 0 00001111122 23334444444 44444 4446
Q ss_pred ceeeCCeEEEEEEEEcCCCceEEE--EEEEE-e--------CCC----eEEeccC-------CCcE-EeCCCCeEEEEEE
Q 040980 1077 YAVLGEPFTYTIKIWNQTKLLQEV--KFCVA-D--------AQS----FVLSGVH-------NDTV-FVLPKSKHILCYK 1133 (1193)
Q Consensus 1077 ~~~vg~p~~~~~~I~N~T~~~~~l--~l~le-~--------s~~----F~fsG~k-------~~~l-~llP~s~~~~~~~ 1133 (1193)
.+.+||.+.+.+.|.|......+. .+.+- + ... .-+++.+ +..+ .|.|++..+..+.
T Consensus 185 ~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~~~s~~~~l~ 264 (554)
T PF07919_consen 185 PALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAPGSSITVTLY 264 (554)
T ss_pred CeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCcccccCCCCCcEEEEEE
Confidence 889999999999999999877553 33333 0 111 1123322 3344 5688999999999
Q ss_pred EEECcccceecC
Q 040980 1134 VVPLGSGLLQLP 1145 (1193)
Q Consensus 1134 l~PL~~G~~~LP 1145 (1193)
+....+|...|.
T Consensus 265 i~~~~~~~~~L~ 276 (554)
T PF07919_consen 265 IRTSRPGEYELS 276 (554)
T ss_pred EEeCCceeEEEE
Confidence 997777777665
No 22
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=88.70 E-value=41 Score=37.78 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=104.8
Q ss_pred ccCCCCCcceEEEeeeeccccceeEEEEEEEecCCCc-eeeecccCCCCCCCCCcccCCCCeeeEEEEEeeCCCCCcccc
Q 040980 948 ASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDS-ERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGL 1026 (1193)
Q Consensus 948 ~~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~-~~~~~~~~~~~~~l~~~~L~~gd~~~~~f~l~p~~~~~~~~~ 1026 (1193)
.++|++|.+--..++.|.+..++.-..+..+++.... .... .............|.||+..+.+..-.-|+. +...
T Consensus 8 G~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~-L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~-G~h~- 84 (249)
T PF06159_consen 8 GSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLP-LSDNENSDSPVASLAPGESLDFIVSHELKEL-GNHT- 84 (249)
T ss_pred CCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCcccc-CCCCccccccccccCCCCeEeEEEEEEeeec-CceE-
Confidence 4788999988888999988777766555555553221 0211 1111111112357999999999865555422 1112
Q ss_pred eEEEEEEEcC---CCCCCCCCCCCccceEeeeeccCCccccCCCeEEEeec-----CCceeeCCeEEEEEEEEcCCCceE
Q 040980 1027 GTVCLRWRRD---CGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLEC-----PPYAVLGEPFTYTIKIWNQTKLLQ 1098 (1193)
Q Consensus 1027 G~~~I~WrR~---~~~~~~~~~~~~~~~~~s~~~LP~v~~~~~pl~v~~~~-----P~~~~vg~p~~~~~~I~N~T~~~~ 1098 (1193)
=...+.|... .|+.- ....-..-+ + ..||.|.-++ ++....++-+-+...|+|.|..+.
T Consensus 85 L~c~VsY~~~~~~~g~~~---------tfRK~ykF~---v-~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl 151 (249)
T PF06159_consen 85 LVCTVSYTDPTETSGERR---------TFRKFYKFQ---V-LNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPL 151 (249)
T ss_pred EEEEEEEecCcccCCccc---------eEeeeeEEe---C-CCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCce
Confidence 2456667766 33321 111111111 1 2234332221 111245557889999999999885
Q ss_pred EE-EEEEEeCCCeEEeccC---------C--------CcEEeCCCCeEEEEEEEEECcc
Q 040980 1099 EV-KFCVADAQSFVLSGVH---------N--------DTVFVLPKSKHILCYKVVPLGS 1139 (1193)
Q Consensus 1099 ~l-~l~le~s~~F~fsG~k---------~--------~~l~llP~s~~~~~~~l~PL~~ 1139 (1193)
-+ .+.+++++.|-+.... . ....|.|++.+.+-|.+.|-..
T Consensus 152 ~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 152 FLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred EEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 55 6888888887766655 0 1236899999999999999865
No 23
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.54 E-value=3.1 Score=47.37 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.+++++||+..=++ |.| ....+++.+...|+|++|++-|+++... =...+.+++.+|.+||.++|+.++
T Consensus 199 A~~~l~kAlqa~~~--cvR----Asi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 199 ARELLKKALQADKK--CVR----ASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHHHHHHHHhhCcc--cee----hhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHH
Confidence 67788888776544 434 2346788899999999999999999742 233567899999999999999998
Q ss_pred HHHHHHHHc
Q 040980 524 FVEYSLEMA 532 (1193)
Q Consensus 524 ~v~~~leLl 532 (1193)
+....-+.+
T Consensus 268 ~~~fL~~~~ 276 (389)
T COG2956 268 GLNFLRRAM 276 (389)
T ss_pred HHHHHHHHH
Confidence 877666655
No 24
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.07 E-value=1.5 Score=37.68 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
+.+|..|+..|+|++|+..|+.+...+-. ...++..+-.|+...|+.++-+..--+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999876633 35677778899999999998886665555
No 25
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=86.53 E-value=4 Score=38.17 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=52.3
Q ss_pred CeEE-EeecCCceeeCCeEEEEEEEEcCCCc-eEEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEECccccee
Q 040980 1067 PLVV-SLECPPYAVLGEPFTYTIKIWNQTKL-LQEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQ 1143 (1193)
Q Consensus 1067 pl~v-~~~~P~~~~vg~p~~~~~~I~N~T~~-~~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~ 1143 (1193)
.|.| ....|..+..|+++.+.+.|+|.-.. ...+.+.+-..+..+ ....+ .|.|++...+.+.+.+-..|...
T Consensus 3 DL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~----~~~~i~~L~~g~~~~v~~~~~~~~~G~~~ 78 (101)
T PF07705_consen 3 DLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV----STVTIPSLAPGESETVTFTWTPPSPGSYT 78 (101)
T ss_dssp -EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE----EEEEESEB-TTEEEEEEEEEE-SS-CEEE
T ss_pred CEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee----ccEEECCcCCCcEEEEEEEEEeCCCCeEE
Confidence 3555 45678899999999999999999554 466777766555555 44566 88999999999999999888766
No 26
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.33 E-value=5.9 Score=37.26 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhcCcch---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 040980 443 EILGLLKKSCESYGNHKARR---MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSR 516 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R---~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~ 516 (1193)
..++.|.+..+..+.....+ ...+-...+|..+...|++++|+..++.+...-|+.+...-+..++..+..+.+
T Consensus 16 ~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 16 EALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 46777788887777766544 566667889999999999999999999999999999999888888887776654
No 27
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.18 E-value=1.6 Score=33.19 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
..||..|...|+|++|+.+|++++..
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57999999999999999999997643
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.94 E-value=2.8 Score=36.39 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG-IVRDFVEYSLEMA 532 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~-~~~~~v~~~leLl 532 (1193)
.....+|..++..|+|++|+.+|++++..-... ..++..+..|+..+| +.+..+...-+.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 456789999999999999999999998654332 346777888999998 5666655554443
No 29
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=85.61 E-value=1.9 Score=40.48 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEE
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCV 1104 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~l 1104 (1193)
..|+.+..++|.+.+.|+.+.+.+.|.|+++..++++++|
T Consensus 53 ~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V~l 92 (92)
T PF00207_consen 53 FKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTVTL 92 (92)
T ss_dssp B-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEEEE
T ss_pred EeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEEEC
Confidence 3478999999999999999999999999999999998876
No 30
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.50 E-value=0.93 Score=39.26 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-cCcHHHHHH
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ-EGWVTLLWE 506 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~-egW~~L~~~ 506 (1193)
..++++.+++..+-.. ..+...+|..|+..|++++|...|+++...... ..|+.+...
T Consensus 9 ~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 9 EAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4566666666665542 334557999999999999999999999877765 445555543
No 31
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.49 E-value=4.5 Score=45.76 Aligned_cols=84 Identities=7% Similarity=0.084 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
-+..+.+.+..|-.. ..+....+.+|..|+..|+|+.|+.+|..+...|-...|.. +.+.++..|+..+|+.+.
T Consensus 162 Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~---dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 162 AIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA---DAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---HHHHHHHHHHHHcCCHHH
Confidence 444455555544433 34455668999999999999999999999999887766644 566777889999999998
Q ss_pred HHHHHHHHcc
Q 040980 524 FVEYSLEMAA 533 (1193)
Q Consensus 524 ~v~~~leLls 533 (1193)
...+.-+++.
T Consensus 236 A~~~~~~vi~ 245 (263)
T PRK10803 236 AKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHH
Confidence 8887777764
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.11 E-value=1.3e+02 Score=39.02 Aligned_cols=77 Identities=10% Similarity=-0.095 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.++.+.+|++..... ..+...+|..|+..|++++|+.+|+++...-... ..+...+..++.+.|+.++
T Consensus 822 A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 822 ALEYAEKALKLAPNI------PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA------AAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHH
Confidence 667777777643221 1234467888999999999999999998654332 3556667889999999998
Q ss_pred HHHHHHHHc
Q 040980 524 FVEYSLEMA 532 (1193)
Q Consensus 524 ~v~~~leLl 532 (1193)
...+..+++
T Consensus 890 A~~~~~~~~ 898 (899)
T TIGR02917 890 ARKELDKLL 898 (899)
T ss_pred HHHHHHHHh
Confidence 888776665
No 33
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=84.04 E-value=5.8 Score=36.08 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.|.++.++++.-.. .. .....+.+|.-||..|+|++|+.++++ . .+... ...+...+.+|+.++|+-++
T Consensus 8 Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~-----~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 8 AIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPS-----NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp HHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHC-----HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCC-----CHHHHHHHHHHHHHhCCHHH
Confidence 44555555555543 11 333455699999999999999999987 2 11111 13555567999999999888
Q ss_pred HHHHH
Q 040980 524 FVEYS 528 (1193)
Q Consensus 524 ~v~~~ 528 (1193)
-+.+-
T Consensus 77 Ai~~l 81 (84)
T PF12895_consen 77 AIKAL 81 (84)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 34
>PF13584 BatD: Oxygen tolerance
Probab=83.20 E-value=90 Score=38.51 Aligned_cols=121 Identities=22% Similarity=0.256 Sum_probs=74.3
Q ss_pred eEeeeeccCC-------c-cccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce--EEEEEEEEeCCCe-EEeccCCCc
Q 040980 1051 WVVSKHKLPD-------V-EVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL--QEVKFCVADAQSF-VLSGVHNDT 1119 (1193)
Q Consensus 1051 ~~~s~~~LP~-------v-~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~--~~l~l~le~s~~F-~fsG~k~~~ 1119 (1193)
......+||. . .++...+....+ |....+|+|++++++|+=.-... +--.+.+ .++| +|....+..
T Consensus 250 ~~i~V~plP~~~~p~~f~~aVg~f~l~~~~~-~~~~~~Ge~vt~ti~i~g~Gn~~~~~lP~l~~--~~~~~vy~~~~~~~ 326 (484)
T PF13584_consen 250 LTITVKPLPAEGAPADFSGAVGNFSLSQSWD-PTEVKVGEPVTRTITISGEGNLPSIQLPPLNL--PKGFRVYPPKPQEQ 326 (484)
T ss_pred eEEEeccCCcccCCCCcccceeEEEEEEEcC-cccccCCCeEEEEEEEEEEcchhcccCCCCCC--CcccEEcCCCcccc
Confidence 3444556775 1 235555555555 67899999999999998553322 1111221 1343 344333333
Q ss_pred EEeCC---CCeEEEEEEEEECcccceecCeeEE--EeccccccccCCCCccEEEEecCCC
Q 040980 1120 VFVLP---KSKHILCYKVVPLGSGLLQLPKVTV--ISVRYSAEFQASNTASTVFVFPSKP 1174 (1193)
Q Consensus 1120 l~llP---~s~~~~~~~l~PL~~G~~~LP~l~l--~~~~~~~~~~~~~~~~~VfV~P~~~ 1174 (1193)
..... .++.+++|.++|...|...||.+++ .|+..++.-.-...+.+|-|.+...
T Consensus 327 ~~~~~~g~~g~~~~~~~~ip~~~G~~~lP~i~~~~fdp~~~~y~~~~~~~~~i~V~~~~~ 386 (484)
T PF13584_consen 327 DKPSGGGLTGSRTFKYTLIPKKPGDFTLPAIRFSWFDPQTGKYETATLPPITITVAPSAA 386 (484)
T ss_pred ccccCCcceEEEEEEEEEEeCCCCeEEcCCeEEEEEcCCCCeEEEEEcCCEEEEEecCCC
Confidence 33222 4679999999999999999996665 5665444333335678888888664
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=82.54 E-value=7.7 Score=36.90 Aligned_cols=86 Identities=12% Similarity=0.134 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..++++.++++.+... .......+.+|..|+..|+|+.|+++|+.+...+....+. ..++..+..|+.++|+.+
T Consensus 20 ~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 20 DAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA---PDALLKLGMSLQELGDKE 93 (119)
T ss_pred HHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc---cHHHHHHHHHHHHhCChH
Confidence 4566667776654332 2334566789999999999999999999998776443221 244667788899999988
Q ss_pred HHHHHHHHHccC
Q 040980 523 DFVEYSLEMAAL 534 (1193)
Q Consensus 523 ~~v~~~leLls~ 534 (1193)
+.+.+.-+++..
T Consensus 94 ~A~~~~~~~~~~ 105 (119)
T TIGR02795 94 KAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH
Confidence 888877777653
No 36
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.76 E-value=1.8 Score=31.58 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYR 496 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr 496 (1193)
..+.+|..|+..|++++|+++|+.+...|-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999987763
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=52 Score=39.61 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHcCChhHH
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVT--LLWEVLGYLRECSRKQGIVRDF 524 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~--L~~~~L~~l~~Ca~~l~~~~~~ 524 (1193)
+.-|+..|++. ...-.-.-..+.||..|-.++|+.+|.++|++....+-.||=.. +....++ |.+-.++.++-+.-
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f-LA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF-LAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH-HHHHHHhhcchHHH
Confidence 34455555553 11111334567999999999999999999999888775554333 3334444 77888888888888
Q ss_pred HHHHHHHcc
Q 040980 525 VEYSLEMAA 533 (1193)
Q Consensus 525 v~~~leLls 533 (1193)
-.+|.+.++
T Consensus 527 s~Ya~~~~~ 535 (559)
T KOG1155|consen 527 SYYATLVLK 535 (559)
T ss_pred HHHHHHHhc
Confidence 888888775
No 38
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=80.83 E-value=14 Score=34.44 Aligned_cols=85 Identities=25% Similarity=0.285 Sum_probs=51.3
Q ss_pred CceEE-EcCCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccC
Q 040980 767 PQVDV-DLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELG 845 (1193)
Q Consensus 767 p~v~v-~~~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~ 845 (1193)
|.+.| .......+..|+.+.|.++|.|.+... .+.+.+.+. ++|..
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~-~~~~~v~~~------------------------~~~~~-------- 48 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD-AENVTVRLY------------------------LDGNS-------- 48 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS--BEEEEEEEE------------------------ETTEE--------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC-CCCEEEEEE------------------------ECCce--------
Confidence 33444 233557788999999999999999664 223333211 10000
Q ss_pred CchhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecC
Q 040980 846 PGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSP 894 (1193)
Q Consensus 846 ~~~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~ 894 (1193)
.+...++.|++|++....+.+.....|.+.+.+.+.+.-
T Consensus 49 ----------~~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~n 87 (101)
T PF07705_consen 49 ----------VSTVTIPSLAPGESETVTFTWTPPSPGSYTIRVVIDPDN 87 (101)
T ss_dssp ----------EEEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEESTTT
T ss_pred ----------eccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeCC
Confidence 011345677899999988888888889999999987753
No 39
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.43 E-value=3.5 Score=30.27 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQY 495 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Y 495 (1193)
.....+|..|+..|+|++|+.+|++++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 346789999999999999999999987654
No 40
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.60 E-value=4.1 Score=31.22 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
.....||..|+..|+|++|+.+++++...+++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 35678999999999999999999999877654
No 41
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.48 E-value=4.3 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
.+...+|..|+..|+|++|+.+|++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35678999999999999999999998754
No 42
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=79.37 E-value=14 Score=36.57 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...-|.+..+|++. --.+-.|. ....++|..|-.+|++++|+..|+.....|....|..-+... +..|.+.+|+
T Consensus 17 ~~~Ai~~Y~~Al~~-gL~~~~~~--~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f---~Al~L~~~gr 90 (120)
T PF12688_consen 17 EEEAIPLYRRALAA-GLSGADRR--RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF---LALALYNLGR 90 (120)
T ss_pred HHHHHHHHHHHHHc-CCCchHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH---HHHHHHHCCC
Confidence 45567777777773 11122232 456689999999999999999999999888887787666544 4458999999
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.++-+...++.++
T Consensus 91 ~~eAl~~~l~~la 103 (120)
T PF12688_consen 91 PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999885
No 43
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.24 E-value=1.7e+02 Score=36.30 Aligned_cols=257 Identities=19% Similarity=0.186 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccchhhhHHhH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHH
Q 040980 188 ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFK-VAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLV 266 (1193)
Q Consensus 188 e~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~FK-~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~ 266 (1193)
|-|..=++.-.+.++.+... .-+.|+-.-| +|++.=.......|+..|+.|++.+.++++.+.. +.
T Consensus 216 e~A~~l~k~Al~~l~k~~G~-------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~-----~v- 282 (508)
T KOG1840|consen 216 EKAEPLCKQALRILEKTSGL-------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP-----AV- 282 (508)
T ss_pred HHHHHHHHHHHHHHHHccCc-------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH-----HH-
Confidence 34444455445555533321 2366777676 8888888889999999999999999999988642 11
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 040980 267 EIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVL 346 (1193)
Q Consensus 267 E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~ 346 (1193)
| .+...+-.+|...|+..+|-.-+.+=+..++...|... .=++.++.-+|.+.+....
T Consensus 283 -----a-~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~------~~v~~~l~~~~~~~~~~~~---------- 340 (508)
T KOG1840|consen 283 -----A-ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH------PEVAAQLSELAAILQSMNE---------- 340 (508)
T ss_pred -----H-HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHhcc----------
Confidence 1 23345666788899999999999998888888667542 2344455555555544321
Q ss_pred ccCCCCCCccccCch-hHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChh
Q 040980 347 ATADRPLTESEFHPS-YYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDE 425 (1193)
Q Consensus 347 ~~~~~~l~~~~~~PG-~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~ 425 (1193)
..+. +|||+|-+-.. ..+++ +.+.-+.+.++.+..
T Consensus 341 -----------~Eea~~l~q~al~i~~-------------~~~g~-----~~~~~a~~~~nl~~l--------------- 376 (508)
T KOG1840|consen 341 -----------YEEAKKLLQKALKIYL-------------DAPGE-----DNVNLAKIYANLAEL--------------- 376 (508)
T ss_pred -----------hhHHHHHHHHHHHHHH-------------hhccc-----cchHHHHHHHHHHHH---------------
Confidence 1111 23332211000 00111 110001112211110
Q ss_pred hHhHhHhhhCcccccHHHHHHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--cH
Q 040980 426 DYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHK--ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG--WV 501 (1193)
Q Consensus 426 e~~~~al~~~~~~~hs~~ii~LL~kA~~~f~~~~--~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg--W~ 501 (1193)
....+++ ..-.+++.+|+.-....+ ..-......++||..|+..+.++.|.++|......++.-| -.
T Consensus 377 ------~~~~gk~---~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 377 ------YLKMGKY---KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred ------HHHhcch---hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 0112233 245677788877776642 2344567789999999999999999999999755443222 22
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 502 TLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 502 ~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.+ +.....|..-|..+|+-++++++.-.++.
T Consensus 448 ~~-~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DV-TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ch-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 45677889999999999999998888774
No 44
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=78.68 E-value=6.7 Score=34.12 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.+..+.++++..... ..+...+|..|+..|++++|.++|+.+........ .+...+..|+...|+.+.
T Consensus 19 A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 19 ALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHHHHHHHHhHHH
Confidence 344555555443222 25667899999999999999999999877655543 455667778888888776
Q ss_pred HHHHHHHHc
Q 040980 524 FVEYSLEMA 532 (1193)
Q Consensus 524 ~v~~~leLl 532 (1193)
...+..+.+
T Consensus 87 a~~~~~~~~ 95 (100)
T cd00189 87 ALEAYEKAL 95 (100)
T ss_pred HHHHHHHHH
Confidence 665554444
No 45
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.35 E-value=5 Score=51.49 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=55.1
Q ss_pred eeCCeEEEEEEEEcCCC---ceEEEEEEEEeCCCeEEeccCCCcEEeCCCCe-EEEEEEEEECcccceecCeeEEEeccc
Q 040980 1079 VLGEPFTYTIKIWNQTK---LLQEVKFCVADAQSFVLSGVHNDTVFVLPKSK-HILCYKVVPLGSGLLQLPKVTVISVRY 1154 (1193)
Q Consensus 1079 ~vg~p~~~~~~I~N~T~---~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~-~~~~~~l~PL~~G~~~LP~l~l~~~~~ 1154 (1193)
.||+|..++|+++|+-. .++++.+..+.+ +|--. ++++.++|.+. ..++...+|+..|-+.+++-++.+-..
T Consensus 690 Vvdepvef~v~v~Np~~fdl~V~Di~L~~egv-nF~~~---~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~ 765 (1235)
T KOG1953|consen 690 VVDEPVEFSVYVRNPLSFDLEVQDIHLETEGV-NFKCS---HVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGC 765 (1235)
T ss_pred EeCCceEEEEEEcCccceeEEEeeEEEEeccc-cceee---eeeeecCcccccceEEEeccccccCceeeeeEEEEEeee
Confidence 36788899999999865 336666666653 22222 27899999999 999999999999999999888876543
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=75.67 E-value=6 Score=34.08 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=42.4
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 476 FALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 476 ~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
+..|+|+.|+.+|+++...+... ..+...+.+|+.+.|+.++-..+.-+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999998877664 46666799999999999998887766664
No 47
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=74.24 E-value=17 Score=37.65 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=67.0
Q ss_pred hHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q 040980 220 RYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQH 299 (1193)
Q Consensus 220 R~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~H 299 (1193)
.-.+.+|...+-+++.+.|++.|+.|.+.- . ...+.......+...+.+.+...|+..+|+..+.+.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERN-------P------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 345889999999999999999999999641 1 134445555677777778888899999999999999
Q ss_pred HHHhhcccCC-CcchhhhHHHHH
Q 040980 300 NASYKKLVGA-PEVVFLHWEWLS 321 (1193)
Q Consensus 300 i~~~~~~~G~-~e~~f~h~~W~s 321 (1193)
+..|++..|. |+...+.-.|++
T Consensus 140 ~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 140 AEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHhCcccHHHHHHHHH
Confidence 9999998863 332334444554
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.24 E-value=92 Score=37.11 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEV 507 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~ 507 (1193)
..+|+.+..-|.+..++++|++.+..|....-...+.++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDI 480 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHH
Confidence 578999999999999999999999999887444444443
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=73.30 E-value=6.7 Score=44.36 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~ 528 (1193)
+...+|..|+.+|++++|+.+|+++......+ ..++..+..++...|..+.-..+-
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d------~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDD------PLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT------------
T ss_pred HHHHHHHHhccccccccccccccccccccccc------cccccccccccccccccccccccc
Confidence 34567999999999999999999988765554 345556778888888877554443
No 50
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=73.12 E-value=1.6e+02 Score=34.89 Aligned_cols=81 Identities=11% Similarity=-0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++..-.. ..+...+|..|+.+|+|+.|+.+|++++...... .....++..|+..+|+.
T Consensus 19 ~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCCH
Confidence 34677778887754432 2345788999999999999999999997764432 23445567788899998
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+...-+.+.+
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8877777666643
No 51
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=72.69 E-value=6.4 Score=35.59 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred eeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEEC
Q 040980 1079 VLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1079 ~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL 1137 (1193)
.-|+++++++.|.|..... .++.++++.-++|- ......++ .|.||++..+.+.+.|=
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-TTSEEEEEEEEEE-
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCCCCCEEEEEEEEECC
Confidence 3589999999999997654 67888888788888 22222233 89999999999999884
No 52
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.83 E-value=8.3 Score=28.34 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
+...+|..|...|++++|+.+|+++...
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998654
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=71.68 E-value=9.1 Score=33.23 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
+...+|..|+..|++++|+.+|+.+...+.... .+...+..|+...++.++-+.+.-+.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999987665542 4455677788888888777776665554
No 54
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=71.59 E-value=1.6e+02 Score=37.51 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=29.0
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 477 ALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 477 ~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..|++++|..+|++++...... + ..+..+.+++.+.|+.++-+.+.-+.+
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~-~-----~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPEC-D-----IAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCc-H-----HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3577777777777765443222 1 134456677777777766555444443
No 55
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=71.55 E-value=22 Score=35.94 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHhh-cCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 040980 451 SCESYGN-HKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528 (1193)
Q Consensus 451 A~~~f~~-~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~ 528 (1193)
+++.|.. ++....+....+.+|..++..|++++|...|+.+......+ .+......+|.+|....|+.++-+...
T Consensus 33 ~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~---~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 33 AAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP---ELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444443 34445677778889999999999999999999998766444 333445667889999999988766653
No 56
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.76 E-value=16 Score=40.95 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 459 KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 459 ~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
...-++.--.+=|++.+|..|+|+.|...|..+.+.|-+..|-. +.|.+|..|...+|+.+.-..+--++..
T Consensus 172 P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp---dallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 172 PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP---DALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33445556677899999999999999999999999999888764 7788999999999999988777777764
No 57
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=70.29 E-value=21 Score=49.20 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=52.5
Q ss_pred CceeeCCeEEEEEEEEcCCCceEEE-EEEEEeCCCeEEeccCCCcEEe-CCCCeEEEEEEEEECcccceecCeeEEEecc
Q 040980 1076 PYAVLGEPFTYTIKIWNQTKLLQEV-KFCVADAQSFVLSGVHNDTVFV-LPKSKHILCYKVVPLGSGLLQLPKVTVISVR 1153 (1193)
Q Consensus 1076 ~~~~vg~p~~~~~~I~N~T~~~~~l-~l~le~s~~F~fsG~k~~~l~l-lP~s~~~~~~~l~PL~~G~~~LP~l~l~~~~ 1153 (1193)
....+|++..+.+.++|+-..-.++ .++|.. ++=-|... ..++.| .|.+.+.+.+...|+..|.+++-++.+....
T Consensus 645 ~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~-egv~fes~-~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g 722 (1185)
T PF08626_consen 645 PLWVVGEPAEVKVTLQNPFKFELEISSISLST-EGVPFESY-PVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFG 722 (1185)
T ss_pred ccEEcCCeEEEEEEEECCccceEEEEEEEEEE-cCCccccc-eeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEcc
Confidence 3467899999999999995533222 222222 11112222 234555 8899999999999999999999999886544
Q ss_pred c
Q 040980 1154 Y 1154 (1193)
Q Consensus 1154 ~ 1154 (1193)
.
T Consensus 723 ~ 723 (1185)
T PF08626_consen 723 C 723 (1185)
T ss_pred c
Confidence 3
No 58
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=66.97 E-value=23 Score=34.75 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=35.8
Q ss_pred EEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1085 TYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1085 ~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
.++++|.|.|...+++.++++..+++-+.+ ....+.|.|++...+.+.+.-
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~-~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG-PENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E-S--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC-CCcceEECCCCEEEEEEEEEE
Confidence 456699999999999999999877888866 557889999999988887654
No 59
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=66.23 E-value=3.8e+02 Score=34.76 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..+|..|...|++++|...++.+......+ ..+...+..++..+|+.++-+.+--+++
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPND------AVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345555556666666666555554433222 1233334445555555554444433333
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=65.89 E-value=41 Score=36.68 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..+|..|+..|+|++|+..|+.+...|....| ....+..+.+++.++|+.++.+.+.-+|.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPA---TEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999988866533 24566678889999999999988654444
No 61
>PF13584 BatD: Oxygen tolerance
Probab=65.49 E-value=60 Score=40.03 Aligned_cols=136 Identities=14% Similarity=0.209 Sum_probs=78.2
Q ss_pred eeeEEEEEeeCCCCCcccceEEEEEEEcCCCCCCCCCCCCccceEeeeeccCCc-----cccCCCeEEEeecC-CceeeC
Q 040980 1008 EFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDV-----EVELSPLVVSLECP-PYAVLG 1081 (1193)
Q Consensus 1008 ~~~~~f~l~p~~~~~~~~~G~~~I~WrR~~~~~~~~~~~~~~~~~~s~~~LP~v-----~~~~~pl~v~~~~P-~~~~vg 1081 (1193)
...+.|.|.|+ +.+...++.+.|...-.. -+.+ +.......-... ...+.++-+.+++. ..+.+|
T Consensus 72 ~~~~~~~l~p~-~~G~~~IP~~~v~v~Gk~-~~S~-------pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v~~~~~Yvg 142 (484)
T PF13584_consen 72 STTYTYTLQPK-KTGTFTIPPFTVEVDGKT-YKSQ-------PITIEVSKASQSPSQPPSNADDDVFLEAEVSKKSVYVG 142 (484)
T ss_pred EEEEEEEEEec-ccceEEEceEEEEECCEE-Eeec-------CEEEEEEecccCCccccccccccEEEEEEeCCCceecC
Confidence 44566888887 556777788877653210 0100 111111111111 13455666665654 689999
Q ss_pred CeEEEEEEEEcCCCce-EE-EEEEEEeCCCeEEeccCCC-cEE--eCC---CCeEE-EEEEEEECcccceecCeeEEEec
Q 040980 1082 EPFTYTIKIWNQTKLL-QE-VKFCVADAQSFVLSGVHND-TVF--VLP---KSKHI-LCYKVVPLGSGLLQLPKVTVISV 1152 (1193)
Q Consensus 1082 ~p~~~~~~I~N~T~~~-~~-l~l~le~s~~F~fsG~k~~-~l~--llP---~s~~~-~~~~l~PL~~G~~~LP~l~l~~~ 1152 (1193)
|++.+++++.=..... .+ -.+..-..++|.+--..+. ... ..- ....+ .+|.|+|+.+|.+.||.+++...
T Consensus 143 e~v~lt~~ly~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~ 222 (484)
T PF13584_consen 143 EPVILTLRLYTRNNFRQLGIEELPPPDFEGFWVEQLGDDRQYEEERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVT 222 (484)
T ss_pred CcEEEEEEEEEecCchhccccccCCCCCCCcEEEECCCCCceeEEEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEE
Confidence 9999999999776654 22 2233333466665444321 221 122 23355 45999999999999997766543
No 62
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.42 E-value=11 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQE 498 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e 498 (1193)
....+|+.|...|++++|.+.|+++....-.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34678999999999999999999998765443
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=65.37 E-value=19 Score=30.67 Aligned_cols=46 Identities=4% Similarity=0.130 Sum_probs=31.9
Q ss_pred HHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 449 KKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 449 ~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
.+|.+.|... ...--.......+|..++..|+|++|+.+|+.+...
T Consensus 14 ~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 14 DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444442 222335667788999999999999999999998754
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=64.37 E-value=5.5e+02 Score=35.60 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 470 QMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.+|..++..|++++|+.+|++++...... ..++..+..|+.+.|+.++-+.+.-+.+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888999999999999887765443 35566677888888888777776666554
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=61.33 E-value=47 Score=33.58 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
.-++.|.++++.. .-..+.....+.+|..++..|+|++|++.|+.+. .+.|...... ..-+++...|+.+
T Consensus 66 ~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~----~~~~~~~~~~---~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 66 EAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQIP----DEAFKALAAE---LLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc----CcchHHHHHH---HHHHHHHHCCCHH
Confidence 3455556655533 3346677778899999999999999999998743 3446555433 4566788888877
Q ss_pred HHHH
Q 040980 523 DFVE 526 (1193)
Q Consensus 523 ~~v~ 526 (1193)
.-+.
T Consensus 136 ~A~~ 139 (145)
T PF09976_consen 136 EARA 139 (145)
T ss_pred HHHH
Confidence 5543
No 66
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.36 E-value=86 Score=33.22 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
....++-|+.-+..++...-.-.++....++|+.|+..||+++|++.|.++ ..|-. +..... ++...+.+.+...+|
T Consensus 12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~-~~~~~i-d~~l~~irv~i~~~d 88 (177)
T PF10602_consen 12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRA-RDYCT-SPGHKI-DMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcC-CHHHHH-HHHHHHHHHHHHhCC
Confidence 345688888899999987666667777889999999999999999999984 33422 233333 555556666667777
Q ss_pred hhHHHHHHHH
Q 040980 521 VRDFVEYSLE 530 (1193)
Q Consensus 521 ~~~~v~~~le 530 (1193)
......+.-+
T Consensus 89 ~~~v~~~i~k 98 (177)
T PF10602_consen 89 WSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHH
Confidence 6655544433
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.45 E-value=72 Score=28.71 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=22.6
Q ss_pred ecCCCCCCCeEEEEEEEEEeC---CcceEEEEEEEec
Q 040980 860 SIPFLKSGESWSCKLEIKWHR---PKPVMLFVSLGYS 893 (1193)
Q Consensus 860 ~v~~l~~ges~~~~l~i~~~~---~g~~~l~vsv~Y~ 893 (1193)
.++.|.+|++....+.+.... .|.+.|.+.+.|+
T Consensus 42 ~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 42 SVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp EE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred ccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 334777999999888887754 4778899988884
No 68
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.76 E-value=14 Score=29.93 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
+++|+.|+..||++.|...++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999874
No 69
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.53 E-value=25 Score=30.55 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 471 MAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 471 lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
|+..|+..++|++|+.+++++......+ .........|+..+|+.+.-+...-..+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999998764443 34455578899999998887777666664
No 70
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=58.31 E-value=51 Score=42.12 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=49.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHh-----ccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Q 040980 225 VAVYAEFRRDWVEALRFYEDAYHMLREMI-----GTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQ 298 (1193)
Q Consensus 225 ~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~-----~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~ 298 (1193)
-|-|-|=.+||+.|+.+|+.|-+....+. +.+.. ..+..+|-...|. .|++-|.|=..|+...||..|.+
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k--Aa~iA~esgd~AA--cYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK--AARIAEESGDKAA--CYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH--HHHHHHhcccHHH--HHHHHHHhhhhHHHHHHHHHHHH
Confidence 36667778999999999999988765432 22211 0112344444543 48999999999999999999976
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=58.28 E-value=62 Score=30.51 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=48.0
Q ss_pred eeeCCeEEEEEEEEcCCCceEEEEEEEEe--CCCeEEeccCCCcEEeCCCCeEEEEEEEEE-Ccccce
Q 040980 1078 AVLGEPFTYTIKIWNQTKLLQEVKFCVAD--AQSFVLSGVHNDTVFVLPKSKHILCYKVVP-LGSGLL 1142 (1193)
Q Consensus 1078 ~~vg~p~~~~~~I~N~T~~~~~l~l~le~--s~~F~fsG~k~~~l~llP~s~~~~~~~l~P-L~~G~~ 1142 (1193)
..+|+.....+.|.|.+.....+.+.... .+.|.+.- . .-.|.||.+.++...+.| ...|..
T Consensus 16 v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~-~--~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEP-P--SGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred EccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEEC-C--CCEECCCCEEEEEEEEEeCCCCceE
Confidence 56899999999999999999999887755 23454443 3 235899999999999995 455654
No 72
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=56.74 E-value=26 Score=39.76 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=56.7
Q ss_pred cCCCeEEEeecC-CceeeCCeEEEEEEEEcCCCce-EEEEEEEEe-CCCeEEeccC----------CCcEEeCCCCeEEE
Q 040980 1064 ELSPLVVSLECP-PYAVLGEPFTYTIKIWNQTKLL-QEVKFCVAD-AQSFVLSGVH----------NDTVFVLPKSKHIL 1130 (1193)
Q Consensus 1064 ~~~pl~v~~~~P-~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~-s~~F~fsG~k----------~~~l~llP~s~~~~ 1130 (1193)
.+-+|.+++.+- ..-.=|+|+.+.++|.|+|... ..+.+.+.. +|-.+|+-.. +--.+|.|+++..=
T Consensus 191 S~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pgstl~K 270 (402)
T KOG3865|consen 191 SDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPGSTLSK 270 (402)
T ss_pred CCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccccceeeeeecccCCccCCCCeeee
Confidence 345555544332 3456799999999999999976 778888888 6777775543 22237899999999
Q ss_pred EEEEEECcc
Q 040980 1131 CYKVVPLGS 1139 (1193)
Q Consensus 1131 ~~~l~PL~~ 1139 (1193)
.|.|.||-+
T Consensus 271 vf~l~Plla 279 (402)
T KOG3865|consen 271 VFTLTPLLA 279 (402)
T ss_pred eEEechhhh
Confidence 999999865
No 73
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.11 E-value=37 Score=37.19 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhc-------CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 040980 443 EILGLLKKSCESYGNH-------KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG 499 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~-------~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg 499 (1193)
.-...|.+|++.|... ...--...+++.+|+.+.+.|++++|+++|.++....+...
T Consensus 136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3456777777777763 12222346889999999999999999999999988776664
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=55.94 E-value=23 Score=25.73 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.4
Q ss_pred hHHhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 040980 220 RYCFKVAVYAEFRRDWVEALRFYEDAYHM 248 (1193)
Q Consensus 220 R~~FK~a~~aEfr~d~~~Alk~Ye~AY~~ 248 (1193)
...|.+|....-.++.+.|+++|+.|++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999863
No 75
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=55.91 E-value=47 Score=35.87 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 040980 461 RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG 499 (1193)
Q Consensus 461 ~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg 499 (1193)
...+....+.+|.-|+..|+|+.|+..|+.....|-...
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345666666666666666666666666666666665543
No 76
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=54.42 E-value=35 Score=41.27 Aligned_cols=67 Identities=18% Similarity=0.056 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh------HHHHHHHHH
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR------DFVEYSLEM 531 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~------~~v~~~leL 531 (1193)
...+..+|..+|.+|||+.|...|+.+.++|..++=|.-...+..|+.-|....+... +.+...+|-
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 3445589999999999999999999999999988877777889999999999888542 355555553
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.28 E-value=51 Score=31.09 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+..|..++..|+|++|.++|..+...+.... ........+..|+.+.|+.+.-+.+.-+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 457889999999999999999999987654322 2235566788999999999888888877775
No 78
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.81 E-value=27 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
.+.+.+|--|++.|+|++|.++.+.++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567899999999999999999998864
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.73 E-value=25 Score=30.28 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALD-DFNNAKQLFDGVAN 493 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~g-d~~~Al~~l~~~~~ 493 (1193)
.-+..+++|++.- .--..+...||..|+..| +|++|+++|++++.
T Consensus 21 ~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 21 EAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666542 223447889999999999 79999999998764
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=53.31 E-value=28 Score=31.49 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGV 491 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~ 491 (1193)
.+.+.+|+-++.+|+|++|++.|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44556799999999999999999863
No 81
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.19 E-value=33 Score=31.45 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHhccCCC-CCCcccHHHHHHHHH
Q 040980 233 RDWVEALRFYEDAYHMLREMIGTSTR-LPPIQRLVEIKTIAE 273 (1193)
Q Consensus 233 ~d~~~Alk~Ye~AY~~L~e~~~~~~~-~p~~~r~~E~r~lad 273 (1193)
++.+.|+-+|+.|-+.|.+-+..... .-.+.-|..+|.+-+
T Consensus 22 g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~ 63 (79)
T cd02679 22 GDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQ 63 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHH
Confidence 79999999999999999986654432 112455988887643
No 82
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=51.66 E-value=29 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=25.0
Q ss_pred hHHhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 040980 220 RYCFKVAVYAEFRRDWVEALRFYEDAYHM 248 (1193)
Q Consensus 220 R~~FK~a~~aEfr~d~~~Alk~Ye~AY~~ 248 (1193)
+..|.+|-+.+-++|.+.|+++|+.|.+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44678999999999999999999998763
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=50.80 E-value=4.7e+02 Score=30.59 Aligned_cols=82 Identities=22% Similarity=0.166 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
....+..+.++.+..... ......+|..|...|++++|+++|+++..... ......+..+..++...|+
T Consensus 196 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 196 LDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDP-----EYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----hhHHHHHHHHHHHHHHcCC
Confidence 456666777776643221 23456789999999999999999999875321 1223455677888999999
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.++.+...-+++.
T Consensus 265 ~~~A~~~l~~~~~ 277 (389)
T PRK11788 265 EAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887766664
No 84
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=50.79 E-value=5.3e+02 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 040980 462 RMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEV 507 (1193)
Q Consensus 462 R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~ 507 (1193)
|-...=++.=|..|..+|.+..|+.+|..+...|...+|..+...+
T Consensus 367 RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~W~~~~dhl 412 (414)
T PF12739_consen 367 RKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKGWSLIEDHL 412 (414)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCccccc
Confidence 3333334455689999999999999999999999999999876543
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=50.73 E-value=75 Score=33.06 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
.....+|..|+..|+|++|+.+|+++..
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 86
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=50.69 E-value=23 Score=34.92 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++..+++.++.. |+.-+|++|++.+ .++...-.......|+.+|++.... .|+...
T Consensus 14 ~~l~~~i~~l~~~--~~~P~Laii~vg~--d~~S~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~ 70 (117)
T PF00763_consen 14 EELKEEIEKLKEK--GITPKLAIILVGD--DPASISYVRSKQKAAEKLGIEFELI-ELPEDI 70 (117)
T ss_dssp HHHHHHHHHHHHC--T---EEEEEEES----HHHHHHHHHHHHHHHHHT-EEEEE-EE-TTS
T ss_pred HHHHHHHHHHHhc--CCCcEEEEEecCC--ChhHHHHHHHHHHHHHHcCCceEEE-ECCCCc
Confidence 3567788888887 8899999999988 2222345566677888888877643 455443
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=50.52 E-value=5.2e+02 Score=33.33 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+..+.+|++..-... .+...+|..|...|+|+.|+..|+.+...-... ......+..++..+|+.+
T Consensus 302 eA~~~l~~al~l~P~~~------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 302 KAIPLLQQSLATHPDLP------YVRAMYARALRQVGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHCCCHH
Confidence 45666677766432211 233457888888999999999998876542211 011222355777888888
Q ss_pred HHHHHHHHHccC
Q 040980 523 DFVEYSLEMAAL 534 (1193)
Q Consensus 523 ~~v~~~leLls~ 534 (1193)
+-+...-+++..
T Consensus 370 eA~~~l~~al~~ 381 (656)
T PRK15174 370 EAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHh
Confidence 887776666643
No 88
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=50.00 E-value=20 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
....+|..|+..|++++|...|+.+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3467899999999999999999987653
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=49.89 E-value=1.9e+02 Score=30.14 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhhcccccccCCCccchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhcc
Q 040980 180 NRLASIFGELSLAYYRD----EGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGT 255 (1193)
Q Consensus 180 ~~L~~~~~e~a~~yY~~----~~rrik~~~~k~~l~~~~~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~ 255 (1193)
..-...+|.+|..+|.. +++++=+ ++- .-..|+.||-|=+|.....+++++.|+..|..|+..= +.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~-----~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~d 101 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQ-----LLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----ID 101 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CC
Confidence 34567789999999872 2222111 011 0134999999999999999999999999999988632 22
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 040980 256 STRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASY 303 (1193)
Q Consensus 256 ~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~ 303 (1193)
++ ...|..=.|+|..|+...|.+-|+.=|..+
T Consensus 102 dp----------------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 AP----------------QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred Cc----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 22 234555567888999999999999987766
No 90
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.72 E-value=60 Score=35.59 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=53.8
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH--HHHHHHHHHHHhhhhcCCCHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIK--TIAELLHFKISTVLLHGGKLKEAIT 294 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r--~lad~i~~ki~rl~l~~~~~~~Ai~ 294 (1193)
-......|+||+..-.+|-+...++|+.|++...+.+.+... +...+.|++ -|.+-|++| .|+..+|++
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~~~~~l~YLigeL~rr-------lg~~~eA~~ 186 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGMDEATLLYLIGELNRR-------LGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCchHHHHHHHHHHHHHH-------hCCHHHHHH
Confidence 344566899999999999999999999999998877765542 112345554 345555555 599999999
Q ss_pred HHHH
Q 040980 295 WFHQ 298 (1193)
Q Consensus 295 q~~~ 298 (1193)
+|.+
T Consensus 187 ~fs~ 190 (214)
T PF09986_consen 187 WFSR 190 (214)
T ss_pred HHHH
Confidence 9988
No 91
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.25 E-value=4.3e+02 Score=31.93 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 463 MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 463 ~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
+......+||-...+.|++++|-..|..+.+.--+--=. .....+-.+.+.++..+++-..+. |++++
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~-p~lnAm~El~d~a~~~~spsqA~~-~lQ~a 587 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS-PLLNAMAELMDSAKVSNSPSQAIE-VLQLA 587 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC-cchhhHHHHHHHHHhcCCHHHHHH-HHHHH
Confidence 334556789999999999999999999875322111111 222335678888888888765544 66766
No 92
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=48.14 E-value=1.8e+02 Score=27.74 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=47.6
Q ss_pred EEcCCCCCeeeccEEEEEEEEeeCCccc-ccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCchh
Q 040980 771 VDLGASGPALVGESFMIPVTVASRGHDI-YSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEI 849 (1193)
Q Consensus 771 v~~~~~~paL~gE~~~i~i~V~n~~~~~-~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~~i 849 (1193)
+++.....+.+|+-+.+.|+++|..+.. ..-++.+.+.-+.+.|+.. . ..
T Consensus 3 ~~i~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~--~---------~~------------------ 53 (107)
T PF00927_consen 3 IKIKLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTR--D---------QF------------------ 53 (107)
T ss_dssp EEEEEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEE--E---------EE------------------
T ss_pred EEEEECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCccc--c---------cE------------------
Confidence 3444445566999999999999998654 3323444333233333321 0 00
Q ss_pred hhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEE
Q 040980 850 EKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVS 889 (1193)
Q Consensus 850 ~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vs 889 (1193)
++ .....+|.||++.+..+.+.....|.+.+.+.
T Consensus 54 ~~------~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~~ 87 (107)
T PF00927_consen 54 KK------EKFEVTLKPGETKSVEVTITPSQYGPKQLLVD 87 (107)
T ss_dssp EE------EEEEEEE-TTEEEEEEEEE-HHSHEEECCEEE
T ss_pred eE------EEcceeeCCCCEEEEEEEEEceeEecchhcch
Confidence 00 12334567999999888888888887666655
No 93
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=47.36 E-value=1.2e+02 Score=31.85 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+.++.++++..... ......+|..|+..|++++|..+|+++...+.. ....++.+..++...|+.
T Consensus 152 ~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDARAYLERYQQTYNQ------TAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhH
Confidence 44667777777654332 234568899999999999999999998765321 223444667788888887
Q ss_pred hHHHHHH
Q 040980 522 RDFVEYS 528 (1193)
Q Consensus 522 ~~~v~~~ 528 (1193)
+.-..+.
T Consensus 220 ~~a~~~~ 226 (234)
T TIGR02521 220 AAAQRYG 226 (234)
T ss_pred HHHHHHH
Confidence 7765543
No 94
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.23 E-value=1.7e+02 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVL 508 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L 508 (1193)
..++.++.+||...|...|..--+. ...+-|.-.....++++|+++|.+.+..+..++=..+..+++
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAA-maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~ 153 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAA-MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY 153 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4568888888888888888765433 344556666777788888888888777666655544444433
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=47.12 E-value=51 Score=42.59 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHHHHhhcCc--chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 450 KSCESYGNHKA--RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 450 kA~~~f~~~~~--~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
.++.||....- .-=...+..++|+.|...|.|..|+.||.++... ++|.. ..+-+++.+|++.+|.-+..+.
T Consensus 397 e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~---~~~~~--~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 397 EALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR---EGYQN--AFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC---ccccc--hhhhHHHHHHHHHHhhHHHHHH
Confidence 45555555433 3445567889999999999999999999988754 55665 5666778999999987765444
No 96
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=46.75 E-value=96 Score=31.11 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhc----------------CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHH
Q 040980 441 TYEILGLLKKSCESYGNH----------------KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLL 504 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~----------------~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~ 504 (1193)
...-++.+.+|++.|+.. ...++...+...+|..+...|+|+.|+.+++++....-- .
T Consensus 22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~ 95 (146)
T PF03704_consen 22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY------D 95 (146)
T ss_dssp HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------C
Confidence 345677888888877652 112444566778889999999999999999998754422 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHH
Q 040980 505 WEVLGYLRECSRKQGIVRDFVEY 527 (1193)
Q Consensus 505 ~~~L~~l~~Ca~~l~~~~~~v~~ 527 (1193)
..+...+.+|+...|+...-+..
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~ 118 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRV 118 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHH
Confidence 35666688999999998765543
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=46.01 E-value=75 Score=32.22 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
....+|..+...|+|++|+.+|+++... .-++ ...+..+-.|+..+|+.++-+...-+.+..
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~----~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALML--DASH----PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999998753 2222 345556778999999999988888777653
No 98
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=45.56 E-value=1e+02 Score=30.68 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=43.6
Q ss_pred eeCCeEEEEEEEEcCCCceEEEEEEEEe---CCC--eEEeccCCC-----------------cEEeCCCCeEEEEEEEE
Q 040980 1079 VLGEPFTYTIKIWNQTKLLQEVKFCVAD---AQS--FVLSGVHND-----------------TVFVLPKSKHILCYKVV 1135 (1193)
Q Consensus 1079 ~vg~p~~~~~~I~N~T~~~~~l~l~le~---s~~--F~fsG~k~~-----------------~l~llP~s~~~~~~~l~ 1135 (1193)
.-|+.-++.++|.|.+.....+.+.+.+ +++ ..|+..... .+.|.|+++..+.+.+.
T Consensus 24 ~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 24 KPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIK 102 (121)
T ss_pred CCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEE
Confidence 3577889999999999999999999888 344 555554421 17889999999888764
No 99
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=45.13 E-value=85 Score=33.84 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.-.++.|..++..|+|++|+..|+.+...|....|.. ..+.++..|+++.|+-.+-+...=+++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~---~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP---QAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999999998876655 4556778889988887776666555443
No 100
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=44.55 E-value=84 Score=38.06 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=67.3
Q ss_pred eEEEeecC-CceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccceecCe
Q 040980 1068 LVVSLECP-PYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPK 1146 (1193)
Q Consensus 1068 l~v~~~~P-~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~LP~ 1146 (1193)
+.|+-..+ ....+|+..+++++++|+..-.. ......+.+.+...|.....+...|+++ +.|.+.|..-|...+|.
T Consensus 53 ~~v~r~~~~~~~~~g~~~~v~~~v~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~rG~~~~~~ 129 (416)
T COG1721 53 ARVERSLEKRRLFAGEEVEVTLRVRNRGRPRL-LLVDDIPPSFLGVEGTEEVSLRLGPGER--VAYKVTPLRRGEYRLPP 129 (416)
T ss_pred eEeeccccccccccCccceeEEEEEecCccce-EeeeccCCcccccccCcceeeccCCCce--EEEEEecccCCcccccc
Confidence 33443333 33789999999999999212111 1222222445566677777777777777 99999999999999999
Q ss_pred eEEEecccccccc---CCCCccEEEEecC
Q 040980 1147 VTVISVRYSAEFQ---ASNTASTVFVFPS 1172 (1193)
Q Consensus 1147 l~l~~~~~~~~~~---~~~~~~~VfV~P~ 1172 (1193)
+.+.-...-..+. ......++-|.|.
T Consensus 130 v~~~~~~~~gL~~~~~~~~~~~~l~V~P~ 158 (416)
T COG1721 130 VRVRAEDPFGLARARRLVSAERELLVYPD 158 (416)
T ss_pred eEEEccCcccchhhhhhhcccceeEEecc
Confidence 9887663222111 1257789999984
No 101
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=44.28 E-value=46 Score=37.18 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
..++++++....|. ....+......+|..|+..|+|+.|+..|++....|-... -...++-++..|...++
T Consensus 50 ~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~---~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 50 QAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---chHHHHHHHHHhhhhcc
Confidence 45666666665444 3467777789999999999999999999999998887653 12344444555554443
No 102
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=43.91 E-value=1.9e+02 Score=33.68 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=81.1
Q ss_pred CCcceEEEecCCcchhhHHHHHhhhcCCCCC---ccccC-CChhhhhcccCCCCCCC--CCCCCCCCCCCCCcChh----
Q 040980 11 PPVCLISVVGLAEHEHHRLISTHLLSEQPPT---NTLAL-PDLSKLLHLLSKKPKQP--LDATSSSSPAAGILKRD---- 80 (1193)
Q Consensus 11 ~p~~lv~l~g~~~~~~h~~i~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~p--l~~~~s~~~P~GILk~~---- 80 (1193)
.-++-|+|+|+| |+=...+-.+++..+|++ .|+++ |-+-.+. +.+- ++-.. =.|||+--
T Consensus 194 KsiadvGLVG~P-NAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~------yddf~q~tVAD----iPGiI~GAh~nk 262 (366)
T KOG1489|consen 194 KSIADVGLVGFP-NAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVN------YDDFSQITVAD----IPGIIEGAHMNK 262 (366)
T ss_pred eeecccceecCC-CCcHHHHHHHhhccCCcccccceeeeccccceee------ccccceeEecc----CccccccccccC
Confidence 446679999999 477888888888877664 33333 2111000 1110 00000 13555432
Q ss_pred ----hhhhhhccCCeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC-CcHHHHHHHHHH
Q 040980 81 ----WLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHN-DVYEERFIALRK 155 (1193)
Q Consensus 81 ----W~~Kh~~~vPsvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~-~~~~eR~~~lr~ 155 (1193)
=|.||.+ +--.++++.|+.. ..+-+-|+++.--+.+|...=.+-..|.++|++-+- +. +..++++..|.+
T Consensus 263 GlG~~FLrHiE-R~~~l~fVvD~s~-~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi---D~~eae~~~l~~L~~ 337 (366)
T KOG1489|consen 263 GLGYKFLRHIE-RCKGLLFVVDLSG-KQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI---DLPEAEKNLLSSLAK 337 (366)
T ss_pred cccHHHHHHHH-hhceEEEEEECCC-cccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc---CchhHHHHHHHHHHH
Confidence 3668997 4455566777622 011155988776666666666666677777777762 22 344566789998
Q ss_pred HcCCCCccEEEeCCC
Q 040980 156 RAELDSKYILTFNPN 170 (1193)
Q Consensus 156 ~~~ld~k~lf~L~~~ 170 (1193)
+..=. .+|.+...
T Consensus 338 ~lq~~--~V~pvsA~ 350 (366)
T KOG1489|consen 338 RLQNP--HVVPVSAK 350 (366)
T ss_pred HcCCC--cEEEeeec
Confidence 87633 45555543
No 103
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=85 Score=37.90 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=61.8
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HHHHhcCcHHHHH-----------------
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVA----NQYRQEGWVTLLW----------------- 505 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~----~~Yr~egW~~L~~----------------- 505 (1193)
=+||+.-|+++ +..+-....-..|+.||+..++-.+|+..|+++. .+||. |.-|-.
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA--WYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA--WYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH--HhhhhHHHHHhcchHHHHHHHHH
Confidence 35777777775 3344444555689999999999999999999974 56765 665532
Q ss_pred ---------HHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 506 ---------EVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 506 ---------~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
-++..|-+|+.+++..++.+++=.....
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2445567899999999999998777543
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=42.03 E-value=88 Score=30.60 Aligned_cols=62 Identities=11% Similarity=-0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|+.|+.+|+++....... ......+..|+...|+.+.-+..--+.+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678999999999999999999987654221 23345567899999998877665555553
No 105
>PF15146 FANCAA: Fanconi anemia-associated
Probab=41.23 E-value=40 Score=39.79 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=51.9
Q ss_pred eCCeEEEEEEEEcCCCceEE----EEEEEEe-CCCeEEeccC---C--CcE-EeCCCCeEEEEEEEEECcccceecCeeE
Q 040980 1080 LGEPFTYTIKIWNQTKLLQE----VKFCVAD-AQSFVLSGVH---N--DTV-FVLPKSKHILCYKVVPLGSGLLQLPKVT 1148 (1193)
Q Consensus 1080 vg~p~~~~~~I~N~T~~~~~----l~l~le~-s~~F~fsG~k---~--~~l-~llP~s~~~~~~~l~PL~~G~~~LP~l~ 1148 (1193)
..+.++++|.++|.++...| +.+++-+ +-++--.|.. . +.+ .+.||++.++++-|-|-..|.+.||- +
T Consensus 72 ~qD~L~~tCvLeNsS~~sLe~GWtLCiqv~~~s~~~~~~~~~SattytfPv~~L~PG~~~EVtLPLg~~~~g~l~lPv-t 150 (435)
T PF15146_consen 72 LQDSLTATCVLENSSDFSLERGWTLCIQVLSSSCALDTDSASSATTYTFPVDNLGPGERREVTLPLGPAEDGKLDLPV-T 150 (435)
T ss_pred hhcceeeEEEEecCCCccccCCceEEEEeccCCCCcccCCCCCceeEEEEcccCCCCceeEEEEecCccccccccccE-E
Confidence 45678999999999998744 6666655 2223233322 2 334 78999999999999999999999995 4
Q ss_pred EEec
Q 040980 1149 VISV 1152 (1193)
Q Consensus 1149 l~~~ 1152 (1193)
|.+.
T Consensus 151 VsCa 154 (435)
T PF15146_consen 151 VSCA 154 (435)
T ss_pred EEEE
Confidence 5444
No 106
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=41.19 E-value=46 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFD 489 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~ 489 (1193)
....+|..|...||++.|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35678999999999999999876
No 107
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=40.67 E-value=1.5e+02 Score=28.08 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=42.7
Q ss_pred EEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEe--CCCeEEecc-CCC-cEEeCCCCeEEEEE
Q 040980 1070 VSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVAD--AQSFVLSGV-HND-TVFVLPKSKHILCY 1132 (1193)
Q Consensus 1070 v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~--s~~F~fsG~-k~~-~l~llP~s~~~~~~ 1132 (1193)
|.++-|.....+.-......|.|.+...+++.+.+.- .++|-..+. ..+ ++.|.|+++..+.-
T Consensus 12 i~v~~~~~~~~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~ 78 (94)
T PF07233_consen 12 ISVENPSTSRVNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSA 78 (94)
T ss_dssp EEEEEEEEEECCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEE
T ss_pred EEEeccEEEeeCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEE
Confidence 4556667778899999999999999999999999998 788988887 444 45777777766553
No 108
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=40.47 E-value=1.3e+02 Score=29.76 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCcc--EEEeC
Q 040980 108 QWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKY--ILTFN 168 (1193)
Q Consensus 108 ~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~--lf~L~ 168 (1193)
.+.+....++.-+..+..|.+.+.++.=............+-+..||++.++++.. ++++-
T Consensus 24 ~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 24 RYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred HHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 56677777777778899999887777333322344567788899999999999775 44444
No 109
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=40.21 E-value=2e+02 Score=32.37 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cccccccCCCccchhhhHHhHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHhccC
Q 040980 183 ASIFGELSLAYYRDEGRRIKT----RVEKKTLNVNSIDLNIRYCFKVAVYAEFRR--DWVEALRFYEDAYHMLREMIGTS 256 (1193)
Q Consensus 183 ~~~~~e~a~~yY~~~~rrik~----~~~k~~l~~~~~~l~vR~~FK~a~~aEfr~--d~~~Alk~Ye~AY~~L~e~~~~~ 256 (1193)
+++..+++..||++...-.-. |-.+. .+.+ -++=|-+=|-.++=|.+ |...=.++-++|++.+.+++...
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-yP~~---~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRL-YPTH---PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCC---CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 466778888888754321110 00010 0111 23333333555555553 33333455567777777776544
Q ss_pred CCC---CC-cccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHH
Q 040980 257 TRL---PP-IQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFA 328 (1193)
Q Consensus 257 ~~~---p~-~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~fa 328 (1193)
++- |. ..++..++.-----..-|-|.|+..+.+..|+.+|+.=+++|-+-.-.. +-..|+-.-|..||
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~----eaL~~l~eaY~~lg 218 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR----EALARLEEAYYALG 218 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH----HHHHHHHHHHHHhC
Confidence 331 11 3345555555555566799999999999999999999888875543333 34567777776654
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.10 E-value=95 Score=33.78 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
+.+|..|+..|+|+.|+..|+.+...+....|. ......+..|+...|+.+.-+...-+++
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYA---EQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444445555555555555444443332221 1122223344444444444444444433
No 111
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=39.36 E-value=1.6e+02 Score=30.75 Aligned_cols=57 Identities=19% Similarity=0.078 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLE 530 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~le 530 (1193)
...+|..|+..|++++|..+|.++....... ......+..++...|+.+..+.+.-+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555666666666665554433221 12233445555555555544443333
No 112
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=38.51 E-value=86 Score=35.03 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~ 528 (1193)
.+.+|+.|++.|+|..|+.-|+.+...|..-.. ..+.|..+.+.+..+|..+.+-.+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA---TRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHHHH
Confidence 459999999999999999999999999976644 5688889999999999988776543
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.73 E-value=99 Score=30.22 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
.....+|..|+..|++++|..+|+.+....-.. ..+...+..|+..+|+..+-+.+.-+.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999987643221 3445567788888888776666555544
No 114
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=37.43 E-value=1.4e+02 Score=36.57 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 500 WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 500 W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
+......+-.+|..|++++|..++-|+...||+-
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk 287 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK 287 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4556677888899999999999999999999984
No 115
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=37.29 E-value=8e+02 Score=33.39 Aligned_cols=186 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Q 040980 219 IRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQ 298 (1193)
Q Consensus 219 vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~ 298 (1193)
|.|.|+.|.+...++|++.|+..|+.|.+.= +.. .+++ +-+.+.|+..|+..+|+...++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d------------P~n-~~~~-------~~LA~~yl~~g~~~~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV------------PDN-IPLT-------LYLAEAYRHFGHDDRARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------------CCC-HHHH-------HHHHHHHHHCCCHHHHHHHHHH
Q ss_pred HHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHH--------H
Q 040980 299 HNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAH--------Y 370 (1193)
Q Consensus 299 Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~--------~ 370 (1193)
=++.-. ..-....-.+|+ .+|.--++.+++.....+ -++..++..|.- |
T Consensus 104 Av~ldP----~n~~~~~~La~i-~~~~kA~~~ye~l~~~~P------------------~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 104 QLKRHP----GDARLERSLAAI-PVEVKSVTTVEELLAQQK------------------ACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHhcCc----ccHHHHHHHHHh-ccChhHHHHHHHHHHhCC------------------CChhHHHHHHHHhhccchhhh
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHH
Q 040980 371 LKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKK 450 (1193)
Q Consensus 371 ~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~k 450 (1193)
+..-.. .+
T Consensus 161 ~q~eqA------------------------------------------------------------------------l~ 168 (987)
T PRK09782 161 AQLPVA------------------------------------------------------------------------RA 168 (987)
T ss_pred hhHHHH------------------------------------------------------------------------HH
Q ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-cCChhHHHHH
Q 040980 451 SCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRK-QGIVRDFVEY 527 (1193)
Q Consensus 451 A~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~-l~~~~~~v~~ 527 (1193)
|++ .+.....-....+...+++.|...|+|+.|+.+|.++.+...-+ ...+..|.+.+.+ +++ +.-..+
T Consensus 169 AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~------~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 169 QLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS------AAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred HHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhhCH-HHHHHH
No 116
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=37.08 E-value=2.4e+02 Score=28.89 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=51.2
Q ss_pred cCCCeEEEeecCCceeeCC-eEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEEC
Q 040980 1064 ELSPLVVSLECPPYAVLGE-PFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1064 ~~~pl~v~~~~P~~~~vg~-p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL 1137 (1193)
-+.|+.+++- +.+++ =+.+.+-|.|+|... |++.+.+.+..+.-..... ..+.|.|++.+.++.++.=.
T Consensus 54 fsDPvYaEA~----v~v~q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p-~~~tL~P~~~~~i~~~iKVs 124 (140)
T PF07718_consen 54 FSDPVYAEAY----VTVHQYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERP-QPITLAPHGFARIKATIKVS 124 (140)
T ss_pred CCCCeEEEEE----EEEEeeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCC-CceeeCCCcEEEEEEEEEEE
Confidence 3457766644 44443 467888999999876 9999999997776555544 47889999999998876543
No 117
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=36.83 E-value=73 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=23.5
Q ss_pred hHHhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 040980 220 RYCFKVAVYAEFRRDWVEALRFYEDAYHM 248 (1193)
Q Consensus 220 R~~FK~a~~aEfr~d~~~Alk~Ye~AY~~ 248 (1193)
+-.+.+|....-+++++.|+.+|+.|.+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34577899999999999999999999763
No 118
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=36.82 E-value=73 Score=35.65 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG 499 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg 499 (1193)
..+++.+|+-.-+.+|-+..+.++.+.-..-||..+||+.|..||..+...|..+.
T Consensus 58 ~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~ 113 (368)
T COG5091 58 AKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT 113 (368)
T ss_pred HHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 67899999999888888888888888888899999999999999999999999885
No 119
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.08 E-value=1.2e+02 Score=33.64 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.-..+||+.++..|||..|-.||++....+. .-.+.||...+-++.+||....-++...|-.
T Consensus 174 ~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 174 PALLELARLHYKAGDYAPARLYLERYQQRGG------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhccc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456899999999999999999998765543 4468889999999999999988888888775
No 120
>PRK15331 chaperone protein SicA; Provisional
Probab=35.97 E-value=1.7e+02 Score=30.80 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCCCccchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 040980 173 SDLQISLNRLASIFGELSLAYYRDEGRRIK-TRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLRE 251 (1193)
Q Consensus 173 ~~l~~~v~~L~~~~~e~a~~yY~~~~rrik-~~~~k~~l~~~~~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e 251 (1193)
.++.+.-......+|..|-++|..- |+. +++-.+.|-. ...|+.||-+=+|--.+.+++.+.|+-.|..|+..-.
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQG--RLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 4556666667888999999999821 111 0001111111 2459999999999999999999999999998886431
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q 040980 252 MIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNA 301 (1193)
Q Consensus 252 ~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~ 301 (1193)
.++ |- .|+.-.|+|..|+...|..=|..=+.
T Consensus 103 ---~dp------~p----------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 ---NDY------RP----------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---CCC------Cc----------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 222 11 68888999999999999998877544
No 121
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=35.55 E-value=1.3e+02 Score=36.77 Aligned_cols=51 Identities=25% Similarity=0.243 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1085 TYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1085 ~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
.++++|.|.|.+.++++++++..++..+.+... .+.|.|++..++...+..
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~-~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGA-PIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCcEEEcCCc-eEEECCCCEEEEEEEEEe
Confidence 567799999999999999999977777766533 899999999988887655
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=35.45 E-value=3.8e+02 Score=32.07 Aligned_cols=162 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccC
Q 040980 270 TIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATA 349 (1193)
Q Consensus 270 ~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~ 349 (1193)
.++-++-+++++.++........-..-|++.+..+....---..+++--..++ .++..++...
T Consensus 52 ~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~------k~l~~~~~~~----------- 114 (398)
T PRK10747 52 MVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVE------KLMTRNADHA----------- 114 (398)
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhcc-----------
Q ss_pred CCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhH
Q 040980 350 DRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTR 429 (1193)
Q Consensus 350 ~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~ 429 (1193)
-+|+.||..||..+..+.+
T Consensus 115 --------~~p~l~~llaA~aA~~~g~----------------------------------------------------- 133 (398)
T PRK10747 115 --------EQPVVNYLLAAEAAQQRGD----------------------------------------------------- 133 (398)
T ss_pred --------cchHHHHHHHHHHHHHCCC-----------------------------------------------------
Q ss_pred hHhhhCcccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 040980 430 YVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLG 509 (1193)
Q Consensus 430 ~al~~~~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~ 509 (1193)
-..-.+.+.+|.+...... .......|+.+...|+|++|+..++++....-+. ..++.
T Consensus 134 -----------~~~A~~~l~~A~~~~~~~~-----~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~------~~al~ 191 (398)
T PRK10747 134 -----------EARANQHLERAAELADNDQ-----LPVEITRVRIQLARNENHAARHGVDKLLEVAPRH------PEVLR 191 (398)
T ss_pred -----------HHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHH
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 040980 510 YLRECSRKQGIVRDFVEYSLEM 531 (1193)
Q Consensus 510 ~l~~Ca~~l~~~~~~v~~~leL 531 (1193)
.+.+++.+.|+.+..+.+.-++
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
No 123
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.00 E-value=1.8e+02 Score=30.42 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=57.8
Q ss_pred ceeeCCeEEEEEEEEcCCCce-EEEEEEEEe--CCCe-EEeccCCCcE-EeCCCCeEEEEEEEEECcccceecCeeEEEe
Q 040980 1077 YAVLGEPFTYTIKIWNQTKLL-QEVKFCVAD--AQSF-VLSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQLPKVTVIS 1151 (1193)
Q Consensus 1077 ~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~--s~~F-~fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~ 1151 (1193)
++.-+.-+.++|-|.|.-..+ ++++++=.. .+.| +..|....++ +|.+++...=+..+.|...|...--.-.|+-
T Consensus 37 y~v~~rd~~leY~IyNvGsspAldVtLsD~Sfpt~~FeIvkG~~~~swerIpags~vsHsivl~prv~g~f~~t~atVty 116 (188)
T KOG3317|consen 37 YAVEARDVSLEYDIYNVGSSPALDVTLSDNSFPTKTFEIVKGNLSVSWERIPAGSNVSHSIVLRPRVKGVFNGTPATVTY 116 (188)
T ss_pred ccccceeeEEEEeeEEcCCCcceeEEecCCCCCccceeeeccccccceeecCCCCceEEEEEEeecccceeccCceEEEE
Confidence 345566788999999997766 666655321 2334 6889999999 8999999999999999999998776665553
Q ss_pred c
Q 040980 1152 V 1152 (1193)
Q Consensus 1152 ~ 1152 (1193)
.
T Consensus 117 ~ 117 (188)
T KOG3317|consen 117 R 117 (188)
T ss_pred E
Confidence 3
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.99 E-value=1.9e+02 Score=34.64 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
|.||.+-|+.. +.........+.|+-.|-++|+.+.|+.+|.++....+.. .++|..+..-+..+.++...+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------AEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHhhCHHHHHH
Confidence 56777777764 3334555666777777888888888888888776655543 5677777777777777776666
Q ss_pred HHHHHcc
Q 040980 527 YSLEMAA 533 (1193)
Q Consensus 527 ~~leLls 533 (1193)
.-++..+
T Consensus 580 ~~~q~~s 586 (840)
T KOG2003|consen 580 LLMQANS 586 (840)
T ss_pred HHHHhcc
Confidence 5555443
No 125
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.64 E-value=1.8e+02 Score=34.10 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|+..|++++|+.+|+++....... ......+..++.+.|+.++-+...-+++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45578888888899999999988887765432 23444567788888888877776666653
No 126
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.44 E-value=1.8e+02 Score=27.17 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 474 EYFALDDFNNAKQLFDGVANQYRQEGWVT---LLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 474 ey~~~gd~~~Al~~l~~~~~~Yr~egW~~---L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
...+.|||..|+..+.+.......++|.. -....+..+.......|+.++-+...-|.+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45689999999999999987777777766 45556667888999999999888888887754
No 127
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=34.25 E-value=3.2e+02 Score=27.91 Aligned_cols=92 Identities=7% Similarity=0.039 Sum_probs=57.4
Q ss_pred eEEEEEEecCce-----ecCCCeEEEEEEEEcCCC---cee---EecEEEEEEec-CCccEEEEcCCccccccccCCccc
Q 040980 608 VILASVAFHEQI-----IKPGVSTLITVSLLSQLP---LTV---EINQLEIQFNQ-SECNFVIINAQRPLLAATNDGLQV 675 (1193)
Q Consensus 608 ~~~~~~~F~~~~-----~~~g~~~~l~v~L~S~~p---~~I---~~~~l~V~f~~-~~~~~~i~~~~~~~~~~~~~~~~~ 675 (1193)
++.+.+.+..+. +.+|+++.+.|.|+.... ... .-...+..|+- .+.+.|++..-
T Consensus 10 l~~v~~~~~~~~~~~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~~~~WlV~Gr------------- 76 (147)
T PF12584_consen 10 LHTVEFRLQSPPQSPPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVADSDNWLVSGR------------- 76 (147)
T ss_pred EEEEEEEECCCccCCcceEeCCeEEEEEEEEEcccCCccccccccCCCccEEEEEecCCCcEEEecc-------------
Confidence 466666666543 369999999999998531 111 11222233322 33344444431
Q ss_pred ccCCCCceEeecCCeEEEEEEEeeccceEEEEEEEEEEeC
Q 040980 676 HRAESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMG 715 (1193)
Q Consensus 676 ~~~~~~~l~l~p~~~~~~~~~~~~~~~g~~~v~~V~l~lg 715 (1193)
-++.+.+..|....+++.+.+-..|.+-..+|.+.--
T Consensus 77 ---rrg~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~ 113 (147)
T PF12584_consen 77 ---RRGVFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPY 113 (147)
T ss_pred ---CcceEEecCCCeEEEEEEEEecccceecCCEEEEEec
Confidence 1234666788888888888888899888888887744
No 128
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.09 E-value=85 Score=37.32 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH---------hcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYR---------QEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr---------~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.+-+..||+.|+|..|..-|+++....- ...=..+...+...+..|+-++++...-+..|-..|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4667888999999999999998755433 11234466677888999999999999999999998864
No 129
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.08 E-value=2.2e+02 Score=34.10 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYR 496 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr 496 (1193)
|...-.+-|.+-++.||...-.-.++...-++|..|+..|+.+.|+++|.+ +..|-
T Consensus 125 ~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR-~RdYC 180 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSR-ARDYC 180 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhh-hhhhh
Confidence 456678888888999998877777778888999999999999999999999 44553
No 130
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.98 E-value=2.8e+02 Score=30.98 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
....+|+.+|-..|+-.+.-..+-....+.|..|.++|+-..|...|-.+.+-||+. =+.=...+|.+..+-+-.+|+-
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHH
Confidence 356889999999999888777788888888899999988778888888888888876 4445556666666666666665
Q ss_pred hHHHHHHHHHc
Q 040980 522 RDFVEYSLEMA 532 (1193)
Q Consensus 522 ~~~v~~~leLl 532 (1193)
..-.+...++.
T Consensus 110 ~~aAk~~~~ia 120 (288)
T KOG1586|consen 110 TMAAKHHIEIA 120 (288)
T ss_pred HHHHhhhhhHH
Confidence 54444444443
No 131
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.86 E-value=1.9e+02 Score=34.71 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 236 VEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 236 ~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
..|.--|++|.+.+-...... -|-.+...++-.||.+|-=||+.|||..++|..|+.+
T Consensus 193 a~Aa~rF~taLelcskg~a~~--k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 193 AVAAGRFRTALELCSKGAALS--KPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhcc--CCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 356666777777776433221 1223457899999999999999999999999999975
No 132
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=33.86 E-value=47 Score=41.33 Aligned_cols=106 Identities=25% Similarity=0.392 Sum_probs=61.6
Q ss_pred hhhhhhhccCCeEEEEEeeCCCCCCChhhHHH--------HHHHHHHHHHHhc-CCCcEEEEEEEecCC-----------
Q 040980 80 DWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQ--------VCSDLDLLKAAIK-PRNIKLVVIVVNDTL----------- 139 (1193)
Q Consensus 80 ~W~~Kh~~~vPsvvv~f~~~d~~~~d~~~~~~--------l~s~i~~lr~~l~-~r~~kl~VVlv~~~~----------- 139 (1193)
.|-.-| +.+|+=+| ||. |-+ +|- |-.+ +|.++..--+.+. +.++|++|++|+++.
T Consensus 665 ~y~~~n-~~LPsRIi-~YR-DGV-gDG-QLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~ 739 (845)
T KOG1042|consen 665 QYYEVN-RTLPSRII-VYR-DGV-GDG-QLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSN 739 (845)
T ss_pred HHHHhc-ccCCceEE-EEe-cCC-CCc-ccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCcc
Confidence 466666 67999988 665 232 232 2111 1222222222333 588999999999852
Q ss_pred ---CCCCCcHH------HHH------HHHHHHcCCCCccEEEeCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040980 140 ---SDHNDVYE------ERF------IALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYR 195 (1193)
Q Consensus 140 ---~~~~~~~~------eR~------~~lr~~~~ld~k~lf~L~~~~~~~l~~~v~~L~~~~~e~a~~yY~ 195 (1193)
+++..+.| ||. .+.|+.|..+.-+-.+...... .-++++..-+.+|.-||.
T Consensus 740 ~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL-----~PDkmQrLtfKlCHlYyN 805 (845)
T KOG1042|consen 740 AQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGL-----SPDKMQRLTFKLCHLYYN 805 (845)
T ss_pred ccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCC-----CHHHHHHHHHHHhheeec
Confidence 12223334 332 3789999888877666664433 112344444999999996
No 133
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=4.9e+02 Score=30.53 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-cCcHH-HHHHHHHHHHHHHHH
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ-EGWVT-LLWEVLGYLRECSRK 517 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~-egW~~-L~~~~L~~l~~Ca~~ 517 (1193)
.-..+++.|++-.+.++.++-.--..++..++|+.|...||...+.+.++..-..--. .+=.. +-+..-+.-.+-++.
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK 169 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Confidence 4567899999999999999888788899999999999999999999998876442111 11111 112222223344566
Q ss_pred cCChhHHHHHHHHHccC
Q 040980 518 QGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 518 l~~~~~~v~~~leLls~ 534 (1193)
.|+-.+|-+.+|..++.
T Consensus 170 ~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 170 IGDFASYYRHALLYLGC 186 (380)
T ss_pred HHhHHHHHHHHHHHhcc
Confidence 79999999999998874
No 134
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=33.34 E-value=3.7e+02 Score=31.67 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCcceEEEecCCcchhhHHHHHhhhcCCCCC---ccccC-CChhhhhcccCCCCCCCCCCCCCCCCCC--CCcCh-----
Q 040980 11 PPVCLISVVGLAEHEHHRLISTHLLSEQPPT---NTLAL-PDLSKLLHLLSKKPKQPLDATSSSSPAA--GILKR----- 79 (1193)
Q Consensus 11 ~p~~lv~l~g~~~~~~h~~i~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~pl~~~~s~~~P~--GILk~----- 79 (1193)
.=+|-|+|+|+| |+=.+.+-.++++.+|+| .|+++ |..--+.+ . ..+ |..+.| |||.-
T Consensus 157 KllADVGLVG~P-NaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~--~~~-------sfv~ADIPGLIEGAs~G~ 225 (369)
T COG0536 157 KLLADVGLVGLP-NAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-D--GGE-------SFVVADIPGLIEGASEGV 225 (369)
T ss_pred eeecccccccCC-CCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-c--CCC-------cEEEecCcccccccccCC
Confidence 346779999999 477778888888888886 44433 32111111 0 011 122222 55542
Q ss_pred ---hhhhhhhccCCeEEEEEeeCCCCC-CChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHH
Q 040980 80 ---DWLMKHRTRVPSVVAALFSSDQVY-GDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRK 155 (1193)
Q Consensus 80 ---~W~~Kh~~~vPsvvv~f~~~d~~~-~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~ 155 (1193)
.=|.||.+ +-.|++-+.|+.... .||.+ +..+-.++|++.=..--.|-.+|++-+- +...++|++..+++
T Consensus 226 GLG~~FLrHIE-Rt~vL~hviD~s~~~~~dp~~--~~~~i~~EL~~Y~~~L~~K~~ivv~NKi---D~~~~~e~~~~~~~ 299 (369)
T COG0536 226 GLGLRFLRHIE-RTRVLLHVIDLSPIDGRDPIE--DYQTIRNELEKYSPKLAEKPRIVVLNKI---DLPLDEEELEELKK 299 (369)
T ss_pred CccHHHHHHHH-hhheeEEEEecCcccCCCHHH--HHHHHHHHHHHhhHHhccCceEEEEecc---CCCcCHHHHHHHHH
Confidence 45889997 778888888875433 23432 2333333444433333445556666662 22445555555555
Q ss_pred HcC
Q 040980 156 RAE 158 (1193)
Q Consensus 156 ~~~ 158 (1193)
...
T Consensus 300 ~l~ 302 (369)
T COG0536 300 ALA 302 (369)
T ss_pred HHH
Confidence 544
No 135
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=32.74 E-value=95 Score=31.78 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHhh----cCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 449 KKSCESYGN----HKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 449 ~kA~~~f~~----~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
..|+++|.. +.....+.....+||..||..|+|++|+.-+++..+.+-.
T Consensus 27 ~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 27 EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 456666665 3455788888899999999999999999999998765543
No 136
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.29 E-value=1.2e+02 Score=34.77 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.. ++.-+|++|++.+ .++...-.......|+..|+..+ ++-||...
T Consensus 16 ~l~~~v~~l~~~~-g~~P~Laii~vg~--d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~ 72 (286)
T PRK14184 16 ELKTEVAALTARH-GRAPGLAVILVGE--DPASQVYVRNKERACEDAGIVSE-AFRLPADT 72 (286)
T ss_pred HHHHHHHHHHhcc-CCCCEEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 5666777766544 6788999999998 33334445556677777888766 56677654
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=32.05 E-value=2.2e+02 Score=34.23 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..|.++.+|+...... ..+...-|+.+...|+|+.|+...+++....-.+ -..-..|.+|+-++|+.+
T Consensus 218 ~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 218 EAIRLLNEALKENPQD------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHH
Confidence 4688888888544332 5666678999999999999999999986443222 122233678999999987
Q ss_pred HHH
Q 040980 523 DFV 525 (1193)
Q Consensus 523 ~~v 525 (1193)
..+
T Consensus 286 ~AL 288 (395)
T PF09295_consen 286 NAL 288 (395)
T ss_pred HHH
Confidence 665
No 138
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.04 E-value=73 Score=39.90 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcC--cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHhcCcHHHHHHHHHHHHHHH
Q 040980 448 LKKSCESYGNHK--ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGV--ANQYRQEGWVTLLWEVLGYLRECS 515 (1193)
Q Consensus 448 L~kA~~~f~~~~--~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~--~~~Yr~egW~~L~~~~L~~l~~Ca 515 (1193)
...|+..|.+.. +.-.. ++..++|+.||.+++|++|.++|+.+ ..-||-+| ..+...+||.|-+-.
T Consensus 335 ~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~-meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG-MEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHhhH
Confidence 345555555531 22222 78889999999999999999999998 34555553 345555666554433
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=31.66 E-value=2.7e+02 Score=28.87 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLE 530 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~le 530 (1193)
....+|..|...|++++|+.+|++++.......|. ...+..+..|+.++|+.+.-+....+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR---SYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677777777777777777766543332221 23444556666666666555544433
No 140
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.40 E-value=97 Score=35.52 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccE
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYI 164 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~l 164 (1193)
+++.+|+.+++.. |+.-+|++|++.+ .++...-...-...++++|++....
T Consensus 18 ~~~~~i~~~~~~~-~~~p~L~~i~vg~--~~~s~~Y~~~~~~~~~~~Gi~~~~~ 68 (283)
T PRK14192 18 ELSVRVEALKAKT-GRTPILATILVGD--DPASATYVRMKGNACRRVGMDSLKV 68 (283)
T ss_pred HHHHHHHHHHhcc-CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCeEEEE
Confidence 4666777766554 6788999999998 3344455566778888999977754
No 141
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.18 E-value=1.4e+02 Score=34.25 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.. ++.-+|++|++.+ .++...-......-|+..|++.+ ++-||...
T Consensus 17 ~lk~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (288)
T PRK14171 17 DLKLEIQELKSQT-NASPKLAIVLVGD--NPASIIYVKNKIKNAHKIGIDTL-LVNLSTTI 73 (288)
T ss_pred HHHHHHHHHHhcc-CCCCeEEEEEeCC--CccHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 4566677665443 5778999999998 33334445556677777888666 66677654
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=31.06 E-value=1.6e+02 Score=33.49 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHH
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVE-YFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFV 525 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~e-y~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v 525 (1193)
++.|..-|++. +..+....+....|.. |...+|.+.|.+.|+..++.|..+ ..+...++.....+|+.+ -+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~~~d~~-~a 89 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIKLNDIN-NA 89 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HH-HH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhCcHH-HH
Confidence 56667777765 3456777888888985 555889999999999999999776 345555667777788754 45
Q ss_pred HHHHHHc
Q 040980 526 EYSLEMA 532 (1193)
Q Consensus 526 ~~~leLl 532 (1193)
+..+|-+
T Consensus 90 R~lfer~ 96 (280)
T PF05843_consen 90 RALFERA 96 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5556643
No 143
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=30.90 E-value=2.1e+02 Score=35.20 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
-|+++++|++. +....-+...+.+++|--|+..+||++|..+|..+.. ...|..-...-+ ..-|+..+++.
T Consensus 286 Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y~Y~--~a~c~~~l~~~ 356 (468)
T PF10300_consen 286 AIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFYAYL--AAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHHHHH--HHHHHHhhccc
Confidence 44555554421 1223345678899999999999999999999997765 577875333322 45677777766
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=30.87 E-value=3.8e+02 Score=27.54 Aligned_cols=80 Identities=10% Similarity=-0.055 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCCh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGW-VTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW-~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..+..+.+|+...... --.......+|..|.+.|+++.|+.+|+++.......+. +..+..++..+-+-+.++|+.
T Consensus 53 ~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~ 129 (168)
T CHL00033 53 EALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS 129 (168)
T ss_pred HHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH
Confidence 4566666666653221 112346678999999999999999999998755332211 112233333333334466665
Q ss_pred hHHH
Q 040980 522 RDFV 525 (1193)
Q Consensus 522 ~~~v 525 (1193)
+..+
T Consensus 130 ~~A~ 133 (168)
T CHL00033 130 EIAE 133 (168)
T ss_pred HHHH
Confidence 5433
No 145
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=30.49 E-value=1.5e+02 Score=34.84 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHhcCcHHHHHH-HHHHHHHHHHHcCCh
Q 040980 446 GLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVA---NQYRQEGWVTLLWE-VLGYLRECSRKQGIV 521 (1193)
Q Consensus 446 ~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~---~~Yr~egW~~L~~~-~L~~l~~Ca~~l~~~ 521 (1193)
+-+++|+.--...+-.-+-.++..-++..|-.+.||+||+.|..+++ ..|.-.+|..=-.- .|-.+.-.++..|..
T Consensus 143 esfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L 222 (518)
T KOG1941|consen 143 ESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL 222 (518)
T ss_pred HHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc
Confidence 33444443322233333444788899999999999999999999974 56776778764333 333344455555555
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
.|...+|-|.+.
T Consensus 223 gdA~e~C~Ea~k 234 (518)
T KOG1941|consen 223 GDAMECCEEAMK 234 (518)
T ss_pred ccHHHHHHHHHH
Confidence 555555555443
No 146
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.37 E-value=1.4e+02 Score=34.52 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
++..+++.+++.- |+.-+|++|++.+ .++...-......-|+.+|++.. ++-|+...+
T Consensus 17 ~i~~~v~~l~~~~-g~~p~La~i~vg~--~~~s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~ 74 (296)
T PRK14188 17 TVAAEVARLKAAH-GVTPGLAVVLVGE--DPASQVYVRSKGKQTKEAGMASF-EHKLPADTS 74 (296)
T ss_pred HHHHHHHHHHHcc-CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC
Confidence 5566777766433 6788999999998 33334445556677777887655 667776543
No 147
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.28 E-value=1.2e+02 Score=35.07 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++. |+.-+|++|++.+ .++...-......-|+..|++.. ++-|+...
T Consensus 17 ~l~~~v~~l~~~--g~~P~LaiI~vg~--d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~ 72 (297)
T PRK14167 17 DLTDAIETLEDA--GVTPGLATVLMSD--DPASETYVSMKQRDCEEVGIEAI-DVEIDPDA 72 (297)
T ss_pred HHHHHHHHHHhC--CCCceEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566677777653 6778999999988 33334445566677777887666 56677654
No 148
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=30.22 E-value=1.2e+02 Score=26.15 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
..++.+++++...-. ...+....|..|+..|+|+.|...|+.++..
T Consensus 13 ~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 13 EALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345666666665444 3345567899999999999999999998743
No 149
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.02 E-value=1.4e+02 Score=35.27 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.. |+.-+|++|++.+ .++...-......-|++.|++.+ ++-||...
T Consensus 88 ~lk~~v~~lk~~~-g~~P~LaiIlvG~--dpaS~~Yv~~k~K~~e~~GI~~~-~~~lpe~~ 144 (364)
T PLN02616 88 EITIEVSRMKESI-GVVPGLAVILVGD--RKDSATYVRNKKKACDSVGINSF-EVRLPEDS 144 (364)
T ss_pred HHHHHHHHHHHcC-CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 4566677766554 5778999999998 33444455566677778888764 44567554
No 150
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.98 E-value=4.7e+02 Score=27.95 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=58.6
Q ss_pred CCceEEEcC-CCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCcccc
Q 040980 766 DPQVDVDLG-ASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEEL 844 (1193)
Q Consensus 766 ~p~v~v~~~-~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~ 844 (1193)
++.+-++-. .+..+..|+.+.|.++|.|.|+.... +++| .|. + + |.++- ++
T Consensus 20 ~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~-dV~l--~D~-~---f-p~~~F---------~l----------- 71 (181)
T PF05753_consen 20 PARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAY-DVKL--TDD-S---F-PPEDF---------EL----------- 71 (181)
T ss_pred CcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEE-EEEE--ECC-C---C-Ccccc---------Ee-----------
Confidence 344444433 55678889999999999999976433 3444 331 0 2 11211 11
Q ss_pred CCchhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceE-EEEEEEecCCCC
Q 040980 845 GPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVM-LFVSLGYSPLNN 897 (1193)
Q Consensus 845 ~~~~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~-l~vsv~Y~~~~~ 897 (1193)
-.|.. ......|.||+..+..+.++-...|.+. =.+.|+|+...+
T Consensus 72 vsG~~--------s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 72 VSGSL--------SASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred ccCce--------EEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence 11110 0233355699999988888888888854 467889976544
No 151
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=29.72 E-value=1e+02 Score=39.15 Aligned_cols=56 Identities=13% Similarity=-0.066 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
......+|..|+.+|+|++|+..+++++..-... ...+.++..|+..+|+.++-+.
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~------~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY------SKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666667777777777777777665432111 2445556666666666554443
No 152
>PLN03202 protein argonaute; Provisional
Probab=29.69 E-value=1.5e+02 Score=39.69 Aligned_cols=108 Identities=23% Similarity=0.316 Sum_probs=64.8
Q ss_pred hhhhhhhhccCCeEEEEEeeCCCCCCChhhHHH-HHHHHHHHHHHhc----CCCcEEEEEEEecCCC------------C
Q 040980 79 RDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQ-VCSDLDLLKAAIK----PRNIKLVVIVVNDTLS------------D 141 (1193)
Q Consensus 79 ~~W~~Kh~~~vPsvvv~f~~~d~~~~d~~~~~~-l~s~i~~lr~~l~----~r~~kl~VVlv~~~~~------------~ 141 (1193)
..|.+++....|.=++ +|. |-+ +|. |-.+ +..+|..+|+++. +++.||++|+++++-. +
T Consensus 699 ~~~~~~~~~~~P~~Ii-iyR-DGV-seG-Q~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~ 774 (900)
T PLN03202 699 LDFYTSSGKRKPEQII-IFR-DGV-SES-QFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVP 774 (900)
T ss_pred HHHHHHcCCCCCceeE-EEe-cCC-CHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCC
Confidence 3788887779999988 554 333 222 4344 3568888888876 4668999999998521 1
Q ss_pred CCCcHHHHHH------------HHHHHcCCCCccEEEeCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040980 142 HNDVYEERFI------------ALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYR 195 (1193)
Q Consensus 142 ~~~~~~eR~~------------~lr~~~~ld~k~lf~L~~~~~~~l~~~v~~L~~~~~e~a~~yY~ 195 (1193)
+..+.|..+. .-++.+.-+.++.++..... + ..+.|+..-|.+|..||+
T Consensus 775 pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~---~--~~d~lq~lty~lc~~y~~ 835 (900)
T PLN03202 775 PGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIG---F--SADDLQELVHSLSYVYQR 835 (900)
T ss_pred CceEeccccccCCcceEEEecccccccCCcCceEEEEECCCC---C--CHHHHHHHHHHHhhhhcc
Confidence 2223333322 12233333444444444322 1 245677777999999987
No 153
>PHA02503 putative transcription regulator; Provisional
Probab=28.92 E-value=1.2e+02 Score=24.84 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccchhhhHHhHHHH
Q 040980 175 LQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAV 227 (1193)
Q Consensus 175 l~~~v~~L~~~~~e~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~FK~a~ 227 (1193)
.+.-+..+...++..+++||++..+-.-..--+. ++-++-..--+.||.|+
T Consensus 3 ~ek~i~h~g~~v~q~sve~yke~l~~~s~~fl~~--slipql~ewsnaykaav 53 (57)
T PHA02503 3 QEKTINHLGQVVYQESVEFYKEKLSVYSKDFLQN--SLIPQLYEWSNAYKAAV 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Confidence 3456788999999999999997764433222222 22223334455667665
No 154
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.76 E-value=1.2e+02 Score=34.85 Aligned_cols=58 Identities=10% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++..+++.+++.. ++.-+|++|++.+ .++...-......-|+++|+..+ ++-|+...
T Consensus 15 ~~l~~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 72 (293)
T PRK14185 15 QEIAAEVAEIVAKG-GKRPHLAAILVGH--DGGSETYVANKVKACEECGFKSS-LIRYESDV 72 (293)
T ss_pred HHHHHHHHHHHhcc-CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 35667788777665 6788999999988 22333344455567777887665 55667654
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=28.62 E-value=2.4e+02 Score=29.43 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHhhcC-cchHHHHHH--------HHHHHHHHhCCCHHHHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 451 SCESYGNHK-ARRMGSFCG--------FQMAVEYFALDDFNNAKQLFDGVA--NQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 451 A~~~f~~~~-~~R~~~~l~--------~~lA~ey~~~gd~~~Al~~l~~~~--~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
++++|-+.| ..+|..-+. +.+|...+..|+++.|.++|+-++ ..|-.++|..|- -|.+.+|
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG--------~~~Q~~g 83 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLG--------ECCQAQK 83 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH--------HHHHHHh
Confidence 445555543 335554444 678888899999999999998864 344445555443 3555555
Q ss_pred ChhHHHH
Q 040980 520 IVRDFVE 526 (1193)
Q Consensus 520 ~~~~~v~ 526 (1193)
+-++-+.
T Consensus 84 ~~~~AI~ 90 (157)
T PRK15363 84 HWGEAIY 90 (157)
T ss_pred hHHHHHH
Confidence 5544443
No 156
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=28.34 E-value=3.1e+02 Score=26.11 Aligned_cols=61 Identities=10% Similarity=-0.066 Sum_probs=46.4
Q ss_pred EeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEe--CCCeEEecc-CCCcE-EeCCCCeEEEE
Q 040980 1071 SLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVAD--AQSFVLSGV-HNDTV-FVLPKSKHILC 1131 (1193)
Q Consensus 1071 ~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~--s~~F~fsG~-k~~~l-~llP~s~~~~~ 1131 (1193)
.+.-|.....+.-+.....|.|.+...+++.+++.- .++|-..+. ..++- .|.++++..+.
T Consensus 21 ~~~~~~~~~~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~ 85 (101)
T cd09030 21 SVIEPRISRTNGLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQ 85 (101)
T ss_pred EEECcEEEeeCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEE
Confidence 334566666778899999999999999999999998 678888887 55555 55665555544
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.26 E-value=3.1e+02 Score=27.17 Aligned_cols=64 Identities=14% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
+.+++|..|-..|+.++|+.+|+++... .-=.......+..+..++..+|+.++-+.+--+.+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999998541 001123445777888999999999988887766653
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.12 E-value=1.5e+02 Score=34.98 Aligned_cols=61 Identities=21% Similarity=0.125 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
....|...+..|+|+.|+.+|+.++...-.. ...+..+..|+.++|+.++-+..+-+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466899999999999999999987654332 244556778888888888777776666543
No 159
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.12 E-value=4.8e+02 Score=24.02 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=37.2
Q ss_pred EEEEEEEEcCCCceeEecEEEEEE-ecCCccEEEEcCC-ccccccccCCcccccCCCCceEeecCCeEEEEEEEeecc--
Q 040980 626 TLITVSLLSQLPLTVEINQLEIQF-NQSECNFVIINAQ-RPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQ-- 701 (1193)
Q Consensus 626 ~~l~v~L~S~~p~~I~~~~l~V~f-~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~l~l~p~~~~~~~~~~~~~~-- 701 (1193)
+.+.++++..-..++ .++| ++..+++++.+.+ ..... .|.+..= ..--....|.||++..+.+++....
T Consensus 2 v~~~l~v~N~s~~~v-----~l~f~sgq~~D~~v~d~~g~~vwr-wS~~~~F-tQal~~~~l~pGe~~~~~~~~~~~~~~ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPV-----TLQFPSGQRYDFVVKDKEGKEVWR-WSDGKMF-TQALQEETLEPGESLTYEETWDLKDLS 74 (82)
T ss_dssp EEEEEEEEE-SSS-E-----EEEESSS--EEEEEE-TT--EEEE-TTTT--------EEEEE-TT-EEEEEEEESS----
T ss_pred EEEEEEEEeCCCCeE-----EEEeCCCCEEEEEEECCCCCEEEE-ecCCchh-hheeeEEEECCCCEEEEEEEECCCCCC
Confidence 455666666665554 4566 4455677777432 11111 1111000 0000348899999999999997666
Q ss_pred ceEEEEE
Q 040980 702 SGKLECI 708 (1193)
Q Consensus 702 ~g~~~v~ 708 (1193)
+|.|.+.
T Consensus 75 ~G~Y~~~ 81 (82)
T PF12690_consen 75 PGEYTLE 81 (82)
T ss_dssp SEEEEEE
T ss_pred CceEEEe
Confidence 8999874
No 160
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.84 E-value=1.2e+02 Score=34.60 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++. |+..+|++|++.+ .++...-......-|+.+|++.+ ++-||...
T Consensus 16 ~l~~~v~~l~~~--g~~P~Laii~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 71 (282)
T PRK14169 16 DLKQTVAKLAQQ--DVTPTLAVVLVGS--DPASEVYVRNKQRRAEDIGVRSL-MFRLPEAT 71 (282)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566777777755 7888999999998 33333445555667777777655 55667554
No 161
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.76 E-value=1e+02 Score=23.72 Aligned_cols=20 Identities=15% Similarity=0.536 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 040980 470 QMAVEYFALDDFNNAKQLFD 489 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~ 489 (1193)
-+|..++..|+|++|..+|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46889999999999999966
No 162
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=27.68 E-value=78 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH
Q 040980 224 KVAVYAEFRRDWVEALRFYEDAYH 247 (1193)
Q Consensus 224 K~a~~aEfr~d~~~Alk~Ye~AY~ 247 (1193)
.+|-+..=.+|++.|+.+|++|..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477788888999999999999873
No 163
>COG1470 Predicted membrane protein [Function unknown]
Probab=27.53 E-value=1.4e+02 Score=36.09 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=50.5
Q ss_pred eeeCCeEEEEEEEEcCCCceEEEEEEEEe-CCC----eEEeccCCCcEEeCCCCeEEEEEEEEEC
Q 040980 1078 AVLGEPFTYTIKIWNQTKLLQEVKFCVAD-AQS----FVLSGVHNDTVFVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1078 ~~vg~p~~~~~~I~N~T~~~~~l~l~le~-s~~----F~fsG~k~~~l~llP~s~~~~~~~l~PL 1137 (1193)
...++.+.+.++|+|+....++..+++.. .++ |...+.+-.++.|-|+.+..+...++|-
T Consensus 280 i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps 344 (513)
T COG1470 280 ISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPS 344 (513)
T ss_pred EccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecC
Confidence 34567889999999999999999999985 333 7777777778899999999999999994
No 164
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.48 E-value=1.4e+02 Score=35.08 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+|+.. |+.-+|++|++.+ .++...-......-|+..|+..+ ++-|+...
T Consensus 71 ~lk~~v~~l~~~~-g~~P~LaiIlvGd--dpaS~~Yv~~k~K~a~~~GI~~~-~~~l~~~~ 127 (345)
T PLN02897 71 KIASEVRKMKKAV-GKVPGLAVVLVGQ--QRDSQTYVRNKIKACEETGIKSL-LAELPEDC 127 (345)
T ss_pred HHHHHHHHHHhcc-CCCCeEEEEEeCC--ChHHHHHHHHHHHHHHhcCCEEE-EEECCCCC
Confidence 5566777766554 5778999999998 33333444455566667777665 55667554
No 165
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.41 E-value=94 Score=22.13 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.1
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHH
Q 040980 222 CFKVAVYAEFRRDWVEALRFYEDAY 246 (1193)
Q Consensus 222 ~FK~a~~aEfr~d~~~Alk~Ye~AY 246 (1193)
.|++|...+-.+|++.|++.|+..-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4788998888899999999888654
No 166
>PF05326 SVA: Seminal vesicle autoantigen (SVA); InterPro: IPR007990 This family consists of seminal vesicle autoantigen and prolactin-inducible (PIP) proteins. Seminal vesicle autoantigen (SVA) is specifically present in the seminal plasma of mice. This 19 kDa secretory glycoprotein suppresses the motility of spermatozoa by interacting with phospholipid. PIP has several known functions. In saliva, this protein plays a role in host defence by binding to microorganisms such as Streptococcus. PIP is an aspartyl proteinase and it acts as a factor capable of suppressing T-cell apoptosis through its interaction with CD4 [].; GO: 0005576 extracellular region; PDB: 3ES6_B.
Probab=27.27 E-value=2.3e+02 Score=28.28 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcE--EeCCCCeEEEEEEEEECcccce
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTV--FVLPKSKHILCYKVVPLGSGLL 1142 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l--~llP~s~~~~~~~l~PL~~G~~ 1142 (1193)
..+|.+.+++|+.+.-|+-|+++++|+|.=..=+-+++.++.+..-- |..+.+. -|=++..+.+-|.+.--..+.+
T Consensus 31 ~k~l~l~l~~~~~~~~~eev~v~l~V~t~~~eCmvVk~yl~sn~~i~--~~fny~YTaCLC~d~~r~FyWDi~~~~t~~i 108 (124)
T PF05326_consen 31 RKPLSLNLQVPQTAKANEEVTVTLTVTTELRECMVVKIYLESNPPID--GSFNYKYTACLCDDYPRTFYWDIQVNRTVTI 108 (124)
T ss_dssp ----EE-----SEE-SS--EEEEEEEEE--SS-EEEEEEEEESS-----SGGG-EEEEEE-SSS-EEEEEEE--SS-EEE
T ss_pred CccEEEEeecCCCCCCCCEEEEEEEEEcchheeEEEEEEeccCCCcc--ccccceEEEEeCCCCCccEEEEEEECceEEE
Confidence 35678888999999999999999999999888899999999976633 5555444 6777777888887776665554
Q ss_pred e
Q 040980 1143 Q 1143 (1193)
Q Consensus 1143 ~ 1143 (1193)
+
T Consensus 109 ~ 109 (124)
T PF05326_consen 109 A 109 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 167
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=27.18 E-value=1.5e+02 Score=33.92 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=33.7
Q ss_pred CCceEEEcCCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCC
Q 040980 766 DPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFS 817 (1193)
Q Consensus 766 ~p~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~ 817 (1193)
+-++.++++. ---+=||..++.|+|+||.+.... +|++.+..+....|++
T Consensus 194 ~lhLevsLDk-EiYyHGE~isvnV~V~NNsnKtVK-kIK~~V~Q~adi~Lfs 243 (402)
T KOG3865|consen 194 PLHLEVSLDK-EIYYHGEPISVNVHVTNNSNKTVK-KIKISVRQVADICLFS 243 (402)
T ss_pred ceEEEEEecc-hheecCCceeEEEEEecCCcceee-eeEEEeEeeceEEEEe
Confidence 3344555542 334569999999999999976554 6777776555555664
No 168
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.88 E-value=1.2e+02 Score=34.72 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++. |+.-+|++|++.+ .++...-.......|+.+|++.+ ++-|+...
T Consensus 18 ~l~~~v~~l~~~--g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (284)
T PRK14193 18 DLAERVAALKEK--GITPGLGTVLVGD--DPGSQAYVRGKHRDCAEVGITSI-RRDLPADA 73 (284)
T ss_pred HHHHHHHHHHhC--CCCceEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566777777655 7888999999998 33334445566677777887665 45667554
No 169
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.60 E-value=2.2e+02 Score=27.93 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=40.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHH-HHHHHHHcCChh---HHHHHHHHHcc
Q 040980 471 MAVEYFALDDFNNAKQLFDGVANQYRQEG--WVTLLWEVLGY-LRECSRKQGIVR---DFVEYSLEMAA 533 (1193)
Q Consensus 471 lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg--W~~L~~~~L~~-l~~Ca~~l~~~~---~~v~~~leLls 533 (1193)
.|..++..||+-+|+++.+.+....+++. | ++...-.. ..+-|....|++ .|+.-+++-.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~--~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s 68 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW--LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFS 68 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH--HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHH
Confidence 58999999999999999999988877776 5 33332222 334455555554 45555555443
No 170
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=26.47 E-value=1.9e+02 Score=33.40 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEM 531 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leL 531 (1193)
...+|..|+..|++++|..+|++....+... ..+.....+.+..|+...|+.++-+..--++
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666666666666666666655443321 1122233344555666666666555544443
No 171
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=26.36 E-value=1.3e+02 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=23.6
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccC
Q 040980 222 CFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTS 256 (1193)
Q Consensus 222 ~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~ 256 (1193)
.-.+|.+.--+++++.|+++|+.|++....+++.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 34578888888999999999999999988876643
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=26.23 E-value=2e+02 Score=35.06 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=12.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 470 QMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
.+|..|++.|+|++|+..|++++.
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555443
No 173
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=25.48 E-value=1.9e+02 Score=26.69 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=29.8
Q ss_pred EEEEEEEEcCCCceEEE--------EEEEEeCCC---eEEeccC---C--CcEEeCCCCeEEEEEEEE
Q 040980 1084 FTYTIKIWNQTKLLQEV--------KFCVADAQS---FVLSGVH---N--DTVFVLPKSKHILCYKVV 1135 (1193)
Q Consensus 1084 ~~~~~~I~N~T~~~~~l--------~l~le~s~~---F~fsG~k---~--~~l~llP~s~~~~~~~l~ 1135 (1193)
+.+.++|.|+++...+| .+.|-+.++ |-||..+ | ....|.||.+..+...+-
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~ 69 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWD 69 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEES
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEEC
Confidence 67889999999976444 456665332 5555444 2 344889999988876553
No 174
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.41 E-value=1.9e+02 Score=33.26 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
+++.+++.+++.. |+.-+|++|++.+ .++...-.......|+++|+..+ ++-|+...+
T Consensus 17 ~lk~~v~~l~~~~-g~~P~Laii~vg~--d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~ 74 (284)
T PRK14179 17 ELAEKVAKLKEEK-GIVPGLVVILVGD--NPASQVYVRNKERSALAAGFKSE-VVRLPETIS 74 (284)
T ss_pred HHHHHHHHHHhcc-CCCceEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC
Confidence 4455566554432 5678999999998 33334445556677888888776 667776543
No 175
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.37 E-value=1.5e+02 Score=33.93 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++..+++.++.. |+.-+|++|++.+ .++...-......-|++.|++.+ ++-|+...
T Consensus 18 ~lk~~i~~l~~~--g~~p~Laii~vg~--d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~ 73 (285)
T PRK14189 18 EAAQRAAALTAR--GHQPGLAVILVGD--NPASQVYVRNKVKACEDNGFHSL-KDRYPADL 73 (285)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCC--CchHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566777777654 7788999999988 33444555666677777787655 55666543
No 176
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.33 E-value=3.8e+02 Score=35.69 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcCChh
Q 040980 445 LGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWV--TLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 445 i~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~--~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
...+.+|.+.+...+...........+|..++..|+++.|..+++......+..+.. .....+...+...++..|+.+
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Q ss_pred HHHHHHHHHc
Q 040980 523 DFVEYSLEMA 532 (1193)
Q Consensus 523 ~~v~~~leLl 532 (1193)
.-....-+.+
T Consensus 591 ~A~~~~~~al 600 (903)
T PRK04841 591 EAEQCARKGL 600 (903)
T ss_pred HHHHHHHHhH
No 177
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.18 E-value=1.5e+02 Score=27.72 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVAN---QYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~---~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
...+++|..++..|+|+.|+..|-.+.. .|..+ ..-..++++...+|..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~-------~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDD-------AARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC-------HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc-------HHHHHHHHHHHHcCCCC
Confidence 3456899999999999999999998864 34443 44455666666666654
No 178
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.16 E-value=1.4e+02 Score=34.41 Aligned_cols=56 Identities=30% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++..+++.+++. |+.-+|++|++.+ .++...-......-|++.|+..+ ++-||...
T Consensus 19 ~lk~~i~~l~~~--g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 74 (301)
T PRK14194 19 QVREDVRTLKAA--GIEPALAVILVGN--DPASQVYVRNKILRAEEAGIRSL-EHRLPADT 74 (301)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566778887765 7889999999998 33333344555566666787655 45567554
No 179
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.04 E-value=4.3e+02 Score=25.27 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVA-NQYRQEGWVTLLWEVLGYLRECSRKQG-IVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~-~~Yr~egW~~L~~~~L~~l~~Ca~~l~-~~~~~v~~~leLl 532 (1193)
..+-.+|+..||++.|...+..+. +.|+. ++...++.|+..-+ ....++...++-+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--------~vv~~~i~~~le~~~~~~~~~~~Ll~~L 63 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHH--------EVVKVLLTCALEEKRTYREMYSVLLSRL 63 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchH--------HHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 346679999999999999999874 33444 57788888888764 3455555555544
No 180
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=24.69 E-value=4.2e+02 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCceEEEcCCCCCeeeccEEEEEEEEeeCCccc
Q 040980 765 PDPQVDVDLGASGPALVGESFMIPVTVASRGHDI 798 (1193)
Q Consensus 765 ~~p~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~ 798 (1193)
-+++|.|+-....=|-+|--|+|+|.+....|-.
T Consensus 12 dd~nveitq~vP~yatvGspYPiEi~a~gk~Dcv 45 (95)
T PF03504_consen 12 DDCNVEITQRVPKYATVGSPYPIEILAQGKKDCV 45 (95)
T ss_pred CCcceEEeecCcceeecCCCCCEEEEEEccccee
Confidence 3567777777777899999999999999988654
No 181
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.53 E-value=1.7e+02 Score=33.79 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
++..+++.+++.. |+.-+|++|++.+ .++...-......-|++.|+... ++-||...+
T Consensus 18 ~lk~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~t 75 (297)
T PRK14168 18 EIRGEVAELKEKY-GKVPGLVTILVGE--SPASLSYVTLKIKTAHRLGFHEI-QDNQSVDIT 75 (297)
T ss_pred HHHHHHHHHHHcC-CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCCC
Confidence 5667777776544 6788999999988 33334445566677788887654 666776543
No 182
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.48 E-value=1.5e+02 Score=34.06 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++..+++.+++. |+.-+|++|++.+ .++...-......-|++.|++.+ ++-||...
T Consensus 17 ~~l~~~v~~l~~~--g~~P~Laii~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (284)
T PRK14190 17 EQLKEEVVKLKEQ--GIVPGLAVILVGD--DPASHSYVRGKKKAAEKVGIYSE-LYEFPADI 73 (284)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 3566677777655 7788999999987 33333444555666777777655 55667553
No 183
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.06 E-value=1.4e+02 Score=34.11 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++. |+.-+|++|++.+ .++...-......-|++.|++.. ++-||..-
T Consensus 16 ~ik~~v~~l~~~--g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 71 (282)
T PRK14182 16 EVATEVRALAAR--GVQTGLTVVRVGD--DPASAIYVRGKRKDCEEVGITSV-EHHLPATT 71 (282)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566778877755 7888999999988 33333445566677777887665 55667553
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.87 E-value=1.5e+02 Score=33.57 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE 498 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e 498 (1193)
-+..+.+.+..|.. ........+.+|..|...|++++|.++|+.+...|...
T Consensus 199 A~~~f~~vv~~yP~---s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 199 AAYYFASVVKNYPK---SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHCCC---CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445555555543 34456667788999999999999999999999988665
No 185
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.84 E-value=4.5e+02 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=55.2
Q ss_pred eEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcE-EEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCC
Q 040980 91 SVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIK-LVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNP 169 (1193)
Q Consensus 91 svvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~k-l~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~ 169 (1193)
+|.|++||+ .|-..-++...=|+.+| .+|++. +.++||..+....+.---.+.+.-+++-++.. .|+...
T Consensus 96 ~vaviVyDi----t~~~Sfe~t~kWi~dv~---~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a--~f~ets 166 (221)
T KOG0094|consen 96 SVAVIVYDI----TDRNSFENTSKWIEDVR---RERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA--EFIETS 166 (221)
T ss_pred eEEEEEEec----cccchHHHHHHHHHHHH---hccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc--EEEEec
Confidence 677888996 34433333333355444 467875 88999998644332222223344577777766 555554
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHH
Q 040980 170 NTA-SDLQISLNRLASIFGELSL 191 (1193)
Q Consensus 170 ~~~-~~l~~~v~~L~~~~~e~a~ 191 (1193)
.-. -..+.+..|+..++.+...
T Consensus 167 ak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred ccCCCCHHHHHHHHHHhccCccc
Confidence 433 4567788888877777654
No 186
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=23.38 E-value=6e+02 Score=23.56 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.3
Q ss_pred ecCceecCCCeEEEEEEEEcCC--CceeEecEEEEEEecCCccEEE
Q 040980 615 FHEQIIKPGVSTLITVSLLSQL--PLTVEINQLEIQFNQSECNFVI 658 (1193)
Q Consensus 615 F~~~~~~~g~~~~l~v~L~S~~--p~~I~~~~l~V~f~~~~~~~~i 658 (1193)
-..+.|.+||.+.+.+.++..- -.+..-..+.|.+.++..+.+.
T Consensus 6 TDr~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~ 51 (99)
T PF01835_consen 6 TDRPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVF 51 (99)
T ss_dssp ESSSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEE
T ss_pred CCccCcCCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEE
Confidence 3468899999999999987665 2334446677777777655543
No 187
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.25 E-value=1.6e+02 Score=33.78 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++..+++.+++. |+.-+|++|++.+ .+....-.......|+..|++.+ ++-|+...
T Consensus 16 ~l~~~v~~l~~~--g~~P~Laii~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 71 (282)
T PRK14166 16 ELKEKNQFLKSK--GIESCLAVILVGD--NPASQTYVKSKAKACEECGIKSL-VYHLNENT 71 (282)
T ss_pred HHHHHHHHHHhC--CCCceEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 456677777655 7788999999988 33333444555667777787665 45566543
No 188
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.13 E-value=2.9e+02 Score=27.93 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
...++.+-+|....-.++++.|+..|+.|... -+.+. ...+.+..+++..|++.+|+.-|
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l----~p~~~----------------~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALML----DASHP----------------EPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCc----------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45666788999999999999999999999863 12221 23455666788899999999999
Q ss_pred HHHHH
Q 040980 297 HQHNA 301 (1193)
Q Consensus 297 ~~Hi~ 301 (1193)
++=+.
T Consensus 116 ~~Al~ 120 (144)
T PRK15359 116 QTAIK 120 (144)
T ss_pred HHHHH
Confidence 88443
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=22.71 E-value=1.4e+02 Score=35.54 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 040980 225 VAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYK 304 (1193)
Q Consensus 225 ~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~ 304 (1193)
+|=-.=|.++++.|..||+.+|..-+|+-. |-.|+..+ |-+-.-|-...+...||..|.+|...-.
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQsc-----YSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSC-----YSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445778999999999999999888732 45676654 3333333333467899999999987654
Q ss_pred c
Q 040980 305 K 305 (1193)
Q Consensus 305 ~ 305 (1193)
+
T Consensus 307 e 307 (639)
T KOG1130|consen 307 E 307 (639)
T ss_pred H
Confidence 3
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.53 E-value=1.6e+02 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=41.8
Q ss_pred HHHHHHHHhh----cCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 040980 448 LKKSCESYGN----HKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE 498 (1193)
Q Consensus 448 L~kA~~~f~~----~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e 498 (1193)
+++|.+.|.+ +....+....+.++|--||+.++|+.|+...++-...|-..
T Consensus 50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 4566666665 34457889999999999999999999999999998888654
No 191
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.35 E-value=1.6e+02 Score=33.67 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
++++.+++.+|+. |+.-+|++|++.+ .++...-.......|+++|++.+ ++-|+...+
T Consensus 16 ~~ik~~i~~l~~~--g~~P~Laii~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~ 73 (284)
T PRK14170 16 EKVTREVAELVKE--GKKPGLAVVLVGD--NQASRTYVRNKQKRTEEAGMKSV-LIELPENVT 73 (284)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCCC
Confidence 3566778887765 7888999999988 33333444555566777777655 556776543
No 192
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.31 E-value=2e+02 Score=32.25 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGV 491 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~ 491 (1193)
|-...+.|..+|.+-+...++.||+..+...+++.+.+...|.+|...|.+-
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 4566899999999999999999999999999999999999999999888874
No 193
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=1.8e+02 Score=34.03 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
..|+|++.-++--++.++.=+++.+...++..|+..++|..|+.+-..+++..++
T Consensus 106 ~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 106 DQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4688999999988889999899999999999999999999999999988776654
No 194
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.25 E-value=2.2e+02 Score=32.75 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++..+++.+++. .|+.-+|++|++.+ .+....-.......|++.|+..+ ++-||...
T Consensus 23 ~l~~~i~~l~~~-~g~~P~Laii~vg~--d~aS~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~ 79 (287)
T PRK14176 23 EVRSGVERLKSN-RGITPGLATILVGD--DPASKMYVRLKHKACERVGIRAE-DQFLPADT 79 (287)
T ss_pred HHHHHHHHHHhc-cCCCCeEEEEEECC--CcchHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 456667766654 26778999999998 34444555666777888887665 45666543
No 195
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.08 E-value=1.9e+02 Score=33.28 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++..+++.+++.. |+.-+|++|++.+ .+++..-......-|++.|++.+ ++-||...
T Consensus 16 ~l~~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 72 (285)
T PRK14191 16 DLKNKIQILTAQT-GKRPKLAVILVGK--DPASQTYVNMKIKACERVGMDSD-LHTLQENT 72 (285)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 5667777776544 7888999999998 33334445566677777787665 55667554
No 196
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=2.2e+02 Score=31.82 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 234 DWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 234 d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
+...|.--|++|...|..+.-.. -|+.+.|.|+-....-+-.-.|.|+|..|+.-+++..
T Consensus 193 ~ykEA~~~YreAi~~l~~L~lkE--kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 193 RYKEASSKYREAIICLRNLQLKE--KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcc--CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 56678889999999998765433 2567789999888877777889999988876666543
No 197
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=22.06 E-value=4e+02 Score=25.63 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=37.0
Q ss_pred eCCeEEEEEEEEcCCCceEEEEEEEEe-----C---CCeE----------EeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1080 LGEPFTYTIKIWNQTKLLQEVKFCVAD-----A---QSFV----------LSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1080 vg~p~~~~~~I~N~T~~~~~l~l~le~-----s---~~F~----------fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
.+..+.++++|+|.+...+++.++..+ . .+.. -......+|.|.|+++..+.+.+.|
T Consensus 6 ~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 6 TGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp E-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred cCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 477799999999999999888777762 1 1111 2333466789999999999999887
No 198
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=22.02 E-value=2.6e+02 Score=33.99 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCeEEEeecCCceeeCCeEEEEEE-EEcCCCceEEEEEEEEe------------CCCeEEeccCCCcEEeCCCCeEEEEE
Q 040980 1066 SPLVVSLECPPYAVLGEPFTYTIK-IWNQTKLLQEVKFCVAD------------AQSFVLSGVHNDTVFVLPKSKHILCY 1132 (1193)
Q Consensus 1066 ~pl~v~~~~P~~~~vg~p~~~~~~-I~N~T~~~~~l~l~le~------------s~~F~fsG~k~~~l~llP~s~~~~~~ 1132 (1193)
+.+.+..+|.+.- -..=.+. |+|....+..++=.-.+ .+.|+|.- ..+.|+||..+.+.+
T Consensus 235 ~~~~l~Fe~~p~e----~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~---~~gvilPGe~~~~~~ 307 (426)
T PF14646_consen 235 ISIRLTFECHPGE----RVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDT---SSGVILPGETRNFPF 307 (426)
T ss_pred cceEEEEEcccCc----eeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeC---CCCEECCCceEEEEE
Confidence 3445555553332 2222333 77776665444333222 35588874 367899999999999
Q ss_pred EEEECcccceecC
Q 040980 1133 KVVPLGSGLLQLP 1145 (1193)
Q Consensus 1133 ~l~PL~~G~~~LP 1145 (1193)
.+.|..+|..+=-
T Consensus 308 ~F~s~~~Gif~E~ 320 (426)
T PF14646_consen 308 MFKSRKVGIFKER 320 (426)
T ss_pred EEeCCCceEEEEE
Confidence 9999999985544
No 199
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.73 E-value=3.9e+02 Score=23.30 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.2
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCC
Q 040980 222 CFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTST 257 (1193)
Q Consensus 222 ~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~ 257 (1193)
..+.|+=+|=.++.+.|+.+|..|-+.|...+...+
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 467888889899999999999999999988776554
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=21.56 E-value=3.1e+02 Score=32.81 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhc-------CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 444 ILGLLKKSCESYGNH-------KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~-------~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
.+.-...|+++||.. |-.---.+..+-+|..|+.++++++|+.|+.+-++
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777762 43344457778999999999999999999998543
No 201
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.55 E-value=1.8e+03 Score=28.40 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=80.5
Q ss_pred cEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCc-cEEEeCCCCchhHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 040980 128 IKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSK-YILTFNPNTASDLQISLNRLASIFGELSLAY------YRDEGRR 200 (1193)
Q Consensus 128 ~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k-~lf~L~~~~~~~l~~~v~~L~~~~~e~a~~y------Y~~~~rr 200 (1193)
.+.-||++-+ .+.+.++-+++|.+-.+-.+. .+|+|-..+. .+|..++..-|+.+ -.+..++
T Consensus 120 ~~~KViIIDE----ad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~-------~~llpTIrSRc~~~~f~~l~~~ei~~~ 188 (620)
T PRK14948 120 ARWKVYVIDE----CHMLSTAAFNALLKTLEEPPPRVVFVLATTDP-------QRVLPTIISRCQRFDFRRIPLEAMVQH 188 (620)
T ss_pred CCceEEEEEC----ccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh-------hhhhHHHHhheeEEEecCCCHHHHHHH
Confidence 3445677776 245567788899999887666 4777765542 13444444444333 1122222
Q ss_pred HhhcccccccCCCccchhhhHHhHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHH----HHH
Q 040980 201 IKTRVEKKTLNVNSIDLNIRYCFKVAVYAEF-RRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIA----ELL 275 (1193)
Q Consensus 201 ik~~~~k~~l~~~~~~l~vR~~FK~a~~aEf-r~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~la----d~i 275 (1193)
+++...+.....+... +..+++. .+|+..|+..++.. ..+ .+..+ ...++.+. +..
T Consensus 189 L~~ia~kegi~is~~a--------l~~La~~s~G~lr~A~~lLekl-sL~---~~~It-------~e~V~~lvg~~~e~~ 249 (620)
T PRK14948 189 LSEIAEKESIEIEPEA--------LTLVAQRSQGGLRDAESLLDQL-SLL---PGPIT-------PEAVWDLLGAVPEQD 249 (620)
T ss_pred HHHHHHHhCCCCCHHH--------HHHHHHHcCCCHHHHHHHHHHH-Hhc---cCCCC-------HHHHHHHhcCCCHHH
Confidence 3221111111111111 2344444 46888888877752 111 11111 22222221 222
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHH
Q 040980 276 HFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFA 328 (1193)
Q Consensus 276 ~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~fa 328 (1193)
.+.+++.++ .+++..|+...+.-.+ .|.. ...-..|+.+||+-+-
T Consensus 250 i~~Ll~ai~-~~d~~~al~~~~~Ll~-----~g~~--p~~iL~~L~~~~RDLL 294 (620)
T PRK14948 250 LLNLLKALA-SNDPESLLDSCRQLLD-----RGRE--PLAILQGLAAFYRDLL 294 (620)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHH-----cCCC--HHHHHHHHHHHHHHHH
Confidence 345555555 5678888876655221 1322 2234679998887653
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.23 E-value=3.2e+02 Score=28.08 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
-.++-|.+-+..|+|+.|.+.|+.+..-|-...|.. ....++..++++.++-..-+...=+++.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~---qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAE---QAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 346778899999999999999999988876665554 66677889999999999888887777754
No 203
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=21.16 E-value=2.5e+02 Score=25.89 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=43.9
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 475 YFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 475 y~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
.|+.++.++|+..+.+++.-+.+. .-...+|..|...+...|.-.+++.+++.=+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999998766442 2455677888999999999999998887644
No 204
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.12 E-value=1.7e+02 Score=33.56 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++. |+..+|++|++.+ .++...-.......|+..|++.+ ++-|+...
T Consensus 18 ~~~~~v~~l~~~--g~~p~Laii~vg~--~~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (286)
T PRK14175 18 GLQDQVEALKEK--GFTPKLSVILVGN--DGASQSYVRSKKKAAEKIGMISE-IVHLEETA 73 (286)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEeCC--CHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 566777777654 7888999999998 33333444555566777777655 55666543
No 205
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=1.3e+02 Score=36.81 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 470 QMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
..+.-+|..|+|+.|++||..+...--.| .-.-.....|+-.+|+.+..+.-|-+.|.+
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 45677899999999999999987555444 233445778888999988888887776653
No 206
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.49 E-value=2.2e+02 Score=32.96 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.. |+.-+|++|++.+ .++...-......-|++.|++.+ ++-|+...
T Consensus 17 ~lk~~v~~l~~~~-g~~p~LaiI~vgd--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (297)
T PRK14186 17 RLQAQIESNLPKA-GRPPGLAVLRVGD--DPASAVYVRNKEKACARVGIASF-GKHLPADT 73 (297)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEEeCC--ChHHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 4556676665443 6778999999987 33333444555566677777655 45566543
No 207
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.35 E-value=2.3e+02 Score=32.63 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.- |+.-+|++|++.+ .++...-......-|+..|++.+ ++-||...
T Consensus 17 ~lk~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 73 (294)
T PRK14187 17 ILATCIDDLKRQH-NLFPCLIVILVGD--DPASQLYVRNKQRKAEMLGLRSE-TILLPSTI 73 (294)
T ss_pred HHHHHHHHHHHcc-CCCCeEEEEEeCC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 4566677765433 6788999999998 33333444555666777787665 55666553
No 208
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=2.8e+02 Score=38.92 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=56.4
Q ss_pred CCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCC-----------CcE-EeC-CCCeEEEEE
Q 040980 1066 SPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHN-----------DTV-FVL-PKSKHILCY 1132 (1193)
Q Consensus 1066 ~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~-----------~~l-~ll-P~s~~~~~~ 1132 (1193)
-|+-|.+++|-.++.||.|.+...|.|.-+.-+++.+.|+.+++|-++.... ..+ ++. +.+.+.+.+
T Consensus 761 QpfFi~l~lPySV~RgE~i~l~~tv~NYl~k~~~v~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~s~~~~~~ 840 (1436)
T KOG1366|consen 761 QPFFIELNLPYSVRRGEQIALRVTVFNYLTKELDVSVILLSSEDFCYDATSKANEQVGVSQRSVQVSRVTPAQSGKLVYF 840 (1436)
T ss_pred eceeEEecCceeEEeCcEeEEeEEEecccCcceEEEEEEccCCCeeeecccccCcccccccceEEEEEEcccccceEEEE
Confidence 4566788999999999999999999999988899999999988888777331 222 333 344455555
Q ss_pred EEEECccc
Q 040980 1133 KVVPLGSG 1140 (1193)
Q Consensus 1133 ~l~PL~~G 1140 (1193)
.+.|..-|
T Consensus 841 ~v~p~~~g 848 (1436)
T KOG1366|consen 841 PVRPGVIG 848 (1436)
T ss_pred Eecccccc
Confidence 56666555
No 209
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=20.03 E-value=2.6e+02 Score=26.59 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=13.2
Q ss_pred eEeecCCeEEEEEEEeeccceEEEE
Q 040980 683 LILITNRWLRLTYEIKSEQSGKLEC 707 (1193)
Q Consensus 683 l~l~p~~~~~~~~~~~~~~~g~~~v 707 (1193)
..+.||++.+++| .+.++|+|+.
T Consensus 68 ~~l~~g~~~~~~f--~~~~~G~y~~ 90 (104)
T PF13473_consen 68 KVLPPGETATVTF--TPLKPGEYEF 90 (104)
T ss_dssp EEE-TT-EEEEEE--EE-S-EEEEE
T ss_pred EEECCCCEEEEEE--cCCCCEEEEE
Confidence 5678898776666 4678887764
No 210
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=20.03 E-value=2.4e+02 Score=32.59 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 111 QVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 111 ~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
+++.+++.+++.. |+.-+|++|++.+ .++...-......-|+..|++.+ ++-|+...
T Consensus 24 ~l~~~v~~l~~~~-g~~P~LaiI~vg~--d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~ 80 (299)
T PLN02516 24 EIAEEVAQLSEKH-GKVPGLAVVIVGS--RKDSQTYVNMKRKACAEVGIKSF-DVDLPENI 80 (299)
T ss_pred HHHHHHHHHHHcC-CCCCeEEEEEECC--ChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 4555666665433 6778999999998 33334445555666777777554 45566543
Done!