Query 040986
Match_columns 514
No_of_seqs 131 out of 1058
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 2E-126 5E-131 1031.5 51.4 483 21-511 102-589 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 3E-124 6E-129 1013.1 50.4 486 23-514 41-545 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 1E-119 2E-124 920.2 36.6 453 29-506 17-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2E-112 4E-117 919.0 41.3 457 35-505 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 4E-106 1E-110 882.2 45.8 453 35-505 61-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 6E-63 1.3E-67 528.3 29.4 481 21-512 95-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 4.1E-33 8.8E-38 299.0 28.5 343 50-403 37-414 (582)
8 PF06433 Me-amine-dh_H: Methyl 69.3 1.5E+02 0.0033 30.9 19.4 164 289-493 110-290 (342)
9 PF02239 Cytochrom_D1: Cytochr 60.1 36 0.00079 35.8 8.2 75 393-491 45-119 (369)
10 PF10282 Lactonase: Lactonase, 36.2 4.9E+02 0.011 26.7 23.2 99 165-271 47-162 (345)
11 COG2706 3-carboxymuconate cycl 30.0 6.6E+02 0.014 26.3 27.3 220 166-435 51-293 (346)
12 PF02239 Cytochrom_D1: Cytochr 29.4 99 0.0022 32.5 5.6 88 383-492 272-359 (369)
13 PF13360 PQQ_2: PQQ-like domai 24.3 3.5E+02 0.0076 25.3 8.1 65 411-493 3-67 (238)
14 KOG0303 Actin-binding protein 21.3 2.4E+02 0.0052 30.0 6.3 64 157-240 230-297 (472)
15 PF06977 SdiA-regulated: SdiA- 20.7 2.8E+02 0.0061 27.5 6.6 33 211-248 29-61 (248)
16 PF14583 Pectate_lyase22: Olig 20.5 6.1E+02 0.013 27.0 9.2 84 327-433 41-124 (386)
17 KOG0303 Actin-binding protein 20.2 7.3E+02 0.016 26.6 9.4 44 286-332 265-309 (472)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=2.2e-126 Score=1031.46 Aligned_cols=483 Identities=39% Similarity=0.748 Sum_probs=436.5
Q ss_pred cCCCCCCCCCCCcccCCCccccccCCCCCCeeeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCeEEE
Q 040986 21 DRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIY 100 (514)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~p~~e~~~~~~~~v~G~iP~~L~Gtl~RnGP~~~~~~~~~~H~FDGdGmv~~~~f~~G~v~y 100 (514)
..+++.+.+|+++++|+|+|+.||.+..+++|+|+||+||+|||||||||+++.+.+.+||||||||||+|+|+||+|+|
T Consensus 102 ~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y 181 (590)
T PLN02258 102 QHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASY 181 (590)
T ss_pred cCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEE
Confidence 35678889999999999999999998889999999999999999999999988777789999999999999999999999
Q ss_pred EEEeecchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeE
Q 040986 101 TSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYI 180 (514)
Q Consensus 101 ~~R~vrT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~ 180 (514)
+||||||++|++|+++||.+|++.+++..+..++.|..+...+...+..+..+.+|+|||||++|+||||||||+|.||+
T Consensus 182 ~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~ 261 (590)
T PLN02258 182 ACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQ 261 (590)
T ss_pred EeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceE
Confidence 99999999999999999999997677766555666665555554444444444579999999999999999999999999
Q ss_pred EecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcceeeee
Q 040986 181 INCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDF 260 (514)
Q Consensus 181 ld~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf 260 (514)
||++++.||||+|.+||+|+|...||||||+||.||||++|+|+....|+++|+++|++|++.+.+++ +++.++|||||
T Consensus 262 l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i-~lp~p~~~HDF 340 (590)
T PLN02258 262 VRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEI-PLDQPTMMHDF 340 (590)
T ss_pred ecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEe-eCCCCccccce
Confidence 99876669999999999999988899999999999999999999766799999999999999998888 99999999999
Q ss_pred eecCCEEEEEeCccccchhHHHhCCCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeC-CCeEEEE
Q 040986 261 AITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENG-EDEVVLI 339 (514)
Q Consensus 261 aiTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~-~g~Ivvd 339 (514)
+|||||+||+++|+.+|+.+++ .+++++.|+|++++||+||||++++.++++||++|+||+||++||||++ +++||+|
T Consensus 341 aiTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd 419 (590)
T PLN02258 341 AITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVI 419 (590)
T ss_pred eccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEE
Confidence 9999999999999999999987 5568899999999999999999765568999999999999999999973 4689999
Q ss_pred EEecCCchhhhhhc-ccccceEEEEEEeCCCCceEEEeecc---CCccccccCCCCCCCCCceEEEeecccCCCCCeEEE
Q 040986 340 ATNATSIENLFLKV-DMVHISLEKVRINLRTGNVSRNILSA---RNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVK 415 (514)
Q Consensus 340 ~~~~~~~~~~~~~~-~~~~~~l~R~~idl~tg~v~~~~l~~---~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k 415 (514)
+|++.+.+..+... +..+++|+|||||+++|+++++.+.+ .++|||+||++|.||+|||+|+++.+++..+++|+|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK 499 (590)
T PLN02258 420 GSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAK 499 (590)
T ss_pred EecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEE
Confidence 99998766444332 35678999999999999998888765 799999999999999999999988777778999999
Q ss_pred EeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcCCcCC
Q 040986 416 IDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVP 495 (514)
Q Consensus 416 ~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP~~vP 495 (514)
+|+++|+ ++.||+|+++|++||+||||++++ .+|||||||++|+|.++++|+|+||||++| .+|||++||++||
T Consensus 500 ~Dl~tg~-~~~~~~g~g~~~gEPvFVPr~~~~---~~EDDGylls~V~d~~~~~SeL~IlDA~~l--~~VArv~LP~rVP 573 (590)
T PLN02258 500 VDLSTGE-VKKYIYGEGRYGGEPFFVPRGSGS---EAEDDGYILAFVHDEEKGKSELQVVNAVNL--ELEATVKLPSRVP 573 (590)
T ss_pred EECCCCc-EEEEECCCCccccCCEeccCCCCC---cccCCcEEEEEEEECCCCceEEEEEeCCCC--cccEEEECCCCCC
Confidence 9999998 889999999999999999999752 359999999999999999999999999998 4799999999999
Q ss_pred CCcCccccCCcccccc
Q 040986 496 YGFHGLFVHEENHSNQ 511 (514)
Q Consensus 496 ~GfHG~w~~~~~~~~~ 511 (514)
+||||+|+++++|..|
T Consensus 574 ~GFHG~wv~~~~l~~q 589 (590)
T PLN02258 574 YGFHGTFISAEDLLKQ 589 (590)
T ss_pred CcccccccCHHHHhhc
Confidence 9999999999999877
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=2.6e-124 Score=1013.09 Aligned_cols=486 Identities=39% Similarity=0.682 Sum_probs=426.7
Q ss_pred CCCCCCCCCCcccCCCccccccC-CCCCCeeeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCeEEEE
Q 040986 23 PLHPSVDPKHVFTGNFAPVDELG-PTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYT 101 (514)
Q Consensus 23 ~~~~~~~~~~~l~g~~~p~~e~~-~~~~~~v~G~iP~~L~Gtl~RnGP~~~~~~~~~~H~FDGdGmv~~~~f~~G~v~y~ 101 (514)
-++.+++|+++++|+|+|+.+|. +..++.|+|+||+||+|||||||||+++++...+||||||||||+|+|++|+|+|+
T Consensus 41 ~~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~~~~~H~FDGDGMlha~~f~~G~a~y~ 120 (545)
T PLN02491 41 LMHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGMRIKDGKATYV 120 (545)
T ss_pred hccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCCCCCCccccCCccEEEEEEcCCcEEEE
Confidence 36788999999999999996554 47778999999999999999999999888777899999999999999999999999
Q ss_pred EEeecchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeEE
Q 040986 102 SRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYII 181 (514)
Q Consensus 102 ~R~vrT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~l 181 (514)
||||||++|++|+++|+.+|+. ++..++..+..+......+...+..+....+|+|||||++|+||||||||+|.||++
T Consensus 121 ~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l 199 (545)
T PLN02491 121 SRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVV 199 (545)
T ss_pred eeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEe
Confidence 9999999999999999999987 666665544433333222222122222223689999999999999999999999999
Q ss_pred ecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcceeeeee
Q 040986 182 NCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFA 261 (514)
Q Consensus 182 d~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdfa 261 (514)
++.||+||||+|.+||+|+|..+||||||+||.||||++|+|+.. +++++|+++|++|++.+.+++ +++.++|||||+
T Consensus 200 ~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~-~p~~~y~~~~~~G~~~~~v~i-~l~~~~~~HDFa 277 (545)
T PLN02491 200 KVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHE-PPYITYRVISKDGAMHDPVPI-TISEPIMMHDFA 277 (545)
T ss_pred cCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCC-CCcEEEEEECCCCcCcceeEe-ecCCCceeeeeE
Confidence 986788999999999999998889999999999999999999884 489999999999999888887 999999999999
Q ss_pred ecCCEEEEEeCccccchhHHHhCCCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCCeEEEEEE
Q 040986 262 ITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIAT 341 (514)
Q Consensus 262 iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g~Ivvd~~ 341 (514)
|||||+||+++|+.+++.++++++..++.|+|++++||+||||++++.+.++||++|+||+||++||||+ +|+||+|+|
T Consensus 278 iTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee-~~~Ivvd~~ 356 (545)
T PLN02491 278 ITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEE-EDEVVLITC 356 (545)
T ss_pred ecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCcccc-CCeEEEEEe
Confidence 9999999999999999999987777889999999999999999876556799999999999999999998 679999999
Q ss_pred ecCCchh-----hh-hhcccccceEEEEEEeCCCCceEEEeeccCCccccccCCCCCCCCCceEEEeecccCCCCCeEEE
Q 040986 342 NATSIEN-----LF-LKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVK 415 (514)
Q Consensus 342 ~~~~~~~-----~~-~~~~~~~~~l~R~~idl~tg~v~~~~l~~~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k 415 (514)
++++... .+ +.++...++|+|||||+++|+++++.|++.++|||+||+++.||+|||+|+++.++...+++|+|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K 436 (545)
T PLN02491 357 RLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIK 436 (545)
T ss_pred ccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEE
Confidence 9987531 11 11233568999999999999999999999999999999999999999999988776667899999
Q ss_pred EeCCC----Ce--------EEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCc
Q 040986 416 IDLEK----EI--------EVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLD 483 (514)
Q Consensus 416 ~D~~~----g~--------~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~g 483 (514)
+|+++ |+ .++.||+|+++|+|||+||||+++. +.+|||||||++|+|.++++|+|+||||++|+++
T Consensus 437 ~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~--~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~ 514 (545)
T PLN02491 437 FDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGT--TSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSAD 514 (545)
T ss_pred EEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCC--CcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCC
Confidence 99985 43 1347999999999999999997541 1489999999999999999999999999999999
Q ss_pred eeEEEEcCCcCCCCcCccccCCccccccccC
Q 040986 484 IVAAVKLPRRVPYGFHGLFVHEENHSNQKSL 514 (514)
Q Consensus 484 pVAr~~LP~~vP~GfHG~w~~~~~~~~~~~~ 514 (514)
||||++||+|||+||||+|+++++|.+|..+
T Consensus 515 pVA~v~LP~rVP~GfHG~fv~~~~l~~~~~~ 545 (545)
T PLN02491 515 PVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545 (545)
T ss_pred eeEEEECCCCCCCCccccCcCHHHHHHhhcC
Confidence 9999999999999999999999999988654
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.9e-120 Score=920.24 Aligned_cols=453 Identities=33% Similarity=0.558 Sum_probs=398.7
Q ss_pred CCCCcccCCCccccccCCCCCCe-eeecCCCCCceEEEeecCCCCCCC-CCCCccccCCCcEEEEEEecC-eEEEEEEee
Q 040986 29 DPKHVFTGNFAPVDELGPTECPV-VDGKLPDSLTGMYIRNGPNPQHMP-RGPLHFFEGDGMLHSMQLSKG-RAIYTSRYV 105 (514)
Q Consensus 29 ~~~~~l~g~~~p~~e~~~~~~~~-v~G~iP~~L~Gtl~RnGP~~~~~~-~~~~H~FDGdGmv~~~~f~~G-~v~y~~R~v 105 (514)
..+++..|+|+|+++|.+...+. |+|+||++|+|||||||||++..+ ...+||||||||||+|.|.|| +|+||||||
T Consensus 17 ~~~~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfV 96 (490)
T COG3670 17 SSNPYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFV 96 (490)
T ss_pred cCchhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEE
Confidence 33577889999998777775564 999999999999999999998854 568999999999999999995 999999999
Q ss_pred cchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeEEecCC
Q 040986 106 KTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTR 185 (514)
Q Consensus 106 rT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~ld~~~ 185 (514)
||.+|.+|++||++||++++.+..... +.. .. + ..-+|.|||||++|+++|+||||+|.||+|||
T Consensus 97 rT~g~~ae~~Ag~~l~~g~~~~~p~~~---~~~--------~~-~-~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp-- 161 (490)
T COG3670 97 RTQGYLAENEAGKPLWGGLGETQPPGV---RPH--------SR-T-GDLKNAANTSVIMHGDELLALWEGGSPYRLDP-- 161 (490)
T ss_pred eeceeehhhhcCcceeccccccCCCCc---CcC--------cc-c-cccccCCccceEeehhHHHHHHhcCCccccCh--
Confidence 999999999999999999655432210 100 00 0 11268999999999999999999999999986
Q ss_pred CCCcceeeeccCCc-cccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcceeeeeeecC
Q 040986 186 EGDIETLGRWDFDE-ELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITK 264 (514)
Q Consensus 186 ~~TLeT~g~~~~~~-~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdfaiTe 264 (514)
.||+|+|..+|+| .+..+||||||+||.||||+||+|+... ++++|+++|++|++++.+.+ ++|.+.|||||++|+
T Consensus 162 -~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~-~~l~~~~v~~~G~l~r~~~i-~lpg~~~~HDFa~T~ 238 (490)
T COG3670 162 -DTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFAL-PYLTYYVVDADGELRRTVDI-PLPGPPMMHDFAITE 238 (490)
T ss_pred -hHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCC-CeeEEEEECCCCcEEEeeee-ecCCCccceeeeecC
Confidence 4999999999999 4456799999999999999999999866 59999999999999998888 999999999999999
Q ss_pred CEEEEEeCccccch-hHHHhC--CCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCCeEEEEEE
Q 040986 265 RFAIFSETQLAVSA-ANVMLG--KGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIAT 341 (514)
Q Consensus 265 ny~V~~~~P~~~~~-~~~l~~--~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g~Ivvd~~ 341 (514)
||+||++.|+.+|. .+++.. ...++.|+|+.|+||+||||.+ + ++|||||+++||+||+.||||+.|+.|.+|.|
T Consensus 239 ~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~ 316 (490)
T COG3670 239 NYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFL 316 (490)
T ss_pred ceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCCcEEEEEE
Confidence 99999999999995 444433 3678999999999999999986 3 68999999999999999999998889999999
Q ss_pred ecCCchhhhhhc---------ccccceEEEEEEeCCCCceEEEeeccCCccccccCCCCCCCCCceEEEeeccc-CCC--
Q 040986 342 NATSIENLFLKV---------DMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKE-IPK-- 409 (514)
Q Consensus 342 ~~~~~~~~~~~~---------~~~~~~l~R~~idl~tg~v~~~~l~~~~~EfP~In~~~~gr~yry~Y~~~~~~-~~~-- 409 (514)
++++.....+.. ....++|+||+|||+||++.++.+.+++||||+||+++.|++|||+|++...+ ...
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~ 396 (490)
T COG3670 317 RYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQ 396 (490)
T ss_pred eecccccccccccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchh
Confidence 999864322211 12368999999999999999999999999999999999999999999997664 233
Q ss_pred -CCeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEE
Q 040986 410 -MQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAV 488 (514)
Q Consensus 410 -~~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~ 488 (514)
++.|+|+|++||+ .+.+.+++++|++||+|||||++ .+|||||||++|||.+.++|+|+||||++++++||||+
T Consensus 397 g~~~l~k~D~~tg~-~~~~~~g~~~y~~E~vfvPrpg~----~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l 471 (490)
T COG3670 397 GLQTLAKHDLETGT-SQVYSFGPRGYGSEPVFVPRPGS----SAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARL 471 (490)
T ss_pred hcceeEEEeccCCc-EEEEecCCCCcccccccccCCCC----CcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEE
Confidence 4459999999998 89999999999999999999975 79999999999999999999999999999999999999
Q ss_pred EcCCcCCCCcCccccCCc
Q 040986 489 KLPRRVPYGFHGLFVHEE 506 (514)
Q Consensus 489 ~LP~~vP~GfHG~w~~~~ 506 (514)
+||++||+||||+|++..
T Consensus 472 ~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 472 ALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred eccccccccccccccccc
Confidence 999999999999999865
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2e-112 Score=918.99 Aligned_cols=457 Identities=38% Similarity=0.612 Sum_probs=347.4
Q ss_pred cCCCccccccC-CCCCCeeeecCCCCCceEEEeecCCCCC--CCCCCCccccCCCcEEEEEEecCeEEEEEEeecchhhH
Q 040986 35 TGNFAPVDELG-PTECPVVDGKLPDSLTGMYIRNGPNPQH--MPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYK 111 (514)
Q Consensus 35 ~g~~~p~~e~~-~~~~~~v~G~iP~~L~Gtl~RnGP~~~~--~~~~~~H~FDGdGmv~~~~f~~G~v~y~~R~vrT~~~~ 111 (514)
+|+|+|+++|. +...+.|+|+||+||+|||||||||+++ ++..+.||||||||||+|+|++|+|+|+||||||++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 48999997776 6667899999999999999999999988 45568999999999999999999999999999999999
Q ss_pred HHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeEEecCCCCCcce
Q 040986 112 LERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIET 191 (514)
Q Consensus 112 ~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~ld~~~~~TLeT 191 (514)
+|+++||.+|++.|++.... .++...+ . ..........+|+|||||+.|+||||||||+|.||+||+ +||||
T Consensus 81 ~e~~~g~~~~~g~~gt~~~~---~~~~~~~-~-~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp---~TLeT 152 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPLP---DPCRNIF-R-FPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDP---DTLET 152 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTCS---THHHHTC-H-HTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEET---TTCEE
T ss_pred HHHhcCCceecccccccccC---chhhhhh-h-hccccccccCCCCceeeeEEECCEEEEEEcCCCCEEech---hHhhh
Confidence 99999999998867764311 1111100 0 001111223479999999999999999999999999997 59999
Q ss_pred eeeccCCcccc-ccCCCCceecCCCCeEEEEEecCCC--CCeEEEEEEcCCCCeeeeEeeeecCCcceeeeeeecCCEEE
Q 040986 192 LGRWDFDEELF-ASMTAHPKTDMTTKETFAFKFSPFF--SPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAI 268 (514)
Q Consensus 192 ~g~~~~~~~l~-~~~tAHPk~Dp~tG~l~~f~~~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdfaiTeny~V 268 (514)
+|..+|++.++ ..||||||+||+||++|+|+++... .+.++++++|++|++++.++.++++.++|||||+|||||+|
T Consensus 153 ~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V 232 (486)
T PF03055_consen 153 LGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVV 232 (486)
T ss_dssp EEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEE
T ss_pred cCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEE
Confidence 99999999998 5699999999999999999998654 58999999999998777777778999999999999999999
Q ss_pred EEeCccccchhHHHhCCC--CceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCC--eEEEEEEecC
Q 040986 269 FSETQLAVSAANVMLGKG--MPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGED--EVVLIATNAT 344 (514)
Q Consensus 269 ~~~~P~~~~~~~~l~~~~--~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g--~Ivvd~~~~~ 344 (514)
|+++|+.+|+.+++++.. .++.|+|+++++|+||||++++ ..++||++++||+||++||||++|| +||+|+|+++
T Consensus 233 ~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~ 311 (486)
T PF03055_consen 233 FPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYD 311 (486)
T ss_dssp EEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEEC
T ss_pred EEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecC
Confidence 999999999999984442 7999999999999999998754 5799999999999999999999664 9999999998
Q ss_pred Cchhhh----hhc--------ccccceEEEEEEeCC--CCceEEEeeccC-CccccccCCCCCCCCCceEEEeeccc---
Q 040986 345 SIENLF----LKV--------DMVHISLEKVRINLR--TGNVSRNILSAR-NLELGSINSSYIGKKNRYVFVGVGKE--- 406 (514)
Q Consensus 345 ~~~~~~----~~~--------~~~~~~l~R~~idl~--tg~v~~~~l~~~-~~EfP~In~~~~gr~yry~Y~~~~~~--- 406 (514)
+..... +.+ ....++|+||+||++ +|+++++.|.+. ++|||+||+++.||+|||+|+++...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~ 391 (486)
T PF03055_consen 312 DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERS 391 (486)
T ss_dssp SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS
T ss_pred CcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCC
Confidence 865221 111 346789999999999 888988888887 69999999999999999999876542
Q ss_pred -CCCCCeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCcee
Q 040986 407 -IPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIV 485 (514)
Q Consensus 407 -~~~~~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpV 485 (514)
..++++|+|+|+++++ .+.|+++++++++||+|||||++ .+|||||||++|+|.++++|+|+||||++|++|||
T Consensus 392 ~~~~~~~l~k~D~~tg~-~~~~~~~~~~~~~EpvFVPr~~~----~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPv 466 (486)
T PF03055_consen 392 PGFPFNGLVKVDLETGE-VQRWSFGPGCFPGEPVFVPRPGG----AEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPV 466 (486)
T ss_dssp ---EEEEEEEEETTTTE-EEEEE-TTTEEE--EEEEE-TTS-----STT-EEEEEEEEETTTTCEEEEEEETTTTCE--E
T ss_pred cCcCCCEEEEEeccccc-ceEEECCCCceecceEeccCCCC----CCCCceEEEEEEEECCCCccEEEEEeCCCCCcCce
Confidence 3468999999999998 89999999999999999999965 69999999999999999999999999999999999
Q ss_pred EEEEcCCcCCCCcCccccCC
Q 040986 486 AAVKLPRRVPYGFHGLFVHE 505 (514)
Q Consensus 486 Ar~~LP~~vP~GfHG~w~~~ 505 (514)
||++||++||+||||+|+++
T Consensus 467 Ar~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 467 ARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp EEEEESS---S-SEEEEEE-
T ss_pred EEEECCCCCCCCccccccCC
Confidence 99999999999999999874
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=4.4e-106 Score=882.20 Aligned_cols=453 Identities=25% Similarity=0.396 Sum_probs=371.9
Q ss_pred cCCCccccccC-CCCCC-eeeecCCCCC-ceEEEeecCCCCCCCC-CCCccccCCCcEEEEEEecC--eEEEEEEeecch
Q 040986 35 TGNFAPVDELG-PTECP-VVDGKLPDSL-TGMYIRNGPNPQHMPR-GPLHFFEGDGMLHSMQLSKG--RAIYTSRYVKTY 108 (514)
Q Consensus 35 ~g~~~p~~e~~-~~~~~-~v~G~iP~~L-~Gtl~RnGP~~~~~~~-~~~H~FDGdGmv~~~~f~~G--~v~y~~R~vrT~ 108 (514)
+++|+|+.+|. +...+ +|+|+||+|| +|||||||||+++.+. .++||||||||||+|+|++| +|+|+||||||+
T Consensus 61 ~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT~ 140 (610)
T PLN02969 61 QFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKTE 140 (610)
T ss_pred hhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeeccH
Confidence 68999997776 44445 6999999999 9999999999987543 46899999999999999998 599999999999
Q ss_pred hhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeEEecCCCCC
Q 040986 109 KYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGD 188 (514)
Q Consensus 109 ~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~ld~~~~~T 188 (514)
+|++|+++|+.++... ++++.+..+. .....+....+|+|||||++|+||||||||+|.||+||+ +|
T Consensus 141 ~~~~E~~ag~~~~~~~---~~~pfs~~~~-------~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP---~T 207 (610)
T PLN02969 141 AKKEEHDPETRTWRFT---YRGPFSVLKG-------GKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDS---GT 207 (610)
T ss_pred HHHHHHHhCCcceeee---eccchhcccC-------CCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCc---Cc
Confidence 9999999998776411 1121111000 000001112369999999999999999999999999986 59
Q ss_pred cceeeeccC-----------------------------Ccccc---ccCCCCceecCCCCeEEEEEecC----CCCCeEE
Q 040986 189 IETLGRWDF-----------------------------DEELF---ASMTAHPKTDMTTKETFAFKFSP----FFSPHLT 232 (514)
Q Consensus 189 LeT~g~~~~-----------------------------~~~l~---~~~tAHPk~Dp~tG~l~~f~~~~----~~~~~~~ 232 (514)
|||+|.++| .|.++ ..||||||+||.||+|++|+|.. ..++.++
T Consensus 208 LeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~ 287 (610)
T PLN02969 208 LETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFT 287 (610)
T ss_pred cceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeE
Confidence 999999998 33343 35899999999999999999976 2458899
Q ss_pred EEEEcCCCCeeeeEeeeecCCcceeeeeeecCCEEEEEeCccccchhHHHh--CCC----CceEEcCCCCc-EEEEEeCC
Q 040986 233 FSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVML--GKG----MPTVFDPEKVP-RIGIILKY 305 (514)
Q Consensus 233 ~~~~d~~g~~~~~~~~~~~~~~~~iHdfaiTeny~V~~~~P~~~~~~~~l~--~~~----~~~~~~~~~~t-~~~vipR~ 305 (514)
+|++|++|++++++++ +++.++|||||+|||||+||+++|+.+|+.+++. .|. ++|.|+|++++ +|+||||+
T Consensus 288 ~y~~d~~G~~~~~~~~-~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~ 366 (610)
T PLN02969 288 FYEFDADFKLVQRKEF-KLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRF 366 (610)
T ss_pred EEEECCCCCEecceee-cCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECc
Confidence 9999999999998887 9999999999999999999999999999886552 232 46899999995 89999999
Q ss_pred CCCC-CceEE---EecC-CeeeeeecceeeeC--CC--eEEEEEEe--cCCchhh------------hhh------cccc
Q 040986 306 ATSD-AEMKW---FNVP-GFNAMHVFNAWENG--ED--EVVLIATN--ATSIENL------------FLK------VDMV 356 (514)
Q Consensus 306 ~~~~-~~v~~---~~~~-~~f~~H~~NAyE~~--~g--~Ivvd~~~--~~~~~~~------------~~~------~~~~ 356 (514)
+++. ..++| +++| +||+||++||||++ +| +|++|+|+ |++.... ... ....
T Consensus 367 ~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (610)
T PLN02969 367 PEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKEL 446 (610)
T ss_pred CCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcccc
Confidence 7542 57899 9998 59999999999963 24 59999874 5443210 000 0113
Q ss_pred cceEEEEEEeCC-CCce---EEEeec---cCCccccccCCCCCCCCCceEEEeeccc------CCCCCeEEEEeCCCCeE
Q 040986 357 HISLEKVRINLR-TGNV---SRNILS---ARNLELGSINSSYIGKKNRYVFVGVGKE------IPKMQGVVKIDLEKEIE 423 (514)
Q Consensus 357 ~~~l~R~~idl~-tg~v---~~~~l~---~~~~EfP~In~~~~gr~yry~Y~~~~~~------~~~~~~l~k~D~~~g~~ 423 (514)
.++|+||+||+. +|++ +.+.|. +.++|||+||+++.||+|||+|+++.++ ...+|+|+|+|+++|+
T Consensus 447 ~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~- 525 (610)
T PLN02969 447 LPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGS- 525 (610)
T ss_pred cceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCC-
Confidence 578999999996 6765 446775 7899999999999999999999887642 2358999999999998
Q ss_pred EEEEEcCCCCcCCCcEEeecCC--CCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCc--eeEEEEcCCcC--CCC
Q 040986 424 VSRRFYGPGCFGGEPLFVPRNG--DHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLD--IVAAVKLPRRV--PYG 497 (514)
Q Consensus 424 ~~~~~~~~~~~~~EPvFVPrp~--~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~g--pVAr~~LP~~v--P~G 497 (514)
.+.|++|++++++|||||||++ ++ .+|||||||++|+|.++++|+|+||||++|++| ||||++||++| |+|
T Consensus 526 ~~~w~~g~~~~~~EPvFVPr~~~p~~---~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~G 602 (610)
T PLN02969 526 ARSWSTGARRFVGEPVFVPRKSSQGG---GEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMG 602 (610)
T ss_pred EEEEEeCCCCcccCCEEecCCCCCCC---CccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCcc
Confidence 8899999999999999999952 22 689999999999999999999999999999886 99999999998 999
Q ss_pred cCccccCC
Q 040986 498 FHGLFVHE 505 (514)
Q Consensus 498 fHG~w~~~ 505 (514)
|||+|+++
T Consensus 603 fHG~w~~~ 610 (610)
T PLN02969 603 FHGFWADE 610 (610)
T ss_pred ccccccCC
Confidence 99999864
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-63 Score=528.29 Aligned_cols=481 Identities=35% Similarity=0.567 Sum_probs=412.0
Q ss_pred cCCCCCCCCCCCcccCCCccccccCCCCCCeeeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecC--eE
Q 040986 21 DRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKG--RA 98 (514)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~p~~e~~~~~~~~v~G~iP~~L~Gtl~RnGP~~~~~~~~~~H~FDGdGmv~~~~f~~G--~v 98 (514)
+.+++...+++..+.++|+|+.|.++.-...++|.+|.-++|.+.|||+|+.+.+.+.+|+||||||+|+++|+.| ++
T Consensus 95 s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~tl~t 174 (582)
T KOG1285|consen 95 SDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPGTLET 174 (582)
T ss_pred cCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecCcccce
Confidence 3456677888899999999999888887788999999999999999999999988878999999999999999999 89
Q ss_pred EEEEEeecchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCC
Q 040986 99 IYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLP 178 (514)
Q Consensus 99 ~y~~R~vrT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P 178 (514)
+|+.||.+| |.+|+.+|+..+....|++.+..+..++.....+...+..++....+.+|+..+++.++++|+.|+++|
T Consensus 175 ~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~ 252 (582)
T KOG1285|consen 175 TYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLP 252 (582)
T ss_pred eEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCc
Confidence 999999999 999999997665554677666445555444444444445555445678999999999999999999998
Q ss_pred eEEecCCCCCcce-eeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCccee
Q 040986 179 YIINCTREGDIET-LGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFI 257 (514)
Q Consensus 179 ~~ld~~~~~TLeT-~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~i 257 (514)
|..-...-..+|| ||.++|...+...+.|||++||.||+++...|+....+++.|++++.+|.....+.+ ....+.|+
T Consensus 253 ~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~-~~~~~t~h 331 (582)
T KOG1285|consen 253 YPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI-FPSFPTFH 331 (582)
T ss_pred cceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee-ccCcceEE
Confidence 7765544467999 999999999999999999999999999999999887789999999999987776666 34489999
Q ss_pred eeeeecCCEEEEEeCccccchhHHHhCCCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCC--e
Q 040986 258 HDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGED--E 335 (514)
Q Consensus 258 HdfaiTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g--~ 335 (514)
||+|+|||+.|+++.++..++..+. .+..+...+..+..|+.+.++...+.+.++|.+.+.++++|..|+||+... .
T Consensus 332 h~na~eedg~vi~D~~~~~~~~~~~-~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~ 410 (582)
T KOG1285|consen 332 HDNAFEEDGCVVPDLCVYFDLSEMI-RDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWE 410 (582)
T ss_pred EeeeecccCceEEEEEEEechhhhh-cccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCce
Confidence 9999999999999999999988776 444478889999999999999988888999999999999999999996433 4
Q ss_pred EEEEEEecCCchhhhh-hcccccceEEEEEEeCCCCceEEEeecc-CCccccccCCCCCCCCCceEEEeecccCCCCCeE
Q 040986 336 VVLIATNATSIENLFL-KVDMVHISLEKVRINLRTGNVSRNILSA-RNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGV 413 (514)
Q Consensus 336 Ivvd~~~~~~~~~~~~-~~~~~~~~l~R~~idl~tg~v~~~~l~~-~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l 413 (514)
++|..-+......++. ..+....+|...++++.+|...++.+.. .++|+++||..+.||+|||+|++..++++..+++
T Consensus 411 ~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~ 490 (582)
T KOG1285|consen 411 VVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDPWPKVSGI 490 (582)
T ss_pred EEeecccCCccchhhcccccchhceeeeeeecccccccccceeecccccccccccceeecccceEEEEEecCCccCCCeE
Confidence 5555444444443332 3456668899999999998876665544 5999999999999999999999998888889999
Q ss_pred EEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcCCc
Q 040986 414 VKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRR 493 (514)
Q Consensus 414 ~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP~~ 493 (514)
+|+|+.+|. ...|..+.+++.|||+|||+|++ .+|||||++++|++....+|+|+||||++| +++||+++|.+
T Consensus 491 vKvDl~~g~-~~~w~~~~~~~~GEP~FVP~p~~----~eEDdG~Iv~~v~~~~~~~s~l~ildAK~l--~~~ar~~vp~r 563 (582)
T KOG1285|consen 491 VKVDLVTGE-VKKWREGGGRPGGEPIFVPRPGT----LEEDDGYIVSVVHDESKEKSFLLILDAKTL--EEVARVEVPTR 563 (582)
T ss_pred EEEEecCCc-eeeEecCCCccCCCceEecCCCC----cccCCcEEEEEEEcCCCCcccEEEEecccc--ceeeEEecCCC
Confidence 999999998 88999999999899999999954 799999999999999999999999999996 88999999999
Q ss_pred CCCCcCccccCCccccccc
Q 040986 494 VPYGFHGLFVHEENHSNQK 512 (514)
Q Consensus 494 vP~GfHG~w~~~~~~~~~~ 512 (514)
||+||||.|++..++..|.
T Consensus 564 vP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 564 VPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred CCCccceeEeccccccccC
Confidence 9999999999999998773
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-33 Score=298.99 Aligned_cols=343 Identities=21% Similarity=0.230 Sum_probs=247.0
Q ss_pred CeeeecCCCCCceEEEeecCCCCC-CCCCCCccccCCCcEEEEEEecCeEEEEEEeecchhhHHHHhcCCcCCCCccccc
Q 040986 50 PVVDGKLPDSLTGMYIRNGPNPQH-MPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGF 128 (514)
Q Consensus 50 ~~v~G~iP~~L~Gtl~RnGP~~~~-~~~~~~H~FDGdGmv~~~~f~~G~v~y~~R~vrT~~~~~e~~ag~~l~~~~~~~~ 128 (514)
+.+.|.||+||+|+++||||+.+. +...++|||||-+++|+++|.||++.|++||++|+.|.+.....+.+.++ |++.
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~-f~~~ 115 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGE-FAPV 115 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeecc-cccc
Confidence 678999999999999999999987 44568999999999999999999999999999999999988889988888 6554
Q ss_pred CCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEe-CCeEEEEeeCCCCeEEecCCCCCcceeeeccCCc-ccc-ccC
Q 040986 129 YGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFF-SSKLLALGESDLPYIINCTREGDIETLGRWDFDE-ELF-ASM 205 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~-~grllAl~E~g~P~~ld~~~~~TLeT~g~~~~~~-~l~-~~~ 205 (514)
++ ...+|.+.+.+.+.-..+....+|+||+++... |++++|.+|. |+...++ ++||+|+..++|.+ .+. ..+
T Consensus 116 ~~--~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet--~~~~ki~-~~tl~t~~~~~~~k~~v~~~~~ 190 (582)
T KOG1285|consen 116 AE--FPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTET--PHAVKID-PGTLETTYKVRFTKTLVQEHTA 190 (582)
T ss_pred CC--CCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCC--ceeEEec-CcccceeEeeccccceeeeeec
Confidence 42 234555555555443443334579999999999 8899999998 4544443 46999999999998 443 358
Q ss_pred CCCceecCCCCeEEE-EEecCCC---CCeEEEEEEcCCCCeee----------eEe--eeecCCcceeeeeeecCCEEEE
Q 040986 206 TAHPKTDMTTKETFA-FKFSPFF---SPHLTFSRFDANGVKQK----------DVP--ILSINRPTFIHDFAITKRFAIF 269 (514)
Q Consensus 206 tAHPk~Dp~tG~l~~-f~~~~~~---~~~~~~~~~d~~g~~~~----------~~~--~~~~~~~~~iHdfaiTeny~V~ 269 (514)
+|||++|+. |++++ ++..... ...++......+|.-.. ... .-..++|.|||+|++||||+|+
T Consensus 191 gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~ 269 (582)
T KOG1285|consen 191 GAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGR 269 (582)
T ss_pred ccCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeE
Confidence 999999986 99999 5554222 12333434433332110 111 1257789999999999999999
Q ss_pred EeCccccchhHHHhCC---------CCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCCeEEEEE
Q 040986 270 SETQLAVSAANVMLGK---------GMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIA 340 (514)
Q Consensus 270 ~~~P~~~~~~~~l~~~---------~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g~Ivvd~ 340 (514)
+++|+.+++.+++... ..++.|.|+....++++.+.++....++ ..++++.|||.||||+ ++.|++|.
T Consensus 270 ~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na~ee-dg~vi~D~ 346 (582)
T KOG1285|consen 270 FEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNAFEE-DGCVVPDL 346 (582)
T ss_pred ecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeeeecc-cCceEEEE
Confidence 9999999998877432 2356888888999999999875433333 2344899999999999 58999999
Q ss_pred EecCCchhhhh--h-cccccceEEEEEEeCCCCceEEE---eeccCCccccccCCCCCCCCCceEEEee
Q 040986 341 TNATSIENLFL--K-VDMVHISLEKVRINLRTGNVSRN---ILSARNLELGSINSSYIGKKNRYVFVGV 403 (514)
Q Consensus 341 ~~~~~~~~~~~--~-~~~~~~~l~R~~idl~tg~v~~~---~l~~~~~EfP~In~~~~gr~yry~Y~~~ 403 (514)
|++.+..-... . .-....+..|+.++.++-....+ .+....+-|| ...++.-++|...+.+.
T Consensus 347 ~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~ 414 (582)
T KOG1285|consen 347 CVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVI 414 (582)
T ss_pred EEEechhhhhcccceeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEee
Confidence 99987652111 1 12233455666666665432222 2334455677 44444446777666543
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=69.31 E-value=1.5e+02 Score=30.93 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=82.2
Q ss_pred eEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCCCeEEEEEEecCCchhhhhhcccccceEEEEEEeCC
Q 040986 289 TVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLR 368 (514)
Q Consensus 289 ~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~g~Ivvd~~~~~~~~~~~~~~~~~~~~l~R~~idl~ 368 (514)
+.+|=.--+-+.||+-... +.++-+++|-|+...- +.+ + . +-+.|-+ +.|..++||-+
T Consensus 110 ~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP---~~~-~-~--F~~lC~D-------------Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP---SGN-R-G--FSMLCGD-------------GSLLTVTLDAD 167 (342)
T ss_dssp EEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---EET-T-E--EEEEETT-------------SCEEEEEETST
T ss_pred EEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---cCC-C-c--eEEEecC-------------CceEEEEECCC
Confidence 3444444467889988753 3567788887764322 222 2 2 2233333 35677777754
Q ss_pred CCceEEE--eeccCCccccccCCCCCCCCCceEEEeecccCCCCCeEEEEeCCCCeE--EEEEEc------CCCCcCC--
Q 040986 369 TGNVSRN--ILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIE--VSRRFY------GPGCFGG-- 436 (514)
Q Consensus 369 tg~v~~~--~l~~~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k~D~~~g~~--~~~~~~------~~~~~~~-- 436 (514)
|+..++ .+.+.--|-.-.++.+.+...+|.|.... ..|.-+|+..... ...|+. +++|-|+
T Consensus 168 -Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 168 -GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp -SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred -CCEeEeeccccCCCCcccccccceECCCCeEEEEecC------CEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 554322 23333334333455566666778775421 1244445443320 111211 0122110
Q ss_pred CcEEeecCCCCCCCCCCCCcEEEEEEEeCC-----CCeeeEEEEeCCCCCCceeEEEEcCCc
Q 040986 437 EPLFVPRNGDHVDAADEDDGFVVTYIHDEN-----YGESKFLVMDAKSPNLDIVAAVKLPRR 493 (514)
Q Consensus 437 EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~-----~~~S~l~VlDA~~~~~gpVAr~~LP~~ 493 (514)
+++=+ ....|-|.++.+... +..+|+||+|.++ .+-|+|+.|++.
T Consensus 241 Q~~A~----------~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t--~krv~Ri~l~~~ 290 (342)
T PF06433_consen 241 QLIAY----------HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT--HKRVARIPLEHP 290 (342)
T ss_dssp S-EEE----------ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT--TEEEEEEEEEEE
T ss_pred eeeee----------ccccCeEEEEecCCCCCCccCCceEEEEEECCC--CeEEEEEeCCCc
Confidence 11111 123445666666643 3457999999999 789999999854
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=60.10 E-value=36 Score=35.79 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=48.3
Q ss_pred CCCCceEEEeecccCCCCCeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeE
Q 040986 393 GKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKF 472 (514)
Q Consensus 393 gr~yry~Y~~~~~~~~~~~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l 472 (514)
...-||+|.++.+ ..|.++|+.+++.+.+...| .+|.=|.= +.|.-||++..+.. ..+
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G-----~~~~~i~~--------s~DG~~~~v~n~~~----~~v 102 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG-----GNPRGIAV--------SPDGKYVYVANYEP----GTV 102 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S-----SEEEEEEE----------TTTEEEEEEEET----TEE
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC-----CCcceEEE--------cCCCCEEEEEecCC----Cce
Confidence 3446899987533 36999999999866666544 34443322 23555888887765 489
Q ss_pred EEEeCCCCCCceeEEEEcC
Q 040986 473 LVMDAKSPNLDIVAAVKLP 491 (514)
Q Consensus 473 ~VlDA~~~~~gpVAr~~LP 491 (514)
.|||++++ ++|.++...
T Consensus 103 ~v~D~~tl--e~v~~I~~~ 119 (369)
T PF02239_consen 103 SVIDAETL--EPVKTIPTG 119 (369)
T ss_dssp EEEETTT----EEEEEE--
T ss_pred eEeccccc--cceeecccc
Confidence 99999996 789888764
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.20 E-value=4.9e+02 Score=26.66 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred eCCeEEEEeeCC----C--CeEEecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcC
Q 040986 165 FSSKLLALGESD----L--PYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDA 238 (514)
Q Consensus 165 ~~grllAl~E~g----~--P~~ld~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~ 238 (514)
-+..|||..|.+ . -|.++.+ ..+|+-++...-.| .-..|-.+||+...++.-+|. ...+.++.++.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~ 118 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANYG---GGSVSVFPLDD 118 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEEEEESS----SCEEEEEECTTSSEEEEEETT---TTEEEEEEECT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCC-cceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEcc---CCeEEEEEccC
Confidence 356788998863 2 3444431 14677777654322 234577788875556656664 26788999999
Q ss_pred CCCeeeeEeeee---------cCCcceeeeeeecCC--EEEEEe
Q 040986 239 NGVKQKDVPILS---------INRPTFIHDFAITKR--FAIFSE 271 (514)
Q Consensus 239 ~g~~~~~~~~~~---------~~~~~~iHdfaiTen--y~V~~~ 271 (514)
+|++......+. ....+..|...++.+ |+++.+
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 998765432211 123577899988854 666553
No 11
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.00 E-value=6.6e+02 Score=26.26 Aligned_cols=220 Identities=13% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCeEEEEeeCC-----CCeEEecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEE-EEecCCCCCeEEEEEEcCC
Q 040986 166 SSKLLALGESD-----LPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA-FKFSPFFSPHLTFSRFDAN 239 (514)
Q Consensus 166 ~grllAl~E~g-----~P~~ld~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~-f~~~~~~~~~~~~~~~d~~ 239 (514)
+..||+.-|.| ..|++|++ +.+|+-+++....|. -..|=.+|++ |++++ -+|.. ..+.++.+..+
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~-~G~Lt~ln~~~~~g~----~p~yvsvd~~-g~~vf~AnY~~---g~v~v~p~~~d 121 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPD-DGRLTFLNRQTLPGS----PPCYVSVDED-GRFVFVANYHS---GSVSVYPLQAD 121 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCC-CCeEEEeeccccCCC----CCeEEEECCC-CCEEEEEEccC---ceEEEEEcccC
Confidence 34588777652 26888864 368888887755442 2266678876 76654 35543 56888999999
Q ss_pred CCeeeeEeeeecCC--------cceeeeeeecCC--EEEEEeCccccchhHHHhCCCCceEEcCCC--CcEEEEEeCCCC
Q 040986 240 GVKQKDVPILSINR--------PTFIHDFAITKR--FAIFSETQLAVSAANVMLGKGMPTVFDPEK--VPRIGIILKYAT 307 (514)
Q Consensus 240 g~~~~~~~~~~~~~--------~~~iHdfaiTen--y~V~~~~P~~~~~~~~l~~~~~~~~~~~~~--~t~~~vipR~~~ 307 (514)
|.+...+....-.. .+=.|.--+|.. |++.++ +-.| ++. .+.++..+ +..-..+ +.+
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D--LG~D--ri~-----~y~~~dg~L~~~~~~~v-~~G- 190 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD--LGTD--RIF-----LYDLDDGKLTPADPAEV-KPG- 190 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee--cCCc--eEE-----EEEcccCcccccccccc-CCC-
Confidence 98765433211111 122565556644 444443 2222 110 11111100 0001111 221
Q ss_pred CCCceEEEecCCeeeeeecceeeeCCCeEEEEEEecCCchhhhhhcccccceEEEEEEeCCCCceEE-EeeccCCccccc
Q 040986 308 SDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSR-NILSARNLELGS 386 (514)
Q Consensus 308 ~~~~v~~~~~~~~f~~H~~NAyE~~~g~Ivvd~~~~~~~~~~~~~~~~~~~~l~R~~idl~tg~v~~-~~l~~~~~EfP~ 386 (514)
-.|...+|| +++++.--+|.. .++..-|..+...|++++ +.+...+-.|..
T Consensus 191 --------~GPRHi~FH-------pn~k~aY~v~EL-------------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 191 --------AGPRHIVFH-------PNGKYAYLVNEL-------------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred --------CCcceEEEc-------CCCcEEEEEecc-------------CCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 112345666 355654333332 234556666666677653 334444445554
Q ss_pred cCCC---CCCCCCceEEEeecccCCCCCeEEEEeCCCCeE-EEEEEcCCCCcC
Q 040986 387 INSS---YIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIE-VSRRFYGPGCFG 435 (514)
Q Consensus 387 In~~---~~gr~yry~Y~~~~~~~~~~~~l~k~D~~~g~~-~~~~~~~~~~~~ 435 (514)
-++. .....-||.|++.... ..-++.++|-.+|+. ...++.-+|++|
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 4443 2334568999775322 124578888888753 335666666664
No 12
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.45 E-value=99 Score=32.51 Aligned_cols=88 Identities=25% Similarity=0.200 Sum_probs=44.9
Q ss_pred cccccCCCCCCCCCceEEEeecccCCCCCeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEE
Q 040986 383 ELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYI 462 (514)
Q Consensus 383 EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v 462 (514)
-|-+.+|+ -+|+|....-. +-.+.|.-+|.++.+.......+++.-+-.+-|- .|--+|.+.+
T Consensus 272 lFi~thP~-----s~~vwvd~~~~-~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~-----------~dG~~v~vS~ 334 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLN-PDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN-----------PDGKEVWVSV 334 (369)
T ss_dssp --EE--TT------SEEEEE-TT--SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE------------TTSSEEEEEE
T ss_pred ceeecCCC-----CccEEeeccCC-CCCceEEEEECcCcceeEEEeccCCCcEeccEEC-----------CCCCEEEEEE
Confidence 66666665 36888752211 1257899999999864433333333111122222 2223455555
Q ss_pred EeCCCCeeeEEEEeCCCCCCceeEEEEcCC
Q 040986 463 HDENYGESKFLVMDAKSPNLDIVAAVKLPR 492 (514)
Q Consensus 463 ~d~~~~~S~l~VlDA~~~~~gpVAr~~LP~ 492 (514)
++.+. .|+|+|++++ +.++|+.++.
T Consensus 335 ~~~~~---~i~v~D~~Tl--~~~~~i~~~t 359 (369)
T PF02239_consen 335 WDGNG---AIVVYDAKTL--KEKKRIPVPT 359 (369)
T ss_dssp E--TT---EEEEEETTTT--EEEEEEE--S
T ss_pred ecCCC---EEEEEECCCc--EEEEEEEeeC
Confidence 56433 9999999997 8899999653
No 13
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=24.26 E-value=3.5e+02 Score=25.32 Aligned_cols=65 Identities=25% Similarity=0.346 Sum_probs=40.0
Q ss_pred CeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEc
Q 040986 411 QGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKL 490 (514)
Q Consensus 411 ~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~L 490 (514)
..|..+|..+|++.++...+++ ...++.-+- -++|+|++. +....|..+|+.+- ..+.+..+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~---------~~~~~v~~~-----~~~~~l~~~d~~tG--~~~W~~~~ 64 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPG--IGGPVATAV---------PDGGRVYVA-----SGDGNLYALDAKTG--KVLWRFDL 64 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSS--CSSEEETEE---------EETTEEEEE-----ETTSEEEEEETTTS--EEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCC--CCCccceEE---------EeCCEEEEE-----cCCCEEEEEECCCC--CEEEEeec
Confidence 4689999999985555544321 122221111 145566666 25578999999883 67888888
Q ss_pred CCc
Q 040986 491 PRR 493 (514)
Q Consensus 491 P~~ 493 (514)
+..
T Consensus 65 ~~~ 67 (238)
T PF13360_consen 65 PGP 67 (238)
T ss_dssp SSC
T ss_pred ccc
Confidence 643
No 14
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=21.30 E-value=2.4e+02 Score=30.01 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=40.3
Q ss_pred cceeEEEEeCCeEEEEeeCCCCeEEecCCCCCcce-eeeccCC---ccccccCCCCceecCCCCeEEEEEecCCCCCeEE
Q 040986 157 LANTSLAFFSSKLLALGESDLPYIINCTREGDIET-LGRWDFD---EELFASMTAHPKTDMTTKETFAFKFSPFFSPHLT 232 (514)
Q Consensus 157 ~aNt~v~~~~grllAl~E~g~P~~ld~~~~~TLeT-~g~~~~~---~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~ 232 (514)
.+-|..-.+.+|.+|||+.- .|++ ++..+++ |-| -|-+|++|+-+|-+|= +...++
T Consensus 230 i~tTGfsr~seRq~aLwdp~-----------nl~eP~~~~elDtSnGvl------~PFyD~dt~ivYl~GK---GD~~IR 289 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPN-----------NLEEPIALQELDTSNGVL------LPFYDPDTSIVYLCGK---GDSSIR 289 (472)
T ss_pred eeeeccccccccceeccCcc-----------cccCcceeEEeccCCceE------EeeecCCCCEEEEEec---CCcceE
Confidence 45566667889999999542 3333 3333333 222 2889999987776654 235678
Q ss_pred EEEEcCCC
Q 040986 233 FSRFDANG 240 (514)
Q Consensus 233 ~~~~d~~g 240 (514)
||++..+-
T Consensus 290 YyEit~d~ 297 (472)
T KOG0303|consen 290 YFEITNEP 297 (472)
T ss_pred EEEecCCC
Confidence 88886554
No 15
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=20.71 E-value=2.8e+02 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=22.1
Q ss_pred ecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEee
Q 040986 211 TDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPI 248 (514)
Q Consensus 211 ~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~ 248 (514)
++|+++.||++.=+. +. +++++.+|++++++++
T Consensus 29 y~pd~~tLfaV~d~~---~~--i~els~~G~vlr~i~l 61 (248)
T PF06977_consen 29 YNPDTGTLFAVQDEP---GE--IYELSLDGKVLRRIPL 61 (248)
T ss_dssp EETTTTEEEEEETTT---TE--EEEEETT--EEEEEE-
T ss_pred EcCCCCeEEEEECCC---CE--EEEEcCCCCEEEEEeC
Confidence 477889998776542 33 5789999999887765
No 16
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=20.52 E-value=6.1e+02 Score=27.02 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred ceeeeCCCeEEEEEEecCCchhhhhhcccccceEEEEEEeCCCCceEEEeeccCCccccccCCCCCCCCCceEEEeeccc
Q 040986 327 NAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKE 406 (514)
Q Consensus 327 NAyE~~~g~Ivvd~~~~~~~~~~~~~~~~~~~~l~R~~idl~tg~v~~~~l~~~~~EfP~In~~~~gr~yry~Y~~~~~~ 406 (514)
|+|-+++.++++-. ...++---|.|||.+++++ +|.+... ...--.+...+-|+.|.+...
T Consensus 41 ~~ft~dG~kllF~s--------------~~dg~~nly~lDL~t~~i~--QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~- 101 (386)
T PF14583_consen 41 NCFTDDGRKLLFAS--------------DFDGNRNLYLLDLATGEIT--QLTDGPG--DNTFGGFLSPDDRALYYVKNG- 101 (386)
T ss_dssp --B-TTS-EEEEEE---------------TTSS-EEEEEETTT-EEE--E---SS---B-TTT-EE-TTSSEEEEEETT-
T ss_pred CCcCCCCCEEEEEe--------------ccCCCcceEEEEcccCEEE--ECccCCC--CCccceEEecCCCeEEEEECC-
Q ss_pred CCCCCeEEEEeCCCCeEEEEEEcCCCC
Q 040986 407 IPKMQGVVKIDLEKEIEVSRRFYGPGC 433 (514)
Q Consensus 407 ~~~~~~l~k~D~~~g~~~~~~~~~~~~ 433 (514)
..|.++|++|+++...|..++++
T Consensus 102 ----~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 102 ----RSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp ----TEEEEEETTT--EEEEEE--TTE
T ss_pred ----CeEEEEECCcCcEEEEEECCccc
No 17
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=20.16 E-value=7.3e+02 Score=26.56 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCceEEcCCCCcEEEEEeCCCCCCCceEEEecCC-eeeeeecceeeeC
Q 040986 286 GMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPG-FNAMHVFNAWENG 332 (514)
Q Consensus 286 ~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~-~f~~H~~NAyE~~ 332 (514)
+-.|-|..+...-+||+-| +| +.||+||+.+ .=.+|++|-|...
T Consensus 265 Gvl~PFyD~dt~ivYl~GK--GD-~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGK--GD-SSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ceEEeeecCCCCEEEEEec--CC-cceEEEEecCCCceeEEecccccC
Confidence 4445555555678899988 34 4699999853 2357999999753
Done!