Query 040980
Match_columns 1193
No_of_seqs 233 out of 319
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1s_A PINS, partner of inscut 97.5 0.013 4.3E-07 67.3 24.6 95 440-534 278-372 (411)
2 4a1s_A PINS, partner of inscut 97.4 0.025 8.7E-07 64.7 25.6 58 440-497 318-375 (411)
3 3ro2_A PINS homolog, G-protein 97.3 0.046 1.6E-06 59.6 25.6 250 217-532 41-290 (338)
4 3ro2_A PINS homolog, G-protein 97.3 0.035 1.2E-06 60.5 23.8 92 442-533 240-331 (338)
5 3sf4_A G-protein-signaling mod 97.2 0.049 1.7E-06 61.7 24.8 92 442-533 244-335 (406)
6 3sf4_A G-protein-signaling mod 97.0 0.059 2E-06 61.0 23.1 220 217-522 125-364 (406)
7 3nf1_A KLC 1, kinesin light ch 96.8 0.19 6.6E-06 54.3 24.7 237 216-532 24-305 (311)
8 3hrz_B Cobra venom factor; ser 96.8 0.0062 2.1E-07 66.7 12.1 106 1064-1173 78-187 (252)
9 3edt_B KLC 2, kinesin light ch 96.8 0.56 1.9E-05 49.5 27.2 103 189-309 19-121 (283)
10 3q15_A PSP28, response regulat 96.6 0.11 3.8E-06 59.2 21.5 229 216-532 98-326 (378)
11 2ifu_A Gamma-SNAP; membrane fu 96.4 0.96 3.3E-05 50.0 26.8 89 444-532 134-222 (307)
12 3ulq_A Response regulator aspa 96.2 0.42 1.5E-05 54.3 23.5 230 217-533 101-330 (383)
13 3ulq_A Response regulator aspa 96.1 0.87 3E-05 51.6 24.9 226 217-532 141-366 (383)
14 3nf1_A KLC 1, kinesin light ch 96.0 0.5 1.7E-05 50.9 21.6 106 187-310 43-148 (311)
15 3ro3_A PINS homolog, G-protein 95.7 0.12 4E-06 49.6 13.0 92 442-533 26-117 (164)
16 3edt_B KLC 2, kinesin light ch 95.5 1.2 4E-05 47.0 21.4 180 232-533 14-197 (283)
17 3ro3_A PINS homolog, G-protein 95.3 0.19 6.4E-06 48.1 13.0 91 442-532 66-156 (164)
18 3es6_B Prolactin-inducible pro 94.9 0.044 1.5E-06 52.6 7.0 72 1066-1137 6-77 (118)
19 3gw4_A Uncharacterized protein 94.5 0.32 1.1E-05 49.2 13.0 92 442-533 83-175 (203)
20 2ifu_A Gamma-SNAP; membrane fu 94.3 0.21 7.2E-06 55.4 11.9 89 444-533 95-183 (307)
21 1qqe_A Vesicular transport pro 94.1 0.37 1.3E-05 52.9 13.2 93 442-534 94-187 (292)
22 3gw4_A Uncharacterized protein 94.0 0.48 1.7E-05 47.8 13.1 91 442-532 43-134 (203)
23 2hr0_B Complement C3 alpha' ch 93.9 0.16 5.4E-06 65.8 11.1 105 1065-1173 78-187 (915)
24 2xzz_A Protein-glutamine gamma 93.7 0.11 3.9E-06 48.4 6.8 71 1071-1144 9-81 (102)
25 3cv0_A Peroxisome targeting si 93.6 4.7 0.00016 43.4 21.0 80 442-527 223-308 (327)
26 3prx_B Cobra venom factor; imm 93.4 0.23 8E-06 67.7 11.8 80 1065-1144 811-894 (1642)
27 4fxk_B Complement C4-A alpha c 93.3 0.12 4.1E-06 65.6 8.4 81 1064-1144 150-232 (767)
28 2b39_A C3; thioester, immune d 92.9 0.34 1.2E-05 66.8 12.4 104 1066-1173 826-934 (1661)
29 4acq_A Alpha-2-macroglobulin; 92.8 0.31 1.1E-05 65.9 11.6 80 1065-1144 766-847 (1451)
30 3uq3_A Heat shock protein STI1 92.4 7.8 0.00027 39.9 19.9 71 219-302 38-108 (258)
31 2yhc_A BAMD, UPF0169 lipoprote 92.3 7.9 0.00027 40.1 19.7 62 469-533 151-212 (225)
32 1qqe_A Vesicular transport pro 92.2 1.1 3.6E-05 49.2 13.2 92 442-533 54-146 (292)
33 1hz4_A MALT regulatory protein 91.5 11 0.00038 41.9 21.1 64 442-505 270-333 (373)
34 4eqf_A PEX5-related protein; a 91.4 20 0.00067 39.6 23.6 80 442-533 230-309 (365)
35 3q15_A PSP28, response regulat 91.3 1.3 4.5E-05 50.2 13.1 89 445-534 202-290 (378)
36 3u3w_A Transcriptional activat 91.2 1.1 3.9E-05 48.8 12.1 92 442-533 132-224 (293)
37 3u3w_A Transcriptional activat 91.1 1.2 4E-05 48.7 12.0 86 442-527 172-259 (293)
38 2qfc_A PLCR protein; TPR, HTH, 91.0 1.1 3.9E-05 48.8 11.7 83 442-524 172-255 (293)
39 4ga2_A E3 SUMO-protein ligase 90.8 0.84 2.9E-05 44.7 9.4 80 448-533 13-93 (150)
40 2xev_A YBGF; tetratricopeptide 90.8 1.5 5.2E-05 40.5 10.9 86 442-533 19-104 (129)
41 3hym_B Cell division cycle pro 90.7 8.1 0.00028 41.6 18.3 86 442-533 210-298 (330)
42 2v5f_A Prolyl 4-hydroxylase su 90.6 0.62 2.1E-05 42.9 7.8 71 463-533 3-74 (104)
43 1g0d_A Protein-glutamine gamma 90.5 3 0.0001 51.0 15.4 108 1060-1177 579-689 (695)
44 2ho1_A Type 4 fimbrial biogene 90.4 10 0.00035 39.2 18.2 79 443-533 159-237 (252)
45 2pn5_A TEP1R, thioester-contai 90.3 0.95 3.2E-05 61.0 12.1 79 1065-1143 663-748 (1325)
46 1fch_A Peroxisomal targeting s 89.5 7.2 0.00025 43.0 17.0 81 442-528 268-353 (368)
47 3k9i_A BH0479 protein; putativ 89.3 0.76 2.6E-05 42.6 7.3 64 464-533 26-89 (117)
48 2icn_B Prolactin-inducible pro 88.7 0.68 2.3E-05 44.2 6.3 74 1065-1138 5-78 (118)
49 3ieg_A DNAJ homolog subfamily 88.1 32 0.0011 37.1 22.3 85 442-534 251-335 (359)
50 1elr_A TPR2A-domain of HOP; HO 87.7 4.7 0.00016 36.6 11.7 86 442-533 21-107 (131)
51 2qfc_A PLCR protein; TPR, HTH, 87.5 2.5 8.5E-05 46.0 11.1 91 443-533 133-224 (293)
52 3cu7_A Complement C5; Mg domai 87.4 0.38 1.3E-05 66.3 5.3 79 1066-1144 821-910 (1676)
53 3u4t_A TPR repeat-containing p 87.2 27 0.00093 36.3 19.0 86 442-533 159-249 (272)
54 2xpi_A Anaphase-promoting comp 87.2 35 0.0012 40.4 22.1 87 441-533 491-578 (597)
55 3idu_A Uncharacterized protein 87.1 3.7 0.00013 39.7 10.6 77 1063-1143 14-91 (127)
56 2gw1_A Mitochondrial precursor 87.0 40 0.0014 38.7 21.9 77 220-302 187-266 (514)
57 4eqf_A PEX5-related protein; a 86.1 44 0.0015 36.6 21.4 82 442-533 194-275 (365)
58 1hz4_A MALT regulatory protein 85.8 5.3 0.00018 44.7 13.0 92 442-533 70-163 (373)
59 3ieg_A DNAJ homolog subfamily 85.6 19 0.00064 39.0 17.1 64 468-533 237-300 (359)
60 2gw1_A Mitochondrial precursor 85.1 43 0.0015 38.4 20.9 86 442-533 389-477 (514)
61 3fp2_A TPR repeat-containing p 84.4 51 0.0018 38.1 21.3 64 233-302 209-272 (537)
62 2y4t_A DNAJ homolog subfamily 84.3 48 0.0016 37.4 20.6 85 442-534 274-358 (450)
63 1ex0_A Coagulation factor XIII 84.3 1.7 5.7E-05 53.6 8.1 101 1061-1171 625-727 (731)
64 1vjj_A Protein-glutamine gluta 84.1 89 0.003 38.4 23.0 178 618-893 490-677 (692)
65 2kck_A TPR repeat; tetratricop 84.1 4.1 0.00014 35.8 9.0 82 442-533 23-105 (112)
66 4abn_A Tetratricopeptide repea 83.8 31 0.0011 40.4 18.9 65 217-301 100-165 (474)
67 4gcn_A Protein STI-1; structur 83.7 11 0.00036 35.4 12.2 84 443-532 26-110 (127)
68 2l6j_A TPR repeat-containing p 83.5 2.9 9.9E-05 37.3 7.8 74 442-521 21-94 (111)
69 1elw_A TPR1-domain of HOP; HOP 83.5 7.2 0.00025 34.5 10.5 80 442-533 21-100 (118)
70 1vjj_A Protein-glutamine gluta 83.5 1.1 3.6E-05 55.1 5.9 81 1060-1144 588-670 (692)
71 2lni_A Stress-induced-phosphop 83.4 4 0.00014 37.4 8.9 79 443-533 34-112 (133)
72 4gcn_A Protein STI-1; structur 83.0 4 0.00014 38.5 8.8 60 468-533 11-70 (127)
73 3sz7_A HSC70 cochaperone (SGT) 82.8 6.6 0.00022 38.3 10.7 80 442-533 28-107 (164)
74 2kat_A Uncharacterized protein 82.6 4.6 0.00016 36.7 8.9 62 466-533 20-81 (115)
75 2l6j_A TPR repeat-containing p 82.4 5 0.00017 35.6 8.9 63 466-534 5-67 (111)
76 3rkv_A Putative peptidylprolyl 82.4 5.7 0.0002 38.6 10.0 87 442-534 28-126 (162)
77 2dba_A Smooth muscle cell asso 82.3 7.1 0.00024 36.5 10.4 83 442-533 45-127 (148)
78 2vyi_A SGTA protein; chaperone 82.3 8.3 0.00028 34.7 10.6 80 442-533 29-108 (131)
79 3ma5_A Tetratricopeptide repea 82.2 3.9 0.00013 36.7 8.0 62 466-533 8-69 (100)
80 3q49_B STIP1 homology and U bo 82.1 8 0.00027 35.8 10.6 80 442-533 26-105 (137)
81 4gco_A Protein STI-1; structur 81.9 4.5 0.00015 38.2 8.7 79 443-533 31-109 (126)
82 3upv_A Heat shock protein STI1 81.6 8.8 0.0003 35.3 10.6 80 442-533 21-100 (126)
83 2rpa_A Katanin P60 ATPase-cont 81.2 1.5 5.1E-05 38.7 4.4 42 468-509 15-67 (78)
84 3fp2_A TPR repeat-containing p 81.1 86 0.0029 36.2 23.8 231 219-534 243-491 (537)
85 1na0_A Designed protein CTPR3; 80.7 12 0.0004 33.4 10.9 80 442-533 26-105 (125)
86 3uq3_A Heat shock protein STI1 80.6 52 0.0018 33.4 23.8 63 221-304 7-69 (258)
87 4gco_A Protein STI-1; structur 80.0 5.6 0.00019 37.5 8.6 60 468-533 16-75 (126)
88 3upv_A Heat shock protein STI1 80.0 6.4 0.00022 36.3 8.9 64 465-534 4-67 (126)
89 3vtx_A MAMA; tetratricopeptide 79.7 4.4 0.00015 40.1 8.2 60 467-532 7-66 (184)
90 4g1t_A Interferon-induced prot 79.6 36 0.0012 38.8 17.3 82 217-309 49-130 (472)
91 4b4t_Q 26S proteasome regulato 79.5 8.4 0.00029 43.8 11.6 86 442-527 112-197 (434)
92 1na3_A Designed protein CTPR2; 79.3 7.5 0.00026 33.0 8.6 62 466-533 10-71 (91)
93 2fbn_A 70 kDa peptidylprolyl i 79.0 8.5 0.00029 38.8 10.3 86 442-533 55-150 (198)
94 2xev_A YBGF; tetratricopeptide 79.0 5.6 0.00019 36.5 8.2 63 468-533 5-67 (129)
95 4gyw_A UDP-N-acetylglucosamine 78.7 44 0.0015 41.7 18.5 60 222-301 12-71 (723)
96 3rkv_A Putative peptidylprolyl 78.0 6 0.00021 38.5 8.5 69 466-534 12-92 (162)
97 2q3z_A Transglutaminase 2; tra 77.9 2 6.7E-05 52.8 5.6 81 1060-1144 581-664 (687)
98 1a17_A Serine/threonine protei 77.5 13 0.00044 35.4 10.7 80 442-533 30-109 (166)
99 2xcb_A PCRH, regulatory protei 77.5 6.2 0.00021 37.6 8.2 79 443-533 36-114 (142)
100 1ex0_A Coagulation factor XIII 77.2 1E+02 0.0034 38.2 20.1 84 766-893 629-712 (731)
101 2q3z_A Transglutaminase 2; tra 76.9 63 0.0021 39.8 18.3 84 766-893 586-671 (687)
102 3qwp_A SET and MYND domain-con 76.7 5.9 0.0002 46.4 9.2 91 442-532 304-398 (429)
103 1hh8_A P67PHOX, NCF-2, neutrop 76.3 9.7 0.00033 38.4 9.8 87 442-534 54-150 (213)
104 4i17_A Hypothetical protein; T 75.5 10 0.00035 38.9 9.8 86 443-534 60-146 (228)
105 2fo7_A Synthetic consensus TPR 75.4 16 0.00053 32.8 10.1 78 443-532 53-130 (136)
106 3sz7_A HSC70 cochaperone (SGT) 75.2 8.6 0.00029 37.4 8.7 64 464-533 10-73 (164)
107 3q49_B STIP1 homology and U bo 75.2 9.3 0.00032 35.3 8.6 63 465-533 9-71 (137)
108 3qww_A SET and MYND domain-con 75.1 18 0.00062 42.3 12.8 92 442-533 315-410 (433)
109 1elw_A TPR1-domain of HOP; HOP 74.6 11 0.00037 33.2 8.6 62 466-533 5-66 (118)
110 1ihg_A Cyclophilin 40; ppiase 74.6 10 0.00034 43.3 10.3 86 442-533 240-335 (370)
111 3qky_A Outer membrane assembly 74.4 11 0.00036 39.8 9.8 63 468-533 151-223 (261)
112 1elr_A TPR2A-domain of HOP; HO 74.4 11 0.00036 34.1 8.6 62 466-533 5-66 (131)
113 3qky_A Outer membrane assembly 74.1 9.6 0.00033 40.2 9.4 85 443-533 33-125 (261)
114 2kc7_A BFR218_protein; tetratr 72.8 7.9 0.00027 33.8 7.1 61 469-534 4-64 (99)
115 2fbn_A 70 kDa peptidylprolyl i 72.7 7.8 0.00027 39.1 7.9 67 467-533 40-116 (198)
116 3gyz_A Chaperone protein IPGC; 72.5 8.3 0.00028 37.9 7.7 80 443-534 54-133 (151)
117 3ma5_A Tetratricopeptide repea 72.3 16 0.00055 32.4 9.1 64 442-511 24-87 (100)
118 1hh8_A P67PHOX, NCF-2, neutrop 72.1 14 0.00049 37.1 9.8 77 449-533 23-99 (213)
119 1na0_A Designed protein CTPR3; 71.6 15 0.0005 32.7 8.8 63 465-533 9-71 (125)
120 4ga2_A E3 SUMO-protein ligase 71.6 9.3 0.00032 37.0 7.8 72 443-526 49-120 (150)
121 2vgx_A Chaperone SYCD; alterna 71.6 11 0.00036 36.6 8.3 79 443-533 39-117 (148)
122 3ffl_A Anaphase-promoting comp 71.2 23 0.00078 35.8 10.4 68 460-527 58-144 (167)
123 2vyi_A SGTA protein; chaperone 71.2 13 0.00045 33.3 8.4 63 465-533 12-74 (131)
124 3as5_A MAMA; tetratricopeptide 70.6 25 0.00086 33.6 10.9 78 443-532 94-171 (186)
125 1hxi_A PEX5, peroxisome target 69.8 18 0.00062 33.5 9.2 80 442-533 34-113 (121)
126 1p5q_A FKBP52, FK506-binding p 69.7 19 0.00066 40.1 11.0 86 442-533 164-258 (336)
127 1na3_A Designed protein CTPR2; 69.5 20 0.00068 30.2 8.8 48 442-495 26-73 (91)
128 3cv0_A Peroxisome targeting si 69.3 1.2E+02 0.004 32.0 21.7 62 466-533 207-268 (327)
129 2r39_A FIXG-related protein; s 69.2 16 0.00053 34.6 8.5 50 1085-1136 34-83 (118)
130 3vtx_A MAMA; tetratricopeptide 68.8 25 0.00087 34.3 10.6 78 444-533 92-169 (184)
131 1ihg_A Cyclophilin 40; ppiase 68.6 14 0.00049 41.9 9.7 67 468-534 226-302 (370)
132 1kt0_A FKBP51, 51 kDa FK506-bi 68.5 23 0.00078 41.4 11.7 87 442-534 285-380 (457)
133 2fo7_A Synthetic consensus TPR 68.2 26 0.00089 31.2 9.8 79 443-533 19-97 (136)
134 3n71_A Histone lysine methyltr 67.6 32 0.0011 40.8 12.8 92 442-533 326-421 (490)
135 3urz_A Uncharacterized protein 67.5 21 0.00072 36.4 9.9 66 463-534 52-117 (208)
136 2vq2_A PILW, putative fimbrial 67.2 24 0.00082 35.2 10.2 61 466-532 114-174 (225)
137 2xzz_A Protein-glutamine gamma 67.0 16 0.00054 33.8 7.8 84 765-893 4-88 (102)
138 2lni_A Stress-induced-phosphop 66.7 8 0.00027 35.2 5.9 61 467-533 18-78 (133)
139 2dba_A Smooth muscle cell asso 66.4 23 0.00078 32.8 9.2 64 467-533 30-93 (148)
140 3qwp_A SET and MYND domain-con 66.3 19 0.00065 42.0 10.3 77 443-519 347-427 (429)
141 2kck_A TPR repeat; tetratricop 65.7 13 0.00046 32.3 7.0 59 469-533 10-68 (112)
142 1a17_A Serine/threonine protei 65.6 20 0.00069 33.9 8.9 62 466-533 14-75 (166)
143 2kc7_A BFR218_protein; tetratr 65.5 12 0.0004 32.7 6.5 70 443-518 18-87 (99)
144 2ho1_A Type 4 fimbrial biogene 65.3 26 0.00088 36.0 10.3 80 444-533 124-203 (252)
145 3as5_A MAMA; tetratricopeptide 65.0 30 0.001 33.0 10.1 80 442-533 59-138 (186)
146 3txn_A 26S proteasome regulato 64.9 34 0.0012 39.4 11.8 83 441-523 75-157 (394)
147 2xcb_A PCRH, regulatory protei 64.7 20 0.00067 34.0 8.4 61 467-533 20-80 (142)
148 1xnf_A Lipoprotein NLPI; TPR, 64.5 22 0.00076 36.9 9.6 62 466-533 78-139 (275)
149 2q7f_A YRRB protein; TPR, prot 64.1 31 0.0011 35.0 10.5 62 217-298 21-82 (243)
150 2q7f_A YRRB protein; TPR, prot 64.0 31 0.0011 35.0 10.5 59 468-532 128-186 (243)
151 4i17_A Hypothetical protein; T 63.4 16 0.00055 37.3 8.1 81 442-533 24-104 (228)
152 1hxi_A PEX5, peroxisome target 62.8 20 0.0007 33.1 8.0 59 469-533 21-79 (121)
153 2vq2_A PILW, putative fimbrial 61.6 39 0.0013 33.5 10.6 61 468-532 79-140 (225)
154 2v5f_A Prolyl 4-hydroxylase su 61.5 35 0.0012 30.7 9.1 72 217-301 3-74 (104)
155 2vgx_A Chaperone SYCD; alterna 61.3 24 0.00082 34.0 8.4 62 467-534 23-84 (148)
156 2kat_A Uncharacterized protein 60.8 41 0.0014 30.1 9.6 60 442-507 36-95 (115)
157 3u4t_A TPR repeat-containing p 59.6 25 0.00085 36.6 8.9 82 443-533 55-136 (272)
158 1p5q_A FKBP52, FK506-binding p 59.1 23 0.0008 39.4 9.0 70 465-534 147-225 (336)
159 2yhc_A BAMD, UPF0169 lipoprote 58.7 21 0.0007 36.9 7.9 55 462-519 38-92 (225)
160 3gyz_A Chaperone protein IPGC; 58.4 27 0.00092 34.1 8.3 63 466-534 37-99 (151)
161 1xnf_A Lipoprotein NLPI; TPR, 58.0 39 0.0013 35.0 10.1 61 466-533 112-172 (275)
162 3bee_A Putative YFRE protein; 57.8 17 0.0006 32.5 6.2 64 441-510 25-88 (93)
163 1kt0_A FKBP51, 51 kDa FK506-bi 57.0 30 0.001 40.4 9.8 69 466-534 269-346 (457)
164 2if4_A ATFKBP42; FKBP-like, al 55.4 24 0.00081 39.4 8.2 87 442-534 196-293 (338)
165 4dsu_A GTPase KRAS, isoform 2B 54.6 77 0.0026 31.0 11.3 87 90-184 76-162 (189)
166 2pl2_A Hypothetical conserved 54.4 32 0.0011 35.2 8.5 78 443-533 102-179 (217)
167 2e2e_A Formate-dependent nitri 54.1 58 0.002 31.5 10.1 81 442-534 61-144 (177)
168 3hym_B Cell division cycle pro 53.9 28 0.00095 37.2 8.3 85 443-533 177-264 (330)
169 3n71_A Histone lysine methyltr 53.7 2.4E+02 0.0081 33.2 16.9 100 215-332 347-446 (490)
170 2vsy_A XCC0866; transferase, g 52.9 34 0.0012 40.8 9.6 62 466-533 92-156 (568)
171 1wao_1 Serine/threonine protei 52.6 40 0.0014 39.6 10.0 80 442-533 23-102 (477)
172 1g0d_A Protein-glutamine gamma 52.3 29 0.001 42.5 8.6 70 1065-1136 470-546 (695)
173 3qww_A SET and MYND domain-con 51.9 92 0.0032 36.2 12.7 85 215-311 336-420 (433)
174 1fch_A Peroxisomal targeting s 51.6 51 0.0018 35.9 10.2 64 219-302 64-127 (368)
175 2e2e_A Formate-dependent nitri 51.5 42 0.0014 32.6 8.5 77 445-533 30-109 (177)
176 2r5s_A Uncharacterized protein 51.3 42 0.0014 32.8 8.5 78 445-532 94-171 (176)
177 2c2l_A CHIP, carboxy terminus 51.3 36 0.0012 36.6 8.7 64 464-533 37-100 (281)
178 4g1t_A Interferon-induced prot 50.2 39 0.0013 38.6 9.2 67 466-532 52-121 (472)
179 1w3b_A UDP-N-acetylglucosamine 48.7 3E+02 0.01 30.0 20.7 61 467-533 273-333 (388)
180 2y4t_A DNAJ homolog subfamily 47.1 75 0.0026 35.7 10.9 81 442-534 43-123 (450)
181 3ugu_A S-arrestin; arrestin fo 46.1 17 0.00059 41.3 4.9 78 1063-1140 208-296 (380)
182 2c2l_A CHIP, carboxy terminus 45.9 59 0.002 34.9 9.3 51 448-498 54-105 (281)
183 3k9i_A BH0479 protein; putativ 45.6 41 0.0014 30.3 6.9 51 442-498 44-94 (117)
184 2vsy_A XCC0866; transferase, g 44.7 70 0.0024 38.0 10.6 31 466-496 126-159 (568)
185 4abn_A Tetratricopeptide repea 44.2 49 0.0017 38.6 8.9 85 444-534 80-166 (474)
186 4b4t_Q 26S proteasome regulato 43.4 55 0.0019 36.8 8.9 92 442-533 72-163 (434)
187 2hr2_A Hypothetical protein; a 42.7 72 0.0025 31.8 8.5 69 465-533 11-85 (159)
188 3but_A Uncharacterized protein 41.6 77 0.0026 30.8 8.2 59 1078-1136 14-75 (136)
189 3isy_A Bsupi, intracellular pr 41.2 95 0.0032 29.5 8.5 62 1079-1140 15-93 (120)
190 2ys4_A Hydrocephalus-inducing 41.0 86 0.0029 29.4 8.4 62 1077-1143 36-97 (122)
191 1xi4_A Clathrin heavy chain; a 40.6 8.4E+02 0.029 32.9 21.3 83 447-530 1479-1588(1630)
192 1pc2_A Mitochondria fission pr 39.9 62 0.0021 32.1 7.3 50 441-494 51-100 (152)
193 3idu_A Uncharacterized protein 39.3 2.6E+02 0.0089 26.6 11.6 71 616-710 25-95 (127)
194 3lpz_A GET4 (YOR164C homolog); 39.0 3.9E+02 0.013 29.9 14.5 70 464-533 34-105 (336)
195 3mkr_A Coatomer subunit epsilo 38.7 1.1E+02 0.0039 32.8 10.2 70 443-524 184-253 (291)
196 1nzn_A CGI-135 protein, fissio 38.4 51 0.0017 31.6 6.2 50 441-494 54-103 (126)
197 2hr2_A Hypothetical protein; a 37.8 3.1E+02 0.011 27.1 12.6 92 442-533 28-130 (159)
198 4gyw_A UDP-N-acetylglucosamine 37.6 95 0.0033 38.7 10.4 61 467-533 79-139 (723)
199 2if4_A ATFKBP42; FKBP-like, al 37.3 19 0.00066 40.1 3.7 67 468-534 182-259 (338)
200 2xpi_A Anaphase-promoting comp 36.7 60 0.002 38.3 8.1 48 447-494 287-334 (597)
201 2vkj_A TM1634; membrane protei 36.1 1.9E+02 0.0065 25.9 8.8 72 444-518 12-103 (106)
202 2r5s_A Uncharacterized protein 36.0 62 0.0021 31.5 6.9 48 448-495 22-70 (176)
203 3o48_A Mitochondria fission 1 33.7 73 0.0025 30.9 6.5 57 432-493 50-106 (134)
204 3urz_A Uncharacterized protein 33.6 94 0.0032 31.3 8.0 66 468-533 7-82 (208)
205 2pl2_A Hypothetical conserved 33.5 83 0.0028 32.0 7.6 58 469-532 9-66 (217)
206 1w3b_A UDP-N-acetylglucosamine 33.2 86 0.0029 34.6 8.3 61 467-533 307-367 (388)
207 2l0d_A Cell surface protein; s 33.1 3.1E+02 0.011 25.6 11.8 34 859-894 52-88 (114)
208 2wpv_A GET4, UPF0363 protein Y 32.1 3.5E+02 0.012 29.9 12.7 71 464-534 32-104 (312)
209 1y8m_A FIS1; mitochondria, unk 31.3 87 0.003 30.7 6.6 53 436-493 53-105 (144)
210 1suj_A CONE arrestin; sensory 30.7 49 0.0017 38.0 5.5 77 1063-1139 189-276 (392)
211 2bov_A RAla, RAS-related prote 30.5 4E+02 0.014 26.1 12.7 90 90-187 86-176 (206)
212 3kkq_A RAS-related protein M-R 28.6 4E+02 0.014 25.6 12.6 87 90-184 90-178 (183)
213 2pzi_A Probable serine/threoni 28.4 1E+02 0.0034 38.0 8.4 57 469-532 471-527 (681)
214 3isy_A Bsupi, intracellular pr 28.4 3.8E+02 0.013 25.3 11.3 30 863-894 73-105 (120)
215 2dl1_A Spartin; SPG20, MIT, st 28.4 1.6E+02 0.0055 27.7 7.6 55 218-273 14-78 (116)
216 1ouv_A Conserved hypothetical 27.1 1.5E+02 0.005 30.9 8.4 59 466-532 111-177 (273)
217 3qou_A Protein YBBN; thioredox 27.1 1E+02 0.0036 32.9 7.4 54 468-527 120-173 (287)
218 2l0d_A Cell surface protein; s 26.9 2.3E+02 0.008 26.5 8.6 65 1074-1144 11-80 (114)
219 4a26_A Putative C-1-tetrahydro 26.8 77 0.0026 35.0 6.1 59 110-171 20-78 (300)
220 3q72_A GTP-binding protein RAD 26.3 4.1E+02 0.014 24.9 11.1 66 89-159 72-138 (166)
221 1yyc_A LEA protein, putative l 25.8 1E+02 0.0035 31.2 6.3 65 1072-1136 52-119 (174)
222 1zu2_A Mitochondrial import re 25.7 48 0.0016 33.1 3.8 52 442-493 56-119 (158)
223 2e6j_A Hydin protein; PAPD, st 25.3 36 0.0012 31.2 2.7 63 1078-1143 22-87 (112)
224 3t5g_A GTP-binding protein RHE 25.0 4.6E+02 0.016 25.0 12.5 65 90-159 78-143 (181)
225 1xo8_A AT1G01470; structural g 24.9 95 0.0032 30.6 5.8 59 1075-1133 32-93 (151)
226 3oes_A GTPase rhebl1; small GT 24.8 3.3E+02 0.011 26.9 10.3 65 90-159 96-161 (201)
227 1z06_A RAS-related protein RAB 24.0 3.1E+02 0.011 26.7 9.8 75 89-171 93-168 (189)
228 3mkq_A Coatomer beta'-subunit; 23.9 2.7E+02 0.0091 34.1 11.2 64 469-532 685-763 (814)
229 3o0l_A Uncharacterized protein 23.7 1.4E+02 0.0049 27.8 6.5 63 1070-1132 26-92 (112)
230 4b4u_A Bifunctional protein fo 23.5 89 0.003 34.5 5.7 59 110-172 37-95 (303)
231 2pzi_A Probable serine/threoni 23.3 1.2E+02 0.004 37.4 7.6 79 448-533 483-562 (681)
232 3mkr_A Coatomer subunit epsilo 23.2 2.3E+02 0.0077 30.3 9.2 83 442-534 147-229 (291)
233 2c2x_A Methylenetetrahydrofola 22.6 92 0.0032 34.1 5.6 58 110-172 17-74 (281)
234 3q85_A GTP-binding protein REM 22.4 4.8E+02 0.017 24.4 11.4 86 90-183 76-162 (169)
235 3qou_A Protein YBBN; thioredox 22.3 1.7E+02 0.0058 31.2 7.9 58 467-528 221-278 (287)
236 1ouv_A Conserved hypothetical 21.7 2.3E+02 0.008 29.2 8.7 58 467-532 76-141 (273)
237 3l07_A Bifunctional protein fo 21.1 1.1E+02 0.0038 33.5 5.9 58 110-171 18-75 (285)
238 4a5o_A Bifunctional protein fo 21.1 1.1E+02 0.0037 33.6 5.7 58 110-171 19-76 (286)
239 1wao_1 Serine/threonine protei 20.7 51 0.0018 38.7 3.4 59 470-534 11-69 (477)
240 4f3v_A ESX-1 secretion system 20.7 2.4E+02 0.0082 30.7 8.5 75 449-531 119-197 (282)
241 2h6f_A Protein farnesyltransfe 20.5 1E+02 0.0036 34.9 5.9 79 448-532 148-227 (382)
242 2nzj_A GTP-binding protein REM 20.4 5.4E+02 0.018 24.2 12.4 75 79-158 67-142 (175)
243 1kao_A RAP2A; GTP-binding prot 20.3 5.2E+02 0.018 23.9 11.6 73 91-171 76-149 (167)
244 4f3v_A ESX-1 secretion system 20.2 3.7E+02 0.013 29.2 9.9 64 465-533 171-236 (282)
245 2a9k_A RAS-related protein RAL 20.1 5.6E+02 0.019 24.3 12.0 82 90-179 90-172 (187)
No 1
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.48 E-value=0.013 Score=67.29 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
.-...+..+.+|++.+...+.......+...+|..|...|++++|+.+|+++...+...+-......++..+..|+..+|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 35777888888888888877777788888888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHccC
Q 040980 520 IVRDFVEYSLEMAAL 534 (1193)
Q Consensus 520 ~~~~~v~~~leLls~ 534 (1193)
+.++-+.+.-+.+.+
T Consensus 358 ~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 358 GHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 888888877777754
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.38 E-value=0.025 Score=64.72 Aligned_cols=58 Identities=5% Similarity=-0.066 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 040980 440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497 (1193)
Q Consensus 440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~ 497 (1193)
.-...+.++.+|++.+...+.......+...+|..|...|++++|+.+|+++...+++
T Consensus 318 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 3577788888888888888877877888889999999999999999999988877655
No 3
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.32 E-value=0.046 Score=59.61 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=147.3
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
...+..+.+|......++.+.|+++|+.|.+.....-.. ...+ .+.+.+..+++..|+..+|+..+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~-----~~~~~l~~~~~~~g~~~~A~~~~ 106 (338)
T 3ro2_A 41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---------LGEA-----KASGNLGNTLKVLGNFDEAIVCC 106 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHH-----HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---------HHHH-----HHHHHHHHHHHHccCHHHHHHHH
Confidence 567788899999999999999999999999887654111 1111 23456777888999999999999
Q ss_pred HHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHH
Q 040980 297 HQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRS 376 (1193)
Q Consensus 297 ~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~ 376 (1193)
++-+..+.+... ......-+..++.-|...++... +.. ....|-.+..|.....+-.+
T Consensus 107 ~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 107 QRHLDISRELND-KVGEARALYNLGNVYHAKGKSFG-CPG--------------------PQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSS-SSS--------------------CC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccc-cch--------------------hhhhhhhhhhHHHHHHHHHH
Confidence 998877765321 11111122344444444444211 100 01222222333322222222
Q ss_pred HHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHHh
Q 040980 377 SLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYG 456 (1193)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f~ 456 (1193)
.++.+....+.... . + ..+ .. +...+... .....-...++.+.+|++.+.
T Consensus 165 ~~~~a~~~~~~~~~---~-~------~~~---~~----------------~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 165 LYEENLSLVTALGD---R-A------AQG---RA----------------FGNLGNTH-YLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHTC---H-H------HHH---HH----------------HHHHHHHH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---H-H------HHH---HH----------------HHHHHHHH-HHhCCHHHHHHHHHHHHHHHH
Confidence 22222211110000 0 0 000 00 00000000 001123456778888888888
Q ss_pred hcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 457 NHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 457 ~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..+...........+|..|+..|++++|+.+|+.+...+...+-......++..+..|+...|+.++-+.+.-+.+
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8777777777888889999999999999999999888777776666777778888888888888877666655544
No 4
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.26 E-value=0.035 Score=60.51 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+..+.+|++.+...+...........+|..|+..|++++|+.+|+.+...+...+-......++..+..|+..+|+.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 45788899999998888877888888899999999999999999999999888877777777778889999999999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 320 ~~A~~~~~~a~~ 331 (338)
T 3ro2_A 320 DQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766664
No 5
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.18 E-value=0.049 Score=61.71 Aligned_cols=92 Identities=11% Similarity=-0.034 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+..+.+|++.+...+...........+|..|...|+|++|+.+|+.+.......+-......++..+..|+..+|+.
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888999888888777777888889999999999999999999999888887776667778888899999999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+.-+.+.-+.+.
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877776666553
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.059 Score=60.98 Aligned_cols=220 Identities=12% Similarity=0.050 Sum_probs=141.4
Q ss_pred hhhhHHhHHHHHHHHhhC--------------------HHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRD--------------------WVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLH 276 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d--------------------~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~ 276 (1193)
...+..+-+|.+...+++ ++.|+++|+.|.+.....-. .... ..+.
T Consensus 125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~---------~~~~-----~~~~ 190 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD---------RAAQ-----GRAF 190 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC---------HHHH-----HHHH
T ss_pred chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC---------cHHH-----HHHH
Confidence 456667788888888888 88888888888877655311 1111 1234
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCcc
Q 040980 277 FKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTES 356 (1193)
Q Consensus 277 ~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~ 356 (1193)
+.+..+++..|+..+|+..|++=+..+.+. ++ ..+.+.-+..+|.+....-.
T Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~~~la~~~~~~g~-------------------- 242 (406)
T 3sf4_A 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GD-----KAAERRAYSNLGNAYIFLGE-------------------- 242 (406)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TC-----HHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CC-----cHHHHHHHHHHHHHHHHcCC--------------------
Confidence 556677888899999999999988776552 11 23444555566666544211
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCc
Q 040980 357 EFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGK 436 (1193)
Q Consensus 357 ~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~ 436 (1193)
|..|-.+..+-.+... +..+. ...+ .. +...+... .
T Consensus 243 -------~~~A~~~~~~al~~~~------~~~~~-----------~~~~---~~----------------~~~la~~~-~ 278 (406)
T 3sf4_A 243 -------FETASEYYKKTLLLAR------QLKDR-----------AVEA---QS----------------CYSLGNTY-T 278 (406)
T ss_dssp -------HHHHHHHHHHHHHHHH------HTTCH-----------HHHH---HH----------------HHHHHHHH-H
T ss_pred -------hHHHHHHHHHHHHHHH------hCcCc-----------hHHH---HH----------------HHHHHHHH-H
Confidence 2333333222111110 00000 0000 00 00000000 0
Q ss_pred ccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 040980 437 RFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSR 516 (1193)
Q Consensus 437 ~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~ 516 (1193)
....-...+..+.+|++.+...+.......+...+|..|...|++++|+.+|+++...++..+-......++..+..++.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 01123457888999999988888777778888999999999999999999999999999888877788888889999999
Q ss_pred HcCChh
Q 040980 517 KQGIVR 522 (1193)
Q Consensus 517 ~l~~~~ 522 (1193)
.+|+..
T Consensus 359 ~~g~~~ 364 (406)
T 3sf4_A 359 VLGLSY 364 (406)
T ss_dssp HHHTTS
T ss_pred HhhHhH
Confidence 988764
No 7
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.19 Score=54.31 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=143.9
Q ss_pred chhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 216 DLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 216 ~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
.-.++..+.+|....-+++++.|+++|+.|.+......+... .... .+.+.+..+++..|+..+|+..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------~~~~-----~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-------PDVA-----TMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-------HHHH-----HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-------HHHH-----HHHHHHHHHHHHCCCHHHHHHH
Confidence 367788889999999999999999999999998877643221 1111 2344566778889999999999
Q ss_pred HHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 040980 296 FHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKR 375 (1193)
Q Consensus 296 ~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr 375 (1193)
|++=+..+.+..|... ...+.-+..+|.+....-. |..|..+..+-.
T Consensus 92 ~~~al~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~---------------------------~~~A~~~~~~a~ 138 (311)
T 3nf1_A 92 LNDALAIREKTLGKDH------PAVAATLNNLAVLYGKRGK---------------------------YKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTC---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHHcCc---------------------------HHHHHHHHHHHH
Confidence 9998888877665442 1223334445555543211 344444433322
Q ss_pred HHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHH
Q 040980 376 SSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESY 455 (1193)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f 455 (1193)
+..+... +. .. +.. . .. +...+... .....-...++++.+|++.+
T Consensus 139 ~~~~~~~------~~---~~----~~~--~---~~----------------~~~la~~~-~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 139 EIREKVL------GK---DH----PDV--A---KQ----------------LNNLALLC-QNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp HHHHHHH------CT---TC----HHH--H---HH----------------HHHHHHHH-HTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------CC---CC----hHH--H---HH----------------HHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Confidence 2111000 00 00 000 0 00 00000000 01112345788899999888
Q ss_pred hhc--CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCc---------------------------------
Q 040980 456 GNH--KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGW--------------------------------- 500 (1193)
Q Consensus 456 ~~~--~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW--------------------------------- 500 (1193)
... +.......+...+|..|+..|++++|+.+|+++...+...++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 775 334555677889999999999999999999998865543211
Q ss_pred ----------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 501 ----------VTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 501 ----------~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..-...++..+..|+...|+.++-+.+.-+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 13344566677888888888776655544433
No 8
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=96.81 E-value=0.0062 Score=66.68 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=81.9
Q ss_pred cCCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccC----CCcEEeCCCCeEEEEEEEEECcc
Q 040980 1064 ELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVH----NDTVFVLPKSKHILCYKVVPLGS 1139 (1193)
Q Consensus 1064 ~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k----~~~l~llP~s~~~~~~~l~PL~~ 1139 (1193)
-..|+.|.+.+|..++.|+.+.+...|.|+++..+++.+.|+.+++|-+.+.. +.++.|.|+++..+.|.+.|+..
T Consensus 78 v~kpffv~~~LP~sv~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~ 157 (252)
T 3hrz_B 78 VMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQ 157 (252)
T ss_dssp BCCSEEEEECCCSCEETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEECSS
T ss_pred EECCEEEEcCCCcEEeeCCEEEEEEEEEcccCceEEEEEEEEcCCceEeecCCCCceEEEEEECCCCeEEEEEEEEeccC
Confidence 45678999999999999999999999999999999999999999998887643 34578999999999999999999
Q ss_pred cceecCeeEEEeccccccccCCCCccEEEEecCC
Q 040980 1140 GLLQLPKVTVISVRYSAEFQASNTASTVFVFPSK 1173 (1193)
Q Consensus 1140 G~~~LP~l~l~~~~~~~~~~~~~~~~~VfV~P~~ 1173 (1193)
|.+.+ +++.......... .....+-|.|.+
T Consensus 158 G~~~i---~v~A~~~~~~~~D-~v~k~L~V~peG 187 (252)
T 3hrz_B 158 GLHDV---EIKASVQEALWSD-GVRKKLKVVPEG 187 (252)
T ss_dssp EEEEE---EEEEEETTSSCEE-EEEEEEEEECSS
T ss_pred CcEEE---EEEEEecCCCcCc-eEEEEEEECCCC
Confidence 98653 4443211111111 234666676655
No 9
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.76 E-value=0.56 Score=49.54 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHH
Q 040980 189 LSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEI 268 (1193)
Q Consensus 189 ~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~ 268 (1193)
.|..+|+.-.+..++.... . +...++..+-+|......++.+.|+++|+.|.+...+..+... ....
T Consensus 19 ~A~~~~~~al~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~ 85 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGH---D---HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-------PAVA 85 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCS---S---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-------HHHH
T ss_pred HHHHHHHHHHHHHHHhcCC---C---CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-------hHHH
Confidence 3555666555554432221 1 2356777788999999999999999999999998877655432 1111
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCC
Q 040980 269 KTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGA 309 (1193)
Q Consensus 269 r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~ 309 (1193)
.+.+.+..+++..|+..+|+..|++=+..+++..|.
T Consensus 86 -----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 86 -----ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp -----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred -----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 234556777888999999999999988877665554
No 10
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.61 E-value=0.11 Score=59.21 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=135.9
Q ss_pred chhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 216 DLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 216 ~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
.+..+|.|-.|.+.-.++|.+.|+++|+.|.+.+.++-. .... ..+.+.+-.+++..|+...|+..
T Consensus 98 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~-----a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------DIEK-----AEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---------HHHH-----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---------hHHH-----HHHHHHHHHHHHHcCCcHHHHHH
Confidence 467788999999999999999999999999887654310 1111 23567788889999999999999
Q ss_pred HHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHH
Q 040980 296 FHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKR 375 (1193)
Q Consensus 296 ~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr 375 (1193)
+++=+..+.+..+.. ...+.-+..+|.+....-. |..|-.+..+--
T Consensus 164 ~~~al~~~~~~~~~~-------~~~~~~~~~lg~~y~~~~~---------------------------~~~A~~~~~~al 209 (378)
T 3q15_A 164 ILQALDIYQNHPLYS-------IRTIQSLFVIAGNYDDFKH---------------------------YDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHTSTTCH-------HHHHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCch-------hhHHHHHHHHHHHHHHhCC---------------------------HHHHHHHHHHHH
Confidence 999888776533311 1344444555555443211 333333322211
Q ss_pred HHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHH
Q 040980 376 SSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESY 455 (1193)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f 455 (1193)
+.++ +..+. ...+. . +...+... .........++.+.+|++.+
T Consensus 210 ~~~~------~~~~~-----------~~~~~---~----------------~~~lg~~y-~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 210 ELAM------DIQND-----------RFIAI---S----------------LLNIANSY-DRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHH------HTTCH-----------HHHHH---H----------------HHHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHH------HcCCH-----------HHHHH---H----------------HHHHHHHH-HHCCCHHHHHHHHHHHHHHH
Confidence 1110 00000 00000 0 00000000 01234667777777777777
Q ss_pred hhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 456 GNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 456 ~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
...+.... ......+|..|+..|++++|+.+|+++.......+-..... .+..+...+...++. ..+.-+++.+
T Consensus 253 ~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~-~~~~~al~~~ 326 (378)
T 3q15_A 253 REKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDE-RKIHDLLSYF 326 (378)
T ss_dssp HHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCH-HHHHHHHHHH
T ss_pred HhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcH-HHHHHHHHHH
Confidence 77777776 77777888888888888888888888887776666555544 334444444445544 4455555555
No 11
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.39 E-value=0.96 Score=49.96 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
-++.+.+|++.+...+..+....+...+|..|...|+|++|+.+|++++..++..+........+..+..|+..+|+.+.
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 45666666666666666566666777888888888888888888888877777665444444556666777777788777
Q ss_pred HHHHHHHHc
Q 040980 524 FVEYSLEMA 532 (1193)
Q Consensus 524 ~v~~~leLl 532 (1193)
-+.+.-+.+
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777666655
No 12
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.25 E-value=0.42 Score=54.29 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=155.4
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
+...|.|-.|.+.-.++|.+.|+++|+.|.+.+..+ . . .... ..+.+.+-.+++..|+...|+..+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~----~---~--~~~~-----a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV----K---D--RIEK-----AEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC----C---C--HHHH-----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC----C---C--HHHH-----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556678889999999999999999999998765442 1 0 1111 134567778888999999999999
Q ss_pred HHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHH
Q 040980 297 HQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRS 376 (1193)
Q Consensus 297 ~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~ 376 (1193)
++=+..+.+..+. ....+.-+..+|.+....-. |..|-.+..+--+
T Consensus 167 ~~al~~~~~~~~~-------~~~~~~~~~~lg~~~~~~g~---------------------------~~~A~~~~~~al~ 212 (383)
T 3ulq_A 167 RQAYEIYKEHEAY-------NIRLLQCHSLFATNFLDLKQ---------------------------YEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHTCSTT-------HHHHHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc-------hHHHHHHHHHHHHHHHHhcC---------------------------HHHHHHHHHHHHH
Confidence 9988888764221 12344455566665544211 3444444332222
Q ss_pred HHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHHh
Q 040980 377 SLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYG 456 (1193)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f~ 456 (1193)
.+. +..+. ...+. . +...+... .....-...++.+.+|++.+.
T Consensus 213 ~~~------~~~~~-----------~~~~~---~----------------~~~lg~~y-~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 213 MAE------AEKQP-----------QLMGR---T----------------LYNIGLCK-NSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHH------HTTCH-----------HHHHH---H----------------HHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH------HcCCh-----------HHHHH---H----------------HHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 111 00000 00000 0 00000000 112347888999999999988
Q ss_pred hcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 457 NHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 457 ~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+...........+|..|+..|++++|..+|+++....+..+-...... +..+..++...|+. .++.-+++++.
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~al~~~~ 330 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE-EAIQGFFDFLE 330 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH-HHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH-HHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999888777766 66788888888887 66777777774
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.06 E-value=0.87 Score=51.64 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=148.0
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
...+..+.+|.+.-..++.+.|+++|+.|.+...+.-.. ... .+ ...+-+-.++...|+..+|+..|
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~----~~-~~~~~lg~~~~~~g~~~~A~~~~ 207 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIR----LL-QCHSLFATNFLDLKQYEDAISHF 207 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHH----HH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHH----HH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence 567888999999999999999999999999887653110 011 11 23345567788889999999999
Q ss_pred HHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHH
Q 040980 297 HQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRS 376 (1193)
Q Consensus 297 ~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~ 376 (1193)
++=+..+.+. + + ....+.-+.-+|.+...--. |..|-.|..+--+
T Consensus 208 ~~al~~~~~~-~--~-----~~~~~~~~~~lg~~y~~~g~---------------------------~~~A~~~~~~al~ 252 (383)
T 3ulq_A 208 QKAYSMAEAE-K--Q-----PQLMGRTLYNIGLCKNSQSQ---------------------------YEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHT-T--C-----HHHHHHHHHHHHHHHHHTTC---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-C--C-----hHHHHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHH
Confidence 9988777654 1 1 23444455556666544211 3455444433222
Q ss_pred HHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHHh
Q 040980 377 SLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYG 456 (1193)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f~ 456 (1193)
.++ +..+ .+ .. . .. +...+... .....-...++.+.+|++...
T Consensus 253 ~~~------~~~~----~~-----~~--~---~~----------------~~~l~~~~-~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 253 VFE------ESNI----LP-----SL--P---QA----------------YFLITQIH-YKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHH------HTTC----GG-----GH--H---HH----------------HHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH------hhcc----ch-----hH--H---HH----------------HHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 211 0000 00 00 0 00 00000000 122358888999999999999
Q ss_pred hcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 457 NHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 457 ~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..+....... ...+|..|...|++ ..++.+...+++.+-..-...+...+..++...|+.+.-+.+.-+.+
T Consensus 296 ~~~~~~~~~~-~~~l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 296 KAGDVIYLSE-FEFLKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTCHHHHHH-HHHHHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHH-HHHHHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888877 45699999999998 67788888888877777777888899999999999876665544443
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.01 E-value=0.5 Score=50.94 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCccchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHH
Q 040980 187 GELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLV 266 (1193)
Q Consensus 187 ~e~a~~yY~~~~rrik~~~~k~~l~~~~~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~ 266 (1193)
++.|..+|+...+..++.... ......+..+.+|...-..++.+.|+++|+.|.+...+..+... +..
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~- 110 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGH------DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH-----PAV- 110 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC-----HHH-
T ss_pred HHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-----hHH-
Confidence 456788888777666643211 12366777888999998899999999999999998877654432 011
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCC
Q 040980 267 EIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAP 310 (1193)
Q Consensus 267 E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~ 310 (1193)
....+.+..+++..|+..+|+..|++=+..+++..|..
T Consensus 111 ------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 111 ------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp ------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 12445677788999999999999999888887665543
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.66 E-value=0.12 Score=49.61 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+..+.+|++.+...+.......+...+|..|+..|+|++|+.+|+++...+...+.......++..+..|+...|+.
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH
Confidence 45788899999999888877777888899999999999999999999999999888888888888889999999999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+.-+.+.-+.+.
T Consensus 106 ~~A~~~~~~a~~ 117 (164)
T 3ro3_A 106 EKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877776666553
No 16
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.46 E-value=1.2 Score=47.02 Aligned_cols=180 Identities=16% Similarity=0.052 Sum_probs=112.9
Q ss_pred hhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcccCCCc
Q 040980 232 RRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPE 311 (1193)
Q Consensus 232 r~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~~~~~~G~~e 311 (1193)
..|++.|+++|++|.+.+..+.+.+. -..+ .+.+.+-.+++..|+..+|+..|++=+..+.+..|...
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDH-------PDVA-----TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSS-------HHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC-------HHHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 46899999999999999988875542 1111 12344566788899999999999998877766655332
Q ss_pred chhhhHHHHHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 040980 312 VVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASEL 391 (1193)
Q Consensus 312 ~~f~h~~W~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~ 391 (1193)
.....-+..+|.+....-. |..|
T Consensus 82 ------~~~~~~~~~l~~~~~~~g~---------------------------~~~A------------------------ 104 (283)
T 3edt_B 82 ------PAVAATLNNLAVLYGKRGK---------------------------YKEA------------------------ 104 (283)
T ss_dssp ------HHHHHHHHHHHHHHHTTTC---------------------------HHHH------------------------
T ss_pred ------hHHHHHHHHHHHHHHHhcc---------------------------HHHH------------------------
Confidence 1222233333433332110 2222
Q ss_pred CCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHHHHHHHhhc--CcchHHHHHHH
Q 040980 392 DSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNH--KARRMGSFCGF 469 (1193)
Q Consensus 392 ~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~kA~~~f~~~--~~~R~~~~l~~ 469 (1193)
++++.+|++.+... ...........
T Consensus 105 -----------------------------------------------------~~~~~~al~~~~~~~~~~~~~~~~~~~ 131 (283)
T 3edt_B 105 -----------------------------------------------------EPLCKRALEIREKVLGKFHPDVAKQLN 131 (283)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 22223333332221 11122344567
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 470 QMAVEYFALDDFNNAKQLFDGVANQYRQE--GWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e--gW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.+|..|+..|+|++|+.+|+++...+++. +-......++..+..|+...|+.+.-+.+.-+.+.
T Consensus 132 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78999999999999999999988776543 12334556777888999999998776666655553
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.28 E-value=0.19 Score=48.12 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.+|++.+...+.......+...+|..|+..|+|++|+.+|+++...++..+.......++..+..|+...|+.
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence 45788899999998888777777788889999999999999999999999998888887778888889999999999998
Q ss_pred hHHHHHHHHHc
Q 040980 522 RDFVEYSLEMA 532 (1193)
Q Consensus 522 ~~~v~~~leLl 532 (1193)
+.-+.+.-+.+
T Consensus 146 ~~A~~~~~~a~ 156 (164)
T 3ro3_A 146 DQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666554433
No 18
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=94.94 E-value=0.044 Score=52.57 Aligned_cols=72 Identities=8% Similarity=0.025 Sum_probs=64.1
Q ss_pred CCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEEC
Q 040980 1066 SPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1066 ~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL 1137 (1193)
.++.+.+++|-.+.-|+-|.++..|.|.-..-+.+.+.|+.++.|-.....+.+..|-++++..+.|.+.|+
T Consensus 6 k~~~~~l~lPysv~rgE~~~~~~~V~nyl~~~~~v~v~L~~s~~~~~~~~~~~t~Clc~~~~~t~~W~i~~l 77 (118)
T 3es6_B 6 KIIIKNFDIPKSVRPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTN 77 (118)
T ss_dssp CCCEECCCCCSEECSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCSGGGCEEEEEECSSSCEEEEEEECCS
T ss_pred ceEEEEeeCCceEecCCEEEEEEEEEecccceEEEEEEecCCcCEEccCCCcccEEecCCCceEEEEEEEeC
Confidence 456778899999999999999999999999999999999999988666555667789999999999999886
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.55 E-value=0.32 Score=49.16 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHK-ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~-~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...++.+.+|++.+...+ ...........+|..|+..|+|++|+.+|+++....+..+.......++..+..|+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 457889999999999887 4457778889999999999999999999999998888888888888888999999999999
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.++-+.+.-+.+.
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655553
No 20
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.33 E-value=0.21 Score=55.41 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.++.+.+|++.|...+..+........||..|.. |+|++|+.+|++++..++..+-......++..+..++..+|+.++
T Consensus 95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 5788999999999888888888888899999998 999999999999999999988888888899999999999999988
Q ss_pred HHHHHHHHcc
Q 040980 524 FVEYSLEMAA 533 (1193)
Q Consensus 524 ~v~~~leLls 533 (1193)
-+.+.-+.+.
T Consensus 174 A~~~~~~al~ 183 (307)
T 2ifu_A 174 AAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 21
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.08 E-value=0.37 Score=52.94 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFAL-DDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~-gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...++.+.+|++.+...+...........+|..|... |+|++|+.+|++++..++..+.......++..+..++..+|+
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 3478899999999999888888888889999999995 999999999999999999888877777888999999999999
Q ss_pred hhHHHHHHHHHccC
Q 040980 521 VRDFVEYSLEMAAL 534 (1193)
Q Consensus 521 ~~~~v~~~leLls~ 534 (1193)
.++-+.+.-+.+..
T Consensus 174 ~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 174 YIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887777754
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.03 E-value=0.48 Score=47.75 Aligned_cols=91 Identities=5% Similarity=-0.163 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...++.+.+|++.+...+.......+...+|..|...|+|++|+.+|+++...+++.+ -......++..+..++..+|+
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC
Confidence 4578899999999999888878888899999999999999999999999999988887 444667788889999999999
Q ss_pred hhHHHHHHHHHc
Q 040980 521 VRDFVEYSLEMA 532 (1193)
Q Consensus 521 ~~~~v~~~leLl 532 (1193)
.++-+.+.-+.+
T Consensus 123 ~~~A~~~~~~al 134 (203)
T 3gw4_A 123 LAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766665544
No 23
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=93.88 E-value=0.16 Score=65.79 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=81.4
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCC-ceEEEEEEEEeCCCeEEeccC----CCcEEeCCCCeEEEEEEEEECcc
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTK-LLQEVKFCVADAQSFVLSGVH----NDTVFVLPKSKHILCYKVVPLGS 1139 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~-~~~~l~l~le~s~~F~fsG~k----~~~l~llP~s~~~~~~~l~PL~~ 1139 (1193)
..|+.|.+.+|-+++.|+.+.+...|.|.+. ..+++.+.|+.+++|-..|.. +.++.|.|+++..+.|.+.|...
T Consensus 78 ~kp~~v~~~LP~~v~~GD~~~i~~~v~N~~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~i~~~~~ 157 (915)
T 2hr0_B 78 MQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKT 157 (915)
T ss_dssp CCSSEEEEECCSEEETTCCEEEEEEEEECCSSCCEEEEEEECCCTTEECSCCSSSCEEEEEEECTTEEEEEEEEEEECSC
T ss_pred eccEEEEccCCCEEecCcEEEEEEEEEcCCCCeeEEEEEEEecCCceEeecCCCCcceeEEEECCCCeEEEEEEEEECcc
Confidence 4578899999999999999999999999999 999999999999888776542 35779999999999999999999
Q ss_pred cceecCeeEEEeccccccccCCCCccEEEEecCC
Q 040980 1140 GLLQLPKVTVISVRYSAEFQASNTASTVFVFPSK 1173 (1193)
Q Consensus 1140 G~~~LP~l~l~~~~~~~~~~~~~~~~~VfV~P~~ 1173 (1193)
|.+. ++|+.......+.. .....+=|.|.+
T Consensus 158 G~~~---i~v~a~~~~~~~~D-~v~~~l~V~p~~ 187 (915)
T 2hr0_B 158 GLQE---VEVKAAVYHHFISD-GVRKSLKVVPEG 187 (915)
T ss_dssp EEEE---EEEEEEESSSCCEE-EEEEEEEEECSC
T ss_pred ceEE---EEEEEEecCCCCCc-eEEEEEEEccCC
Confidence 9876 44444321111111 233557777766
No 24
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=93.74 E-value=0.11 Score=48.43 Aligned_cols=71 Identities=23% Similarity=0.133 Sum_probs=60.3
Q ss_pred EeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEECcccceec
Q 040980 1071 SLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPLGSGLLQL 1144 (1193)
Q Consensus 1071 ~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL~~G~~~L 1144 (1193)
.++++..+.+|+++.+++..+|+=+.. .++.+++|.+.= ..+ +...+ .|.|+++..+.+.++|..+|..+|
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL--~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L 81 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGL--QRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQL 81 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTT--EEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCC
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCC--Ccc-eEEEcCcCCCCCEEEEEEEEecCcccceEE
Confidence 556788899999999999999997766 889999998654 344 55667 899999999999999999999776
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.59 E-value=4.7 Score=43.39 Aligned_cols=80 Identities=11% Similarity=0.003 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ------EGWVTLLWEVLGYLRECS 515 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~------egW~~L~~~~L~~l~~Ca 515 (1193)
...+..+.+|++.... .......+|..|+..|++++|+.+|+++...... ++|......+...+..|+
T Consensus 223 ~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 223 QEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 3456666666664322 1234568899999999999999999999876655 445555677888899999
Q ss_pred HHcCChhHHHHH
Q 040980 516 RKQGIVRDFVEY 527 (1193)
Q Consensus 516 ~~l~~~~~~v~~ 527 (1193)
..+|+.+.-..+
T Consensus 297 ~~~g~~~~A~~~ 308 (327)
T 3cv0_A 297 NVMNRPDLVELT 308 (327)
T ss_dssp HHTTCHHHHHHH
T ss_pred HhcCCHHHHHHH
Confidence 999998765443
No 26
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=93.43 E-value=0.23 Score=67.66 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccC----CCcEEeCCCCeEEEEEEEEECccc
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVH----NDTVFVLPKSKHILCYKVVPLGSG 1140 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k----~~~l~llP~s~~~~~~~l~PL~~G 1140 (1193)
..|+.|.+.+|-.++-|+.|.+...|.|.++..+++.+.|..+++|-+.|.. +.++.|.|+++..+.|.+.|+..|
T Consensus 811 ~kpffv~l~LPysv~rGEq~~l~v~VfNy~~~~~~V~V~L~~s~~~~~~~~~~~~~~q~v~v~a~~~~~v~f~i~p~~~G 890 (1642)
T 3prx_B 811 MKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQG 890 (1642)
T ss_dssp CCSEEEECCCCSCEETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSSCCEEEEEECSSEEEEEEEEEEECSCE
T ss_pred ECCEEEEccCCCEEecCCEEEEEEEEEcCCCCcEEEEEEEEcCCCeEeeccCCCcceeEEEECCCCeEEEEEEEEEeecc
Confidence 3478889999999999999999999999999999999999999998887632 356799999999999999999999
Q ss_pred ceec
Q 040980 1141 LLQL 1144 (1193)
Q Consensus 1141 ~~~L 1144 (1193)
.+.+
T Consensus 891 ~~~i 894 (1642)
T 3prx_B 891 LHDV 894 (1642)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 8763
No 27
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=93.33 E-value=0.12 Score=65.62 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=72.5
Q ss_pred cCCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccC--CCcEEeCCCCeEEEEEEEEECcccc
Q 040980 1064 ELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVH--NDTVFVLPKSKHILCYKVVPLGSGL 1141 (1193)
Q Consensus 1064 ~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k--~~~l~llP~s~~~~~~~l~PL~~G~ 1141 (1193)
-..|+.|...+|-+++.|+.+.+...|.|.++..+++.+.|+.+++|-+.+.. ..++.|.|+++..+.|.+.|...|.
T Consensus 150 v~kpf~v~~~lP~~v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~a~~~~~v~f~i~~~~~G~ 229 (767)
T 4fxk_B 150 VFREFHLHLRLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAA 229 (767)
T ss_dssp CCCSEEEECCCCSCEETTCEEEECCEEEECSSSCEEEEEEECCCTTEECSSSSCCCEEEEECSSCEEECCEEEEECSCSE
T ss_pred EeccEEEecCCCCeeccCCEEEEEEEEEECCCCCEEEEEEEEecCCeEEecCCceeEEEEEcCCCeEEEEEEEEECccCc
Confidence 34689999999999999999999999999999999999999999998776544 4567999999999999999999998
Q ss_pred eec
Q 040980 1142 LQL 1144 (1193)
Q Consensus 1142 ~~L 1144 (1193)
+.+
T Consensus 230 ~~i 232 (767)
T 4fxk_B 230 VSL 232 (767)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=92.93 E-value=0.34 Score=66.75 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=80.6
Q ss_pred CCeEEEeecCCceeeCCeEEEEEEEEcCCC-ceEEEEEEEEeCCCeEEecc----CCCcEEeCCCCeEEEEEEEEECccc
Q 040980 1066 SPLVVSLECPPYAVLGEPFTYTIKIWNQTK-LLQEVKFCVADAQSFVLSGV----HNDTVFVLPKSKHILCYKVVPLGSG 1140 (1193)
Q Consensus 1066 ~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~-~~~~l~l~le~s~~F~fsG~----k~~~l~llP~s~~~~~~~l~PL~~G 1140 (1193)
.|+.|.+.+|-+++.|+.+.+...|.|.++ ..+++.+.|+.+++|-..|. .+.++.|.|+++..+.|.+.|+..|
T Consensus 826 kpf~v~~~LP~sv~~GD~~~i~~~V~N~~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G 905 (1661)
T 2b39_A 826 QDFFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKRHQQTITIPARSSVAVPYVIVPLKIG 905 (1661)
T ss_dssp CSEEEEEECCSCEESSCEEEEEEEEEECCTTCCEEEEEEECCCTTEECSSCSSCCCEEEEEECTTCEEEEEEEEEECSCE
T ss_pred eeEEEEecCCcEEEeCCEEEEEEEEEcCCCCccEEEEEEEcCCCCeEeecCCCCcceEEEEECCCCcEEEEEEEEEcccC
Confidence 588999999999999999999999999999 99999999999998876654 3457899999999999999999999
Q ss_pred ceecCeeEEEeccccccccCCCCccEEEEecCC
Q 040980 1141 LLQLPKVTVISVRYSAEFQASNTASTVFVFPSK 1173 (1193)
Q Consensus 1141 ~~~LP~l~l~~~~~~~~~~~~~~~~~VfV~P~~ 1173 (1193)
.+. ++|+.......+.. .....+=|.|.+
T Consensus 906 ~~~---i~v~a~~~~~~~~D-~v~~~L~V~p~g 934 (1661)
T 2b39_A 906 LHE---VEVKAAVYNHFISD-GVKKTLKVVPEG 934 (1661)
T ss_dssp EEE---EEEEEEESSSSSCE-EEEEEEEEECSS
T ss_pred eEE---EEEEEEecCCCCCc-eEEEEEEEecCC
Confidence 874 45544322111111 233456666655
No 29
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=92.79 E-value=0.31 Score=65.93 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=72.5
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEecc--CCCcEEeCCCCeEEEEEEEEECcccce
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGV--HNDTVFVLPKSKHILCYKVVPLGSGLL 1142 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~--k~~~l~llP~s~~~~~~~l~PL~~G~~ 1142 (1193)
..|+.|.+.+|-+++-|+.+.+...|.|.+...+++.+.|+.+++|-+.+. .+.++.|.|+++..+.|.+.|...|.+
T Consensus 766 ~kpf~v~~~LP~sv~rGE~~~l~~~V~N~~~~~~~v~V~l~~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~v~p~~~G~~ 845 (1451)
T 4acq_A 766 FQPFFVELTMPYSVIRGEAFTLKATVLNYLPKCIRVSVQLEASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPKSLGNV 845 (1451)
T ss_dssp BCSEEEEEECCSEEESSSCEEEEEEEEECSSSCEEEEEEECCCTTEEEEESCSCCCCEEECTTEEEEEEEEEEECSCEEE
T ss_pred ECCEEEEccCCceEecCCEEEEEEEEEeccCccEEEEEEEEcCCCeEeecCCCCceEEEECCCCeEEEEEEEEECccceE
Confidence 458889999999999999999999999999999999999999999888764 356889999999999999999999987
Q ss_pred ec
Q 040980 1143 QL 1144 (1193)
Q Consensus 1143 ~L 1144 (1193)
.+
T Consensus 846 ~i 847 (1451)
T 4acq_A 846 NF 847 (1451)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=92.45 E-value=7.8 Score=39.92 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=51.3
Q ss_pred hhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Q 040980 219 IRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQ 298 (1193)
Q Consensus 219 vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~ 298 (1193)
....+.+|....-.++.+.|+++|+.|.+.-.+..+ .+.. .-.+.+.+..+++..|+..+|+..|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 104 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA---------DYKV----ISKSFARIGNAYHKLGDLKKTIEYYQK 104 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------CHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc---------chHH----HHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345577888888899999999999999886543211 1211 123445677788899999999999988
Q ss_pred HHHH
Q 040980 299 HNAS 302 (1193)
Q Consensus 299 Hi~~ 302 (1193)
=+..
T Consensus 105 a~~~ 108 (258)
T 3uq3_A 105 SLTE 108 (258)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 31
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.35 E-value=7.9 Score=40.14 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+|..|+..|+|++|+..|+.+...|-... .....+..+..|+.++|+.++.+..--.+..
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 5789999999999999999999998886642 3446788899999999999988776555553
No 32
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.23 E-value=1.1 Score=49.22 Aligned_cols=92 Identities=7% Similarity=-0.130 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ-GI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l-~~ 520 (1193)
..-++.+.+|++.+...+...........+|..|...|+|++|+.+|++++..|+..|........+..+..++... |+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~ 133 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 45788889999988888877777788889999999999999999999999999999888888888888999999995 99
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.+.-+.+.-+.+.
T Consensus 134 ~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 134 YAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655553
No 33
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=91.53 E-value=11 Score=41.93 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLW 505 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~ 505 (1193)
...++++.++++.....+.......+...+|..|...|++++|...|+.+....+..|+.....
T Consensus 270 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~ 333 (373)
T 1hz4_A 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 333 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4578888999988888776656666888999999999999999999999988888777665443
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.43 E-value=20 Score=39.56 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.+|++..... ..+...+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.
T Consensus 230 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHCCCH
Confidence 34566666666653322 3356788999999999999999999987664433 35566778889999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877776666554
No 35
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.28 E-value=1.3 Score=50.16 Aligned_cols=89 Identities=20% Similarity=0.032 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHH
Q 040980 445 LGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDF 524 (1193)
Q Consensus 445 i~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~ 524 (1193)
++.+.+|++.++..+..+....+...||..|+..|++++|+.+|+++...++..+-... ..++..+..|+.++|+.+..
T Consensus 202 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHH
Confidence 44555555555555566666666666777777777777777777777766666666666 66666666777777776666
Q ss_pred HHHHHHHccC
Q 040980 525 VEYSLEMAAL 534 (1193)
Q Consensus 525 v~~~leLls~ 534 (1193)
+.+.-+.+..
T Consensus 281 ~~~~~~al~~ 290 (378)
T 3q15_A 281 FQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 36
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.25 E-value=1.1 Score=48.81 Aligned_cols=92 Identities=10% Similarity=-0.104 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE-GWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e-gW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...+..+.+|++.....+.......+...||..|+..|+|++|+.+|+++...++.- +-......++..+..|+.++|+
T Consensus 132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 446788888888655544444455677899999999999999999999999888765 5666777889999999999999
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
-+..+.+.-+.+.
T Consensus 212 y~~A~~~~~~al~ 224 (293)
T 3u3w_A 212 YEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9887777666553
No 37
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.07 E-value=1.2 Score=48.68 Aligned_cols=86 Identities=8% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...+..+.+|++.+... +.......+...+|..|+..|+|++|+.+|+++....+..+-......++..+-.|+..+|+
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 45788899999988877 55566667889999999999999999999999988887777777778889999999999995
Q ss_pred h-hHHHHH
Q 040980 521 V-RDFVEY 527 (1193)
Q Consensus 521 ~-~~~v~~ 527 (1193)
. +..+.+
T Consensus 252 ~~~~A~~~ 259 (293)
T 3u3w_A 252 EEAEIEDA 259 (293)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 3 444433
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.98 E-value=1.1 Score=48.84 Aligned_cols=83 Identities=8% Similarity=0.041 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHKAR-RMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~-R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...+..+.+|++.+...+.. .....+...+|..|+..|+|++|+.+|+++.......+-......+...+..|+..+|+
T Consensus 172 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 34788899999887776543 33337788999999999999999999999987777666666677888899999999998
Q ss_pred hhHH
Q 040980 521 VRDF 524 (1193)
Q Consensus 521 ~~~~ 524 (1193)
.+.-
T Consensus 252 ~~~A 255 (293)
T 2qfc_A 252 EEAE 255 (293)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 7655
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.82 E-value=0.84 Score=44.72 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=54.0
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
+.+|++.|++. ....-.....+.+|..|+..|+|++|+.+|++++..-... ......+-.|+..+|+.+.-+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHH
Confidence 35666666664 2233334445688999999999999999999887654332 2445567778888888887777
Q ss_pred HHHHHcc
Q 040980 527 YSLEMAA 533 (1193)
Q Consensus 527 ~~leLls 533 (1193)
..-+.+.
T Consensus 87 ~~~~al~ 93 (150)
T 4ga2_A 87 CYRRSVE 93 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.77 E-value=1.5 Score=40.51 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.++++.+... .......+.+|..|+..|+|++|+.+|+++...+....+ ....+..+..|+..+|+.
T Consensus 19 ~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 19 DDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp HHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHcCCH
Confidence 34566777777665432 334466778999999999999999999999887655433 345667788999999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+.-+.+.-+++.
T Consensus 93 ~~A~~~~~~~~~ 104 (129)
T 2xev_A 93 TEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988887777664
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.71 E-value=8.1 Score=41.57 Aligned_cols=86 Identities=8% Similarity=-0.092 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhhcCcch---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Q 040980 442 YEILGLLKKSCESYGNHKARR---MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R---~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l 518 (1193)
...+..+.+|++.+...+... ....+...+|..|...|++++|+.+|+++....... ..++..+..|+..+
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 283 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHh
Confidence 456778888888876644321 123466789999999999999999999998765443 34556688899999
Q ss_pred CChhHHHHHHHHHcc
Q 040980 519 GIVRDFVEYSLEMAA 533 (1193)
Q Consensus 519 ~~~~~~v~~~leLls 533 (1193)
|+.++-+.+.-+.+.
T Consensus 284 g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 284 GNFENAVDYFHTALG 298 (330)
T ss_dssp TCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHc
Confidence 999988887776664
No 42
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.62 E-value=0.62 Score=42.89 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 463 MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 463 ~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
|...-.+.||..+|..|+|+.|+..|+.+...+..+. +..-...++..|..|++++|+.+.-+.+--+++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445568999999999999999999999998886553 3334557788899999999999988887777664
No 43
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=90.46 E-value=3 Score=51.01 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=78.1
Q ss_pred CccccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE--EeCCCCeEEEEEEEEE
Q 040980 1060 DVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV--FVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1060 ~v~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l--~llP~s~~~~~~~l~P 1136 (1193)
.+.+..++|. +++|..+.+|+++.+++..+|+=+.+ .++.+++|.+.= ..+ +...+ .|.|+++..+.+.++|
T Consensus 579 di~l~~P~l~--I~v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG~GL--~~~-~~~~~~~~v~Pg~~~~~~~~~~P 653 (695)
T 1g0d_A 579 NIPLSTPELL--VQVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAGL--LSA-TQIHVNGAVAPSGKVSVKLSFSP 653 (695)
T ss_dssp EEECBCCCCE--EECCSCEETTCCEEEEEEEECCSSSCEESCEEEEEETTT--EEE-EEEECSSEECTTCEEEEEEEECC
T ss_pred EEEEcCCCEE--EEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCC--Ccc-eEEecCCCcCCCCEEEEEEEEEc
Confidence 4446677774 46888999999999999999997766 779999997654 233 55556 7999999999999999
Q ss_pred CcccceecCeeEEEeccccccccCCCCccEEEEecCCCccc
Q 040980 1137 LGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFK 1177 (1193)
Q Consensus 1137 L~~G~~~LP~l~l~~~~~~~~~~~~~~~~~VfV~P~~~~~~ 1177 (1193)
..+|..+|= ..+.+ ..+..-.....|.|.|..|-+.
T Consensus 654 ~~~G~r~L~-a~f~s----~~l~~v~G~~~v~V~~~~~~~~ 689 (695)
T 1g0d_A 654 MRTGVRKLL-VDFDS----DRLKDVKGVTTVVVHKKYRSLI 689 (695)
T ss_dssp SSCEEEEEE-EEEEC----SSCCCEEEEEEEEEECC-----
T ss_pred CCccceEEE-EEEEC----CcccCcEeEEEEEEeecccchh
Confidence 999998752 22233 3344445568899999877554
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.37 E-value=10 Score=39.24 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+..+.+|++..... ......+|..|+..|++++|+.+|+.+....... ...+..+..|+...|+.+
T Consensus 159 ~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 159 QAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHccCHH
Confidence 4556666666543221 3455789999999999999999999986543322 244566788888999988
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
....+.-+++.
T Consensus 227 ~A~~~~~~~~~ 237 (252)
T 2ho1_A 227 TAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87776666654
No 45
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=90.27 E-value=0.95 Score=61.02 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCC-CeEEeccC------CCcEEeCCCCeEEEEEEEEEC
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQ-SFVLSGVH------NDTVFVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~-~F~fsG~k------~~~l~llP~s~~~~~~~l~PL 1137 (1193)
..|+.|.+.+|-+++.|+.+.+...|.|.+...+++.+.|+.++ .+-|.|.. ..++.|.++++..+.|.+.|.
T Consensus 663 ~kp~~v~~~lP~~v~~Gd~~~l~~~v~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~v~f~i~~~ 742 (1325)
T 2pn5_A 663 VQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKAR 742 (1325)
T ss_dssp CCSEEEEEECCSEEETTCEEEEEEEEEECSSSCEEEEEEEECGGGCEEETTSCTTCCEEEEEEEECTTCCEEEEEEEEEC
T ss_pred eeeEEEEcCCCcEEEcCCEEEEEEEEEeCCCCcEEEEEEEeecCCceEEeccCCCCCcceEEEEECCCCeEEEEEEEEEc
Confidence 35889999999999999999999999999999999999998764 57777652 345899999999999999999
Q ss_pred ccccee
Q 040980 1138 GSGLLQ 1143 (1193)
Q Consensus 1138 ~~G~~~ 1143 (1193)
..|.+.
T Consensus 743 ~~G~~~ 748 (1325)
T 2pn5_A 743 KLGEMA 748 (1325)
T ss_dssp SSEEEE
T ss_pred ccceEE
Confidence 888653
No 46
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.50 E-value=7.2 Score=42.97 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-----WVTLLWEVLGYLRECSR 516 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-----W~~L~~~~L~~l~~Ca~ 516 (1193)
...+..+.+|++.... .......+|..|+..|+|++|+.+|+++.......+ -......+...+..|+.
T Consensus 268 ~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 268 EEAVAAYRRALELQPG------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 3456666777665321 124567899999999999999999999987665431 01112456667888999
Q ss_pred HcCChhHHHHHH
Q 040980 517 KQGIVRDFVEYS 528 (1193)
Q Consensus 517 ~l~~~~~~v~~~ 528 (1193)
.+|+.++...+.
T Consensus 342 ~~g~~~~A~~~~ 353 (368)
T 1fch_A 342 MLGQSDAYGAAD 353 (368)
T ss_dssp HHTCGGGHHHHH
T ss_pred HhCChHhHHHhH
Confidence 999988765543
No 47
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.34 E-value=0.76 Score=42.60 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.......+|..|+..|+|++|+.+|+++...+... ..++..+..|+..+|+.++-+.+.-+.+.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567899999999999999999999998776554 45667789999999999988887777664
No 48
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=88.65 E-value=0.68 Score=44.23 Aligned_cols=74 Identities=8% Similarity=0.010 Sum_probs=62.9
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECc
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLG 1138 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~ 1138 (1193)
..|+-+.+.+|..+.-|+-|+++..|.|.-..=+.+.+.|+.|+.|-+....+.+--|-.+.++.+.|.+.|..
T Consensus 5 ~qPffveltlPySv~rgE~f~lkatVfNyL~~Ci~V~v~L~~S~~~~~~~~~~~s~ClC~~~~ktf~W~v~~~~ 78 (118)
T 2icn_B 5 RKIIIKNFDIPKSVRPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTNR 78 (118)
T ss_dssp CCCSEECCCCCSEECSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCGGGGCEEEEEECSSSCEEEEEEECCSS
T ss_pred cCCEEEEEeCCCcccCCCEEEEEEEEEeccCcCEEEEEEEcCCCCeEeecCCcCCEEECCCCCEEEEEEEEECc
Confidence 45788888999999999999999999999999999999999998866543334445777788999999999984
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.06 E-value=32 Score=37.06 Aligned_cols=85 Identities=5% Similarity=-0.096 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.++++.... .......+...+|..|+..|++++|+.+|+.+....... ..++..+..|+..+|+.
T Consensus 251 ~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 251 TDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN------VNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCH
Confidence 3456677777765543 223444556789999999999999999999998764433 34666788899999999
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+.+.-+.+..
T Consensus 323 ~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 323 DEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9888887777754
No 50
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.70 E-value=4.7 Score=36.55 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHcCC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE-GWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e-gW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
...+.++.+|++..... ..+...+|..|+..|+|++|+.+|+++....... .-+.....++..+..|+..+|+
T Consensus 21 ~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 94 (131)
T 1elr_A 21 DTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94 (131)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 34667777777654321 3456789999999999999999999998776542 3344446777888999999999
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.+.-+.+.-+.+.
T Consensus 95 ~~~A~~~~~~~~~ 107 (131)
T 1elr_A 95 YKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888877766664
No 51
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=87.47 E-value=2.5 Score=46.02 Aligned_cols=91 Identities=10% Similarity=-0.101 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..+..+.+|++.............+...+|..|+..|+|++|+.+|+++...+...+ ...+...++..+..|+..+|+.
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 456777777766655444444566788999999999999999999999987776543 3334447888899999999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 213 ~~Al~~~~kal~ 224 (293)
T 2qfc_A 213 EESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777666553
No 52
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=87.41 E-value=0.38 Score=66.31 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccC-----------CCcEEeCCCCeEEEEEEE
Q 040980 1066 SPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVH-----------NDTVFVLPKSKHILCYKV 1134 (1193)
Q Consensus 1066 ~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k-----------~~~l~llP~s~~~~~~~l 1134 (1193)
.|+.|.+.+|-+++.|+.+.+...|.|.+...+++.+.|+.+++|-+.|.. +.++.|.|+++..+.|.+
T Consensus 821 kpf~v~~~LP~~v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i 900 (1676)
T 3cu7_A 821 KDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSSHLVTFTV 900 (1676)
T ss_dssp CSEEEEEECCSCEETTCCEEEEEEEEECSSSCBCCCCEECCCTTEECSSCC----------CCCCCCBCTTEEEECCEEE
T ss_pred eeEEEEccCCcEEEECcEEEEEEEEEcCCCCcEEEEEEEecCCCeEEeccccccccccccceeEEEEECCCCeEEEEEEE
Confidence 688999999999999999999999999999999999999999888876643 357899999999999999
Q ss_pred EECcccceec
Q 040980 1135 VPLGSGLLQL 1144 (1193)
Q Consensus 1135 ~PL~~G~~~L 1144 (1193)
.|+..|.+.+
T Consensus 901 ~p~~~G~~~i 910 (1676)
T 3cu7_A 901 LPLEIGLHNI 910 (1676)
T ss_dssp EECSSSCCCE
T ss_pred EEcccCcEEE
Confidence 9999998643
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.23 E-value=27 Score=36.30 Aligned_cols=86 Identities=15% Similarity=-0.078 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDD---FNNAKQLFDGVANQYRQEGW--VTLLWEVLGYLRECSR 516 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd---~~~Al~~l~~~~~~Yr~egW--~~L~~~~L~~l~~Ca~ 516 (1193)
...++.+.+|++..... ......+|..|+..|+ +++|+.+|+++.......+- ......+...+..|+.
T Consensus 159 ~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 44566677776654433 2445567888888898 99999999999877743322 3455577788899999
Q ss_pred HcCChhHHHHHHHHHcc
Q 040980 517 KQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 517 ~l~~~~~~v~~~leLls 533 (1193)
..|+.+.-+.+.-+.+.
T Consensus 233 ~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 233 INRDKVKADAAWKNILA 249 (272)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999988887777664
No 54
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=87.21 E-value=35 Score=40.41 Aligned_cols=87 Identities=8% Similarity=-0.060 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 441 TYEILGLLKKSCESYGNHKAR-RMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~-R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
-...++++.+|++.+...+.. .....+...+|..|...|++++|+.+|+++....... ..+...+..|+...|
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND------ANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhC
Confidence 345678888888877654322 2225567789999999999999999999987654322 255666788999999
Q ss_pred ChhHHHHHHHHHcc
Q 040980 520 IVRDFVEYSLEMAA 533 (1193)
Q Consensus 520 ~~~~~v~~~leLls 533 (1193)
+.++-+.+.-+++.
T Consensus 565 ~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 565 IPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99888777766664
No 55
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=87.12 E-value=3.7 Score=39.74 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=57.2
Q ss_pred ccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccc
Q 040980 1063 VELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGL 1141 (1193)
Q Consensus 1063 ~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~ 1141 (1193)
...+.|.+.+..|..+..|++.++++.|+|.-... -.+.+.+-.++. ..|.. .+.|.||++..+.|+..|..+|.
T Consensus 14 ~~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~--~v~t~--~v~La~G~s~tv~f~~~~~~~G~ 89 (127)
T 3idu_A 14 FEFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGT--LYKNW--TVSLGPKEEKVLTFNWTPTQEGM 89 (127)
T ss_dssp CSSCCEEEEEESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTE--EEEEE--EEEECTTCEEEEEEEECCSSCEE
T ss_pred ccCCCeEEEecCCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCE--EEeeE--EeccCCCCeEEEEEEEEcCCCcE
Confidence 44555666667899999999999999999997755 445555443333 22333 45799999999999999988886
Q ss_pred ee
Q 040980 1142 LQ 1143 (1193)
Q Consensus 1142 ~~ 1143 (1193)
..
T Consensus 90 ~~ 91 (127)
T 3idu_A 90 YR 91 (127)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 56
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.03 E-value=40 Score=38.73 Aligned_cols=77 Identities=6% Similarity=-0.038 Sum_probs=49.1
Q ss_pred hHHhHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 220 RYCFKVAVYAEF---RRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 220 R~~FK~a~~aEf---r~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
...+-.|...-. .++.+.|++.|+.+.+...+.+...+. . .+...--....+.+..+++..|+..+|+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE---D---EKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT---C---HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc---c---cccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 333445554443 679999999999998866554422211 1 1112222234456677788899999999999
Q ss_pred HHHHHH
Q 040980 297 HQHNAS 302 (1193)
Q Consensus 297 ~~Hi~~ 302 (1193)
++-+..
T Consensus 261 ~~~l~~ 266 (514)
T 2gw1_A 261 KKAIEL 266 (514)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987764
No 57
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=86.09 E-value=44 Score=36.63 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++...... ...+...+|..|...|+|++|+.+|+++....... ..++..+..|+...|+.
T Consensus 194 ~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRS 263 (365)
T ss_dssp HHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Confidence 345677777776543321 12355688999999999999999999998765443 34566778888999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 264 ~~A~~~~~~al~ 275 (365)
T 4eqf_A 264 EEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888777766654
No 58
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=85.78 E-value=5.3 Score=44.65 Aligned_cols=92 Identities=8% Similarity=-0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWV--TLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~--~L~~~~L~~l~~Ca~~l~ 519 (1193)
...++++.+|++.+...+...........+|..|+..|+|+.|+.+|+.+...+++.+.. .....++..+..++...|
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 70 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence 446788899999888888777777788899999999999999999999999888876554 445556667888889999
Q ss_pred ChhHHHHHHHHHcc
Q 040980 520 IVRDFVEYSLEMAA 533 (1193)
Q Consensus 520 ~~~~~v~~~leLls 533 (1193)
+.++-..+.-+.+.
T Consensus 150 ~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 150 RLDEAEASARSGIE 163 (373)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 98877776666553
No 59
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=85.59 E-value=19 Score=38.98 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
...+|..++..|++++|+.+|+++....... ......++..+..|+...|+.+.-+...-+.+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3466899999999999999999998766443 223445566788999999999888887777664
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=85.06 E-value=43 Score=38.41 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFA---LDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~---~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l 518 (1193)
...+..+.+|++.................+|..|+. .|++++|+.+|+++....... ..++..+..|+...
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS------EQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHh
Confidence 456778888887766655433334466788999999 999999999999987654332 24556788899999
Q ss_pred CChhHHHHHHHHHcc
Q 040980 519 GIVRDFVEYSLEMAA 533 (1193)
Q Consensus 519 ~~~~~~v~~~leLls 533 (1193)
|+.++.+.+.-+.+.
T Consensus 463 g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 463 EDIDEAITLFEESAD 477 (514)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999887777666664
No 61
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=84.40 E-value=51 Score=38.14 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=42.1
Q ss_pred hCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 040980 233 RDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNAS 302 (1193)
Q Consensus 233 ~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~~ 302 (1193)
.+...|.+.|+.|...+.+++...+. -.++........+.+..+++..|+..+|+..|++-+..
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTV------DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CC------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCC------cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 46667777777777777766655432 13333333334556677888999999999999987664
No 62
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=84.35 E-value=48 Score=37.37 Aligned_cols=85 Identities=5% Similarity=-0.104 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++.... .......+...+|..|...|++++|+.+|+++....... ..++..+..|+...|+.
T Consensus 274 ~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 274 TDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhcCH
Confidence 3456666666664322 233445677889999999999999999999987654332 24556678888899998
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
+.-+...-+++..
T Consensus 346 ~~A~~~~~~al~~ 358 (450)
T 2y4t_A 346 DEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8888777777653
No 63
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=84.28 E-value=1.7 Score=53.63 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=74.2
Q ss_pred ccccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEECc
Q 040980 1061 VEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPLG 1138 (1193)
Q Consensus 1061 v~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL~ 1138 (1193)
+.+..+.|.| ++|..+.+|+++.+++.++|+=+.+ .++.+++|.+.= .-+ +...+ .|.|+++..+.+.++|..
T Consensus 625 i~l~~P~l~I--~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL--~~~-~~~~~~~v~pg~~~~~~~~~~P~~ 699 (731)
T 1ex0_A 625 TVLTIPEIII--KVRGTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGV--TRP-MKKMFREIRPNSTVQWEEVCRPWV 699 (731)
T ss_dssp EECBCCCCEE--EEEECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTT--EEE-EEEEEEEECTTCEEEEEEEECCSS
T ss_pred EEEeCCCEEE--EeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCC--Cce-eeEecCccCCCCEEEEEEEEEecc
Confidence 3456667655 5667789999999999999997766 889999998654 234 55677 999999999999999999
Q ss_pred ccceecCeeEEEeccccccccCCCCccEEEEec
Q 040980 1139 SGLLQLPKVTVISVRYSAEFQASNTASTVFVFP 1171 (1193)
Q Consensus 1139 ~G~~~LP~l~l~~~~~~~~~~~~~~~~~VfV~P 1171 (1193)
+|..+|= ..+.+. .+..-.....|.|.|
T Consensus 700 ~G~r~L~-a~f~s~----~l~~v~G~~~v~V~~ 727 (731)
T 1ex0_A 700 SGHRKLI-ASMSSD----SLRHVYGELDVQIQR 727 (731)
T ss_dssp CEEEEEE-EEEECS----SCCCEEEEEEEEEBC
T ss_pred ccceEEE-EEEECC----cccCcEeEEEEEEcc
Confidence 9998752 222333 333334446677766
No 64
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=84.09 E-value=89 Score=38.43 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=102.8
Q ss_pred ceecCCCeEEEEEEEEcCCCceeEecEEEEEEec--CCccEEEEcCCccccccccCCcccccCCCCceEeecCCeEEEEE
Q 040980 618 QIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQ--SECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTY 695 (1193)
Q Consensus 618 ~~~~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~l~p~~~~~~~~ 695 (1193)
.....|+.+.+.|.+++.....- .+.+.++. -.|+-+.... ...++..+.|.|++.+.+.+
T Consensus 490 ~~~~~G~df~v~l~~~N~s~~~~---~v~~~l~a~~v~YtG~~~~~--------------~~~~~~~v~L~p~~~~~i~~ 552 (692)
T 1vjj_A 490 GMLAVGKEVNLVLLLKNLSRDTK---TVTVNMTAWTIIYNGTLVHE--------------VWKDSATMSLDPEEEAEHPI 552 (692)
T ss_dssp SCCBTTSCEEEEEEEEECSSSCE---EEEEEEEEEEECTTCCEEEE--------------EEEEEEEEEECTTCEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCE---EEEEEEEEEEEeeCCccccc--------------eEEeeEEEEECCCceEEEEE
Confidence 55668999999999998776552 23333322 1222111100 00112358899999888888
Q ss_pred EEeec-------cceEEEEEEEEEEeCCcccccccCCCCccccccccccccccccCCCCCCcccccccccceeeeCCCCc
Q 040980 696 EIKSE-------QSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQ 768 (1193)
Q Consensus 696 ~~~~~-------~~g~~~v~~V~l~lg~~~~~~~~~e~~~~~~~~~~W~~~~~~~~~~~~~~~~~is~~~~~~I~~~~p~ 768 (1193)
.+... +.+.+++.. .+.+... -. |.-+ . .|.=..|.
T Consensus 553 ~i~y~~Y~~~L~d~~~i~~~a-~~~v~et---------------~~-~~~~------------------~--di~l~~P~ 595 (692)
T 1vjj_A 553 KISYAQYERYLKSDNMIRITA-VCKVPDE---------------SE-VVVE------------------R--DIILDNPT 595 (692)
T ss_dssp EECHHHHHTTCCTTCEEEEEE-EEECTTS---------------CC-EEEE------------------E--EEECBCCC
T ss_pred EECHHHHhhhcccCCeEEEEE-EEEECCC---------------ce-EEEE------------------E--EEEEcCCC
Confidence 87522 223343332 2222210 00 1111 0 12223566
Q ss_pred eEEEcCCCCCeeeccEEEEEEEEeeCCccc-ccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCc
Q 040980 769 VDVDLGASGPALVGESFMIPVTVASRGHDI-YSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPG 847 (1193)
Q Consensus 769 v~v~~~~~~paL~gE~~~i~i~V~n~~~~~-~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~ 847 (1193)
++|++. +.+.+|+...+.|+.+|.=... ..+.+.+ .|.||..+
T Consensus 596 l~I~v~--g~~~v~~~l~v~v~f~NPL~~~L~~c~~~v-----EG~GL~~~----------------------------- 639 (692)
T 1vjj_A 596 LTLEVL--NEARVRKPVNVQMLFSNPLDEPVRDCVLMV-----EGSGLLLG----------------------------- 639 (692)
T ss_dssp EEEEEC--SCCBTTSCEEEEEEEECCSSSCBCSEEEEE-----ECTTTSSS-----------------------------
T ss_pred EEEEeC--CCcccCCeEEEEEEEECCCCCcccceEEEE-----ECCCCCCC-----------------------------
Confidence 666665 6678999999999999985432 2222222 24455411
Q ss_pred hhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEec
Q 040980 848 EIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYS 893 (1193)
Q Consensus 848 ~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~ 893 (1193)
++ .+.++++.||++....+.+.-.+.|.+.|.+.++-.
T Consensus 640 ---~~-----~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~ 677 (692)
T 1vjj_A 640 ---NL-----KIDVPTLGPKERSRVRFDILPSRSGTKQLLADFSCN 677 (692)
T ss_dssp ---CE-----EEEECCBCTTCEEEEEEEECCCSCEEEEEEEEEECS
T ss_pred ---ce-----EEEcCccCCCCEEEEEEEEEeccccceEEEEEEECC
Confidence 00 145577889999998888888899999999999765
No 65
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=84.06 E-value=4.1 Score=35.83 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc-CC
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ-GI 520 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l-~~ 520 (1193)
...+.++.+|++..... ......+|..|+..|+|++|+.+|+++...... .....+...+..|+..+ |+
T Consensus 23 ~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 23 TESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHHHHHhCC
Confidence 45667777777654322 234568999999999999999999998766443 11235667788999999 99
Q ss_pred hhHHHHHHHHHcc
Q 040980 521 VRDFVEYSLEMAA 533 (1193)
Q Consensus 521 ~~~~v~~~leLls 533 (1193)
.++.+.+.-+++.
T Consensus 93 ~~~A~~~~~~~~~ 105 (112)
T 2kck_A 93 EVEAEIAEARAKL 105 (112)
T ss_dssp SHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhh
Confidence 9988887777764
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=83.79 E-value=31 Score=40.44 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=47.8
Q ss_pred hhhhHHhHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDW-VEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITW 295 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~-~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q 295 (1193)
-..+..+.+|......++. +.|+++|+.|.+.= +. ..++ .+.+-.+|+..|+..+|+..
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~---------~~~a-------~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PE---------LVEA-------WNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TT---------CHHH-------HHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CC---------CHHH-------HHHHHHHHHHcCCHHHHHHH
Confidence 5677888899988888999 99999999997641 11 1222 23445567777999999999
Q ss_pred HHHHHH
Q 040980 296 FHQHNA 301 (1193)
Q Consensus 296 ~~~Hi~ 301 (1193)
|++=+.
T Consensus 160 ~~~al~ 165 (474)
T 4abn_A 160 FSGALT 165 (474)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988554
No 67
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.68 E-value=11 Score=35.44 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
.-|+.+++|++..... ..+...+|..|+..|+|++|+.+|++++....... -+.....++..+-.|+..+|+.
T Consensus 26 ~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 26 KAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH
Confidence 4566666776653221 23456899999999999999999999987655432 2345567788889999999999
Q ss_pred hHHHHHHHHHc
Q 040980 522 RDFVEYSLEMA 532 (1193)
Q Consensus 522 ~~~v~~~leLl 532 (1193)
+.-+.+.-+.+
T Consensus 100 ~~A~~~~~kal 110 (127)
T 4gcn_A 100 SLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777655544
No 68
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=83.55 E-value=2.9 Score=37.25 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..-++.+.+|++..... ..+...+|..|+..|+|++|+.+|+++.......+-......++..+..|+..+|+.
T Consensus 21 ~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 21 REAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34667777777654332 345678999999999999999999999876655544444566777777788777743
No 69
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=83.54 E-value=7.2 Score=34.48 Aligned_cols=80 Identities=6% Similarity=-0.159 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+.++.+|++..... ......+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.
T Consensus 21 ~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 21 DDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------GKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhH
Confidence 34567777777654332 3456788999999999999999999988765432 24556778899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+..+.+.-+.+.
T Consensus 89 ~~A~~~~~~~~~ 100 (118)
T 1elw_A 89 EEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888887777664
No 70
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=83.52 E-value=1.1 Score=55.09 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=64.6
Q ss_pred CccccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEEC
Q 040980 1060 DVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPL 1137 (1193)
Q Consensus 1060 ~v~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL 1137 (1193)
.+.+..+.|. +++|..+.+|+++.+++.++|+=+.+ .++.+++|.+.= ..|.+...+ .|.|+++..+.+.++|.
T Consensus 588 di~l~~P~l~--I~v~g~~~v~~~l~v~v~f~NPL~~~L~~c~~~vEG~GL--~~~~~~~~~~~v~pg~~~~~~~~~~P~ 663 (692)
T 1vjj_A 588 DIILDNPTLT--LEVLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGL--LLGNLKIDVPTLGPKERSRVRFDILPS 663 (692)
T ss_dssp EEECBCCCEE--EEECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTT--SSSCEEEEECCBCTTCEEEEEEEECCC
T ss_pred EEEEcCCCEE--EEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCC--CCCceEEEcCccCCCCEEEEEEEEEec
Confidence 3345666764 46788899999999999999997665 789999997532 234445566 89999999999999999
Q ss_pred cccceec
Q 040980 1138 GSGLLQL 1144 (1193)
Q Consensus 1138 ~~G~~~L 1144 (1193)
.+|..+|
T Consensus 664 ~~G~r~L 670 (692)
T 1vjj_A 664 RSGTKQL 670 (692)
T ss_dssp SCEEEEE
T ss_pred cccceEE
Confidence 9999875
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.43 E-value=4 Score=37.37 Aligned_cols=79 Identities=6% Similarity=-0.123 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.+|++..... ..+...+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.+
T Consensus 34 ~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 34 QAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp HHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHHhhHH
Confidence 4566666666543322 4566789999999999999999999998765443 345667788999999998
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+.+.-+.+.
T Consensus 102 ~A~~~~~~~~~ 112 (133)
T 2lni_A 102 KAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777666654
No 72
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.05 E-value=4 Score=38.53 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..++|..|+..|+|++|+.+|++++...... ..++..+..|+.++|+.++-+..+-+.+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4579999999999999999999988664433 34566788999999999888887766654
No 73
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.78 E-value=6.6 Score=38.27 Aligned_cols=80 Identities=9% Similarity=-0.107 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.+|++..... ..+...+|..|+..|+|++|+.+|++++...... ...+..+..|+..+|+.
T Consensus 28 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------SKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCH
Confidence 34667777777654332 3566789999999999999999999998765432 35566788999999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 96 ~~A~~~~~~al~ 107 (164)
T 3sz7_A 96 KGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777666664
No 74
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=82.62 E-value=4.6 Score=36.74 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.+...+|..|+..|+|++|+.+|+++....... ......+..|+..+|+.++-+...-+.+.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466789999999999999999999988654432 23445678899999999887776666554
No 75
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=82.41 E-value=5 Score=35.62 Aligned_cols=63 Identities=10% Similarity=-0.053 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.....+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.++-+...-+.+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445689999999999999999999998765443 345667889999999999998888887754
No 76
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.38 E-value=5.7 Score=38.62 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhcCc------------chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKA------------RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLG 509 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~------------~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~ 509 (1193)
...++.+.+|++.+..... ......+...+|..|+..|+|++|+.++++++..-.. + ...+.
T Consensus 28 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--~----~~a~~ 101 (162)
T 3rkv_A 28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET--N----EKALF 101 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--C----HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--c----hHHHH
Confidence 3567777778777544211 2344567788999999999999999999999765322 2 34566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHccC
Q 040980 510 YLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 510 ~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.+..|+..+|+.++-+...-+.+.+
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7888999999999888877666643
No 77
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.34 E-value=7.1 Score=36.45 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+.++.+|++... .......+...+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.
T Consensus 45 ~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 45 GGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------VKALYRRSQALEKLGRL 115 (148)
T ss_dssp HHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------HHHHHHHHHHHHHcCCH
Confidence 345666666655322 222345677889999999999999999999988765433 34556788899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++.+.+.-+.+.
T Consensus 116 ~~A~~~~~~al~ 127 (148)
T 2dba_A 116 DQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766664
No 78
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.32 E-value=8.3 Score=34.72 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++..... ..+...+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.
T Consensus 29 ~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------SKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------HHHHHHHHHHHHHhCCH
Confidence 34667777777654322 3456789999999999999999999988764433 34556778899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+.-+.+.-+.+.
T Consensus 97 ~~A~~~~~~~~~ 108 (131)
T 2vyi_A 97 VEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 887777666554
No 79
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=82.22 E-value=3.9 Score=36.72 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|++|+.+|+++....... ......+..|+..+|+.++.+...-+.+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346789999999999999999999998765443 12555678899999998877766655553
No 80
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=82.14 E-value=8 Score=35.83 Aligned_cols=80 Identities=9% Similarity=-0.028 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+..+.+|++..... ..+...+|..|+..|+|++|+.+|+++....... ...+..+..|+..+|+.
T Consensus 26 ~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 26 PEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHHhhH
Confidence 34566777777664332 3466789999999999999999999998765442 34566788899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++.+.+.-+.+.
T Consensus 94 ~~A~~~~~~a~~ 105 (137)
T 3q49_B 94 DEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766664
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=81.93 E-value=4.5 Score=38.16 Aligned_cols=79 Identities=8% Similarity=-0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
.-++.+++|++.... -..+...+|..|+..|+|++|+..|+++...-... ......+..|+..+|+.+
T Consensus 31 ~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 31 TAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------IKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHCCCHH
Confidence 456666666654322 13456789999999999999999999987643222 234566788999999998
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+...-+.+.
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777766664
No 82
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=81.63 E-value=8.8 Score=35.28 Aligned_cols=80 Identities=6% Similarity=-0.180 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.+|++..... ..+...+|..|+..|+|++|+..|+++....... ...+..+..|+..+|+.
T Consensus 21 ~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhCH
Confidence 34566777777654332 3566789999999999999999999988654332 34566788899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+...-+.+.
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887776666654
No 83
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=81.23 E-value=1.5 Score=38.67 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-----------HHHhcCcHHHHHHHHH
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVAN-----------QYRQEGWVTLLWEVLG 509 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~-----------~Yr~egW~~L~~~~L~ 509 (1193)
...+|+||...|+|+.|+.||+.+.. .-++.+|..+..++-.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~ 67 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINV 67 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHH
Confidence 35799999999999999999999743 3466677776666543
No 84
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=81.06 E-value=86 Score=36.16 Aligned_cols=231 Identities=10% Similarity=0.060 Sum_probs=130.7
Q ss_pred hhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Q 040980 219 IRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQ 298 (1193)
Q Consensus 219 vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~ 298 (1193)
....+.+|.+....++++.|+++|+.+.+.- | . .+ ..+.+..+++..|+..+|+..|++
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----------~---~-~~-------~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH----------P---T-PN-------SYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------C---C-HH-------HHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----------C---C-ch-------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4456778888888999999999999987631 1 1 11 123456678888999999999988
Q ss_pred HHHHhhcccCCCcchhhhHHH---HHHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHH-
Q 040980 299 HNASYKKLVGAPEVVFLHWEW---LSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEK- 374 (1193)
Q Consensus 299 Hi~~~~~~~G~~e~~f~h~~W---~srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~R- 374 (1193)
-+....+. + ..+...++ ...+|.---+.++++.... ..++..|+..|..|....
T Consensus 302 ~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 302 AVDLNPEY---P-PTYYHRGQMYFILQDYKNAKEDFQKAQSLN------------------PENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHCTTC---H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCSHHHHHHHHHHHHTTC
T ss_pred HhccCCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCC
Confidence 76644221 1 11111221 1223333334444442100 023445555555443321
Q ss_pred ----HHHHHHHhhccccccccCCCCCCCCCceeeeccccccccCCcccCCCCChhhHhHhHhhhCcccccHHHHHHHHHH
Q 040980 375 ----RSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKK 450 (1193)
Q Consensus 375 ----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~~al~~~~~~~hs~~ii~LL~k 450 (1193)
.+.++.+... + |.........|. ..... ..-...+..+.+
T Consensus 360 ~~~A~~~~~~~~~~-------~--~~~~~~~~~l~~------------------------~~~~~---g~~~~A~~~~~~ 403 (537)
T 3fp2_A 360 FTESEAFFNETKLK-------F--PTLPEVPTFFAE------------------------ILTDR---GDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHH-------C--TTCTHHHHHHHH------------------------HHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------C--CCChHHHHHHHH------------------------HHHHh---CCHHHHHHHHHH
Confidence 1122222211 1 100000000110 01111 123456788888
Q ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 451 SCESYGNHKARRMGSFCGFQMAVEYFAL----------DDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 451 A~~~f~~~~~~R~~~~l~~~lA~ey~~~----------gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
|++.................+|..|... |++++|+.+|+++....... ..+...+..|+..+|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcc
Confidence 8887766554433333345677777877 99999999999988765433 1456778889999999
Q ss_pred hhHHHHHHHHHccC
Q 040980 521 VRDFVEYSLEMAAL 534 (1193)
Q Consensus 521 ~~~~v~~~leLls~ 534 (1193)
.++-+.+.-+.+..
T Consensus 478 ~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 478 IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 98877776666643
No 85
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=80.75 E-value=12 Score=33.38 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++..... ......+|..|+..|++++|+.+|+++....... ...+..+..|+...|+.
T Consensus 26 ~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 26 DEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCH
Confidence 44567777777653321 2456788999999999999999999987654333 24455678889999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+++.
T Consensus 94 ~~A~~~~~~~~~ 105 (125)
T 1na0_A 94 DEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777666654
No 86
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=80.63 E-value=52 Score=33.40 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Q 040980 221 YCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHN 300 (1193)
Q Consensus 221 ~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi 300 (1193)
-.+.+|...--.++++.|+++|+.|.+.- ... ...+.+..+++..|+..+|+..|++-+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-----KDI----------------TYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CCT----------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-----ccH----------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34668888888899999999999987642 110 133455667888999999999999977
Q ss_pred HHhh
Q 040980 301 ASYK 304 (1193)
Q Consensus 301 ~~~~ 304 (1193)
....
T Consensus 66 ~~~~ 69 (258)
T 3uq3_A 66 EQGR 69 (258)
T ss_dssp HHHH
T ss_pred HhCc
Confidence 6554
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.04 E-value=5.6 Score=37.51 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+.|..|+..|+|++|+.+|++++...... ..+...+..|+.++|+.++-+...-+.+.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 4478999999999999999999987654332 34556678899999999988887777664
No 88
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=79.96 E-value=6.4 Score=36.29 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
......+|..|+..|+|++|+.+|+++....... ..+...+..|+..+|+.++-+...-+.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999988765443 356677889999999999888877776653
No 89
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=79.67 E-value=4.4 Score=40.08 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
+...||..|+..|+|++|+.+|++++...... ...+..+..|+.++|+.++.+...-+++
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~ 66 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFV 66 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456666666666666666666655432221 2334445555556666555555444443
No 90
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=79.63 E-value=36 Score=38.84 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=57.8
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
..++..--+|++.-.+++.+.|+++|+.|.+...+..+.... | +... .-..+-.+|+..|+..+|+..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-~---~~~~-------~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-I---RSLV-------TWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-T---TTHH-------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-h---HHHH-------HHHHHHHHHHHcCChHHHHHHH
Confidence 446666679999999999999999999999887765433211 1 1111 1123445678889999999999
Q ss_pred HHHHHHhhcccCC
Q 040980 297 HQHNASYKKLVGA 309 (1193)
Q Consensus 297 ~~Hi~~~~~~~G~ 309 (1193)
++-+...+...+.
T Consensus 118 ~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 118 DKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHSCCS
T ss_pred HHHHHHhHhcccc
Confidence 9988877766553
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.52 E-value=8.4 Score=43.80 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+++......+.......+...+|..|+..|+|++|+.++..+.....+..=......++..+.+++..+|+.
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH
Confidence 45678888999999888888888889999999999999999999999998776655443345556777778888888887
Q ss_pred hHHHHH
Q 040980 522 RDFVEY 527 (1193)
Q Consensus 522 ~~~v~~ 527 (1193)
+.-..+
T Consensus 192 ~~A~~~ 197 (434)
T 4b4t_Q 192 AKSKAS 197 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 92
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.31 E-value=7.5 Score=33.02 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|++|+.+|+++....... ..++..+..|+...|+.++-+.+.-+.+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456688999999999999999999987654332 24556778899999998888777666654
No 93
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=79.04 E-value=8.5 Score=38.78 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhcCcc----------hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKAR----------RMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYL 511 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~----------R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l 511 (1193)
...+.++.+|++........ .+...+...+|..|+..|+|++|+.+|+++....... ...+..+
T Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l 128 (198)
T 2fbn_A 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN------VKALYKL 128 (198)
T ss_dssp HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc------HHHHHHH
Confidence 34566777777654443211 1224677889999999999999999999998764332 3456678
Q ss_pred HHHHHHcCChhHHHHHHHHHcc
Q 040980 512 RECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 512 ~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..|+..+|+.++-+.+.-+.+.
T Consensus 129 g~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 129 GVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 8899999999887776666554
No 94
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=78.98 E-value=5.6 Score=36.50 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.+.+|..++..|+|++|+.+|+.+...+....|. ...+..+..|+...|+.++-+...-+++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT---PNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678999999999999999999998877655433 35666788899999999988887777765
No 95
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=78.68 E-value=44 Score=41.72 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=41.1
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q 040980 222 CFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNA 301 (1193)
Q Consensus 222 ~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~Hi~ 301 (1193)
.+-+|....-+++++.|+++|+.|.+. -+ ...++ .+.+-.+|+..|+..+|+..|++=++
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l----~P---------~~~~a-------~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEV----FP---------EFAAA-------HSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CS---------CCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CC---------CCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455788877788999999999988653 11 12332 23344557778999999998887544
No 96
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=78.03 E-value=6 Score=38.46 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---------Cc---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE---------GW---VTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e---------gW---~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+.|..|+..|+|++|+.+|.+++..+... .| ......++..+..|+.++|+.+.-+..+-+.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345688999999999999999999987664321 01 234456777889999999999998888877775
Q ss_pred C
Q 040980 534 L 534 (1193)
Q Consensus 534 ~ 534 (1193)
+
T Consensus 92 ~ 92 (162)
T 3rkv_A 92 R 92 (162)
T ss_dssp H
T ss_pred c
Confidence 3
No 97
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=77.90 E-value=2 Score=52.85 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=63.1
Q ss_pred CccccCCCeEEEeecCCceeeCCeEEEEEEEEcCCCce-EEEEEEEEeCCCeEEeccCCCcE--EeCCCCeEEEEEEEEE
Q 040980 1060 DVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLL-QEVKFCVADAQSFVLSGVHNDTV--FVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1060 ~v~~~~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F~fsG~k~~~l--~llP~s~~~~~~~l~P 1136 (1193)
.+.+..+.|.| ++|..+.+|+++.+++.++|+=+.+ .++.+++|.+.= .-+.+...+ .|.|+++..+.+.++|
T Consensus 581 di~l~~P~l~I--~v~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL--~~~~~~~~~~~~v~pg~~~~~~~~~~P 656 (687)
T 2q3z_A 581 DLYLENPEIKI--RILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGL--TEEQKTVEIPDPVEAGEEVKVRMDLVP 656 (687)
T ss_dssp EEECBCCCCEE--EEESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTT--CSSCEEEEECSCBCTTCEEEEEEEECC
T ss_pred EEEEeCCCEEE--EeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCC--CCCceEEecCCCcCCCCEEEEEEEEEe
Confidence 34456677754 5677889999999999999997766 789999997532 233334455 6899999999999999
Q ss_pred Ccccceec
Q 040980 1137 LGSGLLQL 1144 (1193)
Q Consensus 1137 L~~G~~~L 1144 (1193)
..+|..+|
T Consensus 657 ~~~G~~~L 664 (687)
T 2q3z_A 657 LHMGLHKL 664 (687)
T ss_dssp CSSSCEEE
T ss_pred ccccceEE
Confidence 99999875
No 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=77.55 E-value=13 Score=35.39 Aligned_cols=80 Identities=6% Similarity=-0.056 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+..+.+|++..... ..+...+|..|+..|+|++|+.+|+++...+... ...+..+..|+..+|+.
T Consensus 30 ~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 30 ENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhccH
Confidence 34566666666653322 3456688999999999999999999988765433 24556678889999998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+.+.-+.+.
T Consensus 98 ~~A~~~~~~a~~ 109 (166)
T 1a17_A 98 RAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766664
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=77.52 E-value=6.2 Score=37.61 Aligned_cols=79 Identities=13% Similarity=-0.037 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.+|++..-.. ......+|..|+..|+|++|+.+|+++....... ......+..|+..+|+.+
T Consensus 36 ~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 36 DAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE------PRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHcCCHH
Confidence 3455555555432221 2345678999999999999999999998765443 134456788999999998
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+.+.-+.+.
T Consensus 104 ~A~~~~~~al~ 114 (142)
T 2xcb_A 104 GAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87766655553
No 100
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=77.19 E-value=1e+02 Score=38.21 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=56.9
Q ss_pred CCceEEEcCCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccC
Q 040980 766 DPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELG 845 (1193)
Q Consensus 766 ~p~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~ 845 (1193)
.|.++|++. +.+.+|+...+.|+.+|-=...-. +..|++ .|.||..
T Consensus 629 ~P~l~I~v~--g~~~v~~~l~v~vsf~NPL~~~L~-~c~~~v---EG~GL~~---------------------------- 674 (731)
T 1ex0_A 629 IPEIIIKVR--GTQVVGSDMTVTVQFTNPLKETLR-NVWVHL---DGPGVTR---------------------------- 674 (731)
T ss_dssp CCCCEEEEE--ECCBTTSCEEEEEEEECCSSSCEE-EEEEEE---EETTTEE----------------------------
T ss_pred CCCEEEEeC--CCcccCCeEEEEEEEECCCCCccc-ceEEEE---ECCCCCc----------------------------
Confidence 566677665 557889999999999998543211 122211 2344441
Q ss_pred CchhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEec
Q 040980 846 PGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYS 893 (1193)
Q Consensus 846 ~~~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~ 893 (1193)
.. .+.++++.||++....+.+.-.+.|.+.|.+.++-.
T Consensus 675 -----~~-----~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~ 712 (731)
T 1ex0_A 675 -----PM-----KKMFREIRPNSTVQWEEVCRPWVSGHRKLIASMSSD 712 (731)
T ss_dssp -----EE-----EEEEEEECTTCEEEEEEEECCSSCEEEEEEEEEECS
T ss_pred -----ee-----eEecCccCCCCEEEEEEEEEeccccceEEEEEEECC
Confidence 10 144566779999998888888899999999999664
No 101
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=76.94 E-value=63 Score=39.77 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCceEEEcCCCCCeeeccEEEEEEEEeeCCccc-ccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCcccc
Q 040980 766 DPQVDVDLGASGPALVGESFMIPVTVASRGHDI-YSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEEL 844 (1193)
Q Consensus 766 ~p~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~-~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~ 844 (1193)
.|.++|++. +.+.+|+...+.|+.+|-=... ..+.+.+ .|.||..+.
T Consensus 586 ~P~l~I~v~--g~~~v~~~~~v~v~f~NPL~~~L~~c~~~v-----EG~GL~~~~------------------------- 633 (687)
T 2q3z_A 586 NPEIKIRIL--GEPKQKRKLVAEVSLQNPLPVALEGCTFTV-----EGAGLTEEQ------------------------- 633 (687)
T ss_dssp CCCCEEEEE--SCCSSSSCEEEEEEEECCSSSCBCSEEEEE-----ECTTTCSSC-------------------------
T ss_pred CCCEEEEeC--CCcccCCeEEEEEEEECCCCCcccceEEEE-----ECCCCCCCc-------------------------
Confidence 565666665 5578899999999999885432 2223232 244554210
Q ss_pred CCchhhhhccccceeec-CCCCCCCeEEEEEEEEEeCCcceEEEEEEEec
Q 040980 845 GPGEIEKIQQSFGLVSI-PFLKSGESWSCKLEIKWHRPKPVMLFVSLGYS 893 (1193)
Q Consensus 845 ~~~~i~~l~~s~~~i~v-~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~ 893 (1193)
+ .+.+ +++.||++....+.+.-.+.|.+.|.+.++-.
T Consensus 634 -------~-----~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~ 671 (687)
T 2q3z_A 634 -------K-----TVEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESD 671 (687)
T ss_dssp -------E-----EEEECSCBCTTCEEEEEEEECCCSSSCEEEEEEEECS
T ss_pred -------e-----EEecCCCcCCCCEEEEEEEEEeccccceEEEEEEEcC
Confidence 0 1445 67889999998888888899999999999664
No 102
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=76.74 E-value=5.9 Score=46.39 Aligned_cols=91 Identities=10% Similarity=-0.075 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhhc-C-cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH-K-ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ--EGWVTLLWEVLGYLRECSRK 517 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~-~-~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~--egW~~L~~~~L~~l~~Ca~~ 517 (1193)
...++++.+|++.+.+. + ..-........||..|...|+|++|+.++++++..|++ ..........+..|..-+..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 45667777777666553 2 22345667788999999999999999999999887764 34666777888889999999
Q ss_pred cCChhHHHHHHHHHc
Q 040980 518 QGIVRDFVEYSLEMA 532 (1193)
Q Consensus 518 l~~~~~~v~~~leLl 532 (1193)
.|+.++.+.+.-+.+
T Consensus 384 ~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 384 QGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 998876665544443
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=76.28 E-value=9.7 Score=38.38 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG----------WVTLLWEVLGYL 511 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg----------W~~L~~~~L~~l 511 (1193)
...++.+.+|++..... ......+|..|+..|+|++|+.+|+++........ ...-...++..+
T Consensus 54 ~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 34567777777654321 24567899999999999999999999987655443 222234667778
Q ss_pred HHHHHHcCChhHHHHHHHHHccC
Q 040980 512 RECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 512 ~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
..|+..+|+.+..+...-+.+..
T Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHc
Confidence 89999999999888877777753
No 104
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=75.53 E-value=10 Score=38.91 Aligned_cols=86 Identities=7% Similarity=-0.092 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-WVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..+..+.+|++.... -......+|..|+..|+|++|+.+|+++...+.... +...+..+...+-.|+..+|+.
T Consensus 60 ~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 60 EAADYFDIAIKKNYN------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp HHHHHHHHHHHTTCS------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 455566666643221 345567899999999999999999999987765543 3334556777788999999999
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+...-+.+..
T Consensus 134 ~~A~~~~~~al~~ 146 (228)
T 4i17_A 134 EKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9988888887753
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=75.41 E-value=16 Score=32.81 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.+++...... ......+|..|+..|++++|+++|+.+....... ..+...+..|+...|+.+
T Consensus 53 ~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~ 120 (136)
T 2fo7_A 53 EAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYD 120 (136)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHH
Confidence 4556666666543221 2345678999999999999999999987654332 234556778888999988
Q ss_pred HHHHHHHHHc
Q 040980 523 DFVEYSLEMA 532 (1193)
Q Consensus 523 ~~v~~~leLl 532 (1193)
+.+.+.-+++
T Consensus 121 ~A~~~~~~~~ 130 (136)
T 2fo7_A 121 EAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665554
No 106
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=75.17 E-value=8.6 Score=37.41 Aligned_cols=64 Identities=11% Similarity=-0.077 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.......+|..|+..|+|++|+.+|++++...... ..++..+..|+..+|+.++-+...-+.+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556789999999999999999999998765443 35666788899999999888877777664
No 107
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=75.15 E-value=9.3 Score=35.35 Aligned_cols=63 Identities=6% Similarity=-0.104 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
......+|..|+..|+|++|+.+|+++....... ..+...+..|+..+|+.+.-+...-+.+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456789999999999999999999987765443 35667788999999998888777766664
No 108
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=75.10 E-value=18 Score=42.27 Aligned_cols=92 Identities=11% Similarity=-0.038 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhc-Cc-chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH-KA-RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ--EGWVTLLWEVLGYLRECSRK 517 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~-~~-~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~--egW~~L~~~~L~~l~~Ca~~ 517 (1193)
...++++.+|++...+. |- .-........||..|...|+|++|+.++++++..|.+ .....-....+..|..-+..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 45788899999888774 32 2345566778999999999999999999999877754 23566677778889999999
Q ss_pred cCChhHHHHHHHHHcc
Q 040980 518 QGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 518 l~~~~~~v~~~leLls 533 (1193)
+|+.++-+.+--+.+.
T Consensus 395 qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 395 LENKAAGEKALKKAIA 410 (433)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9998877665555443
No 109
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=74.63 E-value=11 Score=33.22 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..++..|+|++|+.+|+++....... ..++..+..|+...|+.++-+.+.-+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345688999999999999999999988765443 34566678899999999888877776664
No 110
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=74.56 E-value=10 Score=43.26 Aligned_cols=86 Identities=7% Similarity=-0.072 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH----------KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYL 511 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~----------~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l 511 (1193)
...+..+.+|++.+... ........+...+|..|+..|+|++|+.+|++++...... ...+..+
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l 313 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN------TKALYRR 313 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh------HHHHHHH
Confidence 34667777777754432 1334455777899999999999999999999998654322 3556678
Q ss_pred HHHHHHcCChhHHHHHHHHHcc
Q 040980 512 RECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 512 ~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..|+..+|+.++.+...-+.+.
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 8899999999887776666554
No 111
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=74.44 E-value=11 Score=39.85 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc----------CChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ----------GIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l----------~~~~~~v~~~leLls 533 (1193)
.+.+|..|+..|+|++|+..|+.+...|....+ ....+..+..|+..+ |+.++-+.+.-+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPW---ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 378999999999999999999999887765432 345666777888877 555555665555554
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=74.37 E-value=11 Score=34.06 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|++|+.+|+++....... ..++..+..|+...|+.++-+.+.-+.+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 455789999999999999999999988765433 24556678889999999888777766664
No 113
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=74.14 E-value=9.6 Score=40.20 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-----
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRK----- 517 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~----- 517 (1193)
..++++.++++.+. ...........+|..|+..|+|++|+..|+++...|-..... ...+..+..|+..
T Consensus 33 ~A~~~~~~~l~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 33 RAIEYFKAVFTYGR---THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV---PQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HHHHHHHHHGGGCS---CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---HHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh---HHHHHHHHHHHHHhcccc
Confidence 34555555555432 233456777899999999999999999999999887654332 2556667788888
Q ss_pred ---cCChhHHHHHHHHHcc
Q 040980 518 ---QGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 518 ---l~~~~~~v~~~leLls 533 (1193)
+|+.++-+...-+++.
T Consensus 107 ~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHH
Confidence 8887777776666664
No 114
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.79 E-value=7.9 Score=33.85 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
...|..|+..|+|++|+.+|+++........+ .+...+..|+..+|+.++-+...-+.+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-----EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46789999999999999999998876543311 15566788999999998888877776653
No 115
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=72.65 E-value=7.8 Score=39.05 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-c---------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-W---------VTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-W---------~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|+..|+|++|+.+|+++........ | ..+...++..+..|+..+|+.++-+.++-+.+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345789999999999999999999987554332 1 122346777889999999999988888777665
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=72.45 E-value=8.3 Score=37.93 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
.-+..+.+|++.--.. ......+|..|+..|+|++|+.+|+++....... + .....+-.|+..+|+.+
T Consensus 54 eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~-----~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 54 EAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-Y-----TPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-C-----HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-c-----HHHHHHHHHHHHcCCHH
Confidence 3455555555442221 2234578999999999999999999997665443 1 34556888999999999
Q ss_pred HHHHHHHHHccC
Q 040980 523 DFVEYSLEMAAL 534 (1193)
Q Consensus 523 ~~v~~~leLls~ 534 (1193)
+-+.+.-+.+.+
T Consensus 122 eA~~~~~~al~l 133 (151)
T 3gyz_A 122 KAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888877666653
No 117
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=72.31 E-value=16 Score=32.44 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYL 511 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l 511 (1193)
...+..+.+|++...... .....+|..|+..|++++|+.+|+++.......+-.....++...+
T Consensus 24 ~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 24 SRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 346777777777654332 2456789999999999999999999887665554444444444333
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=72.07 E-value=14 Score=37.06 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 040980 449 KKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528 (1193)
Q Consensus 449 ~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~ 528 (1193)
.+|++.|.+.-.. ...+...+|..|+..|+|++|+.+|+++....... ...+..+..|+..+|+.++-+...
T Consensus 23 ~~A~~~~~~a~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 23 KGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp HHHHHHHHTSSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444444443211 23577899999999999999999999987654332 245667788999999998887776
Q ss_pred HHHcc
Q 040980 529 LEMAA 533 (1193)
Q Consensus 529 leLls 533 (1193)
-+.+.
T Consensus 95 ~~al~ 99 (213)
T 1hh8_A 95 KEALI 99 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=71.62 E-value=15 Score=32.67 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
......+|..|+..|+|++|+.+|+++...+... ..++..+..|+...|+.++-+.+.-+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999987765432 24556778899999999888777766654
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=71.61 E-value=9.3 Score=36.99 Aligned_cols=72 Identities=6% Similarity=-0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
.-++.+.+|++.--.. ......+|..|+..|++++|+.+|+++...--.. ..++..+..|+.+.|+..
T Consensus 49 ~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 49 LAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChH
Confidence 3455566665543221 3456689999999999999999999987654332 245566778888888765
Q ss_pred HHHH
Q 040980 523 DFVE 526 (1193)
Q Consensus 523 ~~v~ 526 (1193)
+-+.
T Consensus 117 ~aa~ 120 (150)
T 4ga2_A 117 GRAK 120 (150)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 4433
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=71.60 E-value=11 Score=36.58 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.+|++..... ......+|..|+..|+|++|+..|+++....... ...+..+..|+..+|+.+
T Consensus 39 ~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 39 DAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHH
Confidence 3455555555543221 2334678999999999999999999987654433 134566788999999998
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+...-+.+.
T Consensus 107 ~A~~~~~~al~ 117 (148)
T 2vgx_A 107 EAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87766655553
No 122
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.21 E-value=23 Score=35.76 Aligned_cols=68 Identities=16% Similarity=0.028 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------------------CcHHHHHHHHHHHHHHHHHcCC
Q 040980 460 ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE-------------------GWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 460 ~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e-------------------gW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
..-+...+..-.|..+|..|+|.+|..+|+.++...+.= -|..-+.++.-++.+|+.+++.
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~ 137 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence 356777888999999999999999999999987665520 0222345788899999999999
Q ss_pred hhHHHHH
Q 040980 521 VRDFVEY 527 (1193)
Q Consensus 521 ~~~~v~~ 527 (1193)
.++.+.+
T Consensus 138 ~~~Ai~~ 144 (167)
T 3ffl_A 138 DKDAIAI 144 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=71.18 E-value=13 Score=33.30 Aligned_cols=63 Identities=10% Similarity=-0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
......+|..|+..|+|++|+.+|+++....... ..+...+..|+...|+.++-+.+.-+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3456789999999999999999999988765433 34566778889999998887777766664
No 124
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=70.58 E-value=25 Score=33.60 Aligned_cols=78 Identities=17% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..++++.++++..... ..+...+|..|+..|++++|+.+|+.+....... ..+...+..|+...|+.+
T Consensus 94 ~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 94 LAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHH
Confidence 3556666666653321 2455788999999999999999999987665333 345567888889999887
Q ss_pred HHHHHHHHHc
Q 040980 523 DFVEYSLEMA 532 (1193)
Q Consensus 523 ~~v~~~leLl 532 (1193)
+-+.+.-+.+
T Consensus 162 ~A~~~~~~~~ 171 (186)
T 3as5_A 162 EALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666555544
No 125
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=69.85 E-value=18 Score=33.52 Aligned_cols=80 Identities=6% Similarity=-0.107 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..-+..+.+|++..-.. ......+|..|...|++++|+..|++++..--.. ...+..+..|+..+|+.
T Consensus 34 ~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 34 AEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Confidence 34566677777654332 2345678999999999999999999987654332 23456677888889988
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+...-+.+.
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888777766664
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=69.71 E-value=19 Score=40.06 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhcC---------cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHK---------ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLR 512 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~---------~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~ 512 (1193)
...+..+.+|++...... ...+...+...+|..|+..|+|++|+.+|++++...... ...+..+.
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg 237 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRG 237 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHH
Confidence 345666777776655442 123335677889999999999999999999998765432 34566788
Q ss_pred HHHHHcCChhHHHHHHHHHcc
Q 040980 513 ECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 513 ~Ca~~l~~~~~~v~~~leLls 533 (1193)
.|+..+|+.++-+...-+.+.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 899999998887776666554
No 127
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=69.49 E-value=20 Score=30.17 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQY 495 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Y 495 (1193)
...+..+.+|++..... ......+|..|+..|++++|+.+|+++....
T Consensus 26 ~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 26 DEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34566667776653221 3456789999999999999999999987654
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=69.29 E-value=1.2e+02 Score=31.99 Aligned_cols=62 Identities=3% Similarity=-0.162 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|++++|+.+|+++....... ..+...+..|+..+|+.++-+.+.-+++.
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445678888888999999999998887654332 23456678888888888877776666554
No 129
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=69.25 E-value=16 Score=34.59 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1085 TYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1085 ~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
.++++|.|.|...+++.++++.-+++-+.|.. .+.|.|++...+...+.-
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~--~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQ--TIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEESCC--EEEECTTCEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEeCCC--cEEECCCCEEEEEEEEEE
Confidence 46669999999999999999986678888854 699999998888777644
No 130
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=68.78 E-value=25 Score=34.33 Aligned_cols=78 Identities=8% Similarity=0.097 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.++.+.+|++..... ......+|..|+..|+|++|+.+|+++....... ..+...+..|+.++|+.++
T Consensus 92 a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 92 AIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHHH
Confidence 445555555543322 2345678999999999999999999987654332 2455667889999999988
Q ss_pred HHHHHHHHcc
Q 040980 524 FVEYSLEMAA 533 (1193)
Q Consensus 524 ~v~~~leLls 533 (1193)
-+...-+.+.
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776666553
No 131
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=68.57 E-value=14 Score=41.94 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQE----------GWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e----------gW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
...+|..|+..|+|++|+.+|++++..+... .-......++..+..|+.++|+.++-+.++-+.+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 5678999999999999999999998754331 023355677888999999999999999888888764
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=68.53 E-value=23 Score=41.41 Aligned_cols=87 Identities=9% Similarity=-0.064 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhhcC---------cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHK---------ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLR 512 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~---------~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~ 512 (1193)
...+..+.+|++...... ...+...+...+|..|+++|+|++|+.+|++++...... ...+..+.
T Consensus 285 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g 358 (457)
T 1kt0_A 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRG 358 (457)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHH
Confidence 356777777777665542 123445677889999999999999999999998765432 35567788
Q ss_pred HHHHHcCChhHHHHHHHHHccC
Q 040980 513 ECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 513 ~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.|+..+|+.++.+...-+.+.+
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8999999999888877777754
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=68.23 E-value=26 Score=31.24 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.++++.... .......+|..|+..|++++|+.+|+++....... ......+..|+...|+.+
T Consensus 19 ~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 19 EAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHhcCHH
Confidence 345556666544221 12345678999999999999999999987665433 234456778889999988
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+.+.-+++.
T Consensus 87 ~A~~~~~~~~~ 97 (136)
T 2fo7_A 87 EAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777766654
No 134
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=67.63 E-value=32 Score=40.81 Aligned_cols=92 Identities=10% Similarity=-0.086 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhc-Cc-chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH-KA-RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ--EGWVTLLWEVLGYLRECSRK 517 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~-~~-~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~--egW~~L~~~~L~~l~~Ca~~ 517 (1193)
...++++.+|++...+. |- .-........||..|...|+|++|+.++++++..|++ .....-....+..|..-+..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45788888998888773 32 2346667789999999999999999999999877653 22455566777888888889
Q ss_pred cCChhHHHHHHHHHcc
Q 040980 518 QGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 518 l~~~~~~v~~~leLls 533 (1193)
.|+.++-+.+.-+.+.
T Consensus 406 ~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 406 AGHIEVGHGMICKAYA 421 (490)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9998877776665553
No 135
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=67.50 E-value=21 Score=36.36 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 463 MGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 463 ~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
....+...+|..|+..|+|++|+.+|++++...-.. ...+..+..|+..+|+.++-+.+.-+.+.+
T Consensus 52 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 52 ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344455669999999999999999999988765443 355666788889999998888877776653
No 136
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=67.16 E-value=24 Score=35.19 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
.+...+|..|+..|++++|+.+|+++....... ...+..+..|+...|+.+.-+.+.-+.+
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344566777777777777777777765544322 2334455666666666665555544444
No 137
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=67.04 E-value=16 Score=33.82 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=56.2
Q ss_pred CCCceEEEcCCCCCeeeccEEEEEEEEeeCCccc-ccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccc
Q 040980 765 PDPQVDVDLGASGPALVGESFMIPVTVASRGHDI-YSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEE 843 (1193)
Q Consensus 765 ~~p~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~-~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~ 843 (1193)
+.|.++|++. +.+.+|+-..+.|+.+|-=... ..+.+.+ .|.||..
T Consensus 4 ~~P~i~I~v~--g~~~v~~~l~v~vsf~NPL~~~L~~c~~~v-----EG~GL~~-------------------------- 50 (102)
T 2xzz_A 4 FQSMLSLTLL--GAAVVGQECEVQIVFKNPLPVTLTNVVFRL-----EGSGLQR-------------------------- 50 (102)
T ss_dssp --CEEEEEES--SCCCSSSCEEEEEEEECCSSSCBCSEEEEE-----EETTTEE--------------------------
T ss_pred cCCcEEEEEC--CCcccCCeEEEEEEEECCCCCcccCEEEEE-----ECCCCCc--------------------------
Confidence 3576666665 5568899999999998885432 2223222 1334431
Q ss_pred cCCchhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEec
Q 040980 844 LGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYS 893 (1193)
Q Consensus 844 ~~~~~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~ 893 (1193)
.. .+.++++.||++....+.+.-.+.|.+.|.++++-.
T Consensus 51 -------~~-----~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~ 88 (102)
T 2xzz_A 51 -------PK-----ILNVGDIGGNETVTLRQSFVPVRPGPRQLIASLDSP 88 (102)
T ss_dssp -------EE-----EEEECCBCTTCEEEEEEEECCCSCSSCCCEEEEECG
T ss_pred -------ce-----EEEcCcCCCCCEEEEEEEEecCcccceEEEEEEECC
Confidence 10 145567889999998888888899999999998764
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=66.73 E-value=8 Score=35.19 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
-...+|..|+..|+|++|+.+|+++....... ..++..+..|+...|+.++-+.+.-+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35678999999999999999999987654433 35566788888999998888777766664
No 139
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.44 E-value=23 Score=32.79 Aligned_cols=64 Identities=9% Similarity=-0.103 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|+..|+|++|+.+|+++..... -......++..+..|+..+|+.++-+.+.-+.+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 356889999999999999999999875432 2334457777889999999999988887777664
No 140
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=66.31 E-value=19 Score=42.02 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhc-C-cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-cHHHHHHHHHHHHHHHHHc
Q 040980 443 EILGLLKKSCESYGNH-K-ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE-G-WVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~-~-~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e-g-W~~L~~~~L~~l~~Ca~~l 518 (1193)
..+++..+|++-|.+. | -..........||..|...|+|++|+.+|++++..+..- | -......++.+|.+|..++
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4566777777777663 3 345566777899999999999999999999997666432 2 3456667778888888765
Q ss_pred C
Q 040980 519 G 519 (1193)
Q Consensus 519 ~ 519 (1193)
+
T Consensus 427 ~ 427 (429)
T 3qwp_A 427 R 427 (429)
T ss_dssp H
T ss_pred h
Confidence 3
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=65.68 E-value=13 Score=32.33 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+|..|+..|+|++|+.+|+++....... ..+...+..|+..+|+.++-+.+.-+.+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467889999999999999999988765433 23456678889999999888877776664
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=65.61 E-value=20 Score=33.94 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.+.-+.+.-+.+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446789999999999999999999987765433 34566778888999988877776666554
No 143
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=65.53 E-value=12 Score=32.70 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l 518 (1193)
..+..+.+|++..... .......+|..|+..|+|++|+.+|++++....... .......+..++.|+.+.
T Consensus 18 ~A~~~~~~al~~~p~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 18 NALQALEEFLQTEPVG-----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-HHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHH
Confidence 4566666666653321 222677899999999999999999999876554331 111224444555555443
No 144
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=65.32 E-value=26 Score=36.05 Aligned_cols=80 Identities=13% Similarity=-0.017 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRD 523 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~ 523 (1193)
.++++.++++ .+...........+|..|+..|++++|+.+|+++....... ..++..+..++...|+.+.
T Consensus 124 A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 124 AYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH
Confidence 4455555554 11223344566789999999999999999999987655332 3455678888999999988
Q ss_pred HHHHHHHHcc
Q 040980 524 FVEYSLEMAA 533 (1193)
Q Consensus 524 ~v~~~leLls 533 (1193)
-+.+.-+++.
T Consensus 194 A~~~~~~~~~ 203 (252)
T 2ho1_A 194 ARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8877777664
No 145
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=65.03 E-value=30 Score=32.99 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.++++..... ..+...+|..|+..|++++|..+|+++....... ..+...+..|+...|+.
T Consensus 59 ~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 59 DRGTELLERSLADAPDN------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRF 126 (186)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcH
Confidence 34566777777653221 3456678999999999999999999987765432 24556677888899998
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+..+.+.-+.+.
T Consensus 127 ~~A~~~~~~~~~ 138 (186)
T 3as5_A 127 DEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 887777766654
No 146
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.93 E-value=34 Score=39.44 Aligned_cols=83 Identities=16% Similarity=0.012 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI 520 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~ 520 (1193)
....++++..+++.-+..++.=+...+...+|..|+..|+|++|++.+.++....++..=..++.++...-.+-+..+++
T Consensus 75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Confidence 45678999999998888887777778889999999999999999999999988776633345666666666777777777
Q ss_pred hhH
Q 040980 521 VRD 523 (1193)
Q Consensus 521 ~~~ 523 (1193)
...
T Consensus 155 ~~k 157 (394)
T 3txn_A 155 LPK 157 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=64.70 E-value=20 Score=33.95 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..++..|+|++|+.+|+++....... ......+..|+..+|+.++-+...-+.+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45678999999999999999999987654332 23445677899999999888877776664
No 148
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=64.51 E-value=22 Score=36.92 Aligned_cols=62 Identities=11% Similarity=-0.124 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|+|++|+.+|+++....... ..++..+..|+..+|+.++-+.+.-+++.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345678888888888888888888887655433 24556677888888888877776666654
No 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=64.07 E-value=31 Score=34.97 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=21.3
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
+..+..+.+|...--.++++.|+++|+.+.+. . |. .. ...+.+..+++..|+..+|+..|
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~---~~---~~-------~~~~~la~~~~~~~~~~~A~~~~ 80 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-------N---KE---DA-------IPYINFANLLSSVNELERALAFY 80 (243)
T ss_dssp ---------------------CCTTHHHHHTT-------C---TT---CH-------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------C---cc---cH-------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555666666666667777777777766541 1 10 01 12233444556667777777666
Q ss_pred HH
Q 040980 297 HQ 298 (1193)
Q Consensus 297 ~~ 298 (1193)
++
T Consensus 81 ~~ 82 (243)
T 2q7f_A 81 DK 82 (243)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 150
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=63.99 E-value=31 Score=34.99 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
...+|..|+..|++++|+.+|+++....... ..+...+..++...|+.++-+.+.-+++
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666655443322 1234445556666666655555544444
No 151
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=63.36 E-value=16 Score=37.32 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++.+.+|++...... . .....+|..|+..|+|++|+.+|+++...... ...+...+..|+..+|+.
T Consensus 24 ~~A~~~~~~al~~~~~~~---~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQD---S--VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHHHHHHHHHTTTCC---H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccCCCC---c--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHcccH
Confidence 456777777777654111 1 34445899999999999999999998754322 235566788899999999
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
+.-+.+.-+.+.
T Consensus 93 ~~A~~~~~~al~ 104 (228)
T 4i17_A 93 QEYIATLTEGIK 104 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777664
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=62.85 E-value=20 Score=33.13 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
+.+|..++..|+|++|+..|++++...-.. ......+..|+..+|+.++-+...-+.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999998765443 24455677788899999888777766664
No 153
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=61.60 E-value=39 Score=33.52 Aligned_cols=61 Identities=13% Similarity=-0.054 Sum_probs=29.7
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 468 GFQMAVEYFAL-DDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 468 ~~~lA~ey~~~-gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
...+|..|+.. |++++|+.+|+++.. .... .-...+...+..|+...|+.+.-+.+.-+.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTY---PTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC---SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555 666666666655544 1000 0112344455555566666555555444444
No 154
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.47 E-value=35 Score=30.74 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred hhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 040980 217 LNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWF 296 (1193)
Q Consensus 217 l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~ 296 (1193)
|..+-+|-+|.++--++|.+.|+.-|+.|.+.+.+-- .. +.... -+.+.++.+++..|+...|+..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--~~----~~~~~-------~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--IS----TIDKV-------SVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CC----SSCHH-------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--CC----cccHH-------HHHHHHHHHHHHccCHHHHHHHH
Confidence 6778899999999999999999999999987764311 00 11122 33377889999999999999998
Q ss_pred HHHHH
Q 040980 297 HQHNA 301 (1193)
Q Consensus 297 ~~Hi~ 301 (1193)
++-+.
T Consensus 70 ~~al~ 74 (104)
T 2v5f_A 70 KKLLE 74 (104)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88544
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.26 E-value=24 Score=33.97 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
....+|..++..|+|++|+.+|+++....... ......+..|+..+|+.++-+...-+.+..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678999999999999999999987543322 233455778899999998888877776653
No 156
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=60.78 E-value=41 Score=30.08 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEV 507 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~ 507 (1193)
..-+..+.+|++..... ......+|..|...|++++|+.+|+++.......+-......+
T Consensus 36 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 95 (115)
T 2kat_A 36 DAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKEL 95 (115)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 34566677777654322 2345688999999999999999999998777665544433333
No 157
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=59.60 E-value=25 Score=36.59 Aligned_cols=82 Identities=9% Similarity=-0.070 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..++.+.+|++ .. ............+|..|...|++++|+.+|+++........ .++..+..|+..+|+.+
T Consensus 55 ~A~~~~~~a~~-~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 55 LAQKDIETYFS-KV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHHHHHHT-TS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh-cc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHH
Confidence 34556666655 11 22233344456777777788888888888877766543331 34555667777777777
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+.+.-+.+.
T Consensus 126 ~A~~~~~~al~ 136 (272)
T 3u4t_A 126 LAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHGGGCC
T ss_pred HHHHHHHHHhh
Confidence 66666555554
No 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=59.12 E-value=23 Score=39.36 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG---------WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg---------W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
......+|..|+..|+|++|+.+|++++....... -..+...++..+..|+.++|+.++-+.++-+.+.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566889999999999999999999987654432 12334567778999999999999888888777653
No 159
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=58.68 E-value=21 Score=36.86 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980 462 RMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 462 R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~ 519 (1193)
.........+|..|+..|+|++|+..|+++...|-.... ....+..+..|+..++
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRGLTNMALD 92 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHHHHHHhhh
Confidence 445566677777777777777777777777776655422 1233444555665554
No 160
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=58.35 E-value=27 Score=34.14 Aligned_cols=63 Identities=10% Similarity=-0.007 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
...+.+|..|+..|+|++|+.+|+++...--.. ......+-.|+..+|+.++-+.+.-+.+.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 456789999999999999999999987653322 233445678999999999888877776653
No 161
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=58.01 E-value=39 Score=34.97 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|++++|+.+|+++........+..+ +..++...|+.+.-+...-+.+.
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-------WLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-------HHHHHHHhcCHHHHHHHHHHHHh
Confidence 45678999999999999999999999876655532222 22233556777776666655443
No 162
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.82 E-value=17 Score=32.52 Aligned_cols=64 Identities=14% Similarity=-0.004 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGY 510 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~ 510 (1193)
+.....++.+|++.-.... | ....+|..++..|+|++|+.+|++++..-...-|...+..-+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~--r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNE--A----ALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINK 88 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCH--H----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 3567778888887443332 2 22356899999999999999999997655445676655554433
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=57.00 E-value=30 Score=40.42 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEG---------WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg---------W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.....+|..|+..|+|+.|+.+|++++....... -..+...++..+..|+.++|+.+.-+.++-+.+.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3456789999999999999999999987654432 12234567778899999999999988888777653
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=55.36 E-value=24 Score=39.40 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhcC-----------cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNHK-----------ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGY 510 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~-----------~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~ 510 (1193)
...+..+.+|++...... ...+...+...+|..|+..|+|++|+.+|++++...... ...+..
T Consensus 196 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~ 269 (338)
T 2if4_A 196 EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN------PKALFR 269 (338)
T ss_dssp HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 346677777776543321 011122467889999999999999999999998765432 345677
Q ss_pred HHHHHHHcCChhHHHHHHHHHccC
Q 040980 511 LRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 511 l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
+..|+..+|+.+.-+...-+.+.+
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999998888877766653
No 165
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=54.65 E-value=77 Score=31.00 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=49.8
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNP 169 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~ 169 (1193)
..+++++|+. .|+.....+...++.++......+..++ |++.+..........+.+..+++..++. +|..+.
T Consensus 76 ~~~~i~v~d~----~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~Sa 147 (189)
T 4dsu_A 76 GEGFLCVFAI----NNTKSFEDIHHYREQIKRVKDSEDVPMV-LVGNKCDLPSRTVDTKQAQDLARSYGIP---FIETSA 147 (189)
T ss_dssp CSEEEEEEET----TCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTSSSCSSCHHHHHHHHHHHTCC---EEECCT
T ss_pred CCEEEEEEEC----CCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccCcccccCHHHHHHHHHHcCCe---EEEEeC
Confidence 4566778885 4565566666667777776665565544 3344432333455677888888888753 444444
Q ss_pred CCchhHHHHHHHHHH
Q 040980 170 NTASDLQISLNRLAS 184 (1193)
Q Consensus 170 ~~~~~l~~~v~~L~~ 184 (1193)
.....+......|..
T Consensus 148 ~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 148 KTRQGVDDAFYTLVR 162 (189)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 333344443333333
No 166
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=54.42 E-value=32 Score=35.22 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+..+.+|++..-.. ......+|..|+..|++++|+..|+++.... .. ..+...+..|+..+|+.+
T Consensus 102 ~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 102 QALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHHHHHHHHHHHHcCCHH
Confidence 3455666666543221 2344678999999999999999999987765 22 244567888999999998
Q ss_pred HHHHHHHHHcc
Q 040980 523 DFVEYSLEMAA 533 (1193)
Q Consensus 523 ~~v~~~leLls 533 (1193)
+-+...-+.+.
T Consensus 169 ~A~~~~~~al~ 179 (217)
T 2pl2_A 169 EALAQYAKALE 179 (217)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777777664
No 167
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=54.13 E-value=58 Score=31.48 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH-HHhCCCH--HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVE-YFALDDF--NNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ 518 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~e-y~~~gd~--~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l 518 (1193)
...+..+.+|++..... ..+...+|.. |+..|++ ++|+.+|+++....... ...+..+..|+...
T Consensus 61 ~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 61 SNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc
Confidence 34566666666554322 3456678888 8899999 99999999987665433 24556678899999
Q ss_pred CChhHHHHHHHHHccC
Q 040980 519 GIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 519 ~~~~~~v~~~leLls~ 534 (1193)
|+.+.-+.+.-+++..
T Consensus 129 g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999888887777754
No 168
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=53.92 E-value=28 Score=37.17 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHcC
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWV---TLLWEVLGYLRECSRKQG 519 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~---~L~~~~L~~l~~Ca~~l~ 519 (1193)
..++++.+|++.... ...+...+|..|+..|+|++|+.+|+++...+...+-. .-...++..+..|+..+|
T Consensus 177 ~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 177 LAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 345555555544322 13556789999999999999999999998776431111 111235556788899999
Q ss_pred ChhHHHHHHHHHcc
Q 040980 520 IVRDFVEYSLEMAA 533 (1193)
Q Consensus 520 ~~~~~v~~~leLls 533 (1193)
+.++-+.+.-+.+.
T Consensus 251 ~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 251 KYAEALDYHRQALV 264 (330)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 98887777766664
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=53.66 E-value=2.4e+02 Score=33.25 Aligned_cols=100 Identities=7% Similarity=-0.010 Sum_probs=74.1
Q ss_pred cchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 040980 215 IDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAIT 294 (1193)
Q Consensus 215 ~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~ 294 (1193)
|....+-.--+|...--.++++.|+.+|+.|.+....+.+..-. . +| ..-.++-.+|...|+..+|+.
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-----~------~a-~~l~nLa~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-----Q------LG-MAVMRAGLTNWHAGHIEVGHG 414 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-----H------HH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-----H------HH-HHHHHHHHHHHHCCCHHHHHH
Confidence 44566666678888888899999999999999998888776531 1 11 112345566888899999999
Q ss_pred HHHHHHHHhhcccCCCcchhhhHHHHHHHHHHHHHHhc
Q 040980 295 WFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLD 332 (1193)
Q Consensus 295 q~~~Hi~~~~~~~G~~e~~f~h~~W~srQ~~~faeL~~ 332 (1193)
-+++=+..+....|... -..+.+...+++...
T Consensus 415 ~~~~Al~i~~~~lG~~H------p~~~~~~~~l~~~~~ 446 (490)
T 3n71_A 415 MICKAYAILLVTHGPSH------PITKDLEAMRMQTEM 446 (490)
T ss_dssp HHHHHHHHHHHHTCTTS------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHH
Confidence 99999999998889863 455556666666553
No 170
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=52.93 E-value=34 Score=40.84 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc---CChhHHHHHHHHHcc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQ---GIVRDFVEYSLEMAA 533 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l---~~~~~~v~~~leLls 533 (1193)
.....+|..|+..|++++|+.+|+++....... ...+..+..|+..+ |+.++.+...-+.+.
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 455677888888888888888888876554332 24556677788888 777766666655554
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=52.65 E-value=40 Score=39.61 Aligned_cols=80 Identities=6% Similarity=-0.056 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.+|++..... ......+|..|+..|+|++|+.+|+++....... ...+..+..|+..+|+.
T Consensus 23 ~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 23 ENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMALGKF 90 (477)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Confidence 34566666666653222 3455677888888888888888888876543222 23445566677777777
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++-+...-+.+.
T Consensus 91 ~eA~~~~~~al~ 102 (477)
T 1wao_1 91 RAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766665555443
No 172
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=52.27 E-value=29 Score=42.52 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEecc-------CCCcEEeCCCCeEEEEEEEEE
Q 040980 1065 LSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGV-------HNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1065 ~~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~-------k~~~l~llP~s~~~~~~~l~P 1136 (1193)
..++.+.++.+... +|++|.+.+.+.|.|....++.+.+... .-.|.|. .+.++.|.|+++..+.+.+.+
T Consensus 470 ~~~v~~~i~~~~~~-~G~df~v~v~~~N~s~~~~~v~~~l~a~-~v~YtG~~~~~~~~~~~~~~L~p~~~~~v~~~i~y 546 (695)
T 1g0d_A 470 QGRLQLSIKHAQPV-FGTDFDVIVEVKNEGGRDAHAQLTMLAM-AVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHY 546 (695)
T ss_dssp --CEEEEEEECCCB-TTCCEEEEEEEEECSSSCEEEEEEEEEE-EECTTCBCCCCCCEEEEEEEECTTEEEEEEEEECH
T ss_pred CCCeEEEEEeCCCC-CCCCEEEEEEEEECCCCCEEEEEEEEEE-EEeeCCcccCceeEeeEEEEECCCceEEEEEEECH
Confidence 55677888877777 9999999999999999998888887652 2223344 356779999999988887655
No 173
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=51.92 E-value=92 Score=36.21 Aligned_cols=85 Identities=9% Similarity=0.115 Sum_probs=65.6
Q ss_pred cchhhhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 040980 215 IDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAIT 294 (1193)
Q Consensus 215 ~~l~vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~ 294 (1193)
|....+-.--+|....-+++++.|+.+|+.|.+....+.+..-. .+|..+ .++-.+|...|+..+|+.
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-----------~~a~~l-~nLa~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-----------NVASMW-LKLGRLYMGLENKAAGEK 403 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-----------HHHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-----------HHHHHH-HHHHHHHHhccCHHHHHH
Confidence 34455555667877777899999999999999999888876531 122222 366677889999999999
Q ss_pred HHHHHHHHhhcccCCCc
Q 040980 295 WFHQHNASYKKLVGAPE 311 (1193)
Q Consensus 295 q~~~Hi~~~~~~~G~~e 311 (1193)
-+++=+..+....|...
T Consensus 404 ~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 404 ALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999998888764
No 174
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=51.58 E-value=51 Score=35.87 Aligned_cols=64 Identities=14% Similarity=-0.001 Sum_probs=43.0
Q ss_pred hhHHhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Q 040980 219 IRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQ 298 (1193)
Q Consensus 219 vR~~FK~a~~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p~~~r~~E~r~lad~i~~ki~rl~l~~~~~~~Ai~q~~~ 298 (1193)
+...|.+|....-.++++.|+++|+.|.+. -+. ..+ ..+.+..+++..|+..+|+..|++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~---------~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 123 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPK---------HME-------AWQYLGTTQAENEQELLAISALRR 123 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTT---------CHH-------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------CHH-------HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 444567888887788999999888887642 111 111 233455667778889999888887
Q ss_pred HHHH
Q 040980 299 HNAS 302 (1193)
Q Consensus 299 Hi~~ 302 (1193)
=+..
T Consensus 124 al~~ 127 (368)
T 1fch_A 124 CLEL 127 (368)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 175
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=51.50 E-value=42 Score=32.56 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHcCCh--
Q 040980 445 LGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLREC-SRKQGIV-- 521 (1193)
Q Consensus 445 i~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~C-a~~l~~~-- 521 (1193)
++++.+|++..... ......+|..|+..|+|++|+.+|+++....... ..++..+..| +...|+.
T Consensus 30 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 30 LQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcch
Confidence 45566666543221 2356789999999999999999999988765433 2345566777 6678886
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++.+.+.-+.+.
T Consensus 98 ~~A~~~~~~al~ 109 (177)
T 2e2e_A 98 AQTRAMIDKALA 109 (177)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555553
No 176
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=51.31 E-value=42 Score=32.80 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHH
Q 040980 445 LGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDF 524 (1193)
Q Consensus 445 i~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~ 524 (1193)
+..+.+|++..-.. ......+|..|...|++++|+.+|+++...... +.. ......+..|+..+|+.++-
T Consensus 94 ~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~--~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 94 LKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLG--AQD--GEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--TTT--THHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--cCh--HHHHHHHHHHHHHhCCCCcH
Confidence 45566666543322 244567899999999999999999998754321 100 13455677888899988877
Q ss_pred HHHHHHHc
Q 040980 525 VEYSLEMA 532 (1193)
Q Consensus 525 v~~~leLl 532 (1193)
+...-+.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.27 E-value=36 Score=36.57 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
-..+...+|..|+..|+|++|+.+|+++....... ...+..+..++..+|+.++-+...-+.+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47777888999999999999999999887653322 24455677888888888877776655554
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=50.21 E-value=39 Score=38.59 Aligned_cols=67 Identities=12% Similarity=-0.075 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 466 FCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVT---LLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 466 ~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~---L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
.+.-.||..|+..|+|++|+++|+++...++..+-.. -.......+..|+..+|+.++-+.+.-+.+
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3455789999999999999999999887766543221 112345567889999999887766554443
No 179
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=48.73 E-value=3e+02 Score=30.03 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|...|++++|+.+|+++....... ...+..+..++...|+.++-+...-+++.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888999999999999999887654332 24556678888899998888887777765
No 180
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=47.13 E-value=75 Score=35.72 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...+.++.+|++..... ......+|..|+..|++++|+.+|+++....... ......+..|+..+|+.
T Consensus 43 ~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDN------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCH
Confidence 34566666666542221 4456778999999999999999999987654332 35566688899999999
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+.+.-+++..
T Consensus 111 ~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 111 DEAEDDFKKVLKS 123 (450)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9888887777753
No 181
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=46.08 E-value=17 Score=41.29 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=56.8
Q ss_pred ccCCCeEEEeecCCce-eeCCeEEEEEEEEcCCCce-EEEEEEEEeCCC-eEEeccC-C-------CcEEeCCCCeEEEE
Q 040980 1063 VELSPLVVSLECPPYA-VLGEPFTYTIKIWNQTKLL-QEVKFCVADAQS-FVLSGVH-N-------DTVFVLPKSKHILC 1131 (1193)
Q Consensus 1063 ~~~~pl~v~~~~P~~~-~vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~-F~fsG~k-~-------~~l~llP~s~~~~~ 1131 (1193)
..+-||.+.+.+|-.+ .-||++.+++.|.|+|... ..+.+.|...-. .+|+..+ . ..-.|.|+++..=.
T Consensus 208 ~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~y~~~Va~~E~~epV~pgst~~k~ 287 (380)
T 3ugu_A 208 MSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKT 287 (380)
T ss_dssp TCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCEEEEEEEEEECSCCBCTTEEEEEE
T ss_pred ecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCeEEEEEEEeccCCcCCCCCeEEee
Confidence 4678888888888544 4699999999999999877 457778777333 2232111 0 11168999999999
Q ss_pred EEEEECccc
Q 040980 1132 YKVVPLGSG 1140 (1193)
Q Consensus 1132 ~~l~PL~~G 1140 (1193)
|.|.|+.+.
T Consensus 288 ~~l~P~l~~ 296 (380)
T 3ugu_A 288 LTLVPLLAN 296 (380)
T ss_dssp EEECCCGGG
T ss_pred EEEEEeccc
Confidence 999998665
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.92 E-value=59 Score=34.87 Aligned_cols=51 Identities=4% Similarity=0.041 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcC-cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 040980 448 LKKSCESYGNHK-ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE 498 (1193)
Q Consensus 448 L~kA~~~f~~~~-~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e 498 (1193)
+..|++.|.+.- ...--......+|..|+..|+|++|+.+|+++.......
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 54 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 345555555531 111223456789999999999999999999988766543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=45.61 E-value=41 Score=30.33 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE 498 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e 498 (1193)
...+..+.+|++.+-.. ..+...+|..|+..|++++|+.+|+++......+
T Consensus 44 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 44 RKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34677777777665443 3456779999999999999999999988765443
No 184
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=44.65 E-value=70 Score=37.99 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHH
Q 040980 466 FCGFQMAVEYFAL---DDFNNAKQLFDGVANQYR 496 (1193)
Q Consensus 466 ~l~~~lA~ey~~~---gd~~~Al~~l~~~~~~Yr 496 (1193)
.....+|..|... |++++|..+|+++.....
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 3456788888888 888888888887765443
No 185
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=44.16 E-value=49 Score=38.64 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 444 ILGLLKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDF-NNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~-~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
+.+.+.+|+..+... ....-...+...+|..|+..|+| ++|+.+|++++...... ...+..+..|+...|+.
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCH
Confidence 444555555555542 12222345667899999999999 99999999987654432 24556678888899998
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+.+.-+.+..
T Consensus 154 ~~A~~~~~~al~~ 166 (474)
T 4abn_A 154 TSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 8888877777653
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.36 E-value=55 Score=36.78 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
...++++.++..-+...+.......+...++..+...|++++|+.+++.+...++..+=..+...+...+..++...|+-
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 45677778888777777666666677777888888999999999999998877766654444556677788888888888
Q ss_pred hHHHHHHHHHcc
Q 040980 522 RDFVEYSLEMAA 533 (1193)
Q Consensus 522 ~~~v~~~leLls 533 (1193)
++.+.+.-+++.
T Consensus 152 ~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 152 KDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666553
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=42.72 E-value=72 Score=31.80 Aligned_cols=69 Identities=6% Similarity=-0.098 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---C--cH-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQE---G--WV-TLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e---g--W~-~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.......|..++..|+|+.|+..|++++..-... . .. .....+...+-.|+.++|+.++-+.++-+.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556788999999999999999999986543330 0 00 01223566678899999999888877666554
No 188
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=41.60 E-value=77 Score=30.75 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=46.2
Q ss_pred eeeCCeEEEEEEEEcCCCceEE---EEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1078 AVLGEPFTYTIKIWNQTKLLQE---VKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1078 ~~vg~p~~~~~~I~N~T~~~~~---l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
-.-+.+|.+..+|.|+.+.... +.+.+.-++-=+-+|.....+.|.|+++..+...+.-
T Consensus 14 ~~~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i 75 (136)
T 3but_A 14 TDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRL 75 (136)
T ss_dssp CSSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEE
T ss_pred eCcEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEE
Confidence 3456779999999999997744 4567766776677899899999999998887776554
No 189
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=41.15 E-value=95 Score=29.49 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=43.4
Q ss_pred eeCCeEEEEEEEEcCCCceEEE--------EEEEEe-CCCeEE--eccC---C--CcEEeCCCCeEEEEEEEE-ECccc
Q 040980 1079 VLGEPFTYTIKIWNQTKLLQEV--------KFCVAD-AQSFVL--SGVH---N--DTVFVLPKSKHILCYKVV-PLGSG 1140 (1193)
Q Consensus 1079 ~vg~p~~~~~~I~N~T~~~~~l--------~l~le~-s~~F~f--sG~k---~--~~l~llP~s~~~~~~~l~-PL~~G 1140 (1193)
..|+.+.+.+.|.|+++...++ ++.|-+ ...-+| |..+ | ....|.||.+..+....- ++..|
T Consensus 15 ~~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG 93 (120)
T 3isy_A 15 QEPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPG 93 (120)
T ss_dssp ECSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSE
T ss_pred cCCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCc
Confidence 3788999999999999977554 555655 334344 6555 2 234899999999988877 33444
No 190
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.99 E-value=86 Score=29.40 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=50.5
Q ss_pred ceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECccccee
Q 040980 1077 YAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQ 1143 (1193)
Q Consensus 1077 ~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~ 1143 (1193)
.+.+|+.-+.++.|+|.......+++.. ...|-++=. ...|.|+++..+...+.|..+|...
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f~~~~--~~~F~i~P~---~g~L~pg~~~~i~V~F~P~~~g~~~ 97 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVFHIKT--CRPFSIEPA---IGTLNVGESMQLEVEFEPQSVGDHS 97 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEEEEEC--CTTEEEESS---EEEECTTCEEEEEEEECCSSSBCCC
T ss_pred CeecCCeEEEEEEEEECCCCCEEEEEec--CCCeEEECC---cCEECCCCEEEEEEEEEcCCCccEE
Confidence 4789999999999999999877765554 457777533 4789999999999999999988743
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=40.58 E-value=8.4e+02 Score=32.95 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCcchHHH-----HH--HHHHHHHHHhC-CCHHHHHHHHHH------HHHHHHhcCcHHHHHHHHH---
Q 040980 447 LLKKSCESYGNHKARRMGS-----FC--GFQMAVEYFAL-DDFNNAKQLFDG------VANQYRQEGWVTLLWEVLG--- 509 (1193)
Q Consensus 447 LL~kA~~~f~~~~~~R~~~-----~l--~~~lA~ey~~~-gd~~~Al~~l~~------~~~~Yr~egW~~L~~~~L~--- 509 (1193)
-|..+++.|.......++. .+ ..+||.-.|+. |+|++|++++.+ +..+-...|=..+..++|.
T Consensus 1479 ~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~~dAm~~a~~S~d~e~~e~ll~~F~ 1558 (1630)
T 1xi4_A 1479 ALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 1558 (1630)
T ss_pred HHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777765442222 22 26788766666 899999998776 3444555666666655443
Q ss_pred ----------HHHHHHHHcCChhHHHHHHHH
Q 040980 510 ----------YLRECSRKQGIVRDFVEYSLE 530 (1193)
Q Consensus 510 ----------~l~~Ca~~l~~~~~~v~~~le 530 (1193)
.|..|+..+ +++-.+..+|.
T Consensus 1559 ~~~~~E~f~a~Ly~cy~l~-~pd~vle~aw~ 1588 (1630)
T 1xi4_A 1559 QEEKRECFGACLFTCYDLL-RPDVVLETAWR 1588 (1630)
T ss_pred hcCChhHHHHHHHHHhccC-CchHHHHHHHH
Confidence 344555444 34555555554
No 192
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=39.90 E-value=62 Score=32.08 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
-..=|.+|...++.- ..--.+.+.+.+|.-|++.|||++|.+|++.++..
T Consensus 51 ~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 51 IRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345677777777642 11123456789999999999999999999988753
No 193
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=39.31 E-value=2.6e+02 Score=26.64 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=49.6
Q ss_pred cCceecCCCeEEEEEEEEcCCCceeEecEEEEEEecCCccEEEEcCCccccccccCCcccccCCCCceEeecCCeEEEEE
Q 040980 616 HEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTY 695 (1193)
Q Consensus 616 ~~~~~~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~l~p~~~~~~~~ 695 (1193)
.......|+.+.+.++++..=..+..=-++.+.+++.. + .. ....|.+|++..++|
T Consensus 25 ~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~----v-~t-------------------~~v~La~G~s~tv~f 80 (127)
T 3idu_A 25 GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTL----Y-KN-------------------WTVSLGPKEEKVLTF 80 (127)
T ss_dssp SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEE----E-EE-------------------EEEEECTTCEEEEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCEE----E-ee-------------------EEeccCCCCeEEEEE
Confidence 34567899999999999988877765444444443221 1 11 124588999999999
Q ss_pred EEeeccceEEEEEEE
Q 040980 696 EIKSEQSGKLECISV 710 (1193)
Q Consensus 696 ~~~~~~~g~~~v~~V 710 (1193)
...+...|.|.+..+
T Consensus 81 ~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 81 NWTPTQEGMYRINAT 95 (127)
T ss_dssp EECCSSCEEEEEEEE
T ss_pred EEEcCCCcEEEEEEE
Confidence 999888999966544
No 194
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.98 E-value=3.9e+02 Score=29.89 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHcc
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGI--VRDFVEYSLEMAA 533 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~--~~~~v~~~leLls 533 (1193)
+.+...-++.-|.+.++|+.|+.++..-+..+-+.|=..-..++..++++++.+.+- .++.+....+|++
T Consensus 34 AHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 34 AAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 555556677779999999999999999888888888889999999999999998863 3466666777775
No 195
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.66 E-value=1.1e+02 Score=32.78 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChh
Q 040980 443 EILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVR 522 (1193)
Q Consensus 443 ~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~ 522 (1193)
..+.++.++++.+.. ...+...+|..|...|+|++|..+|++++...... ..++..+..|+..+|+..
T Consensus 184 eA~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 184 DAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH------PETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCH
Confidence 345555555554322 23466789999999999999999999988655433 345666778888899876
Q ss_pred HH
Q 040980 523 DF 524 (1193)
Q Consensus 523 ~~ 524 (1193)
+-
T Consensus 252 ea 253 (291)
T 3mkr_A 252 EV 253 (291)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 196
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=38.39 E-value=51 Score=31.65 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 441 s~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
-..=|.||..-+.. +..-..+.+.+.||--||++|+|++|+++++.++..
T Consensus 54 ~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 54 IRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33445666554432 212245677889999999999999999999988753
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=37.81 E-value=3.1e+02 Score=27.11 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhc------CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-----hcCcHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH------KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYR-----QEGWVTLLWEVLGY 510 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~------~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr-----~egW~~L~~~~L~~ 510 (1193)
..-++...+|++.--.. ....+...+...+|..+..+|+|++|+..|++++..|- ...|.......+..
T Consensus 28 eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~ 107 (159)
T 2hr2_A 28 DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 107 (159)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHh
Confidence 34667777777655442 12223344778899999999999999999999987632 22233332223356
Q ss_pred HHHHHHHcCChhHHHHHHHHHcc
Q 040980 511 LRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 511 l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
.-.|+..+|+.++-+..--+.+.
T Consensus 108 rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 108 RALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 67788999999887776555543
No 198
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=37.59 E-value=95 Score=38.67 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|...|+|++|+.+|++++..--.. ...+..+..|+..+|+.++-+.+.-+.+.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45577888888888888888888876543221 34556677888888888877776666554
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=37.29 E-value=19 Score=40.13 Aligned_cols=67 Identities=7% Similarity=-0.059 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEG-----------WVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~eg-----------W~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
...+|..|+..|+|++|+.+|++++....... -..+...++..+..|+.++|+.++-+.++-+.+..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45889999999999999999999865432221 01122246778899999999999988888777653
No 200
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=36.67 E-value=60 Score=38.30 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 040980 447 LLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQ 494 (1193)
Q Consensus 447 LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~ 494 (1193)
-+..|.+.|...-...--......+|..|+..|++++|+.+|+++...
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 455666666664332222345567888888899999999888887643
No 201
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=36.06 E-value=1.9e+02 Score=25.86 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHH
Q 040980 444 ILGLLKKSCESYGNHKARRMGSF--------------------CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTL 503 (1193)
Q Consensus 444 ii~LL~kA~~~f~~~~~~R~~~~--------------------l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L 503 (1193)
..+-|.||++.|.-.+-.|+..| +...=|.-.|..++|..|+.+|+.+...-..+ |..-
T Consensus 12 y~eKl~KAYElYvfs~~~~F~~YV~kn~Lkel~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~-~i~k 90 (106)
T 2vkj_A 12 RMEKTLKAYELYIFSDYENFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNE-EIKK 90 (106)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHcCcchhhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCH-HHHH
Confidence 56778889998883333333322 22344678899999999999999987543333 4432
Q ss_pred HHHHHHHHHHHHHHc
Q 040980 504 LWEVLGYLRECSRKQ 518 (1193)
Q Consensus 504 ~~~~L~~l~~Ca~~l 518 (1193)
.. -..+-+|-+++
T Consensus 91 i~--~fyl~ec~kkl 103 (106)
T 2vkj_A 91 IA--SFYLEECRKKL 103 (106)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHh
Confidence 22 13455676655
No 202
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=35.99 E-value=62 Score=31.52 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCc-chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 040980 448 LKKSCESYGNHKA-RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQY 495 (1193)
Q Consensus 448 L~kA~~~f~~~~~-~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Y 495 (1193)
...|+..|.+.-. .---......+|..|...|++++|+.+|+++....
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 3556666655321 12235777889999999999999999999876543
No 203
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=33.75 E-value=73 Score=30.88 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=40.1
Q ss_pred hhhCcccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 432 IAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 432 l~~~~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
|...+.-+|-..=|.||..-++. . .-..+.+.+-||--|+++|||++|.++.+.++.
T Consensus 50 Lv~S~~~~d~~~GI~LLe~l~~~---~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 50 LIKSTDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHH---C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHhc---C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33334444455567777665542 1 223677888999999999999999999998764
No 204
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=33.58 E-value=94 Score=31.29 Aligned_cols=66 Identities=9% Similarity=-0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CcHH--------HHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQE--GWVT--------LLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~e--gW~~--------L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....|..++..|+|++|+.+|+++....... .|.. +...+...+..|+..+|+.+.-+...-+.+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999986543221 1211 1222333378899999999988887777665
No 205
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=33.47 E-value=83 Score=31.98 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
..+|..++..|++++|+.+|++++...-.. ...+..+..|+..+|+.++-+...-+.+
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666777777777776665432221 1233345555566666655555444444
No 206
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=33.24 E-value=86 Score=34.62 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
....+|..|...|++++|+.+|+++....... ......+..++.+.|+.++-+...-+++.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888999999999999999886543221 23555677888888888877776666664
No 207
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=33.05 E-value=3.1e+02 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=25.2
Q ss_pred eecCCCCCCCeEEEEEEEEEeC---CcceEEEEEEEecC
Q 040980 859 VSIPFLKSGESWSCKLEIKWHR---PKPVMLFVSLGYSP 894 (1193)
Q Consensus 859 i~v~~l~~ges~~~~l~i~~~~---~g~~~l~vsv~Y~~ 894 (1193)
..++.|++|++.. +.+.|.. .|.+.|.+.+...-
T Consensus 52 ~~v~~LaaG~s~t--v~~~w~~~~~~G~ytl~a~VD~~n 88 (114)
T 2l0d_A 52 QTVTSLESENSTN--VDFHWTLDGTANSYTLTVNVDPEN 88 (114)
T ss_dssp EEESCBCBTCEEE--EEEEEECCCSCSEEEEEEEECTTC
T ss_pred eecccccCCCEEE--EEEEEeecCcCceEEEEEEECCCC
Confidence 4566788999877 5566764 58899999997753
No 208
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.11 E-value=3.5e+02 Score=29.92 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHccC
Q 040980 464 GSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV--RDFVEYSLEMAAL 534 (1193)
Q Consensus 464 ~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~--~~~v~~~leLls~ 534 (1193)
+.+...-++.-|.+.++|+.|+.++..-+..+-+.|=+.-..++...+++++.+.+.. ++.+....++++.
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4444556777788999999999999998888777788888889999999999987665 5566667777753
No 209
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=31.32 E-value=87 Score=30.72 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=37.9
Q ss_pred cccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040980 436 KRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVAN 493 (1193)
Q Consensus 436 ~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~ 493 (1193)
+.-++-..=|.||+.-+.. . .-..+.+.+.||--||++|||++|.+|.+.++.
T Consensus 53 ~~~~di~~GI~LLe~l~~~---~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 53 TDVNDERLGVKILTDIYKE---A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SSHHHHHHHHHHHHHHHHH---C--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc---C--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3334445557777765552 1 113567788999999999999999999998764
No 210
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=30.74 E-value=49 Score=38.01 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=55.8
Q ss_pred ccCCCeEEEeecCCcee-eCCeEEEEEEEEcCCCce-EEEEEEEEeCCCe-EEeccC-CC-------cEEeCCCCeEEEE
Q 040980 1063 VELSPLVVSLECPPYAV-LGEPFTYTIKIWNQTKLL-QEVKFCVADAQSF-VLSGVH-ND-------TVFVLPKSKHILC 1131 (1193)
Q Consensus 1063 ~~~~pl~v~~~~P~~~~-vg~p~~~~~~I~N~T~~~-~~l~l~le~s~~F-~fsG~k-~~-------~l~llP~s~~~~~ 1131 (1193)
..+-||.+.+.+|-.+. -||++.+++.|.|+|... -.+.+.|..--.| ||+..+ .. .-.|.|+++..-.
T Consensus 189 ~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~k~~Va~~e~~e~V~pgst~~k~ 268 (392)
T 1suj_A 189 LSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETNDTVAANSTLSKT 268 (392)
T ss_dssp ETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCBCTTEEEEEE
T ss_pred ecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcEEEEEEEEecCCCcCCCCEEEEE
Confidence 56788899999986554 699999999999999977 4467777663222 343221 10 1157999999999
Q ss_pred EEEEECcc
Q 040980 1132 YKVVPLGS 1139 (1193)
Q Consensus 1132 ~~l~PL~~ 1139 (1193)
|.|.|+.+
T Consensus 269 ~~L~P~l~ 276 (392)
T 1suj_A 269 FSVTPMLA 276 (392)
T ss_dssp EEECCCGG
T ss_pred EEEecccc
Confidence 99999866
No 211
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=30.53 E-value=4e+02 Score=26.12 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=47.7
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC-CCcHHHHHHHHHHHcCCCCccEEEeC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDH-NDVYEERFIALRKRAELDSKYILTFN 168 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~-~~~~~eR~~~lr~~~~ld~k~lf~L~ 168 (1193)
..+++++|+. .|+.....+..-++.++......+..++ |++.+....+ .....+.+..+.+..++ .+|..+
T Consensus 86 ~~~~i~v~d~----~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S 157 (206)
T 2bov_A 86 GEGFLCVFSI----TEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRAEQWNV---NYVETS 157 (206)
T ss_dssp CSEEEEEEET----TCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTC---EEEEEC
T ss_pred CCEEEEEEEC----CCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccCccccccccHHHHHHHHHHhCC---eEEEEe
Confidence 4466668885 4565666666666677766655566554 4444422211 23445556666666664 255555
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 040980 169 PNTASDLQISLNRLASIFG 187 (1193)
Q Consensus 169 ~~~~~~l~~~v~~L~~~~~ 187 (1193)
......+......|...+.
T Consensus 158 a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4433444444444444433
No 212
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=28.61 E-value=4e+02 Score=25.55 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=48.7
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCCCCccEEEeC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAELDSKYILTFN 168 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~ld~k~lf~L~ 168 (1193)
..+++++|+. .|+...+.+..-++.+.......++.+++ +..+.... ......+.+..+.+..++. +|..+
T Consensus 90 ~d~~i~v~d~----~~~~s~~~~~~~~~~~~~~~~~~~~p~il-v~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~S 161 (183)
T 3kkq_A 90 GDGFLIVYSV----TDKASFEHVDRFHQLILRVKDRESFPMIL-VANKVDLMHLRKVTRDQGKEMATKYNIP---YIETS 161 (183)
T ss_dssp CSEEEEEEET----TCHHHHHTHHHHHHHHHHHHTSSCCCEEE-EEECTTCSTTCCSCHHHHHHHHHHHTCC---EEEEB
T ss_pred CCEEEEEEEC----CCHHHHHHHHHHHHHHHHhcCCCCCcEEE-EEECCCchhccCcCHHHHHHHHHHhCCe---EEEec
Confidence 4566778885 46655666666666666666656665543 34442222 2345667778888887743 55555
Q ss_pred CC-CchhHHHHHHHHHH
Q 040980 169 PN-TASDLQISLNRLAS 184 (1193)
Q Consensus 169 ~~-~~~~l~~~v~~L~~ 184 (1193)
.. ....+......|..
T Consensus 162 a~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp CSSSCBSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 44 22344444444433
No 213
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=28.44 E-value=1e+02 Score=37.96 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
+.+|..|+..|+|++|+..|++++..--.. ......+..|+.++|+.++ +...-+.+
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 445555555555555555555554332222 1223344555555555555 44433333
No 214
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=28.42 E-value=3.8e+02 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCCCCCeEEEEEEEEEe---CCcceEEEEEEEecC
Q 040980 863 FLKSGESWSCKLEIKWH---RPKPVMLFVSLGYSP 894 (1193)
Q Consensus 863 ~l~~ges~~~~l~i~~~---~~g~~~l~vsv~Y~~ 894 (1193)
.|+||++.. ....|. .+|.+++.+.+--+.
T Consensus 73 tl~pGE~~~--f~~~w~~~~~pG~Ytl~a~l~~~~ 105 (120)
T 3isy_A 73 TLESGETYD--FSDVWKEVPEPGTYEVKVTFKGRA 105 (120)
T ss_dssp EECTTCEEE--EEEEESSCCCSEEEEEEEEECCEE
T ss_pred EECCCCEEE--EEEEeCCCCCCccEEEEEEEEeee
Confidence 456999988 666676 356777777664443
No 215
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=1.6e+02 Score=27.73 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=39.0
Q ss_pred hhhHHhHHHH--------HHHHhhCHHHHHHHHHHHHHHHHHHhccCCCCC--CcccHHHHHHHHH
Q 040980 218 NIRYCFKVAV--------YAEFRRDWVEALRFYEDAYHMLREMIGTSTRLP--PIQRLVEIKTIAE 273 (1193)
Q Consensus 218 ~vR~~FK~a~--------~aEfr~d~~~Alk~Ye~AY~~L~e~~~~~~~~p--~~~r~~E~r~lad 273 (1193)
.||..+|.|| +.| .++-+.|+.+|+.+.+.|..=+....+.| ...-|.++|.+-+
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE-~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~ 78 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDE-LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQ 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 3666666665 234 58999999999999999987555444332 2567999998743
No 216
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=27.15 E-value=1.5e+02 Score=30.85 Aligned_cols=59 Identities=10% Similarity=-0.019 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHc
Q 040980 466 FCGFQMAVEYFA----LDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRK----QGIVRDFVEYSLEMA 532 (1193)
Q Consensus 466 ~l~~~lA~ey~~----~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~----l~~~~~~v~~~leLl 532 (1193)
.....+|..|.. .|++++|+.+|++++.. + .......+..|+.. .++.+.-+.+.-+.+
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 344556666666 66666666666665542 1 12334445555555 566555555444443
No 217
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.08 E-value=1e+02 Score=32.90 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 040980 468 GFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEY 527 (1193)
Q Consensus 468 ~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~ 527 (1193)
...+|..++..|+++.|+..|++++...-.. ...+..+..++...|+.++-+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHH
Confidence 3456666666666666666666655443322 13334455555555555554443
No 218
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=26.92 E-value=2.3e+02 Score=26.48 Aligned_cols=65 Identities=20% Similarity=0.071 Sum_probs=47.0
Q ss_pred cCCceeeCCeEEEEEEEEcCCCce---EEEEEEEEeCCCeEEeccCCCcE-EeCCCCeEEEEEEEEEC-cccceec
Q 040980 1074 CPPYAVLGEPFTYTIKIWNQTKLL---QEVKFCVADAQSFVLSGVHNDTV-FVLPKSKHILCYKVVPL-GSGLLQL 1144 (1193)
Q Consensus 1074 ~P~~~~vg~p~~~~~~I~N~T~~~---~~l~l~le~s~~F~fsG~k~~~l-~llP~s~~~~~~~l~PL-~~G~~~L 1144 (1193)
.|+....|++.+|+..|+|.-... ..+.+.++.. ...+ .++ .|.+|.+..+.|+..|. ..|...|
T Consensus 11 tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~---~v~t---~~v~~LaaG~s~tv~~~w~~~~~~G~ytl 80 (114)
T 2l0d_A 11 TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGI---VVDT---QTVTSLESENSTNVDFHWTLDGTANSYTL 80 (114)
T ss_dssp ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETTE---EEEE---EEESCBCBTCEEEEEEEEECCCSCSEEEE
T ss_pred cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECCE---EEcc---eecccccCCCEEEEEEEEeecCcCceEEE
Confidence 588899999999999999996643 5555554321 2221 144 57789999999999998 4787765
No 219
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=26.82 E-value=77 Score=35.02 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++++.+++.+++...++.-+|+||++.++ ++...-...-..-|+++|+++. .+-||..-
T Consensus 20 ~~~~~~v~~l~~~~~~~~P~Lavilvg~d--paS~~Yv~~k~k~~~~~Gi~~~-~~~lp~~~ 78 (300)
T 4a26_A 20 SELKDKVAALRELYGGRVPGLASIIVGQR--MDSKKYVQLKHKAAAEVGMASF-NVELPEDI 78 (300)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEEEESCC--HHHHHHHHHHHHHHHHTTCEEE-EEEECTTC
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCeEE-EEECCCCC
Confidence 35667788887765558899999999982 2222233344456667777654 44566543
No 220
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=26.32 E-value=4.1e+02 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=35.2
Q ss_pred CCeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCC
Q 040980 89 VPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAEL 159 (1193)
Q Consensus 89 vPsvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~l 159 (1193)
--.+++++|+. .|+.....+...+..++......++.++ ++..+.... ......+.+..+.+..+.
T Consensus 72 ~~~~~i~v~d~----~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 72 MGDAYVIVYSV----TDKGSFEKASELRVQLRRARQTDDVPII-LVGNKSDLVRSREVSVDEGRACAVVFDC 138 (166)
T ss_dssp -CCEEEEEEET----TCHHHHHHHHHHHHHHHHCC---CCCEE-EEEECTTCCSSCCSCHHHHHHHHHHTTC
T ss_pred hCCEEEEEEEC----CCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccccccccccCHHHHHHHHHHhCC
Confidence 34566778886 4565566666666666665544454443 334442222 234556666677776663
No 221
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=25.81 E-value=1e+02 Score=31.21 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=49.9
Q ss_pred eecCCceeeCCeEEEEEEEEcCCCce---EEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEE
Q 040980 1072 LECPPYAVLGEPFTYTIKIWNQTKLL---QEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136 (1193)
Q Consensus 1072 ~~~P~~~~vg~p~~~~~~I~N~T~~~---~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~P 1136 (1193)
++.......+..|.++++|+|+-+.. ..+.+.++-++-=+-+|.......|.++++..+...+.-
T Consensus 52 v~~~~~~l~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 52 VDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred eEEeccccceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 33333445678899999999997765 556777777666567899999999999999888876655
No 222
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=25.74 E-value=48 Score=33.10 Aligned_cols=52 Identities=10% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHH
Q 040980 442 YEILGLLKKSCESYGNH-KARRMGSFCGFQMAVEYFALD-----------DFNNAKQLFDGVAN 493 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~g-----------d~~~Al~~l~~~~~ 493 (1193)
...++++..|+..|.+. ...--.....+.+|..|+..| +|++|+.+|++++.
T Consensus 56 ~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 56 SDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 34667788888888874 111113344567888888774 89999999998764
No 223
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.35 E-value=36 Score=31.21 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=48.3
Q ss_pred eeeCCeEEEEEEEEcCCCceEEEEEEEEeC---CCeEEeccCCCcEEeCCCCeEEEEEEEEECccccee
Q 040980 1078 AVLGEPFTYTIKIWNQTKLLQEVKFCVADA---QSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQ 1143 (1193)
Q Consensus 1078 ~~vg~p~~~~~~I~N~T~~~~~l~l~le~s---~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~ 1143 (1193)
..+|++.+..+.|+|.......+.+..+.+ ..|-++ -..-.|.|+++..+...+.|-..|...
T Consensus 22 v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~---p~~g~i~pg~~~~i~V~f~~~~~g~f~ 87 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFS---PKEGIIEPSGVQAIQISFSSIILGNFE 87 (112)
T ss_dssp EESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEE---SSEEEECTTBCCEEEEEECCCCCEEEE
T ss_pred EEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEE---CCcCEECCCCEEEEEEEEECCCcceEE
Confidence 567999999999999999888877733212 126664 223489999999999999999888754
No 224
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=25.02 E-value=4.6e+02 Score=25.04 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=36.9
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAEL 159 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~l 159 (1193)
-.+++++|+. .|+...+.+...++.+...+...++.+++ ++.+.... ......+.+..+.+..+.
T Consensus 78 ~~~~i~v~d~----~~~~s~~~~~~~~~~~~~~~~~~~~p~il-v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 78 INGYILVYSV----TSIKSFEVIKVIHGKLLDMVGKVQIPIML-VGNKKDLHMERVISYEEGKALAESWNA 143 (181)
T ss_dssp CSEEEEEEET----TCHHHHHHHHHHHHHHHHHC----CCEEE-EEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred CCEEEEEEEC----CCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccchhcceecHHHHHHHHHHhCC
Confidence 3566778885 46666667766677777666655555443 33442222 234556777778877765
No 225
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=24.87 E-value=95 Score=30.60 Aligned_cols=59 Identities=14% Similarity=0.000 Sum_probs=47.1
Q ss_pred CCceeeCCeEEEEEEEEcCCCce---EEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEE
Q 040980 1075 PPYAVLGEPFTYTIKIWNQTKLL---QEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYK 1133 (1193)
Q Consensus 1075 P~~~~vg~p~~~~~~I~N~T~~~---~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~ 1133 (1193)
......+..|.++++|+|+-+.. ..+.+.++-++-=+-+|.......|.++++..+..-
T Consensus 32 ~~~~~~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 32 KDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CCCTTTEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred eccCcceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence 33344567899999999997755 778888887776677899998999999999877654
No 226
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=24.76 E-value=3.3e+02 Score=26.93 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=34.2
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAEL 159 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~l 159 (1193)
..+++++|+. .|+.....+..-++.++......++.++ |++.+.... ......+.+..+.+..+.
T Consensus 96 ~d~~i~v~d~----~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 96 VHGYVLVYSV----TSLHSFQVIESLYQKLHEGHGKTRVPVV-LVGNKADLSPEREVQAVEGKKLAESWGA 161 (201)
T ss_dssp CCEEEEEEET----TCHHHHHHHHHHHHHHHC-----CCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeC----CCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCccccccCHHHHHHHHHHhCC
Confidence 4566778886 3565555666666666655544555543 334442222 234455667777777765
No 227
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=23.99 E-value=3.1e+02 Score=26.74 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=42.5
Q ss_pred CCeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC-CCcHHHHHHHHHHHcCCCCccEEEe
Q 040980 89 VPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDH-NDVYEERFIALRKRAELDSKYILTF 167 (1193)
Q Consensus 89 vPsvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~-~~~~~eR~~~lr~~~~ld~k~lf~L 167 (1193)
-..+++++|+. .|+.....+..-++.++..+...+..++ |++.+..... .....+.+..+.+..++ .+|..
T Consensus 93 ~~d~iilv~D~----~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~ 164 (189)
T 1z06_A 93 NVHAVVFVYDM----TNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLRSAIQVPTDLAQKFADTHSM---PLFET 164 (189)
T ss_dssp TCCEEEEEEET----TCHHHHHTHHHHHHHHHHHCCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTC---CEEEC
T ss_pred CCCEEEEEEEC----cCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceeCHHHHHHHHHHcCC---EEEEE
Confidence 34577778885 4565555666667777777665666544 3344422211 23445566677776664 34444
Q ss_pred CCCC
Q 040980 168 NPNT 171 (1193)
Q Consensus 168 ~~~~ 171 (1193)
+..+
T Consensus 165 Sa~~ 168 (189)
T 1z06_A 165 SAKN 168 (189)
T ss_dssp CSSS
T ss_pred eCCc
Confidence 4433
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.94 E-value=2.7e+02 Score=34.12 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH------HHHHHhcC----cHHHHHHHHHH-----HHHHHHHcCChhHHHHHHHHHc
Q 040980 469 FQMAVEYFALDDFNNAKQLFDGV------ANQYRQEG----WVTLLWEVLGY-----LRECSRKQGIVRDFVEYSLEMA 532 (1193)
Q Consensus 469 ~~lA~ey~~~gd~~~Al~~l~~~------~~~Yr~eg----W~~L~~~~L~~-----l~~Ca~~l~~~~~~v~~~leLl 532 (1193)
.++|+.+.+.|+++.|.++|.++ ...|...| +..+....... +..|+.++|+.++-+....++-
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 58889999999999999999985 33444333 22222222222 5668888999998888877654
No 229
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=23.74 E-value=1.4e+02 Score=27.80 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=49.0
Q ss_pred EEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEe--CCCeEEecc-CC-CcEEeCCCCeEEEEE
Q 040980 1070 VSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVAD--AQSFVLSGV-HN-DTVFVLPKSKHILCY 1132 (1193)
Q Consensus 1070 v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~--s~~F~fsG~-k~-~~l~llP~s~~~~~~ 1132 (1193)
|.++-|.....+.-+.....|.|.+...+++.+++.- .++|-..+. .. .++.|.|+++..+.-
T Consensus 26 i~v~~~~~~~~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~ 92 (112)
T 3o0l_A 26 VDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTA 92 (112)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEE
T ss_pred EEEeCCEEEecCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEE
Confidence 3445566677889999999999999999999999998 677888876 44 345777777766543
No 230
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=23.47 E-value=89 Score=34.53 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
++++.+++.+|+.. ++.-+|+|||+.+. +....-...-..-|+++|+... ++-||...+
T Consensus 37 ~~l~~~v~~l~~~~-g~~P~LavIlVG~d--paS~~Yv~~K~k~c~~vGi~s~-~~~lp~~~s 95 (303)
T 4b4u_A 37 ENLLVRVEALKAKT-GRTPILATILVGDD--GASATYVRMKGNACRRVGMDSL-KIELPQETT 95 (303)
T ss_dssp HHHHHHHHHHHHHH-SCCCEEEEEEESCC--HHHHHHHHHHHHHHHHTTCEEE-EEEECTTCC
T ss_pred HHHHHHHHHHHHcC-CCCCcEEEEEeCCC--HHHHHHHHHHHHHHHHcCCeEE-EEecCccCC
Confidence 45677788887663 78899999999982 1111222344456666777654 456776544
No 231
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=23.31 E-value=1.2e+02 Score=37.37 Aligned_cols=79 Identities=8% Similarity=-0.065 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCc-chHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 448 LKKSCESYGNHKA-RRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 448 L~kA~~~f~~~~~-~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
..+|++.|.+.-. .---......+|..|+..|+|++ +.+|++++..-... ......+..|+.++|+.++-+.
T Consensus 483 ~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666665311 00012344688999999999999 99999987654332 2355678889999999998887
Q ss_pred HHHHHcc
Q 040980 527 YSLEMAA 533 (1193)
Q Consensus 527 ~~leLls 533 (1193)
..-+.+.
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 7766664
No 232
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.16 E-value=2.3e+02 Score=30.35 Aligned_cols=83 Identities=13% Similarity=-0.016 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Q 040980 442 YEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIV 521 (1193)
Q Consensus 442 ~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~ 521 (1193)
..-+..+.++.+..-. .....+..-....+...|++++|+.+|+++...+-.. ..++..+..|+.++|+.
T Consensus 147 ~~A~~~l~~~~~~~p~----~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 147 DLARKELKKMQDQDED----ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Confidence 3455666666655311 1111222122233445689999999999998775432 34566688899999999
Q ss_pred hHHHHHHHHHccC
Q 040980 522 RDFVEYSLEMAAL 534 (1193)
Q Consensus 522 ~~~v~~~leLls~ 534 (1193)
++-+...-+.+..
T Consensus 217 ~eA~~~l~~al~~ 229 (291)
T 3mkr_A 217 EAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9888888777753
No 233
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=22.61 E-value=92 Score=34.05 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCCc
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTA 172 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~~ 172 (1193)
++++.+++.+++. ++.-+|++|++.+ .+....-...-..-|.++|+.+. ++-||...+
T Consensus 17 ~~~~~~v~~l~~~--g~~P~Lavilvg~--dpas~~Yv~~k~k~~~~~Gi~~~-~~~lp~~~s 74 (281)
T 2c2x_A 17 GDLKQRVAALDAA--GRTPGLGTILVGD--DPGSQAYVRGKHADCAKVGITSI-RRDLPADIS 74 (281)
T ss_dssp HHHHHHHHHHHHT--TCCCEEEEEEESC--CHHHHHHHHHHHHHHHHHTCEEE-EEEECTTCC
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEeCC--ChhhHHHHHHHHHHHHHcCCEEE-EEECCCCCC
Confidence 3566778888765 5778999999988 22222223344456777888665 456776543
No 234
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=22.44 E-value=4.8e+02 Score=24.40 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=47.2
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCCCCccEEEeC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAELDSKYILTFN 168 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~ld~k~lf~L~ 168 (1193)
..+++++|+. .|+.....+...+..++......++.+++ +..+.... ......+.+..+.+..+. .+|..+
T Consensus 76 ~d~~i~v~d~----~~~~s~~~~~~~~~~~~~~~~~~~~p~il-v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S 147 (169)
T 3q85_A 76 GDAFLIVFSV----TDRRSFSKVPETLLRLRAGRPHHDLPVIL-VGNKSDLARSREVSLEEGRHLAGTLSC---KHIETS 147 (169)
T ss_dssp CSEEEEEEET----TCHHHHHTHHHHHHHHHHHSTTSCCCEEE-EEECTTCGGGCCSCHHHHHHHHHHTTC---EEEECB
T ss_pred CCEEEEEEEC----CChHHHHHHHHHHHHHHhcccCCCCCEEE-EeeCcchhhcccCCHHHHHHHHHHcCC---cEEEec
Confidence 4577778986 45666667777777777665544554443 34442222 234556677777777765 244444
Q ss_pred CCCchhHHHHHHHHH
Q 040980 169 PNTASDLQISLNRLA 183 (1193)
Q Consensus 169 ~~~~~~l~~~v~~L~ 183 (1193)
......+......|.
T Consensus 148 a~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 148 AALHHNTRELFEGAV 162 (169)
T ss_dssp TTTTBSHHHHHHHHH
T ss_pred CccCCCHHHHHHHHH
Confidence 333234444333333
No 235
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=22.30 E-value=1.7e+02 Score=31.18 Aligned_cols=58 Identities=12% Similarity=0.000 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 040980 467 CGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528 (1193)
Q Consensus 467 l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~ 528 (1193)
....+|..|...|++++|+..|++++..... |. .......+..++..+|+.++-+...
T Consensus 221 ~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~--~~--~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 221 LATQLALQLHQVGRNEEALELLFGHLRXDLT--AA--DGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--GG--GGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcccc--cc--cchHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568899999999999999999998764322 21 1245566777888888876555443
No 236
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.69 E-value=2.3e+02 Score=29.17 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCChhHHHHHHHHHc
Q 040980 467 CGFQMAVEYFA----LDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRK----QGIVRDFVEYSLEMA 532 (1193)
Q Consensus 467 l~~~lA~ey~~----~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~----l~~~~~~v~~~leLl 532 (1193)
....+|..|.. .|++++|+.+|++++.. + .......+-.++.. .++.+.-+.+.-+.+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 33455555555 66666666666655432 1 12344445555555 565555555444444
No 237
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=21.10 E-value=1.1e+02 Score=33.49 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++++.+++.+++.- ++.-+|++|++.+. +....-...-..-|+++|++.. .+-||...
T Consensus 18 ~~~~~~v~~l~~~~-~~~P~Lavilvg~d--paS~~Yv~~k~k~~~~~Gi~~~-~~~lp~~~ 75 (285)
T 3l07_A 18 ERLATQVQEYKHHT-AITPKLVAIIVGND--PASKTYVASKEKACAQVGIDSQ-VITLPEHT 75 (285)
T ss_dssp HHHHHHHHHHHHHH-CCCCEEEEEEESCC--HHHHHHHHHHHHHHHHHTCEEE-EEEECTTC
T ss_pred HHHHHHHHHHHhcC-CCCceEEEEEECCC--HHHHHHHHHHHHHHHHcCCeEE-EEECCCCC
Confidence 35667788887653 68899999999982 2111222445567777888665 44566543
No 238
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.05 E-value=1.1e+02 Score=33.60 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCcHHHHHHHHHHHcCCCCccEEEeCCCC
Q 040980 110 LQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNT 171 (1193)
Q Consensus 110 ~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~~~~~~eR~~~lr~~~~ld~k~lf~L~~~~ 171 (1193)
++++.+++.+++. .++.-+|++|++.+. +....-...-..-|+++|+++. .+-||...
T Consensus 19 ~~~~~~v~~l~~~-~~~~P~Lavilvg~d--paS~~Yv~~k~k~~~~~Gi~~~-~~~lp~~~ 76 (286)
T 4a5o_A 19 QQIAQRVTERRQQ-GLRVPGLAVILVGTD--PASQVYVAHKRKDCEEVGFLSQ-AYDLPAET 76 (286)
T ss_dssp HHHHHHHHHHHHT-TCCCCEEEEEEESCC--HHHHHHHHHHHHHHHHTTCEEE-EEEECTTC
T ss_pred HHHHHHHHHHHhc-CCCCceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCeEE-EEECCCCC
Confidence 3566777777765 367799999999982 2111223444456677777664 44566543
No 239
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=20.67 E-value=51 Score=38.68 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccC
Q 040980 470 QMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534 (1193)
Q Consensus 470 ~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~ 534 (1193)
.+|..|+..|+|++|+.+|+++....... ..++..+..|+.++|+.++-+...-+.+..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45777889999999999999998765443 456677889999999999888887777654
No 240
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=20.65 E-value=2.4e+02 Score=30.71 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=36.5
Q ss_pred HHHHHHHhhcC--cchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcH-HH-HHHHHHHHHHHHHHcCChhHH
Q 040980 449 KKSCESYGNHK--ARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWV-TL-LWEVLGYLRECSRKQGIVRDF 524 (1193)
Q Consensus 449 ~kA~~~f~~~~--~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~-~L-~~~~L~~l~~Ca~~l~~~~~~ 524 (1193)
..|.+.|.... ..... ..+.+|..|+..|+|+.|+.+|+++. .|. .+ ...+..++-.++..+|+.++-
T Consensus 119 ~eA~~~l~~~~~~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~------~~~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAG------KWPDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp HHHHHHHTSSCCTTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGG------GCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhh------ccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 44555555432 22222 44556666666666666666665332 122 11 123444455555556655555
Q ss_pred HHHHHHH
Q 040980 525 VEYSLEM 531 (1193)
Q Consensus 525 v~~~leL 531 (1193)
+.+--+.
T Consensus 191 l~~l~~a 197 (282)
T 4f3v_A 191 ERRLTEA 197 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 241
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.45 E-value=1e+02 Score=34.95 Aligned_cols=79 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc-CcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHH
Q 040980 448 LKKSCESYGNH-KARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVE 526 (1193)
Q Consensus 448 L~kA~~~f~~~-~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~ 526 (1193)
+..|++.|.+. ...---..+...+|..|...|+|++|+.+|++++..--+. ......+..|+..+|+.++-+.
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHH
Q ss_pred HHHHHc
Q 040980 527 YSLEMA 532 (1193)
Q Consensus 527 ~~leLl 532 (1193)
+.-+++
T Consensus 222 ~~~~al 227 (382)
T 2h6f_A 222 YVDQLL 227 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 242
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=20.39 E-value=5.4e+02 Score=24.17 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=37.5
Q ss_pred hhhhhhhhccCCeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC-CCcHHHHHHHHHHHc
Q 040980 79 RDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDH-NDVYEERFIALRKRA 157 (1193)
Q Consensus 79 ~~W~~Kh~~~vPsvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~~-~~~~~eR~~~lr~~~ 157 (1193)
..|+.++.-....+++++|+. .|+.....+..-+..++......+.. ++|+..+....+ .....+.+..+.+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~----~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~ 141 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSI----ADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSVEEGRACAVVF 141 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEET----TCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCHHHHHHHHHHH
T ss_pred hhhhHHhhcccCCEEEEEEEC----CCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCHHHHHHHHHHc
Confidence 567776665556777888986 35655555554445555443333444 334444422222 234444455555555
Q ss_pred C
Q 040980 158 E 158 (1193)
Q Consensus 158 ~ 158 (1193)
+
T Consensus 142 ~ 142 (175)
T 2nzj_A 142 D 142 (175)
T ss_dssp T
T ss_pred C
Confidence 5
No 243
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=20.30 E-value=5.2e+02 Score=23.91 Aligned_cols=73 Identities=10% Similarity=0.065 Sum_probs=40.1
Q ss_pred eEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCCCCccEEEeCC
Q 040980 91 SVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAELDSKYILTFNP 169 (1193)
Q Consensus 91 svvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~ld~k~lf~L~~ 169 (1193)
.+++++|+. .|+.....+...++.+.......+..++ |++.+.... ......+.+..+.+..++ .+|..+.
T Consensus 76 ~~~i~v~d~----~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa 147 (167)
T 1kao_A 76 QGFILVYSL----VNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLESEREVSSSEGRALAEEWGC---PFMETSA 147 (167)
T ss_dssp SEEEEEEET----TCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTS---CEEEECT
T ss_pred CEEEEEEeC----CCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcccccccCCHHHHHHHHHHhCC---CEEEecC
Confidence 456668885 4565555666666666666655565544 444442211 223445566667766664 2555554
Q ss_pred CC
Q 040980 170 NT 171 (1193)
Q Consensus 170 ~~ 171 (1193)
..
T Consensus 148 ~~ 149 (167)
T 1kao_A 148 KS 149 (167)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 244
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=20.18 E-value=3.7e+02 Score=29.18 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHcc
Q 040980 465 SFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWV--TLLWEVLGYLRECSRKQGIVRDFVEYSLEMAA 533 (1193)
Q Consensus 465 ~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~--~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls 533 (1193)
..+.+-++..+..+|++++|+.+|+++.. |-. ..........-.|.+++|+.++-...-=++++
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677888999999999999999999862 211 11446777788899999999888877666665
No 245
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=20.09 E-value=5.6e+02 Score=24.28 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=43.4
Q ss_pred CeEEEEEeeCCCCCCChhhHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC-CCCcHHHHHHHHHHHcCCCCccEEEeC
Q 040980 90 PSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSD-HNDVYEERFIALRKRAELDSKYILTFN 168 (1193)
Q Consensus 90 Psvvv~f~~~d~~~~d~~~~~~l~s~i~~lr~~l~~r~~kl~VVlv~~~~~~-~~~~~~eR~~~lr~~~~ld~k~lf~L~ 168 (1193)
..+++++|+. .|+.....+..-++.++......+..++| ++.+.... ......+.+..+.+..++ .+|..+
T Consensus 90 ~d~~i~v~d~----~~~~s~~~~~~~~~~i~~~~~~~~~piil-v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~S 161 (187)
T 2a9k_A 90 GEGFLCVFSI----TEMESFAATADFREQILRVKEDENVPFLL-VGNKSDLEDKRQVSVEEAKNRAEQWNV---NYVETS 161 (187)
T ss_dssp CSEEEEEEET----TCHHHHHHHHHHHHHHHHHHCCTTCCEEE-EEECGGGGGGCCSCHHHHHHHHHHTTC---EEEECC
T ss_pred CCEEEEEEEC----cCHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEECccccccCccCHHHHHHHHHHcCC---eEEEeC
Confidence 4466678885 45656666666667777776656666544 44442211 123444556666666554 244444
Q ss_pred CCCchhHHHHH
Q 040980 169 PNTASDLQISL 179 (1193)
Q Consensus 169 ~~~~~~l~~~v 179 (1193)
......+....
T Consensus 162 a~~~~gi~~l~ 172 (187)
T 2a9k_A 162 AKTRANVDKVF 172 (187)
T ss_dssp TTTCTTHHHHH
T ss_pred CCCCCCHHHHH
Confidence 33323333333
Done!