BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040987
(762 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H VS + S DG+ SGGK+GV+++W L GKK + S + SP+
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 69 RGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
G R +VS N ++ +V S TV +++ S S+L GH V+TV V P
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSM 168
S C + DG + WD + + L +++ I ++
Sbjct: 574 -------SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
+L GH++PVT VI P + S +AS D TIK WD+ + +T+
Sbjct: 103 ALSGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYETGDFERTL 146
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
T+ ++ TG +L+GH V + + + K+L+ C S D TIK WDF E
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDI----SFDHSGKLLASC---SADMTIKLWDFQGFE 183
Query: 155 LLKTI 159
++T+
Sbjct: 184 CIRTM 188
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 94 NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153
N V ++ +TG ++ L+GH VT+V V P S C ++ DG + WD +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG-------SLCASSDKDGVARLWDLTKG 228
Query: 154 ELLKTI 159
E L +
Sbjct: 229 EALSEM 234
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 51/248 (20%)
Query: 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKY-FGIRKQRKLLIWKVPD 265
P P+ + C L + RL G + +S++G + L +W + +
Sbjct: 45 PNPDRHSSE-CSYGLPDRRLEGHSAFVSD-----VALSNNGNFAVSASWDHSLRLWNLQN 98
Query: 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATXXXXXXX 325
+ + L HTK + +AF P R + +G + +W G+
Sbjct: 99 GQCQYKF-----LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA--- 150
Query: 326 XXXXXXXXRPGVRDNDDADLCTTWHWHPSEVSVLIFSS--DGAYLYSGGKEGVLVVWQLD 383
H VS + FS D + SGG + ++ VW L
Sbjct: 151 --------------------------HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 384 TGKKKFLPRIGSPLLYFTE---SPDPSLSSISCADNQVHLLKMPSMEIIRSISG---IKL 437
TG + + + Y T SPD SL + S D L + E + ++ I
Sbjct: 185 TG--RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQ 242
Query: 438 PCPLPEEY 445
C P Y
Sbjct: 243 ICFSPNRY 250
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 80 AFSNDVKRLLV-CTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
A+S D K L ++IF +TG + +LEGH P+ ++ P S T
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV-------T 223
Query: 139 ASLDGTIKYWDFSVPELLKTI 159
AS DG IK +D L T+
Sbjct: 224 ASDDGYIKIYDVQHANLAGTL 244
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPDPSLSSISCADNQ 417
+ +S DG YL SG +G++ ++ + TGK L P+ T SPD L + D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 418 VHLLKMPSMEIIRSISG 434
+ + + + ++SG
Sbjct: 230 IKIYDVQHANLAGTLSG 246
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 66/341 (19%), Positives = 132/341 (38%), Gaps = 54/341 (15%)
Query: 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY 399
N + L T H S V + FS DG + S + + +W + + L S +
Sbjct: 290 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWG 349
Query: 400 FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459
SPD + + D V L + +++++++G + R +AF+ DG
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPDGQ 398
Query: 460 LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGXXXXXXXXXXXXSQDGSLMSTVDIK 519
+A +++ + + +R +Q + D ++ S D K
Sbjct: 399 TIASASDDKTVKLW----NRNGQLLQTLTGH------SSSVWGVAFSPDDQTIASASDDK 448
Query: 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579
+K W +N + L T+ + + VAF P+ + S+S
Sbjct: 449 ----------TVKLW---NRNGQL-LQTLTGHS---SSVRGVAFSPDGQTIASASDDKTV 491
Query: 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPDR 638
K+W N +L Q + H+ ++ AFS DG +A A++ + LW+ +
Sbjct: 492 KLWNRNGQLLQT------LTGHS------SSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Query: 639 NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679
+L + G + + + ++F + + + S S + +WN
Sbjct: 540 QLLQTLTGHS-SSVWGVAFSPDGQTIASAS--SDKTVKLWN 577
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 119/311 (38%), Gaps = 53/311 (17%)
Query: 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY 399
N + L T H S V + FS DG + S + + +W + + L S +
Sbjct: 85 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144
Query: 400 FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459
SPD + + D V L + +++++++G + +AF+ DG
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVWGVAFSPDGQ 193
Query: 460 LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGXXXXXXXXXXXXSQDG-SLMSTVDI 518
+A +++ + + +R +Q + S DG ++ S D
Sbjct: 194 TIASASDDKTVKLW----NRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASDD 242
Query: 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD 578
K +K W +N + L T+ + ++ VAF P+ + S+S
Sbjct: 243 K----------TVKLW---NRNGQL-LQTLTGHS---SSVNGVAFRPDGQTIASASDDKT 285
Query: 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPD 637
K+W N +L Q + H+ ++ AFS DG +A A++ + LW+ +
Sbjct: 286 VKLWNRNGQLLQT------LTGHS------SSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Query: 638 RNVLVAVIGET 648
L + G +
Sbjct: 334 GQHLQTLTGHS 344
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 52/331 (15%)
Query: 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY 399
N + L T H S V + FS DG + S + + +W + + L S +
Sbjct: 126 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 400 FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459
SPD + + D V L + +++++++G + R +AF+ DG
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPDGQ 234
Query: 460 LVALRAENYCIHFYS-------LLDDRGISEVQVCER-NHQPGXXXXXXXXXXXXSQDGS 511
+A +++ + ++ L S V R + Q +++G
Sbjct: 235 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ 294
Query: 512 LMSTV--------DIKLAEEG--IGSLV---CLKFWVSGTQNKEFTLSTIVYEPHRDAGI 558
L+ T+ + + +G I S +K W Q+ L T+ + +
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----LQTLTGHS---SSV 347
Query: 559 SAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618
VAF P+ + S+S K+W N +L Q + H+ ++ AFS
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT------LTGHS------SSVRGVAFSP 395
Query: 619 DGSVLAVAAET-VITLWDPDRNVLVAVIGET 648
DG +A A++ + LW+ + +L + G +
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 80 AFSNDVKRLLVCTSN-TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
A S D K C S+ ++++ + +GH + + + S TK+ WT
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI---SNDGTKL----WT 200
Query: 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSM 168
LD T++ WD L+ D IFS+
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS--PLLY-FTESPDPSLSSISCADNQVHL 420
DG L GG+ L +W L + + S P Y SPD + C+D + +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 421 LKMPSMEIIRSISG 434
+ + ++R G
Sbjct: 168 WDLHNQTLVRQFQG 181
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 59 EYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVT 118
E A K + +Y+S+ ++D++ L T +++ +G + S GH A V
Sbjct: 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL 200
Query: 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMV--IPSLLRQ 176
+ + P+ T T + C D WD + ++ + S + V PS
Sbjct: 201 CLDLAPSETGNTFVSGGC-----DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255
Query: 177 PAQSDEKPPKLF 188
+ SD+ +L+
Sbjct: 256 ASGSDDATCRLY 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 80 AFSNDVKRLLVCTSN-TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
FS D +R+ C ++ T+ +F TG ++ ++ H+ V + A + + ++ C
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV----LCCAFSTDDRFIATC-- 681
Query: 139 ASLDGTIKYWDFSVPELLKTID 160
S+D +K W+ EL+ T D
Sbjct: 682 -SVDKKVKIWNSMTGELVHTYD 702
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIP 171
+P K+L+ C S DGT+K WD + K+I+VK ++ P
Sbjct: 758 SPDDKLLASC---SADGTLKLWDATSANERKSINVKQFFLNLEDP 799
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 32/150 (21%)
Query: 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIW--RGFGDRTFATXXXXXXXXXXXXXXXRPGV 337
H K + +A+ P ++AAG + IW DRTF
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF--------------------- 95
Query: 338 RDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-----LPR 392
+ DL H +EV + +S+DG YL + ++ + +W+ D +++ L
Sbjct: 96 ----EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151
Query: 393 IGSPLLYFTESPDPSLSSISCADNQVHLLK 422
+ + P +L + S D+ V + K
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 236 KEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR 294
E + + S+ G Y + + + IW+ D E + H++ + + +HP++
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWE-TDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 295 IVAAGDVTGRILIWRGFGD 313
++A+ + IW+ + D
Sbjct: 167 LLASSSYDDTVRIWKDYDD 185
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415
V+ + FS +LY+ G +G++ W L T KK + F + + S+ I+C+D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------IKNFAKFNEDSVVKIACSD 304
Query: 416 N 416
N
Sbjct: 305 N 305
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF 389
H SEV L + SDG L SGG + V+ +W + KF
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415
V+ + FS +LY+ G +G++ W L T KK + F + + S+ I+C+D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------IKNFAKFNEDSVVKIACSD 304
Query: 416 N 416
N
Sbjct: 305 N 305
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415
V+ + FS +LY+ G +G++ W L T KK + F + + S+ I+C+D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------IKNFAKFNEDSVVKIACSD 304
Query: 416 N 416
N
Sbjct: 305 N 305
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415
V+ + FS +LY+ G +G++ W L T KK + F + + S+ I+C+D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------IKNFAKFNEDSVVKIACSD 304
Query: 416 N 416
N
Sbjct: 305 N 305
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H ++ + S DG+ SGGK+G ++W L+ GK + G + SP+
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 244
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385
H VS ++ SSDG + SG +G L +W L TG
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H ++ + S DG+ SGGK+G ++W L+ GK + G + SP+
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 267
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385
H VS ++ SSDG + SG +G L +W L TG
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 616 FSADGSVLA-VAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQ 674
FSA+GS +A V+ ++ + L D D+ + VA + P++ ++F+ S LVA P
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPV 268
Query: 675 LSVWNMSKLSISWSYLLHVEGQ 696
L ++ + +S+ L V Q
Sbjct: 269 LFTYDSAAGKLSFGGRLDVPKQ 290
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 616 FSADGSVLA-VAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQ 674
FSA+GS +A V+ ++ + L D D+ + VA + P++ ++F+ S LVA P
Sbjct: 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPV 268
Query: 675 LSVWNMSKLSISWSYLLHVEGQ 696
L ++ + +S+ L V Q
Sbjct: 269 LFTYDSAAGKLSFGGRLDVPKQ 290
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
T+ I+ T +++LEGH + V+ + P L + S DGT+K W+ S +
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYK 261
Query: 155 LLKTIDV 161
+ KT++V
Sbjct: 262 VEKTLNV 268
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 258 LLIWKVPDVEAERVVMRK--ITLH-HTKKLTVLAFHPT-QRIVAAGDVTGRILIW 308
+++W++PD + +R+ ITL HTK++ ++A+HPT Q ++ + IL+W
Sbjct: 106 VMVWEIPD-GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 96 VSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPEL 155
+ I+S G +L GH+A VT + ++ +LS ASLDGTI+ W+
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDR---GRNVLS----ASLDGTIRLWECGTGTT 215
Query: 156 LKTIDVK 162
+ T + K
Sbjct: 216 IHTFNRK 222
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 96 VSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPEL 155
+ I+S G +L GH+A VT + ++ +LS ASLDGTI+ W+
Sbjct: 160 LKIWSVKDGSNPRTLIGHRATVTDIAIIDR---GRNVLS----ASLDGTIRLWECGTGTT 212
Query: 156 LKTIDVK 162
+ T + K
Sbjct: 213 IHTFNRK 219
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G +++W L K + + SP+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG+ + +L H PV+ V
Sbjct: 104 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF- 160
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS +L
Sbjct: 161 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
+D KL+ Y S +T HK E C + GG + E
Sbjct: 215 LDND---LKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 260
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 261 DNMV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 298
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 299 SAALENDKTIKLWK 312
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 262
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 263 MVYIWNLQTKEIVQKLQ 279
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G +++W L K + + SP+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 258 LLIWKVPDVEAERVVMRK--ITLH-HTKKLTVLAFHPT-QRIVAAGDVTGRILIW 308
+++W++PD + +R+ ITL HTK++ ++A+HPT Q ++ + IL+W
Sbjct: 106 VMVWEIPD-GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G +++W L K + + SP+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G +++W L K + + SP+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G +++W L K + + SP+
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
T+ I+ T +++LEGH + V+ + P L + S DGT+K W+ S +
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYK 261
Query: 155 LLKTIDV 161
+ KT++V
Sbjct: 262 VEKTLNV 268
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 229
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 281
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 282 LVYIWNLQTKEIVQKLQ 298
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 249
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 250 KTYTGHKNEKYCIFA 264
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 75 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 133 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 167
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 259
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 260 LVYIWNLQTKEIVQKLQ 276
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 227
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 228 KTYTGHKNEKYCIFA 242
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 53 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 111 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 145
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 101 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 157
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 158 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 208
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 209 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 257
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 258 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 295
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 296 SAALENDKTIKLWK 309
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 231
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 283
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 284 LVYIWNLQTKEIVQKLQ 300
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 251
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 252 KTYTGHKNEKYCIFA 266
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 77 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 135 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 169
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 259
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 260 LVYIWNLQTKEIVQKLQ 276
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 227
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 228 KTYTGHKNEKYCIFA 242
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 53 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 111 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 145
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 101 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 157
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 158 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 208
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 209 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 257
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 258 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 295
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 296 SAALENDKTIKLWK 309
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG+ + +L H PV+ V
Sbjct: 104 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF- 160
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 161 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 211
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 212 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 260
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 261 DNMV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 298
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 299 SAALENDKTIKLWK 312
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 262
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 263 MVYIWNLQTKEIVQKLQ 279
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
T+ I+ T +++LEGH + V+ + P L + S DGT+K W+ S +
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYK 261
Query: 155 LLKTIDV 161
+ KT++V
Sbjct: 262 VEKTLNV 268
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
T+ I+ T +++LEGH + V+ + P L + S DGT+K W+ S +
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYK 261
Query: 155 LLKTIDV 161
+ KT++V
Sbjct: 262 VEKTLNV 268
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 208
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 260
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 261 LVYIWNLQTKEIVQKLQ 277
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 228
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 229 KTYTGHKNEKYCIFA 243
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 54 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 112 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 146
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 102 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 158
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 159 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 209
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 210 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 258
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 259 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 296
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 297 SAALENDKTIKLWK 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 212
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 264
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 265 LVYIWNLQTKEIVQKLQ 281
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 232
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 233 KTYTGHKNEKYCIFA 247
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 106 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 162
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 163 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 213
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 214 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 262
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 263 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 300
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 301 SAALENDKTIKLWK 314
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 58 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 116 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 150
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 265
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 266 LVYIWNLQTKEIVQKLQ 282
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 233
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 234 KTYTGHKNEKYCIFA 248
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 107 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 163
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 164 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 214
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 215 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 263
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 264 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 301
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 302 SAALENDKTIKLWK 315
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 59 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 117 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 151
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 265
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 266 LVYIWNLQTKEIVQKLQ 282
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 233
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 234 KTYTGHKNEKYCIFA 248
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 51/223 (22%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
+V I+ TG + +L H PV+ V + + I+S +S DG + WD + +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF---NRDGSLIVS----SSYDGLCRIWDTASGQ 188
Query: 155 LLKT-ID-----VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208
LKT ID V F FS P+ A + + KL+ Y S +T HK E
Sbjct: 189 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKY 244
Query: 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA 268
C + GG + E ++ IW + E
Sbjct: 245 ----------CIFANFSVTGGKWIVSGSEDNLV-----------------YIWNLQTKE- 276
Query: 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR--ILIWR 309
+++K+ HT + A HPT+ I+A+ + I +W+
Sbjct: 277 ---IVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 59 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 117 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 151
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 203
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 255
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 256 LVYIWNLQTKEIVQKLQ 272
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 223
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 224 KTYTGHKNEKYCIFA 238
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 49 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 107 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 141
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 97 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 153
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 154 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 204
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 205 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 253
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 254 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 291
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 292 SAALENDKTIKLWK 305
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 224
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 276
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 277 LVYIWNLQTKEIVQKLQ 293
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 244
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 245 KTYTGHKNEKYCIFA 259
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 70 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 128 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 162
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 118 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 174
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 175 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 225
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 226 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 274
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 275 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 312
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 313 SAALENDKTIKLWK 326
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391
H EV L ++ DG +L SGG + ++ VW G+ ++P
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 206
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 258
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 259 LVYIWNLQTKEIVQKLQ 275
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 100 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 156
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 157 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 207
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 208 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 256
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 257 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 294
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 295 SAALENDKTIKLWK 308
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 52 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 110 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 144
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391
H EV L ++ DG +L SGG + ++ VW G+ ++P
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENY 468
+ DN + L + +++ +G K E+Y C F+ GG + +E+
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHK-----NEKY---CIFANFSVTGGKWIVSGSEDN 265
Query: 469 CIHFYSLLDDRGISEVQ 485
++ ++L + ++Q
Sbjct: 266 LVYIWNLQTKEIVQKLQ 282
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 98 IFSTSTGLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156
I+ T++G + +L + PV+ V P Y A+LD T+K WD+S + L
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNG-------KYILAATLDNTLKLWDYSKGKCL 233
Query: 157 KTI----DVKFSIFS 167
KT + K+ IF+
Sbjct: 234 KTYTGHKNEKYCIFA 248
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 59 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 117 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 151
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K ++G +YV N L+V S +V I+ TG + +L H PV+ V
Sbjct: 107 KTLKGHSNYVFC--CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF- 163
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-ID-----VKFSIFSMVIPSLLRQP 177
+ + I+S +S DG + WD + + LKT ID V F FS P+
Sbjct: 164 --NRDGSLIVS----SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYIL 214
Query: 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
A + + KL+ Y S +T HK E C + GG + E
Sbjct: 215 AATLDNTLKLWDY-SKGKCLKTYTGHKNEKY----------CIFANFSVTGGKWIVSGSE 263
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297
++ IW + E +++K+ HT + A HPT+ I+A
Sbjct: 264 DNLV-----------------YIWNLQTKE----IVQKLQ-GHTDVVISTACHPTENIIA 301
Query: 298 AGDVTGR--ILIWR 309
+ + I +W+
Sbjct: 302 SAALENDKTIKLWK 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 23/126 (18%)
Query: 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATXXXXXXXXXXXXXXXRPGVRD 339
H ++ +AF P R + + I +W G+ F++ P ++
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS 176
Query: 340 -----------------------NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376
N + + T+ H S V+ L S +G Y+ +GGK+
Sbjct: 177 ANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236
Query: 377 LVVWQL 382
L++W +
Sbjct: 237 LLIWDI 242
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIK 436
+ DN + L + +++ +G K
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHK 237
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 51/223 (22%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
+V I+ TG + +L H PV+ V + + I+S +S DG + WD + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS---AVHFNRDGSLIVS----SSYDGLCRIWDTASGQ 185
Query: 155 LLKT-ID-----VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208
LKT ID V F FS P+ A + + KL+ Y S +T HK E
Sbjct: 186 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKY 241
Query: 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA 268
C + GG + E ++ IW + E
Sbjct: 242 ----------CIFANFSVTGGKWIVSGSEDNLV-----------------YIWNLQTKE- 273
Query: 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR--ILIWR 309
+++K+ HT + A HPT+ I+A+ + I +W+
Sbjct: 274 ---IVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 56 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 114 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 148
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIK 436
+ DN + L + +++ +G K
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHK 237
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 56 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 114 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 148
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
+V I+ TG + +L H PV+ V + + I+S +S DG + WD + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS---AVHFNRDGSLIVS----SSYDGLCRIWDTASGQ 185
Query: 155 LLKT-ID-----VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208
LKT ID V F FS P+ A + + KL+ Y S +T HK E
Sbjct: 186 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKY 241
Query: 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA 268
C + GG + E ++ IW + E
Sbjct: 242 ----------CIFANFSVTGGKWIVSGSEDNLV-----------------YIWNLQTKE- 273
Query: 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298
+++K+ HT + A HPT+ I+A+
Sbjct: 274 ---IVQKLQ-GHTDVVISTACHPTENIIAS 299
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391
H EV L ++ DG +L SGG + ++ VW G+ ++P
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 88 LLVCTSNT-VSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIK 146
L C+ ++ S++ + G ++ +L+GH + ++ V YC T S D +IK
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-------DCFTKYCVTGSADYSIK 99
Query: 147 YWDFSVPELLKTID-------VKFS----IFSMVIPSLLRQPA 178
WD S + + T V+FS F ++ ++++ P
Sbjct: 100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405
H S ++ L S DG + S GK+G + +W L K + + SP+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLS 409
H VS + F+ DG+ + S +G+ +W +G+ K + P+ + SP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIK 436
+ DN + L + +++ +G K
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHK 237
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE 154
+V I+ TG + +L H PV+ V + + I+S +S DG + WD + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVS---AVHFNRDGSLIVS----SSYDGLCRIWDTASGQ 185
Query: 155 LLKT-ID-----VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208
LKT ID V F FS P+ A + + KL+ Y S +T HK E
Sbjct: 186 CLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKY 241
Query: 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA 268
C + GG + E ++ IW + E
Sbjct: 242 ----------CIFANFSVTGGKWIVSGSEDNLV-----------------YIWNLQTKE- 273
Query: 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298
+++K+ HT + A HPT+ I+A+
Sbjct: 274 ---IVQKLQ-GHTDVVISTACHPTENIIAS 299
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHKAPV 117
Y K I G + +S A+S+D LLV S+ T+ I+ S+G + +L+GH V
Sbjct: 56 YDGKFEKTISGHKLGISDV-AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
P S + S D +++ WD + LKT+
Sbjct: 114 FCCNFNPQSNLIV-------SGSFDESVRIWDVKTGKCLKTL 148
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 93 SNTVSIFSTSTGLQISSLEG---HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149
+TV I+ TG + +L+G H++ VT + ++ T+S DGT+K WD
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---------NFVITSSDDGTVKLWD 388
Query: 150 FSVPELLKTI 159
E ++ +
Sbjct: 389 LKTGEFIRNL 398
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQS------------------- 180
SLDGT+ +++ E+LKTI S + I +L P S
Sbjct: 316 SLDGTLNFYELGHDEVLKTI----SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDH 371
Query: 181 -------DEKPPKLFAYLSVEDTRETTKSHKKE----PRPNTMNGRICKCNLT------- 222
D + ++ +S +DT + K E P+ + N LT
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431
Query: 223 -ESRLAGGVTLAEMKEP-QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHH 280
+S + + P +++S + G+ + + ++K+ D+E V +
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----VSFDLKTPL 487
Query: 281 TKKLTVLAFHPTQRIVAAGDVTGRILIW 308
K + ++ P++ +AAGDV G+IL++
Sbjct: 488 RAKPSYISISPSETYIAAGDVMGKILLY 515
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQS------------------- 180
SLDGT+ +++ E+LKTI S + I +L P S
Sbjct: 316 SLDGTLNFYELGHDEVLKTI----SGHNKGITALTVNPLISGSYDGRIXEWSSSSXHQDH 371
Query: 181 -------DEKPPKLFAYLSVEDTRETTKSHKKE----PRPNTMNGRICKCNLT------- 222
D + ++ +S +DT + K E P+ + N LT
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431
Query: 223 -ESRLAGGVTLAEMKEP-QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHH 280
+S + + P +++S + G+ + + ++K+ D+E V +
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----VSFDLKTPL 487
Query: 281 TKKLTVLAFHPTQRIVAAGDVTGRILIW 308
K + ++ P++ +AAGDV G+IL++
Sbjct: 488 RAKPSYISISPSETYIAAGDVXGKILLY 515
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL 390
H V + F++DG L S ++ V+ VW TG FL
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1047
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL 390
H V + F++DG L S ++ V+ VW TG FL
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNV 640
V + + L+Q D Q +GW + Y + A A L + +T I L PD +
Sbjct: 70 VNMVKERLRQPDAQENGW---LLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELL 122
Query: 641 LVAVIGETLTPI 652
+ V+G L P+
Sbjct: 123 VERVVGRRLDPV 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,777,646
Number of Sequences: 62578
Number of extensions: 881588
Number of successful extensions: 2326
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1867
Number of HSP's gapped (non-prelim): 410
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)