Query 040981
Match_columns 211
No_of_seqs 154 out of 1442
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 1.1E-52 2.5E-57 340.3 19.3 209 1-210 14-227 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 4.6E-50 9.9E-55 336.0 20.8 210 1-210 57-274 (296)
3 PLN00182 putative aquaporin NI 100.0 9.2E-49 2E-53 326.3 20.9 209 1-209 45-254 (283)
4 COG0580 GlpF Glycerol uptake f 100.0 1.9E-48 4.1E-53 314.8 19.1 210 1-210 8-241 (241)
5 PLN00026 aquaporin NIP; Provi 100.0 2.5E-48 5.4E-53 325.0 19.3 208 1-209 74-282 (298)
6 PRK05420 aquaporin Z; Provisio 100.0 1.1E-47 2.3E-52 313.1 22.2 210 1-211 5-230 (231)
7 PTZ00016 aquaglyceroporin; Pro 100.0 1.1E-46 2.3E-51 316.4 21.2 211 1-211 53-292 (294)
8 PLN00166 aquaporin TIP2; Provi 100.0 3.9E-46 8.5E-51 306.6 20.8 209 1-209 21-237 (250)
9 PF00230 MIP: Major intrinsic 100.0 5.8E-47 1.3E-51 309.1 15.5 204 1-204 11-227 (227)
10 PLN00027 aquaporin TIP; Provis 100.0 5.5E-46 1.2E-50 306.7 19.6 209 1-209 23-239 (252)
11 PLN00167 aquaporin TIP5; Provi 100.0 1.8E-45 3.9E-50 303.5 21.4 210 1-210 25-241 (256)
12 KOG0224 Aquaporin (major intri 100.0 8.7E-47 1.9E-51 308.5 12.7 211 1-211 35-277 (316)
13 PLN00183 putative aquaporin NI 100.0 4.4E-45 9.6E-50 303.2 19.4 209 1-210 48-257 (274)
14 cd00333 MIP Major intrinsic pr 100.0 5.7E-44 1.2E-48 291.6 19.5 207 1-207 3-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 5.7E-42 1.2E-46 277.6 18.9 202 3-204 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 5.4E-17 1.2E-21 136.3 6.6 100 111-210 68-173 (298)
17 PLN00184 aquaporin NIP1; Provi 99.7 8.9E-17 1.9E-21 135.2 6.6 98 112-209 52-155 (296)
18 PLN00183 putative aquaporin NI 99.7 1.6E-16 3.5E-21 132.4 6.6 106 104-209 32-146 (274)
19 PLN00167 aquaporin TIP5; Provi 99.6 1.7E-15 3.6E-20 125.4 7.4 98 112-209 20-128 (256)
20 PLN00166 aquaporin TIP2; Provi 99.6 1.3E-15 2.8E-20 125.7 5.9 99 111-209 15-124 (250)
21 PLN00182 putative aquaporin NI 99.6 2.5E-15 5.3E-20 125.8 5.9 98 112-209 40-143 (283)
22 PRK05420 aquaporin Z; Provisio 99.6 7.2E-15 1.6E-19 120.1 6.9 96 114-209 2-104 (231)
23 PTZ00016 aquaglyceroporin; Pro 99.5 5.8E-15 1.3E-19 124.4 6.0 99 112-210 48-152 (294)
24 PLN00027 aquaporin TIP; Provis 99.5 9.7E-15 2.1E-19 120.8 7.2 98 112-209 18-126 (252)
25 cd00333 MIP Major intrinsic pr 99.5 4.5E-15 9.7E-20 121.3 4.9 96 115-210 1-103 (228)
26 KOG0224 Aquaporin (major intri 99.5 1.4E-14 3.1E-19 119.4 5.7 99 112-210 30-135 (316)
27 TIGR00861 MIP MIP family chann 99.4 9.3E-14 2E-18 112.6 5.1 92 119-210 1-103 (216)
28 COG0580 GlpF Glycerol uptake f 99.4 1.5E-13 3.2E-18 111.8 5.6 98 113-210 4-110 (241)
29 KOG0223 Aquaporin (major intri 99.4 1E-12 2.2E-17 107.1 6.2 100 111-210 8-113 (238)
30 PF00230 MIP: Major intrinsic 99.3 9E-13 1.9E-17 107.5 3.4 99 112-210 6-116 (227)
31 COG2116 FocA Formate/nitrite f 89.8 4.2 9.1E-05 34.0 9.6 175 30-211 64-260 (265)
32 PRK11562 nitrite transporter N 75.9 46 0.001 27.9 11.7 98 34-134 62-171 (268)
33 PRK10805 formate transporter; 73.3 53 0.0011 27.8 10.1 97 34-134 72-182 (285)
34 PF01226 Form_Nir_trans: Forma 66.9 36 0.00078 28.1 7.7 99 33-134 60-171 (250)
35 PRK09713 focB putative formate 60.1 96 0.0021 26.2 9.1 97 34-134 71-181 (282)
36 PF03033 Glyco_transf_28: Glyc 57.7 3.9 8.4E-05 29.8 0.3 20 51-70 7-26 (139)
37 TIGR00790 fnt formate/nitrite 50.3 1.4E+02 0.003 24.4 10.0 77 57-133 68-157 (239)
38 PRK12446 undecaprenyldiphospho 45.2 9.9 0.00021 32.9 0.9 21 48-68 7-27 (352)
39 PF02537 CRCB: CrcB-like prote 37.9 1.5E+02 0.0032 21.1 6.0 110 83-203 5-114 (117)
40 PRK14195 camphor resistance pr 33.0 1.8E+02 0.004 21.2 5.9 107 82-204 7-117 (125)
41 PRK14206 camphor resistance pr 28.2 2.4E+02 0.0052 20.6 6.9 107 83-203 7-117 (127)
42 PRK14218 camphor resistance pr 27.7 2.6E+02 0.0055 20.8 6.8 106 83-204 14-123 (133)
43 PF04632 FUSC: Fusaric acid re 26.3 5.3E+02 0.012 24.0 13.7 42 58-99 372-413 (650)
44 PF14034 Spore_YtrH: Sporulati 26.3 1.5E+02 0.0033 21.1 4.2 46 53-98 53-100 (102)
45 PRK09979 putative rho operon l 22.7 32 0.00069 18.4 0.2 15 49-63 4-18 (33)
46 PF09622 DUF2391: Putative int 22.5 2.7E+02 0.0058 23.4 5.7 67 63-129 82-156 (267)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=340.32 Aligned_cols=209 Identities=39% Similarity=0.732 Sum_probs=190.9
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccc-cCCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKI-YGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++++|.+|++...+.+ .+..+.+.+++.+|+.+++.++.++++||||+|||||+++++.||+++.+++.|+
T Consensus 14 ~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~ 93 (238)
T KOG0223|consen 14 LIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYI 93 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHH
Confidence 478999999999999999887774 3366788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccC----ccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHH
Q 040981 80 VAQVVGSLLASGTLSLMLDVT----PQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIML 155 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~ 155 (211)
.+|++|+++|+.+++.+.+++ ........|+.+..|+++.|++.||.|+++++...+|+|+. .+.|+.+|+.+.+
T Consensus 94 vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~a~l~IG~~v~~ 172 (238)
T KOG0223|consen 94 VAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-ELAPLAIGFSVGL 172 (238)
T ss_pred HHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-ccHHHHHHHHHHH
Confidence 999999999999999998864 11222345667899999999999999999999977887765 8999999999999
Q ss_pred HHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 156 NVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 156 ~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
.++..+++||++|||||+|||++..++|++||+||++|++|+++++++||+++.+
T Consensus 173 ~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~ 227 (238)
T KOG0223|consen 173 NILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIP 227 (238)
T ss_pred HHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999865
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=4.6e-50 Score=336.05 Aligned_cols=210 Identities=50% Similarity=0.999 Sum_probs=184.6
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccC-CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIYG-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++|+|++|++...+...+ ..++..++++||+++.+.+++++++||+|+|||||++.++.|+++|++.+.|+
T Consensus 57 ~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~Yi 136 (296)
T PLN00184 57 LIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYV 136 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHH
Confidence 47899999999999998875443322 34577789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcc-------ccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHH
Q 040981 80 VAQVVGSLLASGTLSLMLDVTPQ-------AYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMT 152 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~~~-------~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~ 152 (211)
++|++|+++|+.+++.+++.... ...++.|..+.+++++.|+++|++|+++++.+.+|++..+...++.+|+.
T Consensus 137 iaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~~~l~IG~~ 216 (296)
T PLN00184 137 ISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGST 216 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcchHHHHHHH
Confidence 99999999999999988853221 12234566688999999999999999999998666665556889999999
Q ss_pred HHHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 153 IMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 153 v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+.+.++..+++||+++||||||||+++...|+++|+||++|++|+++++++|++++..
T Consensus 217 v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~ 274 (296)
T PLN00184 217 VLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYT 274 (296)
T ss_pred HHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999753
No 3
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=9.2e-49 Score=326.33 Aligned_cols=209 Identities=71% Similarity=1.262 Sum_probs=185.4
Q ss_pred ChhHHHHHHHHHHHHhhhhhhcccc-CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIY-GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++|+|.++++...+... +..+...++++||+.+.+.+++++++||||+|||||++.++.|+++|++.+.|+
T Consensus 45 ~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi 124 (283)
T PLN00182 45 LIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYI 124 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799999999999999876643322 223456678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHH
Q 040981 80 VAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFV 159 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 159 (211)
++|++|+++|+++++.+++.......++.|+.+.+++++.|+++|++|+++++...++++..+...++.+|+.+.+.++.
T Consensus 125 ~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~~~~~~l~iGl~V~~~~~~ 204 (283)
T PLN00182 125 GAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFV 204 (283)
T ss_pred HHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccCCcchhHHHHHHHHHHHHH
Confidence 99999999999999998865444556677878889999999999999999999876665554556899999999999999
Q ss_pred hcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 160 AGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 160 ~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
.+++||+++||||+|+++++.++|+++|+||++|++|+++++++|+++..
T Consensus 205 ~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 205 AGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred ccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999989999999999999999999999999874
No 4
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=314.82 Aligned_cols=210 Identities=37% Similarity=0.649 Sum_probs=182.3
Q ss_pred ChhHHHHHHHHHHHHhhhhhhcc--c--cCCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchh
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDK--I--YGKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVP 76 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~--~--~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~ 76 (211)
+++||+||+++++.++++..... . +...++..++++||+++.+.+++++++||+|+|||||+++.+.||++|++.+
T Consensus 8 ~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~ 87 (241)
T COG0580 8 LLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVL 87 (241)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCHHHHH
Confidence 37899999999999998876433 1 2256778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc----------ccccccccC-CchhHHHHHHHHHHHHHHHHhhheecCCcCCCch
Q 040981 77 LYIVAQVVGSLLASGTLSLMLDVTPQ----------AYFGTVPVG-SNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFG 145 (211)
Q Consensus 77 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~----------~~~~~~p~~-s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~ 145 (211)
.|+++|++||++|+.+++.++++... ..+++.|.. +..++++.|+++|++|++.++...+|++.++...
T Consensus 88 ~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~~~~~a 167 (241)
T COG0580 88 PYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNANAGFA 167 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcccccch
Confidence 99999999999999999998864322 223366653 6788999999999999999999876665533599
Q ss_pred hHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc---------cCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 146 GVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH---------KFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 146 ~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~---------~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
|+.+|+.+..+.+..++.||..+|||||+|||+... +.+|.|+||++|++|+++++++|+.++.+
T Consensus 168 pl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~~ 241 (241)
T COG0580 168 PLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLGR 241 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999653 22589999999999999999999987753
No 5
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=2.5e-48 Score=324.96 Aligned_cols=208 Identities=44% Similarity=0.773 Sum_probs=182.7
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccC-CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIYG-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++|+|++++....+.+.+ ..++..+++++|+++.+.+++++++||||+|||||++.++.++++|++.+.|+
T Consensus 74 ~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~Yi 153 (298)
T PLN00026 74 LGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYI 153 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHH
Confidence 47899999999999987655443322 23566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHH
Q 040981 80 VAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFV 159 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 159 (211)
++|++|+++|+++++.++++.... ..+.|+.+..++++.|+++|++|+++++.+.+|+|..+...++.+|+.+.+.++.
T Consensus 154 iaQilGAi~aa~~~~~~~~~~~~~-g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V~~~~l~ 232 (298)
T PLN00026 154 AAQVSASICASFALKGVFHPFMSG-GVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILV 232 (298)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC-ceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccchHHHHHHHHHHHH
Confidence 999999999999999988643211 1256777889999999999999999999876666555567889999999999999
Q ss_pred hcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 160 AGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 160 ~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
.+++||+++||||||+|+++.++|+++|+||++|++|+++++++|+++..
T Consensus 233 ~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~ 282 (298)
T PLN00026 233 AGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKL 282 (298)
T ss_pred hcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999853
No 6
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.1e-47 Score=313.10 Aligned_cols=210 Identities=32% Similarity=0.639 Sum_probs=178.4
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccc-c-CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKI-Y-GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLY 78 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~y 78 (211)
+++||+||++++|+++++...... + +..+...+++++|+.+.+.+++++++||+|+|||||++.++.|++++++.+.|
T Consensus 5 ~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y 84 (231)
T PRK05420 5 LAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPY 84 (231)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHH
Confidence 478999999999999987654321 1 12346667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcc-c-----c-----cccccc-CCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchh
Q 040981 79 IVAQVVGSLLASGTLSLMLDVTPQ-A-----Y-----FGTVPV-GSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGG 146 (211)
Q Consensus 79 i~aQ~~Ga~~g~~~~~~~~~~~~~-~-----~-----~~~~p~-~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~ 146 (211)
+++|++|+++|+.+++.++++..+ . . ..+.|. .+..++++.|+++|++|+++++...+ +|+.+...|
T Consensus 85 ~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~-~~~~~~~~p 163 (231)
T PRK05420 85 IIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATD-KRAPAGFAP 163 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcchH
Confidence 999999999999999988754321 0 0 112333 26789999999999999999998744 444456789
Q ss_pred HHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhccC--CceeeeeechhHHHHHHHHHHHhhhcCC
Q 040981 147 VAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKF--RGIWLYIIGPVIGTVTGGFAYNLIKIHG 211 (211)
Q Consensus 147 ~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~--~~~~vy~v~p~~Ga~la~~~~~~~~~~~ 211 (211)
+.+|+.+....+..+++||+++||||||||+++.++| +++|+||++|++|+++++++||+++.|+
T Consensus 164 ~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 164 IAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred HHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999998655 5899999999999999999999998764
No 7
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.1e-46 Score=316.43 Aligned_cols=211 Identities=29% Similarity=0.545 Sum_probs=178.4
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccC-CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIYG-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++++|+++++.......+ ..+...+++++|+++.+.+++++++||+|+|||||++.++.|++++++.+.|+
T Consensus 53 ~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~Yi 132 (294)
T PTZ00016 53 YVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYF 132 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHH
Confidence 47999999999999998765432222 34466788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcc-----------------ccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcC-
Q 040981 80 VAQVVGSLLASGTLSLMLDVTPQ-----------------AYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAI- 141 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~~~-----------------~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~- 141 (211)
++|++|+++|++++|.++++..+ ..+.+.|+.+..++++.|+++|++|+++++...+++++.
T Consensus 133 iaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~d~~~~~~ 212 (294)
T PTZ00016 133 VAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAITDPNNCPA 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHhccCccCCC
Confidence 99999999999999998764210 122355666788999999999999999999985544432
Q ss_pred CCchhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhh------ccCC----ceeeeeechhHHHHHHHHHHHhhhcCC
Q 040981 142 GQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVK------HKFR----GIWLYIIGPVIGTVTGGFAYNLIKIHG 211 (211)
Q Consensus 142 ~~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~------~~~~----~~~vy~v~p~~Ga~la~~~~~~~~~~~ 211 (211)
....|+.+|+.+.+..+..+++||+++||||||||+++. ..|+ ++|+||++|++|+++++++|+++..++
T Consensus 213 ~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 213 FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 346799999999999999999999999999999999996 2343 689999999999999999999998653
No 8
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=3.9e-46 Score=306.65 Aligned_cols=209 Identities=32% Similarity=0.561 Sum_probs=179.2
Q ss_pred ChhHHHHHHHHHHHHhhhhhhc-c-c--c--CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccc
Q 040981 1 MIAELIGTYFIIFAGCGAVAVD-K-I--Y--GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQ 74 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~-~-~--~--~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~ 74 (211)
+++||+||++++|.++++.... . . . +..++..+++.+|+.+.+.+++++++||+|+|||+|++.++.|++++.+
T Consensus 21 ~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~ 100 (250)
T PLN00166 21 YLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITIIT 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHH
Confidence 4689999999999999876531 1 1 1 1234566789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCc--CCCchhHHHHHH
Q 040981 75 VPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRA--IGQFGGVAVGMT 152 (211)
Q Consensus 75 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~--~~~~~~~~ig~~ 152 (211)
.+.|+++|++|+++|+.+.+.+++++.....+..++.+..++++.|+++|++|+++++...+|+|+ .+...|+.+|+.
T Consensus 101 ~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~ 180 (250)
T PLN00166 101 GFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFI 180 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHH
Confidence 999999999999999999988876432222223345678899999999999999999987665543 235789999999
Q ss_pred HHHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 153 IMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 153 v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+...++..+++||+++||||+|||+++.++|+++|+||++|++|+++++++||.+..
T Consensus 181 v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~ 237 (250)
T PLN00166 181 VGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFI 237 (250)
T ss_pred HHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988753
No 9
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=5.8e-47 Score=309.06 Aligned_cols=204 Identities=35% Similarity=0.715 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHHHHHhhhhhh-ccccC------CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCcccc
Q 040981 1 MIAELIGTYFIIFAGCGAVAV-DKIYG------KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWR 73 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~-~~~~~------~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~ 73 (211)
+++||+||++++|+++++... +...+ ..+...+++.+|+.+.+.++.++++||+|+||+||++.++.||++++
T Consensus 11 ~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~g~~~~~ 90 (227)
T PF00230_consen 11 FLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALTGRISWK 90 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeeeeeeccc
Confidence 479999999999999886542 22211 13566788999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccC--cccccc--ccccCCchhHHHHHHHHHHHHHHHHhhheecCCcC--CCchhH
Q 040981 74 QVPLYIVAQVVGSLLASGTLSLMLDVT--PQAYFG--TVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAI--GQFGGV 147 (211)
Q Consensus 74 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~--~~~~~~--~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~--~~~~~~ 147 (211)
+.+.|+++|++|+++|+.+++.++++. ...... +.|+.+..++++.|+++|++++++++...+|+|+. +...|+
T Consensus 91 ~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~~~~~~p~ 170 (227)
T PF00230_consen 91 KAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKFPLGPLAPL 170 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSSTSSGGHHH
T ss_pred ceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccccccccccce
Confidence 999999999999999999999998763 222233 33455889999999999999999999986666543 346899
Q ss_pred HHHHHHHHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHH
Q 040981 148 AVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAY 204 (211)
Q Consensus 148 ~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~ 204 (211)
.+|+.+....+..+++||+++||||+++++++...|+++|+||++|++|+++|+++|
T Consensus 171 ~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 171 AIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999987
No 10
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=5.5e-46 Score=306.66 Aligned_cols=209 Identities=30% Similarity=0.472 Sum_probs=181.0
Q ss_pred ChhHHHHHHHHHHHHhhhhhhc----ccc-C-CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccc
Q 040981 1 MIAELIGTYFIIFAGCGAVAVD----KIY-G-KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQ 74 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~----~~~-~-~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~ 74 (211)
+++||+||+++++.++++.... .+. + ..+.+.+++++|+.+.+.+++.+++||+|+|||+|++.++.|++++.+
T Consensus 23 ~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~ 102 (252)
T PLN00027 23 ALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLR 102 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCCCCHHH
Confidence 4689999999999999876421 111 1 234556899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCc--CCCchhHHHHHH
Q 040981 75 VPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRA--IGQFGGVAVGMT 152 (211)
Q Consensus 75 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~--~~~~~~~~ig~~ 152 (211)
.+.|+++|++|+++|+.+.+...++.......+.|+.+.+++++.|+++|++|+++++....|+|+ .+...|+.+|+.
T Consensus 103 ~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~ 182 (252)
T PLN00027 103 GILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFI 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHHHHHHHH
Confidence 999999999999999999888765443344456677788999999999999999999987555443 234789999999
Q ss_pred HHHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 153 IMLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 153 v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+...++..+++||+++||||+|||+++..+|+++|+||++|++|+++++++|++++.
T Consensus 183 v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~ 239 (252)
T PLN00027 183 VGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFI 239 (252)
T ss_pred HHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999874
No 11
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=1.8e-45 Score=303.52 Aligned_cols=210 Identities=27% Similarity=0.455 Sum_probs=178.3
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccc--c----CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccc
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKI--Y----GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQ 74 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~--~----~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~ 74 (211)
+++||+||++++++++++...+.. + ...++..+++.+|+.+.+.+++++++||+|+|||+|++.++.|++++++
T Consensus 25 ~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~ 104 (256)
T PLN00167 25 YLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGGHISVPT 104 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhCCCcHhh
Confidence 478999999999999988663321 1 1235677899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCc-CCCchhHHHHHHH
Q 040981 75 VPLYIVAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRA-IGQFGGVAVGMTI 153 (211)
Q Consensus 75 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~-~~~~~~~~ig~~v 153 (211)
.+.|+++|++|+++|+.+.+.++++.........++.+.+++++.|+++|++|++.++...+++++ .+...|+.+|+.+
T Consensus 105 ~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~~~~~~pl~iGl~v 184 (256)
T PLN00167 105 AMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVA 184 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHH
Confidence 999999999999999999888765422111112233467889999999999999999987544332 2346899999999
Q ss_pred HHHHHHhcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 154 MLNVFVAGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 154 ~~~~~~~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
....+..+++||+++||||+|||+++..+|+++|+||++|++|+++++++|++++.+
T Consensus 185 ~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~ 241 (256)
T PLN00167 185 GANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFP 241 (256)
T ss_pred HHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999899999999999999999999999998854
No 12
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-47 Score=308.48 Aligned_cols=211 Identities=27% Similarity=0.562 Sum_probs=181.5
Q ss_pred ChhHHHHHHHHHHHHhhhhhhcccc--CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIY--GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLY 78 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~y 78 (211)
++|||+||++|+++|++++.+...+ ....+..+.++||+++++.+++.+++||||+|||||+++++.||++|+|.+.|
T Consensus 35 ~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y 114 (316)
T KOG0224|consen 35 FLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVY 114 (316)
T ss_pred HHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHH
Confidence 4799999999999999887654433 25667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcc----------------ccccccccC--CchhHHHHHHHHHHHHHHHHhhheecCCc
Q 040981 79 IVAQVVGSLLASGTLSLMLDVTPQ----------------AYFGTVPVG--SNAQSFVAEIIISFLLMFVISGAVTDDRA 140 (211)
Q Consensus 79 i~aQ~~Ga~~g~~~~~~~~~~~~~----------------~~~~~~p~~--s~~~~~~~E~~~t~~l~~~~~~~~~~~~~ 140 (211)
+++|++||++|++.+|..+++... ..+.++|.. +.+++|+.|+++|.+|+.+++.+.+++++
T Consensus 115 ~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~D~rN~ 194 (316)
T KOG0224|consen 115 VLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFAITDKRNP 194 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeEEecCCCC
Confidence 999999999999999998864321 123355543 89999999999999999999998544442
Q ss_pred -CCCchhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-----------cCCceeeeeechhHHHHHHHHHHHhhh
Q 040981 141 -IGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-----------KFRGIWLYIIGPVIGTVTGGFAYNLIK 208 (211)
Q Consensus 141 -~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-----------~~~~~~vy~v~p~~Ga~la~~~~~~~~ 208 (211)
++.+.|+.+|+.+.++....+.++|..+|||||||||++.. ..++.|++|++|++|+++++++|++++
T Consensus 195 ~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~I 274 (316)
T KOG0224|consen 195 IPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFI 274 (316)
T ss_pred CCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeee
Confidence 34578999999999999999999999999999999999952 125689999999999999999999987
Q ss_pred cCC
Q 040981 209 IHG 211 (211)
Q Consensus 209 ~~~ 211 (211)
..|
T Consensus 275 g~h 277 (316)
T KOG0224|consen 275 GFH 277 (316)
T ss_pred ecc
Confidence 543
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=4.4e-45 Score=303.22 Aligned_cols=209 Identities=41% Similarity=0.801 Sum_probs=182.3
Q ss_pred ChhHHHHHHHHHHHHhhhhhhcccc-CCccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIY-GKVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLYI 79 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~yi 79 (211)
+++||+||++++|++++....+... +..++..+++.+|+.+.+.+++++++||+|+|||+|++.++.|++++.+.+.|+
T Consensus 48 ~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi 127 (274)
T PLN00183 48 VLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYI 127 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHH
Confidence 3689999999999999876543322 233556678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHH
Q 040981 80 VAQVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFV 159 (211)
Q Consensus 80 ~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~ 159 (211)
++|++|+++|+.+.+.+++... ....+.|..+.+++++.|+++|+++++.++....+++..+...++.+|+.+.+.++.
T Consensus 128 ~aQ~lGa~~ga~l~~~~~~~~~-~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~~~~~l~iGl~v~~~v~~ 206 (274)
T PLN00183 128 TAQTVGSVLATYVGVSVYGVKA-DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAIGLAVLI 206 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccCCCCceehHHHHHHHHHHHh
Confidence 9999999999999888876432 334456666778999999999999999999875555444556789999999999999
Q ss_pred hcCCcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 160 AGPISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 160 ~~~~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
.+++||+++||||+|+++++..+|+++|+||++|++|+++++++||+++.+
T Consensus 207 ~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~ 257 (274)
T PLN00183 207 TGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLR 257 (274)
T ss_pred ccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998754
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=5.7e-44 Score=291.56 Aligned_cols=207 Identities=37% Similarity=0.735 Sum_probs=177.6
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccC--CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchhHH
Q 040981 1 MIAELIGTYFIIFAGCGAVAVDKIYG--KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVPLY 78 (211)
Q Consensus 1 ~~aEf~GT~~lv~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~~y 78 (211)
+++||+||+++++.++++...++..+ ..++..+++.+|+.+...+++++++||+|+|||+|++.++.|++++++.+.|
T Consensus 3 ~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y 82 (228)
T cd00333 3 YLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVIPY 82 (228)
T ss_pred hhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHH
Confidence 47899999999999998876544322 2345677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcccc----------ccccc--cCCchhHHHHHHHHHHHHHHHHhhheecCCc--CCCc
Q 040981 79 IVAQVVGSLLASGTLSLMLDVTPQAY----------FGTVP--VGSNAQSFVAEIIISFLLMFVISGAVTDDRA--IGQF 144 (211)
Q Consensus 79 i~aQ~~Ga~~g~~~~~~~~~~~~~~~----------~~~~p--~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~--~~~~ 144 (211)
+++|++|+++|+.+.+.+++++.++. +++.| +.+..++++.|+++|+++++.++...++++. ....
T Consensus 83 ~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~~~ 162 (228)
T cd00333 83 IIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGL 162 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCc
Confidence 99999999999999999876532211 11333 3378899999999999999999998655443 3446
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhcc---CCceeeeeechhHHHHHHHHHHHhh
Q 040981 145 GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHK---FRGIWLYIIGPVIGTVTGGFAYNLI 207 (211)
Q Consensus 145 ~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~~---~~~~~vy~v~p~~Ga~la~~~~~~~ 207 (211)
.++.+|+.+....+..+++||+++|||||+++++..+. |+++|+||++|++|+++++++||++
T Consensus 163 ~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 163 APLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999975 9999999999999999999999974
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=5.7e-42 Score=277.64 Aligned_cols=202 Identities=35% Similarity=0.646 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHHhhhhhhcccc----C--CccchhHHHHHHHHHHHHHHHhCCcCcccccHHHHHHHHHhcCccccchh
Q 040981 3 AELIGTYFIIFAGCGAVAVDKIY----G--KVTFPGVCVTWGLIVMVMIYSLAHISGAHFNPGVTIALAIFRQFKWRQVP 76 (211)
Q Consensus 3 aEf~GT~~lv~~~~~~~~~~~~~----~--~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~~~~~~~~~~ 76 (211)
+||+||+++++.++++....... + ..+...+++.+|+.+...+++++++||+|+|||+|++.++.|++++++.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 69999999999999886642211 1 11456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc-ccc-cc--cccCCchhHHHHHHHHHHHHHHHHhhheecCCc--CCCchhHHHH
Q 040981 77 LYIVAQVVGSLLASGTLSLMLDVTPQ-AYF-GT--VPVGSNAQSFVAEIIISFLLMFVISGAVTDDRA--IGQFGGVAVG 150 (211)
Q Consensus 77 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~-~~~-~~--~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~--~~~~~~~~ig 150 (211)
.|+++|++|+++|+.+.+.++++... +.. .. .++.+.+++++.|+++|++++++++...++++. .+...++.+|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG 160 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIG 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHH
Confidence 99999999999999999988875421 111 11 233478899999999999999999987544322 2236899999
Q ss_pred HHHHHHHHHhcCCcccccchHhhHHHHHhhc--cCCceeeeeechhHHHHHHHHHH
Q 040981 151 MTIMLNVFVAGPISGASMNPARSIGPAIVKH--KFRGIWLYIIGPVIGTVTGGFAY 204 (211)
Q Consensus 151 ~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~--~~~~~~vy~v~p~~Ga~la~~~~ 204 (211)
+.+....+..+++||+++||||+++++++.+ +|+++|+||++|++|+++++.+|
T Consensus 161 ~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 161 LLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987 89999999999999999999875
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.68 E-value=5.4e-17 Score=136.33 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=84.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheecC-CcC--CCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCC
Q 040981 111 GSNAQSFVAEIIISFLLMFVISGAVTDD-RAI--GQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFR 184 (211)
Q Consensus 111 ~s~~~~~~~E~~~t~~l~~~~~~~~~~~-~~~--~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~ 184 (211)
.+.+|.++.|+++|++|+++.+.....+ +.. ... .++.+|+++.+.+++.+++||+|+||||++++++.++ +|+
T Consensus 68 ~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~ 147 (298)
T PLN00026 68 VSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWK 147 (298)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHH
Confidence 3677999999999999999998643222 111 122 3578999999999999999999999999999999876 899
Q ss_pred ceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 185 GIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 185 ~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+.|+||++|++|+++|+++++.++++
T Consensus 148 ~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 148 HVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988754
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.67 E-value=8.9e-17 Score=135.21 Aligned_cols=98 Identities=27% Similarity=0.412 Sum_probs=83.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheecC--Cc-CCCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCc
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVTDD--RA-IGQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRG 185 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~~~--~~-~~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~ 185 (211)
+..|.++.|+++|++|+++.++....+ +. .... .++.+|+.+.+.+++.+++||+|+||||++++++.++ +|++
T Consensus 52 ~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~ 131 (296)
T PLN00184 52 PFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQ 131 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHH
Confidence 467899999999999999998864221 11 1123 3466799999999999999999999999999999887 8999
Q ss_pred eeeeeechhHHHHHHHHHHHhhhc
Q 040981 186 IWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 186 ~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
.|+||++|++|+++|+++++.++.
T Consensus 132 ~~~YiiaQllGA~lga~~~~~l~~ 155 (296)
T PLN00184 132 VPAYVISQVIGSTLAAATLRLLFG 155 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988874
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.65 E-value=1.6e-16 Score=132.37 Aligned_cols=106 Identities=29% Similarity=0.521 Sum_probs=88.4
Q ss_pred cccccccC---CchhHHHHHHHHHHHHHHHHhhheecCCcCC---Cc--hhHHHHHHHHHHHHHhcCCcccccchHhhHH
Q 040981 104 YFGTVPVG---SNAQSFVAEIIISFLLMFVISGAVTDDRAIG---QF--GGVAVGMTIMLNVFVAGPISGASMNPARSIG 175 (211)
Q Consensus 104 ~~~~~p~~---s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~---~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g 175 (211)
.++..|.. +.+|.++.|+++|++++++.+....+++..+ .. .++.+|+.+.+.+++.+++||+++||||+++
T Consensus 32 ~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla 111 (274)
T PLN00183 32 LFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIA 111 (274)
T ss_pred hccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 34455643 6779999999999999999988754433211 22 4568999999999999999999999999999
Q ss_pred HHHhhc-cCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 176 PAIVKH-KFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 176 ~~i~~~-~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+++.++ +|++.|+||++|++|+++|+.+++.++.
T Consensus 112 ~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 146 (274)
T PLN00183 112 FATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYG 146 (274)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999987 8999999999999999999999888764
No 19
>PLN00167 aquaporin TIP5; Provisional
Probab=99.60 E-value=1.7e-15 Score=125.36 Aligned_cols=98 Identities=23% Similarity=0.430 Sum_probs=84.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheecCC---c-C---C---CchhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVTDDR---A-I---G---QFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH 181 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~~~~---~-~---~---~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~ 181 (211)
+.+|.++.|+++|+++++..++...+++ . . + ...++.+|+.+.+.+++.+++||+|+||||++++.+.++
T Consensus 20 ~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g~ 99 (256)
T PLN00167 20 NALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGGH 99 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhCC
Confidence 5678999999999999999988754321 1 0 0 136799999999999999999999999999999999876
Q ss_pred -cCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 182 -KFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 182 -~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+|++.|+||++|++|+++++.+++.+++
T Consensus 100 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 128 (256)
T PLN00167 100 ISVPTAMFYWISQMLASVMACLFLKVTTV 128 (256)
T ss_pred CcHhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999988754
No 20
>PLN00166 aquaporin TIP2; Provisional
Probab=99.59 E-value=1.3e-15 Score=125.70 Aligned_cols=99 Identities=21% Similarity=0.373 Sum_probs=83.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheec--CC--c----CCCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhh
Q 040981 111 GSNAQSFVAEIIISFLLMFVISGAVTD--DR--A----IGQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVK 180 (211)
Q Consensus 111 ~s~~~~~~~E~~~t~~l~~~~~~~~~~--~~--~----~~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~ 180 (211)
.+..|+++.|+++|++++++.++...+ ++ . .... .++.+|+.+.+.+++.+++||+|+||||++++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 356789999999999999999887433 11 1 1112 467799999999999999999999999999999986
Q ss_pred c-cCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 181 H-KFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 181 ~-~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+ +|.+.|+||++|++|+++++.+++.++.
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~ 124 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTN 124 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 7889999999999999999999998764
No 21
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.57 E-value=2.5e-15 Score=125.77 Aligned_cols=98 Identities=27% Similarity=0.419 Sum_probs=82.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheecCCcC---CCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCc
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVTDDRAI---GQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRG 185 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~---~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~ 185 (211)
+.+|.++.|+++|++|++..++...+++.. ... .++.+|+.+.+.++..+++||+|+|||++++.++.++ +|.+
T Consensus 40 ~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~ 119 (283)
T PLN00182 40 CLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQ 119 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHHH
Confidence 456899999999999999998864432211 122 3458899999999999999999999999999999988 8999
Q ss_pred eeeeeechhHHHHHHHHHHHhhhc
Q 040981 186 IWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 186 ~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
.|+||++|++|+++|+++.+.++.
T Consensus 120 ~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 120 VPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888763
No 22
>PRK05420 aquaporin Z; Provisional
Probab=99.56 E-value=7.2e-15 Score=120.08 Aligned_cols=96 Identities=27% Similarity=0.360 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhheec----CCcCCCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCce
Q 040981 114 AQSFVAEIIISFLLMFVISGAVTD----DRAIGQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRGI 186 (211)
Q Consensus 114 ~~~~~~E~~~t~~l~~~~~~~~~~----~~~~~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~~ 186 (211)
.|.++.|+++|+++++..+..... ++..... .++.+|+.+.+.+++.++.||+|+||||++++.+.++ +|++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 578999999999999988775321 1111122 3689999999999999999999999999999999976 89999
Q ss_pred eeeeechhHHHHHHHHHHHhhhc
Q 040981 187 WLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 187 ~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
|+||++|++|+++|+.+.+.+++
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~ 104 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIAS 104 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999977776653
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.55 E-value=5.8e-15 Score=124.44 Aligned_cols=99 Identities=23% Similarity=0.444 Sum_probs=83.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheecCCc---CCC--chhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCc
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVTDDRA---IGQ--FGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRG 185 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~~~~~---~~~--~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~ 185 (211)
+..|.++.|+++|++++++.++...+.+. ... ..++.+|+.+.+.+++.+++||+|+|||+++++++.++ +|++
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 34689999999999999998886433211 112 24578999999999999999999999999999999988 8999
Q ss_pred eeeeeechhHHHHHHHHHHHhhhcC
Q 040981 186 IWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 186 ~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
.|.||++|++|+++|+.+.+.++++
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999998887654
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.55 E-value=9.7e-15 Score=120.77 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=82.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhee------cCCc--CCC--chhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVT------DDRA--IGQ--FGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH 181 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~------~~~~--~~~--~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~ 181 (211)
+.+|.++.|+++|++++++.++... ++++ ... ..++.+|+.+.+.++..++.||+|+||||++++.+.++
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 4578999999999999999887631 1111 111 35799999999999999999999999999999998776
Q ss_pred -cCCceeeeeechhHHHHHHHHHHHhhhc
Q 040981 182 -KFRGIWLYIIGPVIGTVTGGFAYNLIKI 209 (211)
Q Consensus 182 -~~~~~~vy~v~p~~Ga~la~~~~~~~~~ 209 (211)
+|.+.|+||++|++|+++++.+++.+..
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999987653
No 25
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.55 E-value=4.5e-15 Score=121.25 Aligned_cols=96 Identities=27% Similarity=0.423 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHhhheecCCcC----C--CchhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCcee
Q 040981 115 QSFVAEIIISFLLMFVISGAVTDDRAI----G--QFGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRGIW 187 (211)
Q Consensus 115 ~~~~~E~~~t~~l~~~~~~~~~~~~~~----~--~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~~~ 187 (211)
|.++.|+++|+++++..++...+++.. . ...++.+|+.+.+.++..++.||+++|||+++++.+.++ +|++.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 568899999999999999875443321 1 135789999999999999999999999999999999987 799999
Q ss_pred eeeechhHHHHHHHHHHHhhhcC
Q 040981 188 LYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 188 vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+||++|++|+++++.+++.++++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~ 103 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYG 103 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999998887654
No 26
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.4e-14 Score=119.42 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=84.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheecCC----cCCCc--hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCC
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVTDDR----AIGQF--GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFR 184 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~~~~----~~~~~--~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~ 184 (211)
...|.+++||++|++|++..++...+.. ..+.. ..+.+|+++.+.++.++.+||+|+|||++++..++++ +|+
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 4678999999999999998888754321 12222 4589999999999999999999999999999999997 899
Q ss_pred ceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 185 GIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 185 ~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
++.+|.++|++||++++.....+++|
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d 135 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYD 135 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888777765
No 27
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.44 E-value=9.3e-14 Score=112.59 Aligned_cols=92 Identities=28% Similarity=0.452 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhheecC--Cc----CC--C--chhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCCcee
Q 040981 119 AEIIISFLLMFVISGAVTDD--RA----IG--Q--FGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFRGIW 187 (211)
Q Consensus 119 ~E~~~t~~l~~~~~~~~~~~--~~----~~--~--~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~~~~ 187 (211)
.|+++|++++++.+....+. ++ .+ . ..++.+|+.+...++..++.||+|+||||++++.+.++ +|++.|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 49999999999999875431 11 11 1 25789999999999999999999999999999999987 899999
Q ss_pred eeeechhHHHHHHHHHHHhhhcC
Q 040981 188 LYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 188 vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+||++|++|+++++.+++.++++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~ 103 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSG 103 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999998887764
No 28
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.5e-13 Score=111.84 Aligned_cols=98 Identities=29% Similarity=0.494 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhheec----C--C-cCCCc-hhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cC
Q 040981 113 NAQSFVAEIIISFLLMFVISGAVTD----D--R-AIGQF-GGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KF 183 (211)
Q Consensus 113 ~~~~~~~E~~~t~~l~~~~~~~~~~----~--~-~~~~~-~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~ 183 (211)
..+.++.|+++|++|++...+.... + . ..+.. ..+.+|+.|.+.++..+++||+|+|||++++.++.++ +|
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~ 83 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPW 83 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCH
Confidence 3467899999999999988775421 1 1 11222 5689999999999999999999999999999999997 89
Q ss_pred CceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 184 RGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 184 ~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
++...||++|++|+++++.+...++++
T Consensus 84 ~~v~~YivAQ~lGA~~ga~l~~~~~~~ 110 (241)
T COG0580 84 RKVLPYIVAQVLGAFAGAALLYLLYYG 110 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999888777764
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1e-12 Score=107.15 Aligned_cols=100 Identities=25% Similarity=0.408 Sum_probs=85.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheecCC-cCCC----chhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhhc-cCC
Q 040981 111 GSNAQSFVAEIIISFLLMFVISGAVTDDR-AIGQ----FGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVKH-KFR 184 (211)
Q Consensus 111 ~s~~~~~~~E~~~t~~l~~~~~~~~~~~~-~~~~----~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~~-~~~ 184 (211)
.+.+|+++.||++|++++++.+......+ ..+. ...+..|+.+.+.++..+++||+|+|||++++..+.++ ++.
T Consensus 8 ~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~ 87 (238)
T KOG0223|consen 8 VSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLF 87 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHH
Confidence 36789999999999999999988753332 1111 24688999999999999999999999999999999987 788
Q ss_pred ceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 185 GIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 185 ~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+...||++|++|+++++.+.+.+.++
T Consensus 88 ~~~~Y~vaQ~lGa~~g~~~l~~~~~~ 113 (238)
T KOG0223|consen 88 RAVAYIVAQLLGAIAGAALLKVVTPG 113 (238)
T ss_pred HhHHHHHHHHHHHHHHHHHHheecCc
Confidence 89999999999999999999988775
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.32 E-value=9e-13 Score=107.49 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhee--cCC-cC---C---C--chhHHHHHHHHHHHHHhcCCcccccchHhhHHHHHhh
Q 040981 112 SNAQSFVAEIIISFLLMFVISGAVT--DDR-AI---G---Q--FGGVAVGMTIMLNVFVAGPISGASMNPARSIGPAIVK 180 (211)
Q Consensus 112 s~~~~~~~E~~~t~~l~~~~~~~~~--~~~-~~---~---~--~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g~~i~~ 180 (211)
+.+|.++.|+++|+++++....... +++ .+ + . ...+.+|+.+.+.++..++.||+|+|||++++..+.+
T Consensus 6 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~g 85 (227)
T PF00230_consen 6 SLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALTG 85 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeeee
Confidence 5689999999999999988876422 111 11 0 1 2345678889899999999999999999999999998
Q ss_pred c-cCCceeeeeechhHHHHHHHHHHHhhhcC
Q 040981 181 H-KFRGIWLYIIGPVIGTVTGGFAYNLIKIH 210 (211)
Q Consensus 181 ~-~~~~~~vy~v~p~~Ga~la~~~~~~~~~~ 210 (211)
+ +|++...|+++|++|+++|+.+.+.++++
T Consensus 86 ~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 86 RISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eecccceeeEEeeccccccccccchhhcccC
Confidence 7 88999999999999999999998887764
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=89.83 E-value=4.2 Score=34.00 Aligned_cols=175 Identities=14% Similarity=0.223 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCc-CcccccHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhcc-----Cccc
Q 040981 30 FPGVCVTWGLIVMVMIYSLAHI-SGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDV-----TPQA 103 (211)
Q Consensus 30 ~~~~~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~-----~~~~ 103 (211)
.+.-++.+++++.+.+.+-+.. +| |--..-.-..+|++++++.+--+.-=.+|=++|+.++..++.- ..+.
T Consensus 64 ~lvg~~~F~~GLilVv~~g~ELfT~---n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 64 KLVGGLVFSLGLILVVIAGSELFTS---NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHhhhhCcccccc---chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3344566666666666664443 22 3333334456789999888877777777777777765554421 1111
Q ss_pred ccc-----c---cccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHHhcCCcccccchHhhHH
Q 040981 104 YFG-----T---VPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGPISGASMNPARSIG 175 (211)
Q Consensus 104 ~~~-----~---~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPA~~~g 175 (211)
..+ . --+.+..+.|..-.++-++.++.+...-.-|...+.. +.+-+.+. .++..++.=...|-..--.
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~~~~K~--~~m~~pv~--~Fv~~GfeH~VANm~~i~~ 216 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKDGAAKI--FAIILPVM--LFVASGFEHSVANMFMIPW 216 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHH--HHHHcCCceeeehHHHHHH
Confidence 111 0 0112446666666677777777776642211111111 22222222 2333333323344222211
Q ss_pred HHHhhc--cCCc-----eeeeeechhH-HHHHHHHHHHhhhcCC
Q 040981 176 PAIVKH--KFRG-----IWLYIIGPVI-GTVTGGFAYNLIKIHG 211 (211)
Q Consensus 176 ~~i~~~--~~~~-----~~vy~v~p~~-Ga~la~~~~~~~~~~~ 211 (211)
.+...+ +|.+ .-.=.+|.++ |+++-++.|.++++++
T Consensus 217 ~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~ 260 (265)
T COG2116 217 AAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQ 260 (265)
T ss_pred HHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhcccc
Confidence 222221 3333 2233567777 5577788888887653
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=75.88 E-value=46 Score=27.90 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhCCc-CcccccHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhccC---cc----ccc
Q 040981 34 CVTWGLIVMVMIYSLAHI-SGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVT---PQ----AYF 105 (211)
Q Consensus 34 ~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~----~~~ 105 (211)
+..+++++.+.+..-+.. +| |=.......+.||.++++.+--+.-=.+|=++|+.+.-.+.... .. ...
T Consensus 62 g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~ 138 (268)
T PRK11562 62 GATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIV 138 (268)
T ss_pred HHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 445566555555553333 44 43333345677888888888766666666666666544432111 11 110
Q ss_pred c----ccccCCchhHHHHHHHHHHHHHHHHhhh
Q 040981 106 G----TVPVGSNAQSFVAEIIISFLLMFVISGA 134 (211)
Q Consensus 106 ~----~~p~~s~~~~~~~E~~~t~~l~~~~~~~ 134 (211)
. ..-+.+..+.|+--.++-++.++.+...
T Consensus 139 ~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~ 171 (268)
T PRK11562 139 HSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA 171 (268)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0012345566666667777777766654
No 33
>PRK10805 formate transporter; Provisional
Probab=73.28 E-value=53 Score=27.79 Aligned_cols=97 Identities=9% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhCCc-CcccccHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhccC------cccccc
Q 040981 34 CVTWGLIVMVMIYSLAHI-SGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVT------PQAYFG 106 (211)
Q Consensus 34 ~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~------~~~~~~ 106 (211)
++.+.+++...+..-+.. +| |-..+++ .+.||.++++.+-.+.-=.+|=++|+.+.-.+.... +.....
T Consensus 72 ~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~ 147 (285)
T PRK10805 72 GICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGL 147 (285)
T ss_pred HHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHH
Confidence 445555555555554444 55 6555544 678888988887544444455555544432222110 011100
Q ss_pred -------ccccCCchhHHHHHHHHHHHHHHHHhhh
Q 040981 107 -------TVPVGSNAQSFVAEIIISFLLMFVISGA 134 (211)
Q Consensus 107 -------~~p~~s~~~~~~~E~~~t~~l~~~~~~~ 134 (211)
..-+.+.++.|+--.++-++.++.+...
T Consensus 148 ~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 148 NVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012355666777677777777776643
No 34
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=66.86 E-value=36 Score=28.12 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhCCc-CcccccHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhccCc-----ccccc
Q 040981 33 VCVTWGLIVMVMIYSLAHI-SGAHFNPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDVTP-----QAYFG 106 (211)
Q Consensus 33 ~~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-----~~~~~ 106 (211)
.++.+.+++...+..-+.. +| |-.......+.||.++++.+--+.-=.+|=++|+.+.-.+..... .....
T Consensus 60 ~g~~F~~Gl~lIv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~~ 136 (250)
T PF01226_consen 60 GGLVFPIGLVLIVFLGGELFTG---NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMGE 136 (250)
T ss_dssp HHHHHTHHHHHHHHHT---TTT---TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcchhccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 3555666666555554444 44 666555567888999988877666666666666665544432111 01111
Q ss_pred -------ccccCCchhHHHHHHHHHHHHHHHHhhh
Q 040981 107 -------TVPVGSNAQSFVAEIIISFLLMFVISGA 134 (211)
Q Consensus 107 -------~~p~~s~~~~~~~E~~~t~~l~~~~~~~ 134 (211)
..-+.+.++.|+.-.++.++.++.+...
T Consensus 137 ~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 137 YLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112356677777777788877777765
No 35
>PRK09713 focB putative formate transporter; Provisional
Probab=60.11 E-value=96 Score=26.21 Aligned_cols=97 Identities=7% Similarity=0.006 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCc-CcccccHHHHHHHHHhcCccccchhHHH----HHHHHHHHHHHHHHHHHhc-c-Ccccccc
Q 040981 34 CVTWGLIVMVMIYSLAHI-SGAHFNPGVTIALAIFRQFKWRQVPLYI----VAQVVGSLLASGTLSLMLD-V-TPQAYFG 106 (211)
Q Consensus 34 ~~~~g~~~~~~i~~~~~i-SGah~NPavTla~~l~~~~~~~~~~~yi----~aQ~~Ga~~g~~~~~~~~~-~-~~~~~~~ 106 (211)
++.+.+++.+.+..-+.. +| |=...+ ...+||.++++.+-.+ ++-++|++.-+.+.+.... . +......
T Consensus 71 g~~F~vGLilIv~~g~ELfTg---N~~~~~-~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~~ 146 (282)
T PRK09713 71 GLCFTLGFILLAVCGTSLFTS---SVMTVM-AKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGV 146 (282)
T ss_pred HHHHHHHHHHHHHhCccccHH---HHHHHH-HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHHH
Confidence 455555565555554433 33 322222 3568888888887444 4455555554444332111 0 0110000
Q ss_pred -------ccccCCchhHHHHHHHHHHHHHHHHhhh
Q 040981 107 -------TVPVGSNAQSFVAEIIISFLLMFVISGA 134 (211)
Q Consensus 107 -------~~p~~s~~~~~~~E~~~t~~l~~~~~~~ 134 (211)
..-+.+.++.|+--.++-++.++.+...
T Consensus 147 ~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~ 181 (282)
T PRK09713 147 AVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMS 181 (282)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112356777777778888888777654
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=57.71 E-value=3.9 Score=29.77 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.3
Q ss_pred cCcccccHHHHHHHHHhcCc
Q 040981 51 ISGAHFNPGVTIALAIFRQF 70 (211)
Q Consensus 51 iSGah~NPavTla~~l~~~~ 70 (211)
=|+||+||.+.++..+.++-
T Consensus 7 Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHhccC
Confidence 37899999999999998753
No 37
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=50.33 E-value=1.4e+02 Score=24.41 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhcc-----Ccc-cccc-------ccccCCchhHHHHHHHH
Q 040981 57 NPGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDV-----TPQ-AYFG-------TVPVGSNAQSFVAEIII 123 (211)
Q Consensus 57 NPavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~-----~~~-~~~~-------~~p~~s~~~~~~~E~~~ 123 (211)
|-.......+.||.++++.+-.+.-=.+|=++|+.+.-.+... ++. +... ..-+.+..+.++.-.++
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 4444434467888888888876666666666666554333210 111 1111 01123556666666677
Q ss_pred HHHHHHHHhh
Q 040981 124 SFLLMFVISG 133 (211)
Q Consensus 124 t~~l~~~~~~ 133 (211)
.++..+.+..
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=45.24 E-value=9.9 Score=32.93 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.8
Q ss_pred hCCcCcccccHHHHHHHHHhc
Q 040981 48 LAHISGAHFNPGVTIALAIFR 68 (211)
Q Consensus 48 ~~~iSGah~NPavTla~~l~~ 68 (211)
.+.-+|||+.||+.++..+.+
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 445689999999999998875
No 39
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=37.89 E-value=1.5e+02 Score=21.07 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHHhcC
Q 040981 83 VVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGP 162 (211)
Q Consensus 83 ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~ 162 (211)
.+|+.+|+.+-+.+....+ ..+....+..+..-.++++++-+..-....+. ..........++.+.. .+.
T Consensus 5 ~lgg~~Ga~~R~~l~~~~~-----~~~~~~p~gt~~vN~~g~fllG~~~~~~~~~~-~~~~~~~~~~~l~~Gf----~G~ 74 (117)
T PF02537_consen 5 ALGGALGALLRYGLSKLLN-----RRWGWFPWGTLLVNVLGCFLLGLLAGLLAKKL-ASKWSPSLRLFLGTGF----CGG 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHhc-----cccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHHH----cch
Confidence 5788888877666543211 11112256678899999999887655432111 1112233333333322 222
Q ss_pred CcccccchHhhHHHHHhhccCCceeeeeechhHHHHHHHHH
Q 040981 163 ISGASMNPARSIGPAIVKHKFRGIWLYIIGPVIGTVTGGFA 203 (211)
Q Consensus 163 ~tG~~~NPA~~~g~~i~~~~~~~~~vy~v~p~~Ga~la~~~ 203 (211)
.|-- =-.+.+.....-.+++.....|.+..+.++++++.+
T Consensus 75 lTTf-St~~~e~~~l~~~~~~~~~~~y~~~s~~~g~~~~~~ 114 (117)
T PF02537_consen 75 LTTF-STFILETFQLFESGRWFRALLYVLVSVILGLLAAWL 114 (117)
T ss_pred HHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2200 000111111111225666778888888888877654
No 40
>PRK14195 camphor resistance protein CrcB; Provisional
Probab=33.03 E-value=1.8e+02 Score=21.18 Aligned_cols=107 Identities=15% Similarity=0.024 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHHhc
Q 040981 82 QVVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAG 161 (211)
Q Consensus 82 Q~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~ 161 (211)
=.+|+.+|+.+-|.+-. ..++ ..++.-.+..+..-.++++++-+..-.. .++.. ...++...+ ..-..+
T Consensus 7 V~~Gg~~Ga~~Ry~l~~-~~~~---~~~~~fP~gTl~vNi~GsfllG~~~~~~-~~~~~--~~~~~~~~l----~tGf~G 75 (125)
T PRK14195 7 VAAGGALGSVARYLVGV-GALR---LMGPAFPWGTLAVNVTGSFLIGVLAGLL-AHRWN--ASQEWRLFL----IVGVLG 75 (125)
T ss_pred HHHHHHHHHHHHHHHHH-HHHh---ccCCCCchHHHHHHHHHHHHHHHHHHHH-HhccC--CCHHHHHHH----HhHhcc
Confidence 34888999876555432 1111 1111123456888889999887655332 11111 111122121 122234
Q ss_pred CCcccccchHhhHHHHHhh----ccCCceeeeeechhHHHHHHHHHH
Q 040981 162 PISGASMNPARSIGPAIVK----HKFRGIWLYIIGPVIGTVTGGFAY 204 (211)
Q Consensus 162 ~~tG~~~NPA~~~g~~i~~----~~~~~~~vy~v~p~~Ga~la~~~~ 204 (211)
..|-- -++...... ++|.....|.+..+.++++++.+=
T Consensus 76 gfTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG 117 (125)
T PRK14195 76 GFTTF-----SAFSLDAALLIERGAYGAAAAYIAASVVLSVAALFAG 117 (125)
T ss_pred CcccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44411 122222222 345556789999999988887653
No 41
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=28.21 E-value=2.4e+02 Score=20.61 Aligned_cols=107 Identities=12% Similarity=-0.006 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHHhcC
Q 040981 83 VVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGP 162 (211)
Q Consensus 83 ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~ 162 (211)
.+|+.+|+.+-|.+-. ..++ ..++...+..+..-.+++|++-+..-....+++. ....++...+.+ -..+.
T Consensus 7 ~~Gg~lGa~~Ry~l~~-~~~~---~~~~~fp~gTl~vNi~GsfllG~~~~~~~~~~~~-~~~~~~~~~l~t----Gf~Gg 77 (127)
T PRK14206 7 ALGSALGGTLRFWLSG-LVAE---ATGGTFPWGTLVINVSGSFLIGFFATLTGPEGRV-FVGESWRLFVMV----GVCGG 77 (127)
T ss_pred HHhHHHHHHHHHHHHH-HHhh---cccCCCchHHHHHHHHHHHHHHHHHHHHhhcccc-cCCHHHHHHHHH----HHccc
Confidence 4888888876555432 1111 1111223457888999999988765432111111 111122222222 22344
Q ss_pred CcccccchHhhHHHHHh----hccCCceeeeeechhHHHHHHHHH
Q 040981 163 ISGASMNPARSIGPAIV----KHKFRGIWLYIIGPVIGTVTGGFA 203 (211)
Q Consensus 163 ~tG~~~NPA~~~g~~i~----~~~~~~~~vy~v~p~~Ga~la~~~ 203 (211)
.|-- -++....+ .++|.....|++..++++++++++
T Consensus 78 fTTF-----STf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~~ 117 (127)
T PRK14206 78 FTTF-----SSFSLQTLNLARDGDWLRAGGNVVLSVVFCLLAVWL 117 (127)
T ss_pred cccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4411 12222222 235555668999999999888765
No 42
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=27.72 E-value=2.6e+02 Score=20.75 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhccCccccccccccCCchhHHHHHHHHHHHHHHHHhhheecCCcCCCchhHHHHHHHHHHHHHhcC
Q 040981 83 VVGSLLASGTLSLMLDVTPQAYFGTVPVGSNAQSFVAEIIISFLLMFVISGAVTDDRAIGQFGGVAVGMTIMLNVFVAGP 162 (211)
Q Consensus 83 ~~Ga~~g~~~~~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~t~~l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~ 162 (211)
.+|+.+|+.+-|.+-. ..++ ..+..-.+..+..-.+++|++-+..-.. .++.. ...+....+.+. ..+.
T Consensus 14 ~~GG~~Ga~lRy~l~~-~~~~---~~~~~fP~gTl~VNv~GsfllG~l~~~~-~~~~~--~~~~~~~~l~tG----flGg 82 (133)
T PRK14218 14 MLGGAFGSGLRFVIGS-CLLQ---RFGAGFPWGTLAVNLIGSFVAGFLLIWL-DKRGS--AGWPWRMLLIVG----LIGG 82 (133)
T ss_pred HHHHHHHHHHHHHHHH-HHHH---hcCCCCcHHHHHHHHHHHHHHHHHHHHH-HhccC--CCHHHHHHHHHH----Hhch
Confidence 4889999876655432 1111 1111234567889999999987765332 11111 111222222221 2344
Q ss_pred CcccccchHhhHHHHHhh----ccCCceeeeeechhHHHHHHHHHH
Q 040981 163 ISGASMNPARSIGPAIVK----HKFRGIWLYIIGPVIGTVTGGFAY 204 (211)
Q Consensus 163 ~tG~~~NPA~~~g~~i~~----~~~~~~~vy~v~p~~Ga~la~~~~ 204 (211)
+|-- -+|...... +++.....|.+..++++++++.+=
T Consensus 83 fTTF-----STf~~E~~~L~~~~~~~~a~~y~~~s~~~gl~a~~lG 123 (133)
T PRK14218 83 LTTF-----SSLMMECLVFVRSDRSLMVGIYLCITLLFGLLFVFLG 123 (133)
T ss_pred hccH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4410 123322222 245555679999998888887653
No 43
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=26.29 E-value=5.3e+02 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 040981 58 PGVTIALAIFRQFKWRQVPLYIVAQVVGSLLASGTLSLMLDV 99 (211)
Q Consensus 58 PavTla~~l~~~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 99 (211)
.+|+.+++-....|.+....++.+.++|+.+|..+.+.+++.
T Consensus 372 ~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 372 AAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444455677888889999999999999888877763
No 44
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=26.27 E-value=1.5e+02 Score=21.06 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=35.7
Q ss_pred cccccHHHHHHHH-HhcCc-cccchhHHHHHHHHHHHHHHHHHHHHhc
Q 040981 53 GAHFNPGVTIALA-IFRQF-KWRQVPLYIVAQVVGSLLASGTLSLMLD 98 (211)
Q Consensus 53 Gah~NPavTla~~-l~~~~-~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 98 (211)
||.++|--.+=-= +.|+. +..|=++|+.+-++||-.|..+++++-+
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~ 100 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTG 100 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5788887777553 34444 4668889999999999999999988754
No 45
>PRK09979 putative rho operon leader peptide; Provisional
Probab=22.73 E-value=32 Score=18.39 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=11.5
Q ss_pred CCcCcccccHHHHHH
Q 040981 49 AHISGAHFNPGVTIA 63 (211)
Q Consensus 49 ~~iSGah~NPavTla 63 (211)
..+||..+||..-+.
T Consensus 4 eqisgsslnpscrfs 18 (33)
T PRK09979 4 EQISGSSLNPSCRFS 18 (33)
T ss_pred ccccCCcCCcccccc
Confidence 368999999986543
No 46
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=22.46 E-value=2.7e+02 Score=23.42 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=40.6
Q ss_pred HHHHhcCc----cccchhHHHHHHHHHHHHHHHHHHHHhccCcccccc----ccccCCchhHHHHHHHHHHHHHH
Q 040981 63 ALAIFRQF----KWRQVPLYIVAQVVGSLLASGTLSLMLDVTPQAYFG----TVPVGSNAQSFVAEIIISFLLMF 129 (211)
Q Consensus 63 a~~l~~~~----~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~----~~p~~s~~~~~~~E~~~t~~l~~ 129 (211)
-+.+.|++ ++.+.+-.++-|..=+-.|+.+.+...+++.+.-.. +.|....+..+..|.++.+++-+
T Consensus 82 ~L~~l~~l~~~~~~~e~lgkiiv~~vP~siGa~la~~~L~~~~~~~~~~~~~~~~~~~~~~Dl~q~~vGA~~lA~ 156 (267)
T PF09622_consen 82 VLTLLGKLTLDTPPREALGKIIVQSVPASIGAALARSQLGGDSDEEEEEEEEDKPERGYLADLGQMIVGALFLAF 156 (267)
T ss_pred HHHHHhhCCCCCCHHHHhHhheeeEecHHHHHHHHHHHcCCCCCcccccccccccccccHHHHHHHHHHHHHHhc
Confidence 33444544 455666777888888888888888887654332211 23444556666666666665543
Done!