BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040986
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
Length = 529
Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/506 (36%), Positives = 273/506 (53%), Gaps = 14/506 (2%)
Query: 17 TNIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHM 74
N+++RP L + DP GNFAPV E P V G++P + G+Y RNG NP
Sbjct: 29 ANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFD 88
Query: 75 PRGPLHFFEGDGMLHSMQLSKGRA-IYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVD 133
P H F+GDGM+H++++ G A Y R+ +T + + ER G +FP +G
Sbjct: 89 PVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSG 148
Query: 134 MVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIINCTREGDIETLG 193
+ + AR G V+ G G+AN E DLPY + +GD+ET+G
Sbjct: 149 IARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVG 208
Query: 194 RWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINR 253
R+DFD +L +M AHPK D T E A + P+L + F +G K DV I + +
Sbjct: 209 RYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI-PLEQ 267
Query: 254 PTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMK 313
PT IHDFAIT+ + + Q+ V ML G P V D K R G++ K+A +EM
Sbjct: 268 PTMIHDFAITENLVVVPDHQV-VFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMA 326
Query: 314 WFNVPGFNAMHVFNAWEN-GEDEVVLIATNATSIENLFLKVD-MVHISLEKVRINLRTGN 371
W +VP H++NAWE+ EVV+I + T +++F + D + L ++R++ RTG
Sbjct: 327 WVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGR 386
Query: 372 VSRNIL----SARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRR 427
+R + NLE+G +N + +G++ RY ++ V + PK+ G K+DL E+++
Sbjct: 387 STRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG-ELTKF 445
Query: 428 FYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAA 487
YG G FGGEP FVP + EDDG+V+T++HDE G S+ LV++A L+ A
Sbjct: 446 EYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--AT 503
Query: 488 VKLPRRVPYGFHGLFVHEENHSNQKS 513
V+LP RVP+GFHG F+ + Q +
Sbjct: 504 VQLPSRVPFGFHGTFITGQELEAQAA 529
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|C Chain C, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|D Chain D, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIX|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
pdb|2BIX|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
Length = 490
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 206/480 (42%), Gaps = 55/480 (11%)
Query: 52 VDGKLPDSLTGMYIRNGPNPQHMPRGPL-HFFEGDGMLHSMQL-SKGRAIYTSRYVKTYK 109
V+G +P L G RNGP + PL H F+GDGM+ + + GR + S++V+T
Sbjct: 38 VEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQG 97
Query: 110 YKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXX 169
Y E+ AG I+ VF Q + + + LK +ANT
Sbjct: 98 YVEEQKAGKMIYRGVFGS--------QPAGGWLKTIF-DLRLKN---IANTNITYWGDRL 145
Query: 170 XXXGESDLPYIINCTREGDIETLGRWDFDEELFAS--MTAHPKTDMTTKETF-------- 219
E P+ + + ++ T+G D L ++AHP+ D + TF
Sbjct: 146 LALWEGGQPHRLEPS---NLATIGLDDLGGILAEGQPLSAHPRIDPAS--TFDGGQPCYV 200
Query: 220 AFKFSPFFSPHLTFSRFDANG--VKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVS 277
F S LT D G ++QK FIHDFAIT +AIF + + ++
Sbjct: 201 TFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGF---AFIHDFAITPHYAIFLQNNVTLN 257
Query: 278 AANVMLG---KGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWE-NGE 333
+ G G F P+K +I ++ + E+K V H NA+E NG+
Sbjct: 258 GLPYLFGLRGAGECVQFHPDKPAQIILVPR---DGGEIKRIPVQAGFVFHHANAFEENGK 314
Query: 334 ---DEVVLIATNATSIENLFLKVDMVHI---SLEKVRINLRTGNVSRNILSARNLELGSI 387
D + + + F + ++ L + I+ V + ++ +R E +
Sbjct: 315 IILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVV 374
Query: 388 NSSYIGKKNRYVFVGVGKEI---PKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRN 444
+ +G+ RYV++G +Q ++K+DLE E R F P F GEP+FVPR
Sbjct: 375 HPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLESGTETLRSF-APHGFAGEPIFVPRP 433
Query: 445 GDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVH 504
G EDDG+++ I+ + S+ +++DA+ +A +KL +PY HG +
Sbjct: 434 G----GVAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWAQ 489
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution
pdb|3FSN|B Chain B, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution
pdb|3KVC|A Chain A, Crystal Structure Of Bovine Rpe65 At 1.9 Angstrom
Resolution
pdb|3KVC|B Chain B, Crystal Structure Of Bovine Rpe65 At 1.9 Angstrom
Resolution
pdb|4F2Z|A Chain A, Crystal Structure Of Rpe65 In A Lipid Environment
pdb|4F2Z|E Chain E, Crystal Structure Of Rpe65 In A Lipid Environment
pdb|4F30|A Chain A, Structure Of Rpe65: P6522 Crystal Form Grown In Ammonium
Phosphate Solution
pdb|4F3A|A Chain A, Structure Of Rpe65: P6522 Crystal Form, Iridium Derivative
pdb|4F3D|A Chain A, Structure Of Rpe65: P65 Crystal Form Grown In
Fos-Choline-10
pdb|4F3D|B Chain B, Structure Of Rpe65: P65 Crystal Form Grown In
Fos-Choline-10
Length = 533
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 122/547 (22%), Positives = 205/547 (37%), Gaps = 114/547 (20%)
Query: 38 FAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPL-HFFEGDGMLHSMQLSKG 96
F V+EL V G++P LTG +R GP + P H F+G +LH +G
Sbjct: 16 FETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEG 75
Query: 97 RAIYTSRYVKTYKYK--------LERDAGGQIFP----NVFSGFYGLVDMVQCVASTARV 144
Y R+++T Y + + G FP N+FS F+ V+ V A V
Sbjct: 76 HVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVE-VTDNALV 134
Query: 145 LMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIINCTREGDIETLGRWDFDEELFAS 204
+ V + + T I +ET+ + D + +
Sbjct: 135 NIYPVG-EDYYACTETN------------------FITKVNPETLETIKQVDLCNYVSVN 175
Query: 205 -MTAHPK-----TDMTTKETFAFKFSPFFS----PHLTFSRFDANGVKQKDV--PILSIN 252
TAHP T F FS ++ P L + D + V P
Sbjct: 176 GATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRF 235
Query: 253 RPTFIHDFAITKRFAIFSETQLAVS-----AANVMLGKGMPTVFDPEKVPRIGIILKYAT 307
+P+++H F +T + +F ET + ++ ++ + G F+ + +G+ L A
Sbjct: 236 KPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNET--MGVWLHIAD 293
Query: 308 SDAEMKWFN----VPGFNAMHVFNAWENGEDEVV-LIATNATSIENLFLKVDMVHISLEK 362
+ K+ N FN H N +E+ E +V L +L + + + E+
Sbjct: 294 KKRK-KYINNKYRTSPFNLFHHINTYEDHEFLIVDLCCWKGFEFVYNYLYLANLRENWEE 352
Query: 363 VRINLRTG---NVSRNIL--------SARNL----------------------------- 382
V+ N R V R +L + +NL
Sbjct: 353 VKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGP 412
Query: 383 ----ELGSIN-SSYIGKKNRYVF-VGVGKEIPKMQGVVKIDLE-KEIEVSRRFYGPGCFG 435
E IN Y GK Y + +G+ +P + K++++ KE V + P +
Sbjct: 413 RQAFEFPQINYQKYGGKPYTYAYGLGLNHFVPDR--LCKLNVKTKETWVWQE---PDSYP 467
Query: 436 GEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVP 495
EP+FV H DA +EDDG V++ + G+ ++ + +L VA ++ +P
Sbjct: 468 SEPIFV----SHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIP 523
Query: 496 YGFHGLF 502
FHGLF
Sbjct: 524 VTFHGLF 530
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With
Acetyl-Yvad- Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With
Acetyl-Yvad- Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 10 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 64
Query: 67 NGPN 70
NG +
Sbjct: 65 NGTD 68
>pdb|4DOU|A Chain A, Crystal Structure Of A Single-Chain Trimer Of Human
Adiponectin Globular Domain
Length = 442
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 407 IPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDD--GFVVTYIHD 464
+ + G V + LE +V + YG G RNG + D ++ GF++ HD
Sbjct: 108 VDQASGSVLLHLEVGDQVWLQVYGEG---------ERNGLYADNDNDSTFTGFLL--YHD 156
Query: 465 ENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENH 508
N GE ++ A S L+ V +P +P F +F +++NH
Sbjct: 157 TNPGEGAYVYRSAFSVGLE--TYVTIP-NMPIRFTKIFYNQQNH 197
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 407 IPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDD--GFVVTYIHD 464
+ + G V + LE +V + YG G RNG + D ++ GF++ HD
Sbjct: 249 VDQASGSVLLHLEVGDQVWLQVYGEG---------ERNGLYADNDNDSTFTGFLL--YHD 297
Query: 465 ENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENH 508
N GE ++ A S L+ V +P +P F +F +++NH
Sbjct: 298 TNPGEGAYVYRSAFSVGLE--TYVTIP-NMPIRFTKIFYNQQNH 338
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 35 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 89
Query: 67 NGPN 70
NG +
Sbjct: 90 NGTD 93
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 33 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 87
Query: 67 NGPN 70
NG +
Sbjct: 88 NGTD 91
>pdb|2WZP|P Chain P, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|Q Chain Q, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 326
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 186 EGDIETLGRWDFDEELFASM-TAHPK 210
E DI+ L RWD EE+F+ M +PK
Sbjct: 209 ESDIDRLSRWDIKEEIFSFMGILYPK 234
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 35 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 89
Query: 67 NGPN 70
NG +
Sbjct: 90 NGTD 93
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 33 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 87
Query: 67 NGPN 70
NG +
Sbjct: 88 NGTD 91
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 13 PSLFT----NIIDRPLHPSVD--PKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR 66
PSLF+ N+ R + + D P + + NF ++LG +C +++ K D +TGM +R
Sbjct: 10 PSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNF---EKLG--KCIIINNKNFDKVTGMGVR 64
Query: 67 NGPN 70
NG +
Sbjct: 65 NGTD 68
>pdb|2X54|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 298
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 186 EGDIETLGRWDFDEELFASM-TAHPK 210
E DI+ L RWD EE+F+ M +PK
Sbjct: 181 ESDIDRLSRWDIKEEIFSFMGILYPK 206
>pdb|2X53|S Chain S, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|T Chain T, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|U Chain U, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|V Chain V, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|W Chain W, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|X Chain X, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 298
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 186 EGDIETLGRWDFDEELFASM-TAHPK 210
E DI+ L RWD EE+F+ M +PK
Sbjct: 181 ESDIDRLSRWDIKEEIFSFMGILYPK 206
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 450 AADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRV 494
A D DDGF +H E E + L A LD++ +L RRV
Sbjct: 202 AHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLPELDRRV 246
>pdb|3T95|A Chain A, Crystal Structure Of Lsrb From Yersinia Pestis Complexed
With Autoinducer-2
Length = 335
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 241 VKQKDVPILSINRPTFIHDF---AITKRFAIF---SETQLAVSAANVMLGKGMPTVFDPE 294
+K+ +V I+ + P + + K F ++ ++ +++V AN ML KG V D
Sbjct: 230 LKRANVAIVGFSTPNVMRPYVERGTVKEFGLWDVVNQGKISVYVANEMLKKGDLNVGDKI 289
Query: 295 KVPRIGII 302
+P IG++
Sbjct: 290 DIPNIGVV 297
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 260 FAITKRFAIFSETQLAVSAANVMLGKGMPTV--FDPEKVPRIGIILKYATSDAEMKWFNV 317
F IT+ + F T + + KG+ + FDPEKV + LKY + + F +
Sbjct: 226 FPITRVYLGFMTTYPSGMWSYTFASKGIDPIKDFDPEKVRKFNKELKYYNEEVHVASFAL 285
Query: 318 PGF 320
P F
Sbjct: 286 PNF 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,011,578
Number of Sequences: 62578
Number of extensions: 722897
Number of successful extensions: 1124
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 20
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)