Query 040986
Match_columns 514
No_of_seqs 131 out of 1058
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 03:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 39.2 4.2 0.00031 24.4 0.7 16 210-225 3-18 (31)
2 d1m7ja2 b.92.1.6 (A:420-480) N 25.2 7.3 0.00053 26.9 0.1 36 469-506 7-42 (61)
3 d1qnia2 b.69.3.1 (A:10-450) Ni 20.2 1.7E+02 0.012 27.7 9.3 82 396-492 83-176 (441)
4 d1qksa2 b.70.2.1 (A:136-567) C 16.6 63 0.0046 30.0 5.0 33 457-491 381-413 (432)
5 d1k91a_ b.104.1.1 (A:) Calreti 15.5 34 0.0024 21.1 1.6 11 436-446 1-11 (37)
6 d1hzua2 b.70.2.1 (A:118-543) C 13.8 77 0.0056 28.9 4.8 33 457-491 375-407 (426)
7 d2ghsa1 b.68.6.1 (A:20-314) Re 13.2 1E+02 0.0073 27.0 5.2 40 210-256 205-244 (295)
8 d1jmxb_ b.69.2.2 (B:) Quinohem 12.9 1.9E+02 0.014 24.0 7.0 62 411-492 272-333 (346)
9 d1qksa2 b.70.2.1 (A:136-567) C 12.7 4.5E+02 0.033 23.5 12.7 105 363-491 45-150 (432)
10 d2bnga1 d.17.4.8 (A:13-144) Un 9.5 1.1E+02 0.0079 23.0 3.6 27 87-113 94-120 (132)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=39.23 E-value=4.2 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.5
Q ss_pred eecCCCCeEEEEEecC
Q 040986 210 KTDMTTKETFAFKFSP 225 (514)
Q Consensus 210 k~Dp~tG~l~~f~~~~ 225 (514)
++||.||++|-..|.+
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999999887764
No 2
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=25.24 E-value=7.3 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=29.6
Q ss_pred eeeEEEEeCCCCCCceeEEEEcCCcCCCCcCccccCCc
Q 040986 469 ESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEE 506 (514)
Q Consensus 469 ~S~l~VlDA~~~~~gpVAr~~LP~~vP~GfHG~w~~~~ 506 (514)
..+|+|||..++ ..-|...-|...+-|++..|++..
T Consensus 7 ~ADlvvfDp~~i--~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATV--ADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTC--BCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHc--cCcccccccccccceeEEEEECCE
Confidence 468999999988 445777788999999999998865
No 3
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=20.16 E-value=1.7e+02 Score=27.67 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=47.2
Q ss_pred CceEEEeecccCCCCCeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEE------------
Q 040986 396 NRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIH------------ 463 (514)
Q Consensus 396 yry~Y~~~~~~~~~~~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~------------ 463 (514)
-||.|.+... -+.|.++|+++++..+....+.+.-+.--.|.|.+. -.|++...-
T Consensus 83 Gr~lfV~d~~----~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~---------t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 83 GKYLFINDKA----NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK---------TNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp EEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB---------CCEEEEEECSCEESSCSSSCC
T ss_pred CCEEEEEcCC----CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCC---------EEEEEeccCCcccccCccccc
Confidence 3677755422 368999999999755555555443332234555432 224443221
Q ss_pred eCCCCeeeEEEEeCCCCCCceeEEEEcCC
Q 040986 464 DENYGESKFLVMDAKSPNLDIVAAVKLPR 492 (514)
Q Consensus 464 d~~~~~S~l~VlDA~~~~~gpVAr~~LP~ 492 (514)
+.....+.+.++|+.++ ..++++.++.
T Consensus 150 ~~~~~~~~~~~iD~~t~--~v~~qI~v~~ 176 (441)
T d1qnia2 150 SLDNSYTMFTAIDAETM--DVAWQVIVDG 176 (441)
T ss_dssp CGGGEEEEEEEEETTTC--SEEEEEEESS
T ss_pred ccccccceEEeecCccc--eeeEEEecCC
Confidence 11122345677899996 6688888774
No 4
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=16.57 E-value=63 Score=30.05 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred EEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcC
Q 040986 457 FVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLP 491 (514)
Q Consensus 457 ~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP 491 (514)
+|++.++...+..+.++|+|++++ +.++++.-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~--k~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTL--ELKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTT--EEEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCc--eEEeEecCC
Confidence 677777777777889999999996 667887665
No 5
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.54 E-value=34 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=9.2
Q ss_pred CCcEEeecCCC
Q 040986 436 GEPLFVPRNGD 446 (514)
Q Consensus 436 ~EPvFVPrp~~ 446 (514)
+||-|||.|..
T Consensus 1 ~eP~~IpDp~A 11 (37)
T d1k91a_ 1 GKPEHIPDPDA 11 (37)
T ss_dssp CCCSEEECSSC
T ss_pred CCccccCCCCC
Confidence 69999999953
No 6
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.75 E-value=77 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.2
Q ss_pred EEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcC
Q 040986 457 FVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLP 491 (514)
Q Consensus 457 ~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP 491 (514)
+|++.++..+...+.+.|+|++++ +.++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~--k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTL--KLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTT--EEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCC--eEEEEECCC
Confidence 677777777777888999999996 677877654
No 7
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.17 E-value=1e+02 Score=26.97 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=27.0
Q ss_pred eecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcce
Q 040986 210 KTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTF 256 (514)
Q Consensus 210 k~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 256 (514)
.+|.+ |.+|.-.+..+ .+.++|++|+++..+.+ +.+.++.
T Consensus 205 ~vD~~-GnlWva~~~~g-----~V~~~dp~G~~~~~i~l-P~~~~T~ 244 (295)
T d2ghsa1 205 VCDAE-GHIWNARWGEG-----AVDRYDTDGNHIARYEV-PGKQTTC 244 (295)
T ss_dssp EECTT-SCEEEEEETTT-----EEEEECTTCCEEEEEEC-SCSBEEE
T ss_pred EEcCC-CCEEeeeeCCC-----ceEEecCCCcEeeEecC-CCCceEE
Confidence 45765 88886666432 37899999999877665 5444443
No 8
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=12.86 E-value=1.9e+02 Score=24.04 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=37.8
Q ss_pred CeEEEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEc
Q 040986 411 QGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKL 490 (514)
Q Consensus 411 ~~l~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~L 490 (514)
+.|..+|..+++.......+ ..+.-..|-| |.-+|.+...| ..+.|+|++++ ++|+++.+
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~--~~~~~va~s~-----------DG~~l~v~~~d-----~~v~v~D~~t~--~~i~~i~~ 331 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLD--HTYYCVAFDK-----------KGDKLYLGGTF-----NDLAVFNPDTL--EKVKNIKL 331 (346)
T ss_dssp SEEEEEETTTTEEEEEEECS--SCCCEEEECS-----------SSSCEEEESBS-----SEEEEEETTTT--EEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEcCC--CCEEEEEEcC-----------CCCEEEEEeCC-----CcEEEEECccC--CEEEEEEC
Confidence 56888899998744333332 2222233332 22245443222 47999999995 88999999
Q ss_pred CC
Q 040986 491 PR 492 (514)
Q Consensus 491 P~ 492 (514)
|-
T Consensus 332 p~ 333 (346)
T d1jmxb_ 332 PG 333 (346)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 9
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=12.67 E-value=4.5e+02 Score=23.47 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=55.1
Q ss_pred EEEeCCCCceEEEeeccCCccccccCCCCCCCCCceEEEeecccCCCCCeEEEEeCCCCeEEEEEEcCCCCcCCCcE-Ee
Q 040986 363 VRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPL-FV 441 (514)
Q Consensus 363 ~~idl~tg~v~~~~l~~~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k~D~~~g~~~~~~~~~~~~~~~EPv-FV 441 (514)
..+|++|+++..+.-......--++.| .-||.|.++.+ +.|..+|+.+++.......+.+ .+|. +|
T Consensus 45 ~v~D~~t~~v~~~~~~g~~~~~v~fSp-----DG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~---~~~~~~~ 111 (432)
T d1qksa2 45 ALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIG---SEARSIE 111 (432)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECC---SEEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCeeEEEECC-----CCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecC---CCCCCeE
Confidence 456778887764422221111112222 24788865432 4688889887651112222222 2232 22
Q ss_pred ecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcC
Q 040986 442 PRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLP 491 (514)
Q Consensus 442 Prp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP 491 (514)
-.+. -+.|.-+|++..++. ..+.|+|+.+. ++++++...
T Consensus 112 ~s~~-----~SpDG~~l~vs~~~~----~~v~i~d~~t~--~~~~~~~~~ 150 (432)
T d1qksa2 112 TSKM-----EGWEDKYAIAGAYWP----PQYVIMDGETL--EPKKIQSTR 150 (432)
T ss_dssp ECCS-----TTCTTTEEEEEEEET----TEEEEEETTTC--CEEEEEECC
T ss_pred Eecc-----cCCCCCEEEEEcCCC----CeEEEEeCccc--cceeeeccC
Confidence 2231 234555787766552 46899999884 677777654
No 10
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.55 E-value=1.1e+02 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=22.1
Q ss_pred cEEEEEEecCeEEEEEEeecchhhHHH
Q 040986 87 MLHSMQLSKGRAIYTSRYVKTYKYKLE 113 (514)
Q Consensus 87 mv~~~~f~~G~v~y~~R~vrT~~~~~e 113 (514)
+++-|+|+||++.+..-|..+..+.+.
T Consensus 94 ~~~~~~v~dGkI~~~~~y~D~~~~~~~ 120 (132)
T d2bnga1 94 VCGVFEVDDGRITLWRDYFDVYDMFKG 120 (132)
T ss_dssp EEEEEEEETTEEEEEEEECCHHHHHHH
T ss_pred EEEEEEEcCCEEEEEEEEeCHHHHHHH
Confidence 567788999999998889988777654
Done!