Query 040983
Match_columns 74
No_of_seqs 118 out of 842
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 99.9 1.3E-27 2.8E-32 159.8 5.8 73 1-73 127-201 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 99.8 1.1E-20 2.3E-25 126.9 7.2 70 2-72 127-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 99.8 1.2E-19 2.7E-24 121.5 8.0 71 2-73 128-199 (200)
4 COG0655 WrbA Multimeric flavod 99.0 1.4E-09 2.9E-14 73.3 6.6 71 2-73 135-206 (207)
5 PRK09267 flavodoxin FldA; Vali 95.2 0.099 2.2E-06 33.7 6.1 57 5-72 107-167 (169)
6 PRK06242 flavodoxin; Provision 93.9 0.16 3.4E-06 31.8 4.5 19 48-66 129-147 (150)
7 PRK06756 flavodoxin; Provision 78.5 3 6.4E-05 26.1 3.0 19 49-67 127-145 (148)
8 PF06554 Olfactory_mark: Olfac 76.8 2.9 6.2E-05 27.5 2.6 16 55-70 108-123 (151)
9 PF01590 GAF: GAF domain; Int 75.1 6.4 0.00014 23.4 3.8 36 32-67 116-152 (154)
10 KOG0808 Carbon-nitrogen hydrol 71.7 5.5 0.00012 29.2 3.2 28 34-61 313-352 (387)
11 PRK05569 flavodoxin; Provision 69.8 5.5 0.00012 24.5 2.6 18 49-66 123-140 (141)
12 PRK13558 bacterio-opsin activa 68.1 14 0.0003 28.3 5.0 41 32-72 398-438 (665)
13 PRK05568 flavodoxin; Provision 66.5 7.5 0.00016 23.9 2.7 19 49-67 123-141 (142)
14 PRK07308 flavodoxin; Validated 66.3 8 0.00017 24.1 2.9 19 49-67 126-144 (146)
15 PRK06703 flavodoxin; Provision 64.6 11 0.00024 23.6 3.3 24 49-72 126-150 (151)
16 COG3215 PilZ Tfp pilus assembl 63.1 5.6 0.00012 25.1 1.6 17 2-18 24-40 (117)
17 PF13492 GAF_3: GAF domain; PD 62.1 23 0.0005 20.3 4.2 37 32-68 90-126 (129)
18 smart00065 GAF Domain present 61.9 26 0.00055 19.4 5.1 41 32-72 101-142 (149)
19 PF10642 Tom5: Mitochondrial i 61.5 24 0.00051 19.1 3.8 21 48-68 7-27 (49)
20 PF13185 GAF_2: GAF domain; PD 60.6 27 0.0006 20.5 4.4 37 32-68 110-146 (148)
21 PRK11921 metallo-beta-lactamas 57.9 12 0.00025 27.5 2.8 19 49-67 373-391 (394)
22 PRK05452 anaerobic nitric oxid 54.7 18 0.00039 27.5 3.5 22 49-70 376-397 (479)
23 PF07356 DUF1481: Protein of u 51.7 30 0.00065 23.7 3.9 25 49-73 91-115 (195)
24 TIGR01753 flav_short flavodoxi 46.3 20 0.00043 21.6 2.1 18 49-66 123-140 (140)
25 COG3867 Arabinogalactan endo-1 43.9 28 0.00061 26.1 2.9 45 3-65 68-113 (403)
26 COG2203 FhlA FOG: GAF domain [ 42.1 68 0.0015 18.4 5.1 39 33-71 125-164 (175)
27 PF14419 SPOUT_MTase_2: AF2226 38.5 25 0.00055 23.7 1.8 24 49-72 7-30 (173)
28 PF05596 Taeniidae_ag: Taeniid 38.1 25 0.00053 20.0 1.5 13 61-73 28-40 (64)
29 TIGR00725 conserved hypothetic 36.0 55 0.0012 21.2 3.1 18 50-67 12-29 (159)
30 PLN00174 predicted protein; Pr 35.2 16 0.00035 24.5 0.5 17 6-22 129-146 (160)
31 COG0426 FpaA Uncharacterized f 34.4 32 0.00069 26.0 2.0 19 49-67 370-388 (388)
32 PF10759 DUF2587: Protein of u 32.8 48 0.001 22.2 2.4 13 49-61 94-106 (169)
33 PF03358 FMN_red: NADPH-depend 31.0 40 0.00087 20.7 1.8 17 3-19 128-144 (152)
34 TIGR01817 nifA Nif-specific re 29.6 1.7E+02 0.0037 22.2 5.3 38 32-69 118-156 (534)
35 TIGR00732 dprA DNA protecting 27.4 94 0.002 21.2 3.3 22 46-67 51-72 (220)
36 PF02327 BChl_A: Bacteriochlor 26.2 19 0.00041 26.4 -0.4 10 4-13 284-293 (357)
37 KOG1438 Anthranilate phosphori 25.4 18 0.00039 26.8 -0.6 14 3-16 180-193 (373)
38 PF02481 DNA_processg_A: DNA r 25.3 94 0.002 21.0 2.9 22 46-67 51-72 (212)
39 PF02955 GSH-S_ATP: Prokaryoti 23.3 1.2E+02 0.0026 20.1 3.1 19 49-67 122-140 (173)
40 PF12000 Glyco_trans_4_3: Gkyc 23.2 94 0.002 20.6 2.6 26 49-74 37-62 (171)
41 PF07587 PSD1: Protein of unkn 23.0 79 0.0017 22.1 2.3 14 48-61 250-263 (266)
42 COG5520 O-Glycosyl hydrolase [ 22.2 63 0.0014 24.7 1.7 24 3-26 107-130 (433)
43 cd08059 MPN_prok_mb Mpr1p, Pad 22.2 99 0.0021 17.9 2.3 29 33-61 55-83 (101)
44 PF01730 UreF: UreF; InterPro 21.7 1.8E+02 0.0038 18.2 3.5 23 49-71 54-76 (146)
45 PRK13862 putative crown gall t 21.2 88 0.0019 21.4 2.1 19 52-70 171-189 (201)
46 PF00322 Endothelin: Endotheli 21.2 39 0.00085 16.7 0.3 14 5-18 17-30 (31)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=99.94 E-value=1.3e-27 Score=159.79 Aligned_cols=73 Identities=63% Similarity=1.057 Sum_probs=68.6
Q ss_pred ChhhHHHHhcCcEEecCCCCC-CCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 1 LTAVTQLAHHDMLFLPLGYNF-GRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 1 ls~~~~~~hhGMI~Vglgy~~-~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++.++.|.|||||+||+||+. ...|+++++++||||||++++++ |+||+|++.||++|++||+.+++++|||+
T Consensus 127 lta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~ 201 (203)
T KOG3135|consen 127 LTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLK 201 (203)
T ss_pred HHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhc
Confidence 478999999999999999984 44678999999999999999999 99999999999999999999999999996
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.83 E-value=1.1e-20 Score=126.92 Aligned_cols=70 Identities=46% Similarity=0.691 Sum_probs=62.5
Q ss_pred hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983 2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l 72 (74)
++..++.||||+|||.||..+. .++.++++||+|||++++++ ++++.|++.|+++|++||+|||++|+||
T Consensus 127 ~l~~~l~~~Gm~vv~~~~~~~~-~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 127 STWTTLLHHGMIIVPLPYAAQE-QMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred HHHHHHHHCCCEEeCCCccccc-ccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 4677889999999999997544 35667779999999999999 8888999999999999999999999986
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.81 E-value=1.2e-19 Score=121.52 Aligned_cols=71 Identities=49% Similarity=0.701 Sum_probs=62.5
Q ss_pred hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++..++.||||+|||.+|.... .++.+.+++|+|||++++++ |+.+.|++.|+++|++||+|||++|+||+
T Consensus 128 ~l~~~~~~~gm~vv~~~~~~~~-~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~ 199 (200)
T PRK03767 128 STHTTLLHHGMVIVGLPYAFQG-QMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLA 199 (200)
T ss_pred HHHHHHHHcCCEEeCCCCcccc-ccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999987543 24455669999999999999 88889999999999999999999999996
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.00 E-value=1.4e-09 Score=73.25 Aligned_cols=71 Identities=37% Similarity=0.460 Sum_probs=58.4
Q ss_pred hhhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 2 TAVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 2 s~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++..++.||||++|+.+|.....-...+...+|+|||+.+.+. +.++ +.+.++++++.+|+++++.+.++.
T Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 135 SLLLFFLHHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSR-PSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred HHHHHHHHcCCeEecccccccccCcccccccCCCCcccceeccccccc-cchHHHHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999997533100233458999999999999 6655 889999999999999999998875
No 5
>PRK09267 flavodoxin FldA; Validated
Probab=95.22 E-value=0.099 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=37.1
Q ss_pred HHHHhcCcEEecC----CCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983 5 TQLAHHDMLFLPL----GYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 5 ~~~~hhGMI~Vgl----gy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l 72 (74)
..+.++|+++|+. ||..... ..++++++||... |.+++|...|.+++ +.+.+|.+.+
T Consensus 107 ~~l~~~g~~~vg~~~~~gy~~~~~----~~~~~~~~~g~~~---d~~~~~~~td~~i~----~w~~~i~~~~ 167 (169)
T PRK09267 107 DIVEPRGATIVGHWPTDGYTFEAS----KAVDDGKFVGLAL---DEDNQSELTDERIE----AWVKQIKPEF 167 (169)
T ss_pred HHHHHCCCEEECccCCCCcccccc----ceeeCCEEEEEEe---cCCCchhhhHHHHH----HHHHHHHHHh
Confidence 4567889999998 8876432 2346899999874 55556666665555 4444455443
No 6
>PRK06242 flavodoxin; Provisional
Probab=93.87 E-value=0.16 Score=31.82 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 040983 48 RQPAELELEQAFHQGEYVG 66 (74)
Q Consensus 48 ~~p~~~el~~A~~~G~rva 66 (74)
..|+++|++.|+.+|++++
T Consensus 129 ~~p~~~d~~~~~~~gk~l~ 147 (150)
T PRK06242 129 GHPNEKDLENAKEFAENLK 147 (150)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 4699999999999999986
No 7
>PRK06756 flavodoxin; Provisional
Probab=78.50 E-value=3 Score=26.14 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|+++|++.++.+|+++++
T Consensus 127 ~p~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 127 TPEDEDVEKCLQFGAEFVK 145 (148)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999976
No 8
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=76.83 E-value=2.9 Score=27.46 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 040983 55 LEQAFHQGEYVGEIAK 70 (74)
Q Consensus 55 l~~A~~~G~rva~ia~ 70 (74)
-+-|..+|+|+|++||
T Consensus 108 EADa~EFGERiaELAK 123 (151)
T PF06554_consen 108 EADAQEFGERIAELAK 123 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3457889999999997
No 9
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=75.11 E-value=6.4 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=28.9
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ 67 (74)
.+|..+|+-.+.. ...+..++.|+++++.+...++.
T Consensus 116 ~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~a~~~a~ 152 (154)
T PF01590_consen 116 SGGRLIGVLSLYRTRPGRPFTEEDLALLESFAQQLAI 152 (154)
T ss_dssp ETTEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEEEECCCCCCcCHHHHHHHHHHHHHHHh
Confidence 5688999999888 55578899999999999998873
No 10
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=71.73 E-value=5.5 Score=29.24 Aligned_cols=28 Identities=43% Similarity=0.712 Sum_probs=23.6
Q ss_pred CccccceeEec-CCCCCCC-----------HHHHHHHHHH
Q 040983 34 GSSYGAGRFAA-DGSRQPA-----------ELELEQAFHQ 61 (74)
Q Consensus 34 GspyGa~~~a~-d~~~~p~-----------~~el~~A~~~ 61 (74)
|-.||.+.++. |+||.|+ +.||.+||..
T Consensus 313 ghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~ 352 (387)
T KOG0808|consen 313 GHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQY 352 (387)
T ss_pred cccccceeeecCCCCCCccccccccceEEeecchHHHHHh
Confidence 88999999999 9998885 6788888754
No 11
>PRK05569 flavodoxin; Provisional
Probab=69.85 E-value=5.5 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVG 66 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva 66 (74)
.|+++|++.|+.+|++++
T Consensus 123 ~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 123 SPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 599999999999999986
No 12
>PRK13558 bacterio-opsin activator; Provisional
Probab=68.10 E-value=14 Score=28.32 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=34.4
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l 72 (74)
.+|..||+-++..+..+..++.|+++...+|++++.-..++
T Consensus 398 ~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la~~ia~aI~~~ 438 (665)
T PRK13558 398 YRETTYGVLVVYTAEPDEIDDRERVVLEALGRAVGAAINAL 438 (665)
T ss_pred ECCEEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999884445788999999999999999877654
No 13
>PRK05568 flavodoxin; Provisional
Probab=66.48 E-value=7.5 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|+++|++.|+.+|+.+++
T Consensus 123 ~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 123 TPEGEGIEKCKALGEALAK 141 (142)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 5899999999999999864
No 14
>PRK07308 flavodoxin; Validated
Probab=66.26 E-value=8 Score=24.12 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|+++|++-++.+|+++++
T Consensus 126 ~p~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 126 AAEDEDIERLEAFAEELAA 144 (146)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999874
No 15
>PRK06703 flavodoxin; Provisional
Probab=64.60 E-value=11 Score=23.55 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.0
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHHh
Q 040983 49 QPA-ELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 49 ~p~-~~el~~A~~~G~rva~ia~~l 72 (74)
.|+ ++|++.++.+|+++++..+++
T Consensus 126 ~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 126 APETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhc
Confidence 565 799999999999999877654
No 16
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.06 E-value=5.6 Score=25.11 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.0
Q ss_pred hhhHHHHhcCcEEecCC
Q 040983 2 TAVTQLAHHDMLFLPLG 18 (74)
Q Consensus 2 s~~~~~~hhGMI~Vglg 18 (74)
|.+.++++||.|+||..
T Consensus 24 saYMpfl~nGglFVpTn 40 (117)
T COG3215 24 SAYMPFLENGGLFVPTN 40 (117)
T ss_pred HHHhHHHhcCcEEcccC
Confidence 57889999999999976
No 17
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=62.15 E-value=23 Score=20.27 Aligned_cols=37 Identities=5% Similarity=-0.023 Sum_probs=28.1
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~i 68 (74)
....++|.-.+.....+..++.|++..+.++.++|.-
T Consensus 90 ~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~a 126 (129)
T PF13492_consen 90 SRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIA 126 (129)
T ss_dssp ETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3458899888865333468999999999999998854
No 18
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=61.87 E-value=26 Score=19.42 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=32.1
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l 72 (74)
..+-++|...+.. +..+..++.|++..+..+..++....+.
T Consensus 101 ~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~ 142 (149)
T smart00065 101 ADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANA 142 (149)
T ss_pred ecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789888887 4556788999999999999988776653
No 19
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=61.49 E-value=24 Score=19.10 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 040983 48 RQPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 48 ~~p~~~el~~A~~~G~rva~i 68 (74)
.+||++|++.++.+..+..+-
T Consensus 7 ~qpS~eE~k~~e~~A~~Tvk~ 27 (49)
T PF10642_consen 7 PQPSEEEIKAAEAQANFTVKN 27 (49)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999998775443
No 20
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=60.56 E-value=27 Score=20.45 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=27.4
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~i 68 (74)
.++-.+|+.++.......+++.|++..+.++..++..
T Consensus 110 ~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~a 146 (148)
T PF13185_consen 110 SGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIAIA 146 (148)
T ss_dssp ETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4578999999888333578999999999999988754
No 21
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=57.93 E-value=12 Score=27.45 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|+++|++.|+.+|+++|+
T Consensus 373 ~p~~~~~~~~~~~g~~la~ 391 (394)
T PRK11921 373 NPDDEALDRCRSFGENFAE 391 (394)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999985
No 22
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=54.71 E-value=18 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~ 70 (74)
.|+++|++.++.+|++||+-.+
T Consensus 376 ~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 376 RPDQDALELCREHGREIARQWA 397 (479)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999995443
No 23
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=51.72 E-value=30 Score=23.73 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 49 QPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
+++++|++.-+++.+|+.++++.|.
T Consensus 91 pLs~d~ia~y~~~A~~i~~~s~~l~ 115 (195)
T PF07356_consen 91 PLSSDQIARYQFEAQRILELSKALR 115 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6699999999999999999999885
No 24
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=46.28 E-value=20 Score=21.58 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVG 66 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva 66 (74)
.|++.|++.++.+|++++
T Consensus 123 ~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 123 DPEEEDLDKCREFAKDLA 140 (140)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 588999999999999874
No 25
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=43.89 E-value=28 Score=26.09 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=31.4
Q ss_pred hhHHHHhcCcEEecCCC-CCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHH
Q 040983 3 AVTQLAHHDMLFLPLGY-NFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYV 65 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy-~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rv 65 (74)
++..|-+||.-||-+-. .+|. + ..|++||-+. .|++.+-..+||-
T Consensus 68 ~~~iLK~~GvNyvRlRvwndP~-----d--sngn~yggGn-----------nD~~k~ieiakRA 113 (403)
T COG3867 68 ALQILKNHGVNYVRLRVWNDPY-----D--SNGNGYGGGN-----------NDLKKAIEIAKRA 113 (403)
T ss_pred HHHHHHHcCcCeEEEEEecCCc-----c--CCCCccCCCc-----------chHHHHHHHHHHH
Confidence 56788999999998753 2222 3 4489998754 6777777777774
No 26
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=42.07 E-value=68 Score=18.43 Aligned_cols=39 Identities=26% Similarity=0.118 Sum_probs=30.1
Q ss_pred cCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 33 GGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 33 gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.+..+|...+.. +..+..+++|++..+..+..++....+
T Consensus 125 ~~~~~G~l~~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 164 (175)
T COG2203 125 QGELLGLLCVHDSEPRRQWSEEELELLEELAEQVAIAIER 164 (175)
T ss_pred CCEeeEEeeeeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346788877777 554468999999999999998866554
No 27
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=38.52 E-value=25 Score=23.74 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q 040983 49 QPAELELEQAFHQGEYVGEIAKEL 72 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~l 72 (74)
.|=.+|++.|+.+|+|+...+..+
T Consensus 7 ~pYlGd~~a~r~mGerIGRaaQ~F 30 (173)
T PF14419_consen 7 MPYLGDLKACRKMGERIGRAAQAF 30 (173)
T ss_pred ccccCCHHHHHHHHHHHhHHHhhc
Confidence 566789999999999999887654
No 28
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=38.07 E-value=25 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhh
Q 040983 61 QGEYVGEIAKELK 73 (74)
Q Consensus 61 ~G~rva~ia~~l~ 73 (74)
.|+.||++++.|.
T Consensus 28 lGqkIa~l~kdw~ 40 (64)
T PF05596_consen 28 LGQKIAQLAKDWN 40 (64)
T ss_pred hHHHHHHHHHHHH
Confidence 5888888888774
No 29
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=35.97 E-value=55 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 040983 50 PAELELEQAFHQGEYVGE 67 (74)
Q Consensus 50 p~~~el~~A~~~G~rva~ 67 (74)
+++.-.+.|+.+|+.+|+
T Consensus 12 ~~~~~~~~A~~lg~~La~ 29 (159)
T TIGR00725 12 KSEELYEIAYRLGKELAK 29 (159)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 677899999999999986
No 30
>PLN00174 predicted protein; Provisional
Probab=35.19 E-value=16 Score=24.45 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHhc-CcEEecCCCCCC
Q 040983 6 QLAHH-DMLFLPLGYNFG 22 (74)
Q Consensus 6 ~~~hh-GMI~Vglgy~~~ 22 (74)
|..-. +|||||++|.+.
T Consensus 129 F~~ly~~mI~~~~~~~~~ 146 (160)
T PLN00174 129 IYTIWEWMIWVPPDYVSA 146 (160)
T ss_pred HHHHHHHHHcCCCCcccc
Confidence 44456 899999999863
No 31
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=34.36 E-value=32 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|+++|++-|+..|+.+|+
T Consensus 370 ~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 370 RPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred cCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999874
No 32
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=32.80 E-value=48 Score=22.25 Aligned_cols=13 Identities=38% Similarity=0.463 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQ 61 (74)
Q Consensus 49 ~p~~~el~~A~~~ 61 (74)
.||+.||.+|++|
T Consensus 94 ~PSdaELRIAQAQ 106 (169)
T PF10759_consen 94 TPSDAELRIAQAQ 106 (169)
T ss_pred CCchHHHHHHHHH
Confidence 6999999999865
No 33
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=30.96 E-value=40 Score=20.70 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.6
Q ss_pred hhHHHHhcCcEEecCCC
Q 040983 3 AVTQLAHHDMLFLPLGY 19 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy 19 (74)
+...+.++||++||.++
T Consensus 128 l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 128 LRQILDYLGMIVVPSGV 144 (152)
T ss_dssp HHHHHHHTTBEEECCSE
T ss_pred HHHHHHHCCCEEcCCcE
Confidence 56678899999999753
No 34
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=29.62 E-value=1.7e+02 Score=22.22 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=29.6
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIA 69 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia 69 (74)
.+|.++|+-.+.. ...+..++.|++....++..+|...
T Consensus 118 ~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA~~ia~aI 156 (534)
T TIGR01817 118 ADSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTV 156 (534)
T ss_pred CCCEEEEEEEEEeccccccccHHHHHHHHHHHHHHHHHH
Confidence 5688999998887 4444558999999988888888654
No 35
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=27.37 E-value=94 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 040983 46 GSRQPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 46 ~~~~p~~~el~~A~~~G~rva~ 67 (74)
|+|.|++..++.|+.+++.+++
T Consensus 51 GsR~~s~~~~~~a~~l~~~l~~ 72 (220)
T TIGR00732 51 GTRRPTKYGERWTRKLAEELAK 72 (220)
T ss_pred cCCCCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999888765
No 36
>PF02327 BChl_A: Bacteriochlorophyll A protein; InterPro: IPR003426 Bacteriochlorophyll A (or FMO) protein is involved in the energy transfer system of photosynthetic bacteria, such as Green Sulphur Bacteria. Bacteriochlorophyll A acts as a light-harvesting complex that directs light energy from the chlorosomes attached to the cell membrane to the reaction centre []. The protein forms a homotrimer, with each monomer unit containing seven molecules of bacteriochlorophyll A.; GO: 0015979 photosynthesis; PDB: 3EOJ_A 3ENI_C 3BSD_A.
Probab=26.21 E-value=19 Score=26.43 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=8.2
Q ss_pred hHHHHhcCcE
Q 040983 4 VTQLAHHDML 13 (74)
Q Consensus 4 ~~~~~hhGMI 13 (74)
+.+|.||||+
T Consensus 284 liplvHHGmv 293 (357)
T PF02327_consen 284 LIPLVHHGMV 293 (357)
T ss_dssp CHHHHHHHTT
T ss_pred ccceeeccce
Confidence 4689999995
No 37
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=25.42 E-value=18 Score=26.79 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=12.6
Q ss_pred hhHHHHhcCcEEec
Q 040983 3 AVTQLAHHDMLFLP 16 (74)
Q Consensus 3 ~~~~~~hhGMI~Vg 16 (74)
++.+|+||+|-+|+
T Consensus 180 l~aPm~Hp~mk~V~ 193 (373)
T KOG1438|consen 180 LMAPMYHPAMKIVG 193 (373)
T ss_pred Eechhhcccccchh
Confidence 57799999999998
No 38
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=25.25 E-value=94 Score=21.04 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 040983 46 GSRQPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 46 ~~~~p~~~el~~A~~~G~rva~ 67 (74)
|+|.|++.-++.++.+++.+++
T Consensus 51 GsR~~s~~g~~~a~~l~~~l~~ 72 (212)
T PF02481_consen 51 GSRNPSEYGLKFAKKLARELAK 72 (212)
T ss_dssp --SS--HHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhh
Confidence 5689999999999999998876
No 39
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=23.31 E-value=1.2e+02 Score=20.07 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.+++.|+++|+..+.++.+
T Consensus 122 ~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 122 ELTEREREICEQIGPKLRE 140 (173)
T ss_dssp E--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 6889999999999988754
No 40
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=23.20 E-value=94 Score=20.65 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983 49 QPAELELEQAFHQGEYVGEIAKELKH 74 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~l~~ 74 (74)
-|-..+.+.+-..|+.+++.+.+|++
T Consensus 37 ~~~~~~~e~~~~rg~av~~a~~~L~~ 62 (171)
T PF12000_consen 37 HPYVRDFEAAVLRGQAVARAARQLRA 62 (171)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999999999999999863
No 41
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=22.98 E-value=79 Score=22.09 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHH
Q 040983 48 RQPAELELEQAFHQ 61 (74)
Q Consensus 48 ~~p~~~el~~A~~~ 61 (74)
|.|++.|++.|+.+
T Consensus 250 R~Pt~~E~~~~~~~ 263 (266)
T PF07587_consen 250 RPPTAAELAAAREF 263 (266)
T ss_pred CCCCHHHHHHHHHH
Confidence 78899999888754
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=63 Score=24.73 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=18.4
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCc
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMF 26 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~ 26 (74)
+--....||||+...|.++|..|.
T Consensus 107 ~Ak~~in~g~ivfASPWspPa~Mk 130 (433)
T COG5520 107 TAKSAINPGMIVFASPWSPPASMK 130 (433)
T ss_pred cchhhcCCCcEEEecCCCCchhhh
Confidence 334456799999999999887553
No 43
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=22.22 E-value=99 Score=17.91 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=18.8
Q ss_pred cCccccceeEecCCCCCCCHHHHHHHHHH
Q 040983 33 GGSSYGAGRFAADGSRQPAELELEQAFHQ 61 (74)
Q Consensus 33 gGspyGa~~~a~d~~~~p~~~el~~A~~~ 61 (74)
+++..|..|-=.+++..||+.|++.++..
T Consensus 55 ~~~~v~i~HsHP~g~~~PS~~D~~~~~~~ 83 (101)
T cd08059 55 GMKVVGLVHSHPSGSCRPSEADLSLFTRF 83 (101)
T ss_pred CCcEEEEEecCcCCCCCCCHHHHHHHHhc
Confidence 44555544422267778999999987653
No 44
>PF01730 UreF: UreF; InterPro: IPR002639 This family consists of the urease accessory protein, UreF. The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid []. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein [].; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_A 3CXN_B 2WGL_A 3O1Q_B.
Probab=21.67 E-value=1.8e+02 Score=18.16 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.++.+-++..+.+|+++.++++.
T Consensus 54 ~~~~e~R~as~~~G~~ll~~~~~ 76 (146)
T PF01730_consen 54 KLSRELREASRQMGRALLRLARE 76 (146)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46677788889999999999876
No 45
>PRK13862 putative crown gall tumor protein VirC2; Provisional
Probab=21.23 E-value=88 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040983 52 ELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 52 ~~el~~A~~~G~rva~ia~ 70 (74)
..-+++||+||..+|.-|-
T Consensus 171 PlgletaRAFGhKLAtaAL 189 (201)
T PRK13862 171 PLGLETARAFGHKLATAAL 189 (201)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 3558899999999987654
No 46
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=21.22 E-value=39 Score=16.66 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=8.4
Q ss_pred HHHHhcCcEEecCC
Q 040983 5 TQLAHHDMLFLPLG 18 (74)
Q Consensus 5 ~~~~hhGMI~Vglg 18 (74)
..|.|.+.|||-.+
T Consensus 17 ~yFChldiIW~nt~ 30 (31)
T PF00322_consen 17 VYFCHLDIIWVNTP 30 (31)
T ss_dssp HHHHHCTTT-S---
T ss_pred heeecccEEEecCC
Confidence 46889999998754
Done!