Query 040984
Match_columns 51
No_of_seqs 129 out of 1028
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 99.8 1.5E-19 3.2E-24 109.0 4.0 50 2-51 326-375 (375)
2 PTZ00466 actin-like protein; P 99.8 6.3E-19 1.4E-23 106.5 4.0 50 2-51 331-380 (380)
3 PTZ00281 actin; Provisional 99.7 1E-18 2.2E-23 105.2 4.0 50 2-51 327-376 (376)
4 KOG0676 Actin and related prot 99.7 6.5E-19 1.4E-23 106.7 2.7 51 1-51 322-372 (372)
5 PF00022 Actin: Actin; InterP 99.7 4.7E-19 1E-23 105.9 0.4 50 2-51 343-393 (393)
6 PTZ00004 actin-2; Provisional 99.7 3.6E-18 7.8E-23 102.8 4.1 50 2-51 329-378 (378)
7 PTZ00280 Actin-related protein 99.7 8.4E-18 1.8E-22 102.1 3.5 48 2-49 361-408 (414)
8 smart00268 ACTIN Actin. ACTIN 99.7 1.9E-17 4.1E-22 98.8 3.9 50 2-51 324-373 (373)
9 COG5277 Actin and related prot 99.6 2.9E-16 6.2E-21 96.9 1.9 50 2-51 395-444 (444)
10 cd00012 ACTIN Actin; An ubiqui 99.6 6.5E-16 1.4E-20 92.3 3.4 47 3-49 325-371 (371)
11 KOG0679 Actin-related protein 99.5 7.3E-16 1.6E-20 93.8 0.3 49 2-50 373-425 (426)
12 KOG0680 Actin-related protein 99.4 3.5E-13 7.6E-18 81.3 3.0 50 2-51 350-399 (400)
13 KOG0681 Actin-related protein 99.2 4.6E-12 1E-16 80.1 0.2 48 2-49 591-638 (645)
14 KOG0677 Actin-related protein 99.0 1.6E-10 3.4E-15 68.9 1.5 47 2-48 338-385 (389)
15 KOG0678 Actin-related protein 99.0 9.8E-11 2.1E-15 71.1 0.4 47 2-48 361-407 (415)
16 KOG0797 Actin-related protein 98.8 8.9E-10 1.9E-14 69.7 0.2 49 2-50 563-614 (618)
17 PF09693 Phage_XkdX: Phage unc 75.7 1.8 3.9E-05 18.7 1.0 11 31-41 25-35 (40)
18 TIGR01669 phage_XkdX phage unc 73.1 1.9 4.1E-05 19.2 0.8 16 26-41 24-40 (45)
19 KOG2960 Protein involved in th 54.6 7.8 0.00017 23.5 1.1 16 10-25 112-127 (328)
20 PF05295 Luciferase_N: Lucifer 46.5 4.6 0.0001 20.2 -0.5 18 22-40 29-46 (82)
21 PF11411 DNA_ligase_IV: DNA li 41.8 9.9 0.00021 16.3 0.2 11 36-46 8-18 (36)
22 PF08260 Kinin: Insect kinin p 37.9 14 0.00029 10.7 0.2 6 11-16 2-7 (8)
23 PF04380 BMFP: Membrane fusoge 33.7 20 0.00044 17.5 0.6 11 32-42 46-56 (79)
24 KOG0683 Glutamine synthetase [ 28.4 37 0.00081 21.7 1.2 35 5-46 243-277 (380)
25 COG4479 Uncharacterized protei 25.8 18 0.00039 17.8 -0.3 16 22-40 55-70 (74)
26 cd01237 Unc112 Unc-112 pleckst 25.8 18 0.00039 19.0 -0.4 16 9-24 88-103 (106)
27 COG0278 Glutaredoxin-related p 23.7 34 0.00074 18.0 0.4 9 26-34 70-78 (105)
28 KOG3313 Molecular chaperone Pr 21.1 81 0.0018 18.3 1.6 17 8-24 107-123 (187)
29 COG4707 Uncharacterized protei 20.4 81 0.0018 16.5 1.4 12 30-41 15-26 (107)
30 PF07116 DUF1372: Protein of u 20.4 53 0.0011 17.3 0.7 17 25-41 76-92 (104)
No 1
>PTZ00452 actin; Provisional
Probab=99.78 E-value=1.5e-19 Score=109.02 Aligned_cols=50 Identities=68% Similarity=1.258 Sum_probs=47.8
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|.++++|++++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus 326 ~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 326 KIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred eeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 68899999999999999999999999999999999999999999999986
No 2
>PTZ00466 actin-like protein; Provisional
Probab=99.76 E-value=6.3e-19 Score=106.50 Aligned_cols=50 Identities=64% Similarity=1.138 Sum_probs=47.7
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+|+|..+++|++++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus 331 ~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 331 TIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred eEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 58899999999999999999999999999999999999999999999885
No 3
>PTZ00281 actin; Provisional
Probab=99.75 E-value=1e-18 Score=105.21 Aligned_cols=50 Identities=94% Similarity=1.541 Sum_probs=47.8
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|..+++|.+++|+|||++|+++.|++.||||+||+|+|++++++||+
T Consensus 327 ~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 327 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred ceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 58899999999999999999999999999999999999999999999985
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=99.75 E-value=6.5e-19 Score=106.72 Aligned_cols=51 Identities=82% Similarity=1.465 Sum_probs=48.8
Q ss_pred CeeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 1 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 1 ~~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
++++|+++|++.+++|+||||+|+++.|+++||||+||+|.|++++++|||
T Consensus 322 ~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 322 IKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred cceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 368999999999999999999999999999999999999999999999997
No 5
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.73 E-value=4.7e-19 Score=105.93 Aligned_cols=50 Identities=68% Similarity=1.381 Sum_probs=45.5
Q ss_pred eeEEEcCC-CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~-~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|..++ +|.+++|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus 343 ~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 343 KVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp TEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 58899988 999999999999999999999999999999999999999996
No 6
>PTZ00004 actin-2; Provisional
Probab=99.73 E-value=3.6e-18 Score=102.83 Aligned_cols=50 Identities=90% Similarity=1.514 Sum_probs=47.6
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|..+++|++++|+|||++|+++.|++.||||+||+|+|++++.+||+
T Consensus 329 ~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 329 KIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred cEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 57888899999999999999999999999999999999999999999986
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.70 E-value=8.4e-18 Score=102.08 Aligned_cols=48 Identities=46% Similarity=0.871 Sum_probs=45.2
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 49 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~ 49 (51)
+|+|..++++++++|+|||++|+++.|+++||||+||+|+|+++++++
T Consensus 361 ~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 361 DVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred eEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 578888899999999999999999999999999999999999999875
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.69 E-value=1.9e-17 Score=98.85 Aligned_cols=50 Identities=76% Similarity=1.377 Sum_probs=47.4
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|..++++.+++|.|||++|+++.|++.||||+||+|+|++++++||+
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred eeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 57888889999999999999999999999999999999999999999986
No 9
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.60 E-value=2.9e-16 Score=96.93 Aligned_cols=50 Identities=54% Similarity=1.075 Sum_probs=47.1
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
.|.|..+++|.+.+|+|||++|+++.|+++||||+||+|+|+++++++++
T Consensus 395 ~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 395 KVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred ceeeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 57899999999999999999999999999999999999999999988764
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.60 E-value=6.5e-16 Score=92.32 Aligned_cols=47 Identities=83% Similarity=1.427 Sum_probs=43.5
Q ss_pred eEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984 3 IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 49 (51)
Q Consensus 3 v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~ 49 (51)
+++..+++|.+++|+|||++|+++.|++.||||+||+|+|++++++|
T Consensus 325 ~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 325 VKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred EEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 56777789999999999999999999999999999999999999875
No 11
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.55 E-value=7.3e-16 Score=93.83 Aligned_cols=49 Identities=57% Similarity=1.152 Sum_probs=42.9
Q ss_pred eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCC-cceeeec
Q 040984 2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP-SIVHRKC 50 (51)
Q Consensus 2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~-~~~~~~~ 50 (51)
+++|.+.. +|++++|+|||+||++++|+++||+|+||+|.|. ..+.+||
T Consensus 373 rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 373 RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 46777654 7999999999999999999999999999999999 5566666
No 12
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=99.37 E-value=3.5e-13 Score=81.31 Aligned_cols=50 Identities=32% Similarity=0.630 Sum_probs=46.6
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
.++|..|.||...+|.||+.++.++.|...||||+||+|+|++++.++++
T Consensus 350 ~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 350 EVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred eEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 47889999999999999999999999999999999999999999987753
No 13
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=99.17 E-value=4.6e-12 Score=80.09 Aligned_cols=48 Identities=27% Similarity=0.491 Sum_probs=45.2
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeee
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 49 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~ 49 (51)
+|+|+.+.||.++||+||+.+|..++|...++||+||+|+|+.+++..
T Consensus 591 ~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 591 SINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH 638 (645)
T ss_pred ceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence 689999999999999999999999999999999999999999988764
No 14
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.99 E-value=1.6e-10 Score=68.95 Aligned_cols=47 Identities=38% Similarity=0.846 Sum_probs=41.9
Q ss_pred eeEEEcCCCceeeeeehhhhhcc-ccccceeeeeHHHHhhcCCcceee
Q 040984 2 KIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 48 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~-~~~~~~~~vtr~ey~E~G~~~~~~ 48 (51)
+|+|.+||.+...+++||+++|. +.+-+++|+||+||+|.|.+.+.+
T Consensus 338 kiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 338 KIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNK 385 (389)
T ss_pred EEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHh
Confidence 68888999999999999999998 466778999999999999987654
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=98.98 E-value=9.8e-11 Score=71.06 Aligned_cols=47 Identities=36% Similarity=0.632 Sum_probs=42.7
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceee
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 48 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~ 48 (51)
+|+|+...-.++++|.||+++++.++|...+-||++|+|+|+++++.
T Consensus 361 dvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 361 DVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred eeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 46777777789999999999999999999999999999999999875
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=98.80 E-value=8.9e-10 Score=69.66 Aligned_cols=49 Identities=27% Similarity=0.712 Sum_probs=45.2
Q ss_pred eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984 2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 50 (51)
Q Consensus 2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~ 50 (51)
.|.|+.+| ||++-+|+||++++.+....++||++.||+-+|.++++.|+
T Consensus 563 ~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~ 614 (618)
T KOG0797|consen 563 TVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKK 614 (618)
T ss_pred ceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcc
Confidence 47888877 89999999999999999999999999999999999998875
No 17
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=75.74 E-value=1.8 Score=18.70 Aligned_cols=11 Identities=55% Similarity=0.978 Sum_probs=9.5
Q ss_pred eeeeHHHHhhc
Q 040984 31 MWISKGEYDES 41 (51)
Q Consensus 31 ~~vtr~ey~E~ 41 (51)
-|||.+||+|.
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 49999999984
No 18
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=73.13 E-value=1.9 Score=19.20 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=12.1
Q ss_pred cccce-eeeeHHHHhhc
Q 040984 26 STFQQ-MWISKGEYDES 41 (51)
Q Consensus 26 ~~~~~-~~vtr~ey~E~ 41 (51)
..|-. -|||.+||+|.
T Consensus 24 ~~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 24 NKFVEKKLITREQYKVI 40 (45)
T ss_pred HHHhhcCccCHHHHHHH
Confidence 44555 49999999984
No 19
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=54.56 E-value=7.8 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.723 Sum_probs=13.1
Q ss_pred Cceeeeeehhhhhccc
Q 040984 10 ERKYSVWIGGSILASL 25 (51)
Q Consensus 10 ~~~~~aW~G~s~~a~~ 25 (51)
.|.-.+|+||.+|+.+
T Consensus 112 aPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 112 APGGGAWLGGQLFSAM 127 (328)
T ss_pred cCCCcccccchhhhhh
Confidence 4666899999999865
No 20
>PF05295 Luciferase_N: Luciferase/LBP N-terminal domain; InterPro: IPR007959 Proteins in this entry belong to a family of dinoflagellate luciferase and luciferin binding proteins. Luciferase is involved in catalysing the light emitting reaction in bioluminescence and luciferin binding protein (LBP) is known to bind to luciferin (the substrate for luciferase) to stop it reacting with the enzyme and therefore switching off the bioluminescence function. The expression of these two proteins is controlled by a circadian clock at the translational level, with synthesis and degradation occurring on a daily basis []. This entry consists of a presumed N-terminal domain that is conserved between dinoflagellate luciferase and luciferin binding proteins. This domain is not, however, the catalytic part of the protein. It has been suggested that this region may mediate an interaction between LBP and Luciferase or their association with the vacuolar membrane []. More information about these proteins can be found at Protein of the Month: Luciferase [].
Probab=46.54 E-value=4.6 Score=20.18 Aligned_cols=18 Identities=39% Similarity=0.909 Sum_probs=12.8
Q ss_pred hccccccceeeeeHHHHhh
Q 040984 22 LASLSTFQQMWISKGEYDE 40 (51)
Q Consensus 22 ~a~~~~~~~~~vtr~ey~E 40 (51)
+.+.++|.+.| |..|||.
T Consensus 29 lesvsDFAn~W-Ts~eyE~ 46 (82)
T PF05295_consen 29 LESVSDFANYW-TSAEYEK 46 (82)
T ss_pred hhhHHHHHhhh-hHHHHHh
Confidence 34567899999 5578864
No 21
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=41.76 E-value=9.9 Score=16.27 Aligned_cols=11 Identities=45% Similarity=0.531 Sum_probs=7.2
Q ss_pred HHHhhcCCcce
Q 040984 36 GEYDESGPSIV 46 (51)
Q Consensus 36 ~ey~E~G~~~~ 46 (51)
+||+.+|.++.
T Consensus 8 ~eyD~yGDSY~ 18 (36)
T PF11411_consen 8 KEYDCYGDSYT 18 (36)
T ss_dssp HHB-TTS-BSS
T ss_pred HHhcccccccc
Confidence 68999998764
No 22
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=37.89 E-value=14 Score=10.70 Aligned_cols=6 Identities=17% Similarity=0.994 Sum_probs=2.9
Q ss_pred ceeeee
Q 040984 11 RKYSVW 16 (51)
Q Consensus 11 ~~~~aW 16 (51)
|.+.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 444455
No 23
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=33.67 E-value=20 Score=17.53 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=8.9
Q ss_pred eeeHHHHhhcC
Q 040984 32 WISKGEYDESG 42 (51)
Q Consensus 32 ~vtr~ey~E~G 42 (51)
+|||+|++-..
T Consensus 46 lVtREEFd~q~ 56 (79)
T PF04380_consen 46 LVTREEFDAQK 56 (79)
T ss_pred CCcHHHHHHHH
Confidence 79999998653
No 24
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=28.36 E-value=37 Score=21.68 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred EEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcce
Q 040984 5 VVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46 (51)
Q Consensus 5 v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~ 46 (51)
+.-.|.|..+-|.|+.- .....|++++++.|..++
T Consensus 243 asf~pKp~~g~WngaG~-------Htn~ST~~mr~~~g~~~i 277 (380)
T KOG0683|consen 243 ASFDPKPILGDWNGAGC-------HTNFSTKEMREAGGLKII 277 (380)
T ss_pred EEecCCCCCCcccCccc-------ccccchhHHHhccCHHHH
Confidence 34456788899999442 223468999999887654
No 25
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.84 E-value=18 Score=17.81 Aligned_cols=16 Identities=44% Similarity=0.918 Sum_probs=9.3
Q ss_pred hccccccceeeeeHHHHhh
Q 040984 22 LASLSTFQQMWISKGEYDE 40 (51)
Q Consensus 22 ~a~~~~~~~~~vtr~ey~E 40 (51)
+-.+..|++.| ++|.|
T Consensus 55 ~~~m~~FDeiw---e~Yle 70 (74)
T COG4479 55 LFNMSVFDEIW---EEYLE 70 (74)
T ss_pred ccchhhHHHHH---HHHHH
Confidence 33455666666 66655
No 26
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.81 E-value=18 Score=18.98 Aligned_cols=16 Identities=38% Similarity=0.794 Sum_probs=11.4
Q ss_pred CCceeeeeehhhhhcc
Q 040984 9 PERKYSVWIGGSILAS 24 (51)
Q Consensus 9 ~~~~~~aW~G~s~~a~ 24 (51)
.+.+++.|+-|+.+|+
T Consensus 88 sEeqya~Wmaa~rlas 103 (106)
T cd01237 88 NEKQYAKWMAACRLAS 103 (106)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 3456777888887775
No 27
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=34 Score=18.01 Aligned_cols=9 Identities=33% Similarity=0.862 Sum_probs=5.8
Q ss_pred cccceeeee
Q 040984 26 STFQQMWIS 34 (51)
Q Consensus 26 ~~~~~~~vt 34 (51)
|+|.+.||.
T Consensus 70 PT~PQLyi~ 78 (105)
T COG0278 70 PTFPQLYVN 78 (105)
T ss_pred CCCceeeEC
Confidence 667776654
No 28
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=81 Score=18.25 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=11.9
Q ss_pred CCCceeeeeehhhhhcc
Q 040984 8 PPERKYSVWIGGSILAS 24 (51)
Q Consensus 8 ~~~~~~~aW~G~s~~a~ 24 (51)
+|-...+-|.||+++-.
T Consensus 107 ~~~~kV~LWLGAnVMlE 123 (187)
T KOG3313|consen 107 PPTDKVYLWLGANVMLE 123 (187)
T ss_pred CCcCeEEEEecceeEEE
Confidence 33345678999998764
No 29
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.42 E-value=81 Score=16.53 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=9.7
Q ss_pred eeeeeHHHHhhc
Q 040984 30 QMWISKGEYDES 41 (51)
Q Consensus 30 ~~~vtr~ey~E~ 41 (51)
+.-|+|.||+|.
T Consensus 15 ~ilv~k~eyqel 26 (107)
T COG4707 15 KILVDKVEYQEL 26 (107)
T ss_pred eEEeeHHHHHHH
Confidence 456899999985
No 30
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=20.37 E-value=53 Score=17.27 Aligned_cols=17 Identities=12% Similarity=0.548 Sum_probs=13.4
Q ss_pred ccccceeeeeHHHHhhc
Q 040984 25 LSTFQQMWISKGEYDES 41 (51)
Q Consensus 25 ~~~~~~~~vtr~ey~E~ 41 (51)
...+..+-||++.|+..
T Consensus 76 i~~YGkFlVtkeqY~~i 92 (104)
T PF07116_consen 76 IGAYGKFLVTKEQYESI 92 (104)
T ss_pred ecCceEEEEehhhccee
Confidence 35577889999999874
Done!