Query 040983
Match_columns 74
No_of_seqs 118 out of 842
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7n_A Flavodoxin, WRBA-like p 99.3 9.5E-12 3.3E-16 81.1 6.3 72 2-73 113-188 (193)
2 3b6i_A Flavoprotein WRBA; flav 99.2 2.2E-10 7.5E-15 73.6 8.5 71 3-74 127-198 (198)
3 2a5l_A Trp repressor binding p 98.7 9.5E-08 3.3E-12 61.2 7.2 69 3-74 131-200 (200)
4 2zki_A 199AA long hypothetical 98.6 1.1E-07 3.7E-12 61.2 5.8 66 3-73 130-195 (199)
5 1ydg_A Trp repressor binding p 98.5 3.2E-07 1.1E-11 59.6 6.0 64 3-73 138-201 (211)
6 2ark_A Flavodoxin; FMN, struct 97.4 0.00023 7.8E-09 45.5 4.4 58 3-73 111-169 (188)
7 3cit_A Sensor histidine kinase 88.4 1.4 5E-05 28.2 5.8 37 33-69 108-145 (160)
8 3fni_A Putative diflavin flavo 84.0 1.3 4.3E-05 27.4 3.7 22 49-70 127-148 (159)
9 3hly_A Flavodoxin-like domain; 83.8 1.1 3.9E-05 27.5 3.4 23 49-71 122-144 (161)
10 2q9u_A A-type flavoprotein; fl 76.6 3.2 0.00011 28.7 4.1 25 49-73 383-407 (414)
11 1f35_A Olfactory marker protei 73.2 2.5 8.7E-05 26.9 2.6 16 56-71 119-134 (162)
12 2w3g_A DOSS, two component sen 73.1 10 0.00034 21.2 5.3 40 32-71 105-145 (153)
13 5nul_A Flavodoxin; electron tr 72.5 1.2 3.9E-05 26.3 0.9 19 49-68 120-138 (138)
14 3oov_A Methyl-accepting chemot 72.5 11 0.00038 21.5 5.4 40 32-71 122-162 (169)
15 3ci6_A Phosphoenolpyruvate-pro 68.7 13 0.00045 20.8 5.3 40 32-71 124-163 (171)
16 3hcy_A Putative two-component 65.8 16 0.00055 20.7 5.5 39 33-71 101-139 (151)
17 3e0y_A Conserved domain protei 63.9 18 0.00062 20.7 5.5 40 32-71 127-166 (181)
18 2zmf_A CAMP and CAMP-inhibited 60.2 22 0.00077 20.5 5.0 39 32-70 136-175 (189)
19 3trc_A Phosphoenolpyruvate-pro 59.8 22 0.00074 20.2 5.2 40 32-71 122-161 (171)
20 2q62_A ARSH; alpha/beta, flavo 59.0 22 0.00074 23.6 5.2 23 51-73 190-212 (247)
21 2vjw_A GAF-B, GAF family prote 58.7 21 0.00073 21.1 4.7 37 32-68 94-131 (149)
22 2e4s_A CAMP and CAMP-inhibited 54.4 29 0.001 20.1 5.0 39 32-70 136-175 (189)
23 4glq_A Methyl-accepting chemot 53.0 34 0.0012 20.8 5.1 39 32-70 114-153 (171)
24 3p01_A Two-component response 51.2 36 0.0012 20.1 5.0 39 32-70 140-178 (184)
25 2qyb_A Membrane protein, putat 50.7 35 0.0012 19.8 5.4 39 33-71 118-158 (181)
26 2k2n_A Sensor protein, SYB-CPH 49.8 37 0.0013 19.9 5.5 39 32-70 128-166 (172)
27 2lb5_A Sensor histidine kinase 47.0 45 0.0015 20.1 5.2 40 32-71 158-197 (208)
28 1e5d_A Rubredoxin\:oxygen oxid 46.2 24 0.00081 23.9 3.8 23 49-71 376-398 (402)
29 2ohh_A Type A flavoprotein FPR 45.8 16 0.00054 24.9 2.9 22 49-70 382-403 (404)
30 3k2n_A Sigma-54-dependent tran 45.5 42 0.0014 19.2 5.1 39 32-70 127-165 (177)
31 2fzv_A Putative arsenical resi 44.1 47 0.0016 22.6 5.0 23 51-73 215-237 (279)
32 3sbx_A Putative uncharacterize 43.3 36 0.0012 21.9 4.2 21 47-67 22-42 (189)
33 1mc0_A 3',5'-cyclic nucleotide 40.8 69 0.0023 20.9 5.4 38 34-71 299-337 (368)
34 1ykd_A Adenylate cyclase; GAF 37.8 87 0.003 20.8 5.6 39 33-71 318-376 (398)
35 3qua_A Putative uncharacterize 36.6 39 0.0013 21.9 3.5 20 48-67 32-51 (199)
36 3o5y_A Sensor protein; GAF dom 35.4 70 0.0024 19.3 4.5 37 32-68 104-140 (165)
37 1ycg_A Nitric oxide reductase; 32.2 27 0.00092 23.6 2.3 21 49-69 376-396 (398)
38 2iz6_A Molybdenum cofactor car 32.0 47 0.0016 21.0 3.3 18 50-67 26-43 (176)
39 1rli_A Trp repressor binding p 25.1 5.2 0.00018 24.3 -2.2 18 50-67 166-183 (184)
40 3ibj_A CGMP-dependent 3',5'-cy 24.5 1E+02 0.0034 22.9 4.4 37 34-70 299-336 (691)
41 2kes_A Synphilin-1; synphillin 21.8 92 0.0031 15.8 3.1 19 55-73 3-21 (48)
42 1ug2_A 2610100B20RIK gene prod 21.4 30 0.001 20.4 0.8 19 55-73 45-66 (95)
43 1t35_A Hypothetical protein YV 20.8 1.2E+02 0.0041 19.1 3.7 18 50-67 14-31 (191)
44 3pim_A Peptide methionine sulf 20.2 25 0.00086 23.0 0.3 31 9-39 2-32 (187)
45 3f6r_A Flavodoxin; FMN binding 20.0 37 0.0013 19.7 1.0 18 49-67 129-146 (148)
No 1
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.26 E-value=9.5e-12 Score=81.11 Aligned_cols=72 Identities=22% Similarity=0.191 Sum_probs=46.0
Q ss_pred hhhHHHHhcCcEEecCCCCCCCC--CccccccccCccccceeEec-CCCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 2 TAVTQLAHHDMLFLPLGYNFGRG--MFKLDEVKGGSSYGAGRFAA-DGSR-QPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 2 s~~~~~~hhGMI~Vglgy~~~~~--~~~~~~~~gGspyGa~~~a~-d~~~-~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++..++.||||+||+.+|..... ....+.+++|+|||++++++ |+.+ .|+++|++.|+.+|+|+|+++++|+
T Consensus 113 ~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~ 188 (193)
T 3d7n_A 113 YLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHK 188 (193)
T ss_dssp HHHHHHHHTTCEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999998864210 00012237799999999986 6644 4789999999999999999999985
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.15 E-value=2.2e-10 Score=73.63 Aligned_cols=71 Identities=46% Similarity=0.787 Sum_probs=58.7
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELKH 74 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~~ 74 (74)
+..++.++||++|+.++..+. +...++++++++||.+++++ ++...|+++|++.|+.+|+++++.+++|+.
T Consensus 127 l~~~l~~~g~~~v~~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 127 TWTTLAHHGMVIVPIGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp HHHHHHHTTCEECCCTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCcEEECCCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556889999999999986533 23334568899999999988 666689999999999999999999999863
No 3
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=98.65 E-value=9.5e-08 Score=61.23 Aligned_cols=69 Identities=36% Similarity=0.536 Sum_probs=50.0
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKELKH 74 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~l~~ 74 (74)
+..++.++||.+|+.++.++. + .+.++++++||...+++ ++...|++++++.|+.+|+++++.+++|+.
T Consensus 131 l~~~l~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 131 MLLPLLHHGMLVLGIPYSEPA-L--LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp HHHHHHHTTCEECCCCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEECCCCCCcc-c--cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456778899999998876443 2 23347789999999887 665679999999999999999999999863
No 4
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=98.57 E-value=1.1e-07 Score=61.17 Aligned_cols=66 Identities=32% Similarity=0.579 Sum_probs=52.2
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
+..++.++||.+|+.++..+. +.++. +++++||.+.+++.. .|++++++.|+.+|+++++.+++|+
T Consensus 130 l~~~l~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~a~~~g~~l~~~~~~l~ 195 (199)
T 2zki_A 130 MSTYAYHFGMIIVPIGYGIPE-LFQTT--TGGGPYGATHLGSKE--ELDEMERKIARFQGKRITEVAKAIK 195 (199)
T ss_dssp HTHHHHHHTCEECCCTTCSTH-HHHCS--SSCCSSCCCCBSSCS--SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeCCCcCCcc-ccccc--cCCCCcceeeecCCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999998876433 22223 778999998776521 5889999999999999999999886
No 5
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=98.47 E-value=3.2e-07 Score=59.65 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=51.1
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
+..++.++||.+|+.+|.++.. .. ++|++||+..+.++ ..|++++++.|+.+|+++++.+++|+
T Consensus 138 l~~~l~~~g~~~v~~~~~~~~~---~~--~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~ 201 (211)
T 1ydg_A 138 LYMTAMHWGAVLTPPGYTDEVI---FK--SGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLL 201 (211)
T ss_dssp HHHHHHTTTCEECCCTTCSHHH---HH--TTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeCCCCCChhh---cc--CCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999988764321 12 67899999887642 35889999999999999999999885
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=97.36 E-value=0.00023 Score=45.52 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=40.2
Q ss_pred hhHHHHhcCcEEecCCCCCCCCCccccccccCccccceeEecCCCCCCC-HHHHHHHHHHHHHHHHHHHHhh
Q 040983 3 AVTQLAHHDMLFLPLGYNFGRGMFKLDEVKGGSSYGAGRFAADGSRQPA-ELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 3 ~~~~~~hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa~~~a~d~~~~p~-~~el~~A~~~G~rva~ia~~l~ 73 (74)
+..++.++||.+++.++-... ...++||..... .|+ +++++.|+.+|+++++.+++++
T Consensus 111 l~~~l~~~g~~~~~~~~~~~~--------~~~~~~g~~~~~-----~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 111 ILTMLMNFGFLVFGVTDYVGK--------KFTLHYGAVVAG-----EPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHTTCEECCEEEEEET--------TEEESSSEEEES-----SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCcEEeCCCccccc--------cccCCCcceeec-----CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677899999985431100 112356654432 377 9999999999999999999875
No 7
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=88.44 E-value=1.4 Score=28.21 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=29.6
Q ss_pred cCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHH
Q 040983 33 GGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIA 69 (74)
Q Consensus 33 gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia 69 (74)
.|.+.|+.-+.+ .+...|+++|++..+.++..+|...
T Consensus 108 ~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~ai 145 (160)
T 3cit_A 108 DEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHL 145 (160)
T ss_dssp SSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 378999888877 3335799999999999998887543
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=84.04 E-value=1.3 Score=27.40 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~ 70 (74)
.|+++|++.|+.+|+.+++-.+
T Consensus 127 ~P~~~dl~~~~~~g~~la~~~~ 148 (159)
T 3fni_A 127 TPTENTYKLCEEAGTDLGQWVT 148 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999987654
No 9
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=83.79 E-value=1.1 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.|+++|++.|+.+|+.+++..++
T Consensus 122 ~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 122 QPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999887654
No 10
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=76.61 E-value=3.2 Score=28.71 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 040983 49 QPAELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~l~ 73 (74)
.|++++++.|+.+|+++++.+++++
T Consensus 383 ~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 383 NYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999888774
No 11
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=73.17 E-value=2.5 Score=26.90 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 040983 56 EQAFHQGEYVGEIAKE 71 (74)
Q Consensus 56 ~~A~~~G~rva~ia~~ 71 (74)
+-|..+|+|+|++||-
T Consensus 119 ADaqEFGERiaeLAki 134 (162)
T 1f35_A 119 ADALEFGERLSDLAKI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4578999999999973
No 12
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=73.07 E-value=10 Score=21.21 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=32.5
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
..|..+|+..+.. ...+..++.|++..+.++..++....+
T Consensus 105 ~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~ 145 (153)
T 2w3g_A 105 VRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVAN 145 (153)
T ss_dssp ETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899988888 554678999999999999999876553
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=72.49 E-value=1.2 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~i 68 (74)
.|+++| +.|+.+|+++++|
T Consensus 120 ~p~~~d-~~~~~~~~~l~~~ 138 (138)
T 5nul_A 120 EPDEAE-QDCIEFGKKIANI 138 (138)
T ss_dssp SCGGGH-HHHHHHHHHHHTC
T ss_pred CCCHHH-HHHHHHHHHHhcC
Confidence 488999 9999999999864
No 14
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=72.46 E-value=11 Score=21.47 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=32.3
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
..|..+|+..+.. ...+..++.|++..+.++..+|....+
T Consensus 122 ~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a~~~a~ai~n 162 (169)
T 3oov_A 122 VKGEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQASSAIVR 162 (169)
T ss_dssp ETTEEEEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCcEEEEEEEEccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999888 554568999999999999999876654
No 15
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=68.69 E-value=13 Score=20.83 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=31.9
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.+|..+|+..+.....+..++.|++..+.++..++....+
T Consensus 124 ~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 124 YRRKVMGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp ETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899888887333578999999999999999876654
No 16
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=65.77 E-value=16 Score=20.70 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=30.6
Q ss_pred cCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 33 GGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 33 gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.|..+|+..+.....+.+++.|++..+.++..++....+
T Consensus 101 ~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~ 139 (151)
T 3hcy_A 101 EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQR 139 (151)
T ss_dssp SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478889888877333568999999999999998866554
No 17
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=63.91 E-value=18 Score=20.69 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=31.7
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.+|..+|+..+.....+..++.|++..+.++..++.....
T Consensus 127 ~~~~~iGvl~~~~~~~~~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 127 DKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp CSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCeEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899998888324577899999999999999866543
No 18
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=60.21 E-value=22 Score=20.51 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=30.1
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
..|..+|+..+.. ...+..++.|++..+.++..+|....
T Consensus 136 ~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~ 175 (189)
T 2zmf_A 136 SRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ETTEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3477888877765 55567799999999999999885543
No 19
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=59.81 E-value=22 Score=20.20 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=31.7
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.+|..+|+..+.....+..++.|++..+.++..+|....+
T Consensus 122 ~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 122 EQGELLGILVIQQLESHHFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp ETTEEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899988888223578999999999999999866553
No 20
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=59.01 E-value=22 Score=23.56 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Q 040983 51 AELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 51 ~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++.-++.++.++++++..+++++
T Consensus 190 d~~~~~~l~~~~~~l~~~~~~l~ 212 (247)
T 2q62_A 190 PSSYYDRVVDVMEELVKFTLLTR 212 (247)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999885
No 21
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=58.74 E-value=21 Score=21.08 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=30.0
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~i 68 (74)
..|...|+-.+.. ...+..++.|++++..+..+.|..
T Consensus 94 ~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~a 131 (149)
T 2vjw_A 94 ATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVA 131 (149)
T ss_dssp ETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577889888887 465678999999999999988744
No 22
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=54.44 E-value=29 Score=20.09 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=31.3
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
.+|..+|+-.+.. ...+..++.|++....++..+|....
T Consensus 136 ~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~ 175 (189)
T 2e4s_A 136 SRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ETTEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578899888888 55447899999999999999886544
No 23
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=52.99 E-value=34 Score=20.81 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=32.4
Q ss_pred ccCccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
.+|..||.-.+-. +..|.-++.|++..+..+..++-...
T Consensus 114 ~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~iAi~ 153 (171)
T 4glq_A 114 IDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLE 153 (171)
T ss_dssp ETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999888877 77788899999999999998885443
No 24
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=51.19 E-value=36 Score=20.12 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=31.1
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
..|..+|+..+..+..+..++.|++..+.++..+|-...
T Consensus 140 ~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi~ 178 (184)
T 3p01_A 140 YRNEMLGVLSLQWQQPISLREDELTLIHLSAQLVAIALT 178 (184)
T ss_dssp ETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457889998884455567899999999999999886544
No 25
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=50.71 E-value=35 Score=19.79 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=31.9
Q ss_pred cCc-cccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 33 GGS-SYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 33 gGs-pyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.+. .+|+-.+.. ...+..++.|++..+.++..++....+
T Consensus 118 ~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la~~~a~al~~ 158 (181)
T 2qyb_A 118 KGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQLAQAVKI 158 (181)
T ss_dssp TTSCCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456 899988887 665678999999999999999876654
No 26
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=49.82 E-value=37 Score=19.91 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=30.8
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
..|..||.-.+.....+..++.|++..+..+..+|....
T Consensus 128 ~~~~l~G~l~~~~~~~~~~~~~e~~~l~~la~~~a~ai~ 166 (172)
T 2k2n_A 128 HHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIA 166 (172)
T ss_dssp CSSCCCEEEEEEECSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457889988777644467899999999999999886554
No 27
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=47.05 E-value=45 Score=20.08 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=31.5
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
..|..||.-.+.....+..++.|++..+..+..+|....+
T Consensus 158 ~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 158 HHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 197 (208)
T ss_dssp ETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899887776434678999999999999999865543
No 28
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=46.21 E-value=24 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.|++++++.++.+|+++++..+.
T Consensus 376 ~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 376 VPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999987664
No 29
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=45.84 E-value=16 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia~ 70 (74)
.|++++++.++.+|+++++.++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 382 VPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999987654
No 30
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=45.47 E-value=42 Score=19.22 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=30.5
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
.++..+|+..+.....+..++.|++..+.++..+|....
T Consensus 127 ~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai~ 165 (177)
T 3k2n_A 127 SGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAVS 165 (177)
T ss_dssp ETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456889988888733347899999999999999886544
No 31
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=44.10 E-value=47 Score=22.56 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhh
Q 040983 51 AELELEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 51 ~~~el~~A~~~G~rva~ia~~l~ 73 (74)
++.-++.++.++++++..+++++
T Consensus 215 d~~~~~~l~~~~~~l~~~~~~l~ 237 (279)
T 2fzv_A 215 PSPYYDRIADVMEELVRFTALVR 237 (279)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999875
No 32
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=43.31 E-value=36 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 040983 47 SRQPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 47 ~~~p~~~el~~A~~~G~rva~ 67 (74)
++.+++...+.|+.+|+.+|+
T Consensus 22 s~~~~~~~~~~A~~lg~~la~ 42 (189)
T 3sbx_A 22 AAPTHPELLELAGAVGAAIAA 42 (189)
T ss_dssp SSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH
Confidence 345677888999999999985
No 33
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=40.79 E-value=69 Score=20.94 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=31.1
Q ss_pred CccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 34 GSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 34 GspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
|..+|+..+.. ...+..++.|++..+.++..+|....+
T Consensus 299 ~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 299 QEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp SCEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999988887 554568999999999999998866553
No 34
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=37.81 E-value=87 Score=20.83 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=31.1
Q ss_pred cCccccceeEec-CC-------------------CCCCCHHHHHHHHHHHHHHHHHHHH
Q 040983 33 GGSSYGAGRFAA-DG-------------------SRQPAELELEQAFHQGEYVGEIAKE 71 (74)
Q Consensus 33 gGspyGa~~~a~-d~-------------------~~~p~~~el~~A~~~G~rva~ia~~ 71 (74)
.|..+|+..+.. .. .+..++.|++..+.++..+|....+
T Consensus 318 ~~~~iGvl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 318 DQELIGVTQLVNKKKTGEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp SSCEEEEEEEEEECCSSCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEecCCcccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 477889888877 43 4678999999999999998866543
No 35
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=36.60 E-value=39 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 040983 48 RQPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 48 ~~p~~~el~~A~~~G~rva~ 67 (74)
|.+++.-.+.|+.+|+.+|+
T Consensus 32 ~~~~~~~~~~A~~lg~~La~ 51 (199)
T 3qua_A 32 GPTHPELLELAAEVGSSIAA 51 (199)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45778889999999999985
No 36
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=35.38 E-value=70 Score=19.26 Aligned_cols=37 Identities=5% Similarity=-0.129 Sum_probs=29.6
Q ss_pred ccCccccceeEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 040983 32 KGGSSYGAGRFAADGSRQPAELELEQAFHQGEYVGEI 68 (74)
Q Consensus 32 ~gGspyGa~~~a~d~~~~p~~~el~~A~~~G~rva~i 68 (74)
..|...|+-.+........++.|++..+.+..++|-.
T Consensus 104 ~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aia 140 (165)
T 3o5y_A 104 SKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVS 140 (165)
T ss_dssp CSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578899888887333567899999999999998854
No 37
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=32.22 E-value=27 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGEIA 69 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ia 69 (74)
.|++.+++.++.+|+++++.+
T Consensus 376 ~p~~~~~~~~~~~~~~l~~~~ 396 (398)
T 1ycg_A 376 VPRGEDLQRCYELGRKIAARI 396 (398)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998764
No 38
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=31.97 E-value=47 Score=21.02 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 040983 50 PAELELEQAFHQGEYVGE 67 (74)
Q Consensus 50 p~~~el~~A~~~G~rva~ 67 (74)
+++...+.|+.+|+.+|+
T Consensus 26 ~~~~~~~~A~~lg~~La~ 43 (176)
T 2iz6_A 26 TAENQLVMANELGKQIAT 43 (176)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 778999999999999986
No 39
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=25.11 E-value=5.2 Score=24.28 Aligned_cols=18 Identities=11% Similarity=-0.103 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 040983 50 PAELELEQAFHQGEYVGE 67 (74)
Q Consensus 50 p~~~el~~A~~~G~rva~ 67 (74)
+++++++.|+.+|+++|.
T Consensus 166 ~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 166 RDHQALSAASRLLKRSDA 183 (184)
T ss_dssp GCHHHHHHHHHTTCCCCC
T ss_pred cCHHHHHHHHHhhhhccc
Confidence 468999999999998874
No 40
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=24.48 E-value=1e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=29.0
Q ss_pred CccccceeEec-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040983 34 GSSYGAGRFAA-DGSRQPAELELEQAFHQGEYVGEIAK 70 (74)
Q Consensus 34 GspyGa~~~a~-d~~~~p~~~el~~A~~~G~rva~ia~ 70 (74)
|..+|+..+.. ...+..++.|++..+.++..+|....
T Consensus 299 g~viGVL~l~~~~~~~~f~~~d~~ll~~lA~~~aiAIe 336 (691)
T 3ibj_A 299 QEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIA 336 (691)
T ss_dssp SCCCEEEEEEEESSSSSCCTTTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 68899888887 55456788999999999888875443
No 41
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=21.82 E-value=92 Score=15.82 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 040983 55 LEQAFHQGEYVGEIAKELK 73 (74)
Q Consensus 55 l~~A~~~G~rva~ia~~l~ 73 (74)
.++|-.+...|.+++|+|+
T Consensus 3 vetcmslasqvvkltkql~ 21 (48)
T 2kes_A 3 VETCMSLASQVVKLTKQLK 21 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888875
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=21.39 E-value=30 Score=20.42 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.2
Q ss_pred HHHHHHHHH---HHHHHHHHhh
Q 040983 55 LEQAFHQGE---YVGEIAKELK 73 (74)
Q Consensus 55 l~~A~~~G~---rva~ia~~l~ 73 (74)
|..++.+|. +|+.|+++|.
T Consensus 45 L~~cQ~~G~s~~tFa~iA~~L~ 66 (95)
T 1ug2_A 45 LTMCQEQGAQPHTFSVISQQLG 66 (95)
T ss_dssp HHHHHHTTSCTTTHHHHHHHHS
T ss_pred HHHHHhcCCChhHHHHHHHHHc
Confidence 455566666 8999999984
No 43
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=20.75 E-value=1.2e+02 Score=19.14 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 040983 50 PAELELEQAFHQGEYVGE 67 (74)
Q Consensus 50 p~~~el~~A~~~G~rva~ 67 (74)
+++...+.|+.+|+.+|+
T Consensus 14 ~~~~~~~~A~~lg~~La~ 31 (191)
T 1t35_A 14 GNEAYKRKAAELGVYMAE 31 (191)
T ss_dssp SSTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 567889999999999886
No 44
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=20.18 E-value=25 Score=22.98 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=18.1
Q ss_pred hcCcEEecCCCCCCCCCccccccccCccccc
Q 040983 9 HHDMLFLPLGYNFGRGMFKLDEVKGGSSYGA 39 (74)
Q Consensus 9 hhGMI~Vglgy~~~~~~~~~~~~~gGspyGa 39 (74)
||||--|+........-...-...||..||+
T Consensus 2 ~~~~~~~~~~~~~~p~~~~~a~fagGCFWg~ 32 (187)
T 3pim_A 2 HHGSSLISKTIKYDPAKDKLITLACGCFWGT 32 (187)
T ss_dssp CSSGGGSCSSCCCCTTTCEEEEEESSCHHHH
T ss_pred CCCCCCCCcccccCCCCCcEEEEecCCchhh
Confidence 8999888866533221011223478888884
No 45
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.04 E-value=37 Score=19.70 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040983 49 QPAELELEQAFHQGEYVGE 67 (74)
Q Consensus 49 ~p~~~el~~A~~~G~rva~ 67 (74)
.|++ |++.++.+|+++++
T Consensus 129 ~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 129 DASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp SGGG-CHHHHHHHHHHHHH
T ss_pred Ccch-HHHHHHHHHHHHHh
Confidence 4777 99999999998864
Done!