Query 040984
Match_columns 51
No_of_seqs 129 out of 1028
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 99.8 2.3E-20 8E-25 113.0 0.8 49 2-50 373-421 (427)
2 4fo0_A Actin-related protein 8 99.7 8.3E-20 2.8E-24 112.4 0.0 50 2-51 538-590 (593)
3 3qb0_A Actin-related protein 4 99.7 2E-19 6.7E-24 110.9 -1.4 50 1-50 444-497 (498)
4 1k8k_A ARP3, actin-like protei 99.7 6E-19 2.1E-23 105.3 0.4 49 2-50 364-412 (418)
5 2fxu_A Alpha-actin-1, actin, a 99.7 1.9E-18 6.6E-23 102.3 1.4 50 2-51 326-375 (375)
6 4am6_A Actin-like protein ARP8 99.7 9E-18 3.1E-22 106.1 0.1 51 1-51 599-652 (655)
7 1k8k_B ARP2, actin-like protei 99.6 2.4E-17 8.3E-22 98.3 0.1 47 2-48 341-388 (394)
8 1jce_A ROD shape-determining p 80.2 0.17 5.7E-06 29.2 -1.3 26 4-29 304-330 (344)
9 2jsh_A Appetite-regulating hor 69.3 0.75 2.6E-05 17.8 -0.3 13 32-44 10-22 (26)
10 1dkg_D Molecular chaperone DNA 58.2 1.3 4.3E-05 25.8 -0.9 22 4-25 360-381 (383)
11 3h1q_A Ethanolamine utilizatio 53.1 1.6 5.4E-05 24.1 -1.1 20 4-23 253-272 (272)
12 3qfu_A 78 kDa glucose-regulate 45.9 1.7 5.6E-05 25.3 -1.8 22 3-24 370-391 (394)
13 2zo6_A CYAN-emitting GFP-like 25.2 15 0.00052 21.3 0.0 20 22-43 12-31 (252)
14 2v7y_A Chaperone protein DNAK; 23.7 9.1 0.00031 23.4 -1.2 20 5-24 330-349 (509)
15 3te3_A Polycystic kidney disea 23.7 28 0.00095 14.5 0.7 10 31-40 2-11 (39)
16 3i33_A Heat shock-related 70 k 23.6 8.5 0.00029 22.4 -1.3 21 4-24 379-399 (404)
17 3gon_A Phosphomevalonate kinas 21.4 13 0.00046 20.8 -0.7 35 12-46 290-324 (335)
18 1x93_A Hypothetical protein HP 20.3 54 0.0018 14.4 1.3 12 30-41 5-16 (55)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.3e-20 Score=113.00 Aligned_cols=49 Identities=33% Similarity=0.639 Sum_probs=46.7
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 50 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~ 50 (51)
+|+|.++++|++++|+|||+||+++.|+++||||+||+|+|++++++++
T Consensus 373 ~vkv~~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~ 421 (427)
T 3dwl_A 373 DVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQ 421 (427)
T ss_dssp CCCEECCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCC
T ss_pred eEEEecCCccccceecCceeeccccchhheeEEHHHHhhhChHhheecc
Confidence 5889999999999999999999999999999999999999999999874
No 2
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.75 E-value=8.3e-20 Score=112.39 Aligned_cols=50 Identities=28% Similarity=0.686 Sum_probs=47.0
Q ss_pred eeEEEcCC---CceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~---~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+|+|++++ ||++++|+|||+||+++.|+++||||+||+|+|++++++||.
T Consensus 538 ~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 538 NVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp CCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred eEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 47899887 899999999999999999999999999999999999999984
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-19 Score=110.93 Aligned_cols=50 Identities=42% Similarity=0.945 Sum_probs=46.6
Q ss_pred CeeEEEcC---CCceeeeeehhhhhccccccceeeeeHHHHhhcCC-cceeeec
Q 040984 1 MKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGP-SIVHRKC 50 (51)
Q Consensus 1 ~~v~v~~~---~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~-~~~~~~~ 50 (51)
++|+|.++ ++|.+++|+|||+||+++.|+++||||+||+|+|+ +++++||
T Consensus 444 ~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 444 LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp SCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred CeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 36889987 78999999999999999999999999999999999 8999987
No 4
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.71 E-value=6e-19 Score=105.26 Aligned_cols=49 Identities=39% Similarity=0.745 Sum_probs=46.2
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeec
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 50 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~ 50 (51)
+|+|..+++|.+++|+|||++|+++.|+++||||+||+|+|++++++++
T Consensus 364 ~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~ 412 (418)
T 1k8k_A 364 DVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412 (418)
T ss_dssp CCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred eEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence 4788999999999999999999999999999999999999999999865
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.70 E-value=1.9e-18 Score=102.28 Aligned_cols=50 Identities=90% Similarity=1.528 Sum_probs=44.1
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
+++|..+++|.+++|+||+++++++.|+++||||+||+|+|++++++||+
T Consensus 326 ~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 326 KIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp CCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred eEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence 47888899999999999999999999999999999999999999999985
No 6
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=99.65 E-value=9e-18 Score=106.08 Aligned_cols=51 Identities=25% Similarity=0.741 Sum_probs=47.5
Q ss_pred CeeEEEcCCCc---eeeeeehhhhhccccccceeeeeHHHHhhcCCcceeeecC
Q 040984 1 MKIKVVAPPER---KYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 51 (51)
Q Consensus 1 ~~v~v~~~~~~---~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~~~~~~ 51 (51)
++|+|+++|++ ++++|+|||+||+++.|+++||||+||+|.|++++++||+
T Consensus 599 ~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 599 FPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp CCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred eeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence 46899999865 9999999999999999999999999999999999999974
No 7
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.63 E-value=2.4e-17 Score=98.34 Aligned_cols=47 Identities=34% Similarity=0.809 Sum_probs=1.3
Q ss_pred eeEEEcCCCceeeeeehhhhhccccccc-eeeeeHHHHhhcCCcceee
Q 040984 2 KIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPSIVHR 48 (51)
Q Consensus 2 ~v~v~~~~~~~~~aW~G~s~~a~~~~~~-~~~vtr~ey~E~G~~~~~~ 48 (51)
+|+|..+++|.+++|+|||++++++.|+ ++||||+||+|+|++++++
T Consensus 341 ~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 341 KIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp CC----------------------------------------------
T ss_pred EEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 5788888999999999999999999999 9999999999999999876
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=80.25 E-value=0.17 Score=29.18 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=20.1
Q ss_pred EEEcCCCceeeeeehhhhhccc-cccc
Q 040984 4 KVVAPPERKYSVWIGGSILASL-STFQ 29 (51)
Q Consensus 4 ~v~~~~~~~~~aW~G~s~~a~~-~~~~ 29 (51)
+|..+++|.+++|.|+++++.. +.|+
T Consensus 304 ~v~~~~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 304 SVIRSEEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp CEEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred CccccCChHHHHHHHHHHHHhChHHHH
Confidence 4555678999999999999974 4453
No 9
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=69.27 E-value=0.75 Score=17.82 Aligned_cols=13 Identities=23% Similarity=0.504 Sum_probs=10.3
Q ss_pred eeeHHHHhhcCCc
Q 040984 32 WISKGEYDESGPS 44 (51)
Q Consensus 32 ~vtr~ey~E~G~~ 44 (51)
-+|-++|+|+|..
T Consensus 10 ~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 10 KLSGAQYQQHGRA 22 (26)
T ss_dssp GGHHHHCSCSSSC
T ss_pred EecHHHHHHHhHH
Confidence 3678999999964
No 10
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=58.23 E-value=1.3 Score=25.80 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=17.5
Q ss_pred EEEcCCCceeeeeehhhhhccc
Q 040984 4 KVVAPPERKYSVWIGGSILASL 25 (51)
Q Consensus 4 ~v~~~~~~~~~aW~G~s~~a~~ 25 (51)
.|..+.+|.+++|+|+++++..
T Consensus 360 ~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 360 EPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp CCBCSSCTTTHHHHHHHHHTTT
T ss_pred CCCCCcChHHHHHHHHHHHHHh
Confidence 3455678999999999998863
No 11
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=53.08 E-value=1.6 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.0
Q ss_pred EEEcCCCceeeeeehhhhhc
Q 040984 4 KVVAPPERKYSVWIGGSILA 23 (51)
Q Consensus 4 ~v~~~~~~~~~aW~G~s~~a 23 (51)
.|..+++|.++.++|+++++
T Consensus 253 ~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 253 EVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp CCBCCSSGGGHHHHHHHTTC
T ss_pred CccccCChHHHHHHHHHhcC
Confidence 45567789999999999864
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=45.89 E-value=1.7 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=17.6
Q ss_pred eEEEcCCCceeeeeehhhhhcc
Q 040984 3 IKVVAPPERKYSVWIGGSILAS 24 (51)
Q Consensus 3 v~v~~~~~~~~~aW~G~s~~a~ 24 (51)
.+|..+.+|..+++.|+++++.
T Consensus 370 ~~v~~~~~p~~ava~Gaa~~a~ 391 (394)
T 3qfu_A 370 KKASKGINPDEAVAYGAAVQAG 391 (394)
T ss_dssp CCCBCCSCTTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHH
Confidence 3455667899999999999875
No 13
>2zo6_A CYAN-emitting GFP-like protein, kusabira-CYAN (KC; luminescent protein, structural genomics, structural genomics/proteomics initiative, RSGI; HET: GYS; 1.40A {Fungia concinna} PDB: 2zo7_A*
Probab=25.18 E-value=15 Score=21.32 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=0.0
Q ss_pred hccccccceeeeeHHHHhhcCC
Q 040984 22 LASLSTFQQMWISKGEYDESGP 43 (51)
Q Consensus 22 ~a~~~~~~~~~vtr~ey~E~G~ 43 (51)
+|++..++++ .|.+|++.++
T Consensus 12 ~~~~~~~~~m--~~~~~~~~~~ 31 (252)
T 2zo6_A 12 MASMTGGQQM--GRDLYDDDDK 31 (252)
T ss_dssp ----------------------
T ss_pred hhhccchhhh--ChhhccCCCC
Confidence 4566778887 8999999886
No 14
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=23.68 E-value=9.1 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=16.2
Q ss_pred EEcCCCceeeeeehhhhhcc
Q 040984 5 VVAPPERKYSVWIGGSILAS 24 (51)
Q Consensus 5 v~~~~~~~~~aW~G~s~~a~ 24 (51)
+..+.+|..++|+||++++.
T Consensus 330 ~~~~~~p~~aVa~Gaa~~a~ 349 (509)
T 2v7y_A 330 PHKGVNPDEVVAIGAAIQGG 349 (509)
T ss_dssp CBCCSCTTTHHHHHHHHHHH
T ss_pred cCcCCCchhhhHhhHHHHHH
Confidence 44567889999999999875
No 15
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=23.66 E-value=28 Score=14.49 Aligned_cols=10 Identities=30% Similarity=0.601 Sum_probs=7.5
Q ss_pred eeeeHHHHhh
Q 040984 31 MWISKGEYDE 40 (51)
Q Consensus 31 ~~vtr~ey~E 40 (51)
.||+.+|+.-
T Consensus 2 ~~Vs~eeF~~ 11 (39)
T 3te3_A 2 GWVSGEEFYM 11 (39)
T ss_dssp CCCCHHHHHH
T ss_pred CCcCHHHHHH
Confidence 4788888864
No 16
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=23.64 E-value=8.5 Score=22.44 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.1
Q ss_pred EEEcCCCceeeeeehhhhhcc
Q 040984 4 KVVAPPERKYSVWIGGSILAS 24 (51)
Q Consensus 4 ~v~~~~~~~~~aW~G~s~~a~ 24 (51)
.|..+.+|..+++.|+++++.
T Consensus 379 ~v~~~~~p~~ava~Gaa~~a~ 399 (404)
T 3i33_A 379 ELNKSINPDEAVAYGAAVQAA 399 (404)
T ss_dssp CCBCSSCTTTHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHH
Confidence 455667899999999999875
No 17
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=21.39 E-value=13 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=21.6
Q ss_pred eeeeeehhhhhccccccceeeeeHHHHhhcCCcce
Q 040984 12 KYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 46 (51)
Q Consensus 12 ~~~aW~G~s~~a~~~~~~~~~vtr~ey~E~G~~~~ 46 (51)
...+|-||++++-.++-...---++.|++.|-..+
T Consensus 290 ltGAG~Ggc~ial~~~~~~~~~i~~~~~~~Gi~~~ 324 (335)
T 3gon_A 290 SSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELL 324 (335)
T ss_dssp ECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEEE
T ss_pred EccccchheEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 44578899988765432222123567888887655
No 18
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=20.30 E-value=54 Score=14.40 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=8.5
Q ss_pred eeeeeHHHHhhc
Q 040984 30 QMWISKGEYDES 41 (51)
Q Consensus 30 ~~~vtr~ey~E~ 41 (51)
++.++++||+-.
T Consensus 5 s~Y~SkEey~~L 16 (55)
T 1x93_A 5 SLYFSDEQYQKL 16 (55)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEecHHHHHHH
Confidence 456788988654
Done!